Citrus Sinensis ID: 018205
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.991 | 0.997 | 0.494 | 1e-106 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.969 | 0.988 | 0.477 | 6e-98 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.969 | 0.988 | 0.474 | 3e-97 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.969 | 0.988 | 0.471 | 1e-96 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.983 | 0.988 | 0.457 | 3e-96 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.969 | 0.966 | 0.488 | 8e-96 | |
| P0DH60 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.969 | 0.966 | 0.497 | 2e-92 | |
| Q6VMW0 | 366 | 8-hydroxyquercetin 8-O-me | N/A | no | 0.972 | 0.953 | 0.484 | 1e-91 | |
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 0.997 | 0.980 | 0.489 | 1e-90 | |
| C6TAY1 | 358 | Flavonoid 4'-O-methyltran | no | no | 0.980 | 0.983 | 0.455 | 9e-90 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/360 (49%), Positives = 256/360 (71%), Gaps = 4/360 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD + E+ AQAH++ I+N++ S SLKCA++L IP++IH HG+P+TLP+LV+ L
Sbjct: 1 MDLANGVISAELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120
++P ++ +++LMR+LVH+GF + VQ Q +EEE Y LT S+L L D + P+V
Sbjct: 61 PVHPKRSQCVYRLMRILVHSGFLAAQRVQ--QGKEEEGYVLTDASRLLLMDDSLSIRPLV 118
Query: 121 LTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL 180
L + D + P H+LS WF++++ + + TA + + FWDY P N+ +N+AMASD++L
Sbjct: 119 LAMLDPILTKPWHYLSAWFQNDDPTPFHTAYERS-FWDYAGHEPQLNNSFNEAMASDARL 177
Query: 181 -ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNL 239
++++K+ Q +F GL SLVDVGGGTG A+ I+ AFP + CTVLDL HVV + + NL
Sbjct: 178 LTSVLLKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNL 237
Query: 240 KFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299
+ AGDMF++IPPADA K I H + +E+C+KILKRCREAI S+ + GKVIIID+++ +
Sbjct: 238 NYFAGDMFEAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMK 297
Query: 300 KKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+ D + TE +L +DM MM+ G ER E EWEKLFLDAGFSH+KITP+ G++SLIEVYP
Sbjct: 298 NQGDYKSTETQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/356 (47%), Positives = 241/356 (67%), Gaps = 8/356 (2%)
Query: 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEIN 63
I E+F+AQA L+K IY ++ S SLK AV ++IP +IH HG+PI+L LVS L++
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVP 64
Query: 64 PTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTL 123
+K + +LMR L H GFF +EEE+YALT+ S+L ++ CL+P+V +
Sbjct: 65 SSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVECV 118
Query: 124 TDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANL 183
D H L +W + +L+ + G+ FWD++ KNP++N+ +N AMASDS+L NL
Sbjct: 119 LDPTLSGSYHELKKWIYEEDLTLF-GVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
++DC +F GL S+VDVGGGTG+ A+II E FP +KC V D P VV + ++NL ++
Sbjct: 178 ALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
GDMF SIP ADA K I H + D+DCL+ILK+C+EA+ + G RGKV IID+VINEKK++
Sbjct: 238 GDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDE 297
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
Q+T+ KLL D + M + G ER E+EW+KLF++AGF H+KI+P+ G SLIE+YP
Sbjct: 298 NQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/356 (47%), Positives = 241/356 (67%), Gaps = 8/356 (2%)
Query: 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEIN 63
I E+F+AQA L+K IY ++ S SLK AVE++IP +I HG+PI+L LVS L++
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 64 PTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTL 123
+K + +LMR L H GFF +EEE+YALT+ S+L ++ CL+P+V +
Sbjct: 65 SSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVECV 118
Query: 124 TDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANL 183
D H L +W + +L+ + G+ FWD++ KNP++N+ +N AMASDS+L NL
Sbjct: 119 LDPTLSGSYHELKKWIYEEDLTLF-GVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
++DC +F GL S+VDVGGGTG+ A+II E FP +KC V D P VV + ++NL ++
Sbjct: 178 ALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
GDMF SIP ADA K I H + D+DCL+ILK+C+EA+ + G RGKV IID+VI+EKK++
Sbjct: 238 GDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDE 297
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
Q+T+ KLL D + M + G ER E+EW+KLF++AGF H+KI+P+ G SLIE+YP
Sbjct: 298 NQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (906), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/356 (47%), Positives = 241/356 (67%), Gaps = 8/356 (2%)
Query: 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEIN 63
I E+F+AQA L+K IY ++ S SLK AVE++IP +I HG+PI+L LVS L++
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 64 PTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTL 123
+K + +LMR L H GFF +EEE+YALT+ S+L ++ CL+P+V +
Sbjct: 65 SSKIGNVRRLMRYLAHNGFFEIIT------KEEESYALTVASELLVRGSDLCLAPMVECV 118
Query: 124 TDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANL 183
D H L +W + +L+ + G+ FWD++ KNP++N+ +N AMASDS+L NL
Sbjct: 119 LDPTLSGSYHELKKWIYEEDLTLF-GVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
++DC +F GL S+VDVGGGTG+ A+II E FP +KC V D P VV + ++NL ++
Sbjct: 178 ALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
GDMF SIP ADA K I H + D+DCL+ILK+C+EA+ + G RGKV IID+VI++KK++
Sbjct: 238 GDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDE 297
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
Q+T+ KLL D + M + G ER E+EW+KLF++AGF H+KI+P+ G SLIE+YP
Sbjct: 298 NQVTQIKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 163/356 (45%), Positives = 242/356 (67%), Gaps = 3/356 (0%)
Query: 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEIN 63
I E+F+ QA L++ IY ++ S LK VELDIP +IH HG+PIT+ +LVS L++
Sbjct: 5 INGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVP 64
Query: 64 PTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTL 123
TKA + ++MR + H GFF +Q +Q+E EAYALT S+L +K CL+P+V +
Sbjct: 65 QTKAGNVQRIMRYMAHNGFFERVRIQE-EQEENEAYALTAASELLVKGSELCLAPMVECV 123
Query: 124 TDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANL 183
D H L +W + +L+ + + G+ FW+++ +NP++N +N AMASDSQ+ NL
Sbjct: 124 LDPTLSGSYHQLKKWIYEEDLTLFGVS-LGSHFWEFLNENPEYNKSFNDAMASDSQMINL 182
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
++DC F+G+ S+VDVGGG G+ A+II + FP +KC V D P VV + T+NL ++
Sbjct: 183 ALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVG 242
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
GDMFQS+P ADA K I H + D DC +IL++C+EA++S G++GKVIII++VINE +++
Sbjct: 243 GDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDE 302
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
++T KLL D + M + G ER+E+EW+KLF++AGF +KI+P+ G SLIEVYP
Sbjct: 303 HEITGTKLLMD-VNMACLNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 171/350 (48%), Positives = 238/350 (68%), Gaps = 2/350 (0%)
Query: 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGL 70
E++ AQ HL+K +YN+VSS +LK A+EL I + IH HG+P+TLP+L S+L+++P+K + L
Sbjct: 12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHPSKVNIL 71
Query: 71 FKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVN 130
++ +RLL H GFF+ V+S + +EE AY LT +SKL + K CLS +V ++
Sbjct: 72 YRFLRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALHPSSLD 131
Query: 131 PCHFLSRWFR-DNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQ 189
+WF D E + +E A G +WD++ K+ D S++ AMA+DS+L L +++ +
Sbjct: 132 MWGVSKKWFHEDKEQTLFECAT-GENYWDFLNKDSDSLSMFQDAMAADSRLFKLAIQENK 190
Query: 190 PIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS 249
+F+GL SLVDV GGTG A++I EAFP IKCTV D P VV + +NL F+ GDMF+S
Sbjct: 191 HVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVGGDMFKS 250
Query: 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA 309
+P ADA K + H + DE LKILK +EAI+ +G GKVIIIDI I+E +D LTE
Sbjct: 251 VPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTEL 310
Query: 310 KLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+L YD++M+ G ERT+KEWEKL DAGFS +KITP+ G KSLIEVYP
Sbjct: 311 QLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|P0DH60|M3OM2_PEA 6a-hydroxymaackiain methyltransferase 2 OS=Pisum sativum GN=HMM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 174/350 (49%), Positives = 242/350 (69%), Gaps = 2/350 (0%)
Query: 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGL 70
E++ AQ HL+K IYN+VSS +LK AVEL I + IH HG+P+TLP+L S+L+++P+K + L
Sbjct: 12 ELYHAQIHLYKHIYNFVSSMALKSAVELGIADAIHNHGKPMTLPELASSLKLHPSKVNIL 71
Query: 71 FKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVN 130
++ +RLL H GFF+ V+S ++EE AY LT +SKL + K CLS VV + ++
Sbjct: 72 YRFLRLLTHNGFFAKTTVKSNGEEEETAYVLTPSSKLLVSGKSTCLSSVVKGALHPISLD 131
Query: 131 PCHFLSRWFR-DNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQ 189
+WF D E + +E A G +WD++ K+ D+ SI+ AMA+DS+L L +++ +
Sbjct: 132 LWGVSKKWFHEDKEQTLFECAT-GENYWDFLNKDSDYLSIFQDAMAADSRLFKLAIQENK 190
Query: 190 PIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS 249
+F+GL SLVDV GGTG A++I EAFP IKCTV D P VV + +NL F++GDMF+S
Sbjct: 191 HVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVSGDMFKS 250
Query: 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA 309
+P ADA K + H + DE LKILK+ +EAI+ +G GKVIIIDI I++ +D LTE
Sbjct: 251 VPSADAVLLKWVLHDWNDELSLKILKKSKEAISHKGKDGKVIIIDISIDDNSDDHGLTEL 310
Query: 310 KLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+L YD++M+ G ERT+KEWEKL DAGFS +KITP+ G KSLIEVYP
Sbjct: 311 QLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
|
3-O-methyltransferase involved in the phytoalexin pisatin biosynthesis. Can use (+)-6a-hydroxymaackiain, (+)-maackiain and with a lower activity (+)-medicarpin and 2,7,4'-trihydroxyisoflavanone as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 252/357 (70%), Gaps = 8/357 (2%)
Query: 10 KEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADG 69
+E+ EAQAH++ IY+Y++S SLKCA++L IP+ IHKHG PITL QL AL IN K+ G
Sbjct: 11 QELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHG 70
Query: 70 LFKLMRLLVHTGFFSTANVQSAQQQEEE-----AYALTLTSKLFLKDKPYCLSPVVLTLT 124
LF+LMR+LVH+GFF V+ + E+E AY+LT S+L L+ +P ++P L ++
Sbjct: 71 LFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMS 130
Query: 125 DQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLAN-L 183
D V+ H LS WFR++ ++A++T G F +Y + N ++N+AMA D+ N +
Sbjct: 131 DPVYTETWHHLSEWFRNDAVAAFDTKY-GMTFPEYAVADDRLNVLFNEAMACDAGFVNSI 189
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
+ +C+ IF GL S+VDVGGGTG+ A+ I+ AFPG++CTVLDLP+VV + ++NL F++
Sbjct: 190 LTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSFVS 249
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIA-SRGDRGKVIIIDIVINEKKE 302
GDMF IP ADA F K I H + DE+C+KILK+C+EAI+ S K+I+++IV+ ++KE
Sbjct: 250 GDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKE 309
Query: 303 DAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+ TE KL +DM M+ + G ER+EKEW KLF DAGF+++KIT V G++S+IEV+P
Sbjct: 310 THEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether. Mentha piperita (taxid: 34256) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 243/366 (66%), Gaps = 8/366 (2%)
Query: 1 MDPIQNEGAK--EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVS 58
MD + G++ E+ +AQ HL+K +YN+VSS +LK A+EL I +VIH HG+PITLP+L +
Sbjct: 1 MDFSSSNGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELAT 60
Query: 59 ALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE-AYALTLTSKLFLKDKPYCLS 117
AL + P+K L + +RLL H GFF+ V + EEE AY LT SKL +K CL+
Sbjct: 61 ALNLRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLA 120
Query: 118 PVVLTLTDQVFVNPCHFLSRWF-RDNE-LSAYETANDGTVFWDYMAKN--PDFNSIYNQA 173
P+V ++ +WF DNE L+ +E+A G FW+++ K D S++ +A
Sbjct: 121 PIVKGALHPSSLDMWRSSKKWFLEDNEELTLFESAT-GESFWEFLNKETESDTLSMFQEA 179
Query: 174 MASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKV 233
MA+DS + L +K+C+ +F+GLGSLVDV GG G ++I EAFP +KCTV D P VV +
Sbjct: 180 MAADSHMFKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANL 239
Query: 234 PDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293
+NL F+ GDMF+S+PPADA K + H + DE LKILK C+EAI+ RG GKVIII
Sbjct: 240 TGDENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIII 299
Query: 294 DIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKS 353
DI I+E +D +LTE KL YD++M+ G ER +KEWEKL DAGFS +KITP+ G KS
Sbjct: 300 DISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKS 359
Query: 354 LIEVYP 359
LIEV+P
Sbjct: 360 LIEVFP 365
|
2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1 | Back alignment and function description |
|---|
Score = 330 bits (846), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 164/360 (45%), Positives = 231/360 (64%), Gaps = 8/360 (2%)
Query: 3 PIQN-EGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKH--GRPITLPQLVSA 59
P+ N A E+F+ QA L+K + ++ S LK VELDIP++IH H G+PIT +LVS
Sbjct: 4 PLNNGRKASEIFQGQALLYKHLLGFIDSKCLKWMVELDIPDIIHSHSHGQPITFSELVSI 63
Query: 60 LEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPV 119
L++ PTK + LMR L H GFF + EAYALT S+L +K L+P+
Sbjct: 64 LQVPPTKTRQVQSLMRYLAHNGFFEIVRIHD----NIEAYALTAASELLVKSSELSLAPM 119
Query: 120 VLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQ 179
V + + L RW + +L+ + + GT FWD++ K+P +N +N+AMA DSQ
Sbjct: 120 VEYFLEPNCQGAWNQLKRWVHEEDLTVFGVS-LGTPFWDFINKDPAYNKSFNEAMACDSQ 178
Query: 180 LANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNL 239
+ NL +DC +F+GL S+VDVGGGTG A+II EAFP +KC VL+ P+VV + ++NL
Sbjct: 179 MLNLAFRDCNWVFEGLESIVDVGGGTGITAKIICEAFPKLKCMVLERPNVVENLSGSNNL 238
Query: 240 KFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299
F+ GDMF+ IP ADA K + H + D DC+KIL+ C+EAI+ GKV++ID VINE
Sbjct: 239 TFVGGDMFKCIPKADAVLLKLVLHNWNDNDCMKILENCKEAISGESKTGKVVVIDTVINE 298
Query: 300 KKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
K++ Q+TE KLL D+ M + G ER E++W+KLF++AGF +KI+P G SLIE+YP
Sbjct: 299 NKDERQVTELKLLMDVHMACIINGKERKEEDWKKLFMEAGFQSYKISPFTGYLSLIEIYP 358
|
S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively. Glycine max (taxid: 3847) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 225443568 | 361 | PREDICTED: isoflavone-7-O-methyltransfer | 0.997 | 0.991 | 0.585 | 1e-126 | |
| 255562994 | 359 | o-methyltransferase, putative [Ricinus c | 0.997 | 0.997 | 0.566 | 1e-123 | |
| 224077038 | 359 | flavonoid o-methyltransferase related [P | 0.994 | 0.994 | 0.576 | 1e-123 | |
| 359483947 | 355 | PREDICTED: isoflavone-7-O-methyltransfer | 0.980 | 0.991 | 0.582 | 1e-123 | |
| 224116348 | 372 | flavonoid o-methyltransferase related [P | 0.994 | 0.959 | 0.562 | 1e-122 | |
| 225443574 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.991 | 0.994 | 0.567 | 1e-116 | |
| 359483934 | 358 | PREDICTED: isoflavone-7-O-methyltransfer | 0.991 | 0.994 | 0.565 | 1e-115 | |
| 255563164 | 355 | o-methyltransferase, putative [Ricinus c | 0.988 | 1.0 | 0.523 | 1e-113 | |
| 225443570 | 354 | PREDICTED: isoflavone-7-O-methyltransfer | 0.986 | 1.0 | 0.534 | 1e-112 | |
| 147788173 | 354 | hypothetical protein VITISV_009881 [Viti | 0.986 | 1.0 | 0.529 | 1e-110 |
| >gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/362 (58%), Positives = 279/362 (77%), Gaps = 4/362 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD I EG E+F+AQ+H++K I+N+++S +LKCAVEL IP++IH H PI+LPQLVSAL
Sbjct: 1 MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSAL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL-KDKPYC--LS 117
+ PTK + +LMR+LVH+GFF+TA V Q++E+E Y LT +S+L L KD LS
Sbjct: 61 HLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVPNLS 120
Query: 118 PVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASD 177
VL + D V V P HFL WFR N+L+A++TA+ G FWDY + + F +++N+AMASD
Sbjct: 121 AFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAH-GKSFWDYGSHDHKFFNLFNEAMASD 179
Query: 178 SQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTD 237
S++ +L++KDC+P+F+GLGSLVDVGGG G ARIISEAFP +KCTV DLPHVV P+
Sbjct: 180 SRMMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECG 239
Query: 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297
NLK++ GDMFQS+P ADA K + H+ DE+C+KILK+CREAI S+ GKVI+IDIVI
Sbjct: 240 NLKYVGGDMFQSVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVIDIVI 299
Query: 298 NEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357
NEKKE+ +TEAKLL+D+LMM V G ER EKEWEKLFL+AGFSH+KI P++G++SLIEV
Sbjct: 300 NEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEV 359
Query: 358 YP 359
+P
Sbjct: 360 FP 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/360 (56%), Positives = 273/360 (75%), Gaps = 2/360 (0%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD ++ A E+ +AQ H++ I+NY++S LKCAV+L IP++IHKHG+PITLP+LVSAL
Sbjct: 1 MDSTDSQKATELLQAQLHVYNHIFNYINSMCLKCAVQLGIPDIIHKHGKPITLPELVSAL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120
I+PTK + +++LMR+LVH+GFFS + Q++ +E Y LT +SKL +KD P CL P V
Sbjct: 61 HIHPTKINFMYRLMRMLVHSGFFSITKAANGQEEGQEVYVLTPSSKLLVKDNPNCLKPFV 120
Query: 121 LTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL 180
+L FV P H L WFR NEL+ ++ A+ G FW+Y +NP+FN ++N+AMASDS++
Sbjct: 121 DSLLKPDFVTPGHVLGDWFRGNELTVFQRAH-GMAFWEYNERNPEFNQLFNEAMASDSRM 179
Query: 181 ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLK 240
NL+++DC+PIF+G+ SLVDVGGG GS ARIISEAFP +KCTVL+LP V+ + T NL
Sbjct: 180 MNLVIRDCKPIFEGVNSLVDVGGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTKNLN 239
Query: 241 FIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRG-KVIIIDIVINE 299
++ GDMFQ IP ADA K I H + DE+C+KILK+C+EAI+S G KVI+ID+VIN+
Sbjct: 240 YVGGDMFQHIPSADAIILKLILHGWNDEECVKILKKCKEAISSTGKGSEKVIVIDLVIND 299
Query: 300 KKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
KK++ + TE KLL+DMLMM G ERTEKEW +LFL AGFSHFKITP+ G++SLIEVYP
Sbjct: 300 KKDEYEFTETKLLFDMLMMFVATGKERTEKEWGELFLKAGFSHFKITPILGLRSLIEVYP 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 208/361 (57%), Positives = 273/361 (75%), Gaps = 4/361 (1%)
Query: 1 MDPI-QNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSA 59
MDPI Q++ A E+F+A HL ++NY++S SL CA +L IP++IH HGRPITLP LVSA
Sbjct: 1 MDPIIQDQKATELFQAHTHLHSQMFNYINSMSLMCAAQLGIPDIIHNHGRPITLPHLVSA 60
Query: 60 LEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFLKDKPYCLSP 118
L I P K +++LMR+LVH+GFF+T + Q + EEEAY LT S+L +KD CLSP
Sbjct: 61 LHIAPNKTSIIYRLMRMLVHSGFFATTKAANGQGEGEEEAYVLTPPSQLLVKDNTNCLSP 120
Query: 119 VVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDS 178
++L + FV P L WFR NE +A+E A G FW+Y +NP+ N ++N+AMA DS
Sbjct: 121 F-MSLINPAFVTPWLSLGDWFRGNEPTAFEHAY-GMAFWEYHNQNPELNRLFNEAMACDS 178
Query: 179 QLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDN 238
Q+ NL+++DC+PIF+GL S+VDVGGGTGS +RIISEAFP + CTVL+LP V+ + T N
Sbjct: 179 QMMNLVIRDCKPIFEGLNSMVDVGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKN 238
Query: 239 LKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298
L ++ GDMFQ IP ADA K IFH + DEDCLKILK+C+EAI+S+ GKVII+D+VI+
Sbjct: 239 LNYVGGDMFQHIPSADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVID 298
Query: 299 EKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358
EKK++ +LTE KLL+DMLMMV G ER+ KEWEKLFL+AGFSH+KITP++G++SLIEVY
Sbjct: 299 EKKDEKELTETKLLFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVY 358
Query: 359 P 359
P
Sbjct: 359 P 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483947|ref|XP_003633042.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 211/362 (58%), Positives = 276/362 (76%), Gaps = 10/362 (2%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD I EG E+F+AQ+H++K I+N+++S +LKCAVEL IP++IH H PI+LPQLVSAL
Sbjct: 1 MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSAL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL-KDKPYC--LS 117
+ PTK + +LMR+LVH+GFF+TA V Q++E+E Y LT +S+L L KD LS
Sbjct: 61 HLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVPNLS 120
Query: 118 PVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASD 177
VL + D V V P HFL WFR N+L+A++TA+ G FWDY + + F +++N+AMASD
Sbjct: 121 AFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAH-GKSFWDYGSHDHKFFNLFNEAMASD 179
Query: 178 SQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTD 237
S++ +L++KDC+P+F+GLGSLVDVGGG G ARIISEAFP +KCTV DLPHVV P+
Sbjct: 180 SRMMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECG 239
Query: 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297
NLK++ GDMFQS+P ADA K DE+C+KILK+CREAI S+ GKVI+IDIVI
Sbjct: 240 NLKYVGGDMFQSVPTADAILLKG------DEECVKILKKCREAIPSKEKGGKVIVIDIVI 293
Query: 298 NEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357
NEKKE+ +TEAKLL+D+LMM V G ER EKEWEKLFL+AGFSH+KI P++G++SLIEV
Sbjct: 294 NEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEV 353
Query: 358 YP 359
+P
Sbjct: 354 FP 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/359 (56%), Positives = 272/359 (75%), Gaps = 2/359 (0%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
+DPIQ + A E+F+AQ HL+ ++NY++S SL CA +L IP++IH HGRPITLP+LVSAL
Sbjct: 16 IDPIQEQKATELFQAQTHLYGQMFNYLNSMSLVCAAQLGIPDIIHNHGRPITLPELVSAL 75
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120
I P K+ +++LMR+LVH+GFF+T Q EAY LT S+L +KD CLSP
Sbjct: 76 HIPPNKSSCIYRLMRMLVHSGFFATTKAVIGQGGGGEAYVLTPPSQLLVKDNTNCLSPF- 134
Query: 121 LTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL 180
++L + FV P H L WFR +E +A++ A G FW+Y +NP+ N ++N AMA DSQ+
Sbjct: 135 MSLINPAFVTPWHSLGDWFRGSEPTAFQQAY-GMAFWEYNNQNPELNGLFNAAMACDSQM 193
Query: 181 ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLK 240
NL+++DC+PIF+GL S+VDVGGGTGS ARIISE FP + CTVL++P V+ + T+NLK
Sbjct: 194 MNLVIRDCKPIFEGLDSMVDVGGGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENLK 253
Query: 241 FIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300
++ GDMFQ IP ADA K IFH + DEDC+KILK+C+EAI+S+ GKVII+D+VINEK
Sbjct: 254 YVGGDMFQHIPSADAVLLKLIFHGWSDEDCVKILKKCKEAISSKEKGGKVIIVDVVINEK 313
Query: 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
K++ +LTE KLL+DMLMMV G ER+ +EWE+LFL+AGFSH+KIT ++G++SLIEVYP
Sbjct: 314 KDEHELTETKLLFDMLMMVVAAGKERSVEEWERLFLEAGFSHYKITSLFGLRSLIEVYP 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443574|ref|XP_002278208.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/361 (56%), Positives = 275/361 (76%), Gaps = 5/361 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD I EGA E+F+AQ+H++K I ++++S +L+CAV+L IP++IH H P TLPQLVSAL
Sbjct: 1 MDLIHGEGAGELFQAQSHMYKHICSFMNSMALRCAVQLGIPDIIHNHAHPTTLPQLVSAL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYC-LSPV 119
I PTKA + +LMRLLVH+GFF+ A V + +EEE Y LT +S+L LKD P LSP+
Sbjct: 61 HIPPTKASCVHRLMRLLVHSGFFAMAKVH--EHEEEEGYILTPSSRLLLKDNPTSNLSPL 118
Query: 120 VLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQ 179
VLT+ V V P HF W R ++L+A+ETA+ G FWD+ + NP+ +++N+ MASDSQ
Sbjct: 119 VLTMLHPVLVTPWHFFGDWLRGDDLTAFETAH-GVSFWDHGSHNPEIFNLFNEGMASDSQ 177
Query: 180 LANLI-VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDN 238
+ +++ ++ +P+F+GL SLVD+GGGTG ARIISEAFP +KCTV DLPHVV +P++ N
Sbjct: 178 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRN 237
Query: 239 LKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298
L+++ GDMFQS+P ADA K + H + DEDCLKILK+CREAI S + GKVIIID+VIN
Sbjct: 238 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVIN 297
Query: 299 EKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358
EKK++ +TE KLL DM+MM V G ER EKEWEKLFL+AGF H KI+P++G++SLIEV+
Sbjct: 298 EKKDEDDITETKLLMDMMMMTLVNGRERNEKEWEKLFLEAGFRHHKISPIFGLRSLIEVF 357
Query: 359 P 359
P
Sbjct: 358 P 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483934|ref|XP_003633039.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/361 (56%), Positives = 273/361 (75%), Gaps = 5/361 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD I EGA E+F+AQ+H++K I ++++S +LKCAV+L IP++IH H P TLPQLVSAL
Sbjct: 1 MDLIHGEGAGELFQAQSHMYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTTLPQLVSAL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYC-LSPV 119
I PTKA + +LMRLLVH+GFF+ A V + +EEE Y LT +S+L KD P LSP
Sbjct: 61 HIPPTKASCVHRLMRLLVHSGFFAIAKVH--EHEEEEGYILTPSSRLLFKDNPTSNLSPF 118
Query: 120 VLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQ 179
VLT+ V P HF W R ++L+A+ETA+ G FWD+ + NP+ +++N+ MASDSQ
Sbjct: 119 VLTVLHPALVTPWHFFGDWLRGDDLTAFETAH-GVSFWDHGSHNPEIFNLFNEGMASDSQ 177
Query: 180 LANLI-VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDN 238
+ +++ ++ +P+F+GL SLVD+GGGTG ARIISEAFP +KCTV DLPHVV +P++ N
Sbjct: 178 MMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRN 237
Query: 239 LKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298
L+++ GDMFQS+P ADA K + H + DEDCLKILK+CREAI S + GKVIIID+VIN
Sbjct: 238 LEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVIN 297
Query: 299 EKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358
EKK++ +TE KLL DM+MM V G ER EKEWE+LFL+AGF H+KITP++G++SLIEV+
Sbjct: 298 EKKDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVF 357
Query: 359 P 359
P
Sbjct: 358 P 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563164|ref|XP_002522586.1| o-methyltransferase, putative [Ricinus communis] gi|223538277|gb|EEF39886.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 188/359 (52%), Positives = 264/359 (73%), Gaps = 4/359 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD +Q+ A ++ +AQ H++ I+N ++S LKC+V+L IP++I HG+PITLP+LVSAL
Sbjct: 1 MDSVQSPKATDLLQAQTHIYNHIFNNLNSMCLKCSVQLGIPDIIQNHGKPITLPELVSAL 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120
I+P K L++LMR+LV++GFF T Q EAY LT +++L +KD P CLS V
Sbjct: 61 NIHPGKTTCLYRLMRMLVYSGFFVTTETPDGQ----EAYDLTPSTRLLVKDNPNCLSSFV 116
Query: 121 LTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL 180
+ L +V H+L WF++N+L G FW+Y ++P++N I+N++MASDS++
Sbjct: 117 IALLWPDYVAAGHYLGDWFKNNKLDTVYDQAHGMEFWEYNERHPEYNQIFNESMASDSRM 176
Query: 181 ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLK 240
NL++ DC+PIF+GL S+VDVGGG GS ARIIS+ FP ++CTVLD VV + + NL
Sbjct: 177 MNLVIGDCKPIFEGLNSVVDVGGGNGSLARIISQNFPHMQCTVLDRAQVVGSLEGSKNLN 236
Query: 241 FIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300
++ GDMF+ +P ADA K + H + DE+C++ILK CREAIAS+G GKVI+IDIV++EK
Sbjct: 237 YVPGDMFKHVPSADAAILKLVLHCWNDEECIRILKNCREAIASKGKGGKVIVIDIVVDEK 296
Query: 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
KE +LTE KLL+D+LMMV V G+ERTEKEW++LFL+AGFSH+KITP+ G++SLIEVYP
Sbjct: 297 KEQDELTETKLLFDILMMVVVNGTERTEKEWKRLFLEAGFSHYKITPLLGVRSLIEVYP 355
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443570|ref|XP_002278127.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/359 (53%), Positives = 261/359 (72%), Gaps = 5/359 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD I +G E+FEAQ+ ++K +++++ S SLKCAV+L IP+ IH H +PITLP+L SA+
Sbjct: 1 MDHINGQGRSELFEAQSFIYKHVFSFMDSMSLKCAVQLGIPDAIHNHNQPITLPELASAI 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120
++ P K L +LMRLLVH+GFF+ V Q E Y LT S+L +K L+P+V
Sbjct: 61 QVPPEKTSRLHQLMRLLVHSGFFAMQKVDENQ----EGYVLTPPSRLLVKGNATSLAPIV 116
Query: 121 LTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL 180
L + D V V P HFL W + + L+A+E A+ G W+Y +NP+F S+ + MA+DS++
Sbjct: 117 LGMLDPVLVTPWHFLGSWLQGSSLTAFEAAH-GMDLWNYGNQNPEFFSLIGEIMATDSRM 175
Query: 181 ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLK 240
+L +++C+ IF+GL SLVDVGGGTG+ AR I EAFP +KCTVLDLP VV +P ++NL
Sbjct: 176 MSLAIRECKEIFEGLSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENLD 235
Query: 241 FIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300
++ GDMFQSIP ADA F K++ H + DEDC+KILKRCREAI S + GKVIIID+V++ K
Sbjct: 236 YVGGDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSNK 295
Query: 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
K++ +L + KL DM+MMV V G ER E+EWEKLFL+AGFSH+KITP +G+ SLIEVYP
Sbjct: 296 KDEHELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788173|emb|CAN75970.1| hypothetical protein VITISV_009881 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/359 (52%), Positives = 258/359 (71%), Gaps = 5/359 (1%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD I +G E+FEAQ+ ++K +++++ S SLKCAV+L IP+ IH H +PITLP+L SA+
Sbjct: 1 MDRIHGQGRSELFEAQSFIYKHVFSFMDSMSLKCAVQLGIPDAIHNHNQPITLPELASAI 60
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120
++ P K L +LMRLLVH+GFF+ V Q E Y LT S+L +K L+P+V
Sbjct: 61 QVPPEKTSRLHQLMRLLVHSGFFAMQKVDENQ----EGYVLTPPSRLLVKGNATSLAPIV 116
Query: 121 LTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL 180
L + D V V P HFL W + + L+A+E A+ G W+Y +NP+ S + MA+DS++
Sbjct: 117 LGMLDPVLVTPWHFLGSWLQGSSLTAFEAAH-GMDLWNYGNQNPEXFSXIGEIMATDSRM 175
Query: 181 ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLK 240
+L +++C+ IF+G SLVDVGGGTG+ AR I EAFP +KCTVLDLP VV +P ++NL
Sbjct: 176 MSLAIRECKEIFEGXSSLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENLD 235
Query: 241 FIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300
++ GDMFQSIP ADA F K++ H + DEDC+KILKRCREAI S + GKVIIID+V++ K
Sbjct: 236 YVGGDMFQSIPSADAIFIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSNK 295
Query: 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
K++ +L + KL DM+MMV V G ER E+EWEKLFL+AGFSH+KITP +G+ SLIEVYP
Sbjct: 296 KDEHELAKTKLFNDMMMMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.972 | 0.953 | 0.473 | 2.5e-88 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.969 | 0.948 | 0.484 | 3.3e-86 | |
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.997 | 0.980 | 0.472 | 6.9e-86 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.983 | 0.988 | 0.441 | 7.2e-84 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.972 | 0.983 | 0.443 | 3.1e-74 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.944 | 0.974 | 0.426 | 1.6e-72 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.871 | 0.836 | 0.360 | 2.1e-52 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.944 | 0.887 | 0.335 | 1.8e-46 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.568 | 0.627 | 0.386 | 2.9e-46 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.941 | 0.931 | 0.298 | 6.3e-37 |
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 169/357 (47%), Positives = 245/357 (68%)
Query: 10 KEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADG 69
+E+ EAQAH++ IY+Y++S SLKCA++L IP+ IHKHG PITL QL AL IN K+ G
Sbjct: 11 QELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHG 70
Query: 70 LFKLMRLLVHTGFFSTANVQ-----SXXXXXXXXXXLTLTSKLFLKDKPYCLSPVVLTLT 124
LF+LMR+LVH+GFF V+ LT S+L L+ +P ++P L ++
Sbjct: 71 LFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMS 130
Query: 125 DQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLAN-L 183
D V+ H LS WFR++ ++A++T G F +Y + N ++N+AMA D+ N +
Sbjct: 131 DPVYTETWHHLSEWFRNDAVAAFDTKY-GMTFPEYAVADDRLNVLFNEAMACDAGFVNSI 189
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
+ +C+ IF GL S+VDVGGGTG+ A+ I+ AFPG++CTVLDLP+VV + ++NL F++
Sbjct: 190 LTTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSFVS 249
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIA-SRGDRGKVIIIDIVINEKKE 302
GDMF IP ADA F K I H + DE+C+KILK+C+EAI+ S K+I+++IV+ ++KE
Sbjct: 250 GDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKE 309
Query: 303 DAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+ TE KL +DM M+ + G ER+EKEW KLF DAGF+++KIT V G++S+IEV+P
Sbjct: 310 THEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 173/357 (48%), Positives = 237/357 (66%)
Query: 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGL 70
E++ AQ HL+K +YN+VSS +LK A+EL I +VIH HG+PITLP+L SAL+++P+K L
Sbjct: 12 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADVIHNHGKPITLPELASALKLHPSKVGIL 71
Query: 71 FKLMRLLVHTGFFSTANVQSXXXXXX-----XXXXLTLTSKLFLKDKPYCLSPVVLTLTD 125
++ +RLL H GFF+ V S LT SKL +K KP CL+ +V
Sbjct: 72 YRFLRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALH 131
Query: 126 QVFVNPCHFLSRWFR-DNELSAYETANDGTVFWDYMAKNPDFN--SIYNQAMASDSQLAN 182
++ +WF+ D EL+ +E+A G FWD++ K+ + S++ +AMA+DSQ+
Sbjct: 132 PSSLDMWRSSEKWFKEDKELTLFESAT-GESFWDFLNKDSESGTLSMFQEAMAADSQMFK 190
Query: 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFI 242
L +K+C+ +F+GL SLVDVGGGTG ++I E FP +KCTV D P VV + +NLKF+
Sbjct: 191 LALKECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFV 250
Query: 243 AGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE 302
GDMF+SIPPADA K + H + DE LKILK +EAI+ +G GKVIIIDI I+E
Sbjct: 251 GGDMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDEASG 310
Query: 303 DAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
D +LTE +L YD++M+ G ER +KEWEKL DAGFS +KITP+ G KSLIEV+P
Sbjct: 311 DRELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 173/366 (47%), Positives = 239/366 (65%)
Query: 1 MDPIQNEGAK--EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVS 58
MD + G++ E+ +AQ HL+K +YN+VSS +LK A+EL I +VIH HG+PITLP+L +
Sbjct: 1 MDFSSSNGSEDTELSQAQIHLYKHVYNFVSSMALKSAMELGIADVIHSHGKPITLPELAT 60
Query: 59 ALEINPTKADGLFKLMRLLVHTGFFSTANV-QSXXXXXXXXXXLTLTSKLFLKDKPYCLS 117
AL + P+K L + +RLL H GFF+ V + LT SKL +K CL+
Sbjct: 61 ALNLRPSKIGVLHRFLRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLA 120
Query: 118 PVVLTLTDQVFVNPCHFLSRWF-RDNE-LSAYETANDGTVFWDYMAKNPDFN--SIYNQA 173
P+V ++ +WF DNE L+ +E+A G FW+++ K + + S++ +A
Sbjct: 121 PIVKGALHPSSLDMWRSSKKWFLEDNEELTLFESAT-GESFWEFLNKETESDTLSMFQEA 179
Query: 174 MASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKV 233
MA+DS + L +K+C+ +F+GLGSLVDV GG G ++I EAFP +KCTV D P VV +
Sbjct: 180 MAADSHMFKLALKECKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANL 239
Query: 234 PDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293
+NL F+ GDMF+S+PPADA K + H + DE LKILK C+EAI+ RG GKVIII
Sbjct: 240 TGDENLNFVGGDMFKSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIII 299
Query: 294 DIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKS 353
DI I+E +D +LTE KL YD++M+ G ER +KEWEKL DAGFS +KITP+ G KS
Sbjct: 300 DISIDETSDDRELTELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKS 359
Query: 354 LIEVYP 359
LIEV+P
Sbjct: 360 LIEVFP 365
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 157/356 (44%), Positives = 234/356 (65%)
Query: 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEIN 63
I E+F+ QA L++ IY ++ S LK VELDIP +IH HG+PIT+ +LVS L++
Sbjct: 5 INGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVP 64
Query: 64 PTKADGLFKLMRLLVHTGFFSTANVQSXXXXXXXXXXLTLTSKLFLKDKPYCLSPVVLTL 123
TKA + ++MR + H GFF +Q LT S+L +K CL+P+V +
Sbjct: 65 QTKAGNVQRIMRYMAHNGFFERVRIQEEQEENEAYA-LTAASELLVKGSELCLAPMVECV 123
Query: 124 TDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANL 183
D H L +W + +L+ + + G+ FW+++ +NP++N +N AMASDSQ+ NL
Sbjct: 124 LDPTLSGSYHQLKKWIYEEDLTLFGVSL-GSHFWEFLNENPEYNKSFNDAMASDSQMINL 182
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
++DC F+G+ S+VDVGGG G+ A+II + FP +KC V D P VV + T+NL ++
Sbjct: 183 ALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVG 242
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
GDMFQS+P ADA K I H + D DC +IL++C+EA++S G++GKVIII++VINE +++
Sbjct: 243 GDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDE 302
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
++T KLL D+ M + G ER+E+EW+KLF++AGF +KI+P+ G SLIEVYP
Sbjct: 303 HEITGTKLLMDV-NMACLNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 162/365 (44%), Positives = 237/365 (64%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
MD +Q+E E AQA ++ ++++S SLKCAV+L IP+ I HG+PITL +L +AL
Sbjct: 1 MD-VQSE---EFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNAL 56
Query: 61 --EINPTKADGLFKLMRLLVHTGFFSTANVQSXXXXXXXXXXLTLTSKLFLKDKPYCLSP 118
++P+KA +++LMR+L GF S + LT +S++ LK +P L
Sbjct: 57 VPPVHPSKAPFIYRLMRVLAKNGFCSEEQLDGETEPLYS---LTPSSRILLKKEPLNLRG 113
Query: 119 VVLTLTDQVFVNPCHFLSRWFR--DNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMAS 176
+VLT+ D V + LS W++ D+ +A+ETA+ G FW Y +++ + +N+AMAS
Sbjct: 114 IVLTMADPVQLKAWESLSDWYQNEDDSSTAFETAH-GKNFWGYSSEHMEHAEFFNEAMAS 172
Query: 177 DSQL-ANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD 235
DSQL + L++ + + +F+GL SLVD+GGGTG+ A+ I++ FP +KCTV DLPHVV +
Sbjct: 173 DSQLISKLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLES 232
Query: 236 TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295
+N++F+AGDMF+ IP A+A F K I H + DEDC+KILK C++AI ++G GKVIIID+
Sbjct: 233 KENVEFVAGDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKG--GKVIIIDM 290
Query: 296 VINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGI-KSL 354
V+ K+D L + + DM M+V ER EKEW LF +AGFS +KI P +SL
Sbjct: 291 VMYSDKKDDHLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSL 350
Query: 355 IEVYP 359
IEVYP
Sbjct: 351 IEVYP 355
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 152/356 (42%), Positives = 233/356 (65%)
Query: 9 AKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKAD 68
+ E+ AQAH F ++++ S +SLKCAV+L IP+ IH HG+P+ L L ++L INP+KA
Sbjct: 5 SSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKAP 64
Query: 69 GLFKLMRLLVHTGFFSTA--NVQSXXXXXXXXXXLTLTSKLFLKDKPYCLSPVVLTLTDQ 126
+++LMR+LV G+FS NV S LT ++L LK+ P +VL +
Sbjct: 65 YIYRLMRILVAAGYFSEEEKNVYS----------LTPFTRLLLKNDPLNSISMVLGVNQI 114
Query: 127 VFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLAN-LIV 185
+ + +S WF++ +L+A+ETA+ G FWD+ A++ + ++ MA+DS L + +++
Sbjct: 115 AELKAWNAMSEWFQNEDLTAFETAH-GKNFWDFGAEDK-YGKNFDGVMAADSILVSKMLI 172
Query: 186 KDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGD 245
+ +F+GL SLVDVGGGTG+ A+ I+++FP +KCTV DLPHVV + T+NL+F+ GD
Sbjct: 173 PEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGD 232
Query: 246 MFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI--NEKKED 303
MF+ IP A+A K I H + DE+C+K+LK CR+AI + GKVI+I+ V+ ++K E+
Sbjct: 233 MFEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHEN 292
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+ +A++ D+ MMV ERTE+EW LF +AGFS +KI P+ +S IEVYP
Sbjct: 293 EEAVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 119/330 (36%), Positives = 189/330 (57%)
Query: 40 IPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSXXXXXXXX 98
+ +++ + G RP LP L + + G F +++ T S ++ +
Sbjct: 52 LSQILGEIGVRPCKLPGLHRIMRV--LTVSGTFTIVQPSAET-MSSESDGREPVYKLTTA 108
Query: 99 XXLTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHF-LSRWFRDNELSAYE-----TAND 152
L ++S+ LSP++ + +P L+ WFR +E T
Sbjct: 109 SSLLVSSE---SSATASLSPMLNHVLSPFRDSPLSMGLTAWFRHDEDEQAPGMCPFTLMY 165
Query: 153 GTVFWDYMAKNPDFNSIYNQAMASDSQ-LANLIVKDCQPIFQGLGSLVDVGGGTGSFARI 211
GT W+ ++ N+++N AMA+DS L +++K+ +F G+ SLVDV GG G
Sbjct: 166 GTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGATMA 225
Query: 212 ISEAFPGIKCTVLDLPHVVPKVPDTD--NLKFIAGDMFQSIPPADAFFFKAIFHAFVDED 269
I+ AFP +KCTVLDLPHVV K P + N++F+ GDMF+SIPPA+ K I H + +++
Sbjct: 226 IAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWILHDWSNDE 285
Query: 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEK 329
C+KILK C++AI SR GK+IIID+V+ D +L E +++YD+ +M + G ER E+
Sbjct: 286 CIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYDLHLM-KIGGVERDEQ 344
Query: 330 EWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
EW+K+FL+AGF +KI P+ G++S+IE+YP
Sbjct: 345 EWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
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| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 121/361 (33%), Positives = 188/361 (52%)
Query: 14 EAQAHL--FKIIYNYVSSTSLKCAVELDIPEVIHKH--GRPITLPQLVSALEINPTKADG 69
EA+A L +K ++ + + KCA++L IPE I H +P+TL +L SA+ +P+
Sbjct: 26 EAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLAELSSAVSASPSH--- 82
Query: 70 LFKLMRLLVHTGFFSTANVQSXXXXXXXXXXLTLTSKLFLKDKPYCLSPVVLTLTDQVFV 129
L ++MR LVH G F + L+ + +D L+P VL T +
Sbjct: 83 LRRIMRFLVHQGIFKEIPTKDGLATGYVNTPLSRRLMITRRDGK-SLAPFVLFETTPEML 141
Query: 130 NPCHFLSRWFRDNELSAYETAND---GTVFWDYMAKNPDFNSIYNQAMASDSQ-LANLIV 185
P LS + D G W + NP + + N+AMA D++ + +
Sbjct: 142 APWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVA 201
Query: 186 KDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGD 245
C +F G+ ++VDVGGGTG ++ + FP IK DLPHV+ D ++ + GD
Sbjct: 202 GACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVENVEGD 261
Query: 246 MFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE--- 302
MF SIP DA F K + H + D+DC+KILK C+EA+ + GKV+I++ VI E K+
Sbjct: 262 MFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPP--NIGKVLIVESVIGENKKTMI 319
Query: 303 ----DAQLTEAKLLYDMLMMVAVR-GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357
D +L +L+ DM+MM G ERT KEW+ + +AGF+ +++ + ++SLI
Sbjct: 320 VDERDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIA 379
Query: 358 Y 358
Y
Sbjct: 380 Y 380
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| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
Identities = 83/215 (38%), Positives = 124/215 (57%)
Query: 153 GTVFWDYMAKNPDFNSIYNQAMASDSQ-LANLIVKDCQPIFQGLGSLVDVGGGTGSFARI 211
G W + N + + N+AMA D++ + + CQ +F G+ ++VDVGGGTG I
Sbjct: 111 GKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETMGI 170
Query: 212 ISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCL 271
+ + FP IK DLPHV+ D ++ + GDMF SIP +DA K + H + D+DC+
Sbjct: 171 LVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKDCI 230
Query: 272 KILKRCREAIASRGDRGKVIIIDIVINEKKE-------DAQLTEAKLLYDMLMMVAVR-G 323
KILK C+EA+ + GKV+I++ VI EKK D +L +L DM+MMV G
Sbjct: 231 KILKNCKEAVLP--NIGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTSTG 288
Query: 324 SERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358
ERT KEW+ + +AGF+ +++ ++SLI Y
Sbjct: 289 KERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
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| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 104/348 (29%), Positives = 175/348 (50%)
Query: 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEI-NPTKADGLFK 72
EA ++ V +LK A+ELD+ E++ K+G P++ ++ S L NP L +
Sbjct: 18 EAALFAMQLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDR 77
Query: 73 LMRLLVHTGFFSTANVQSXXXXXXXXXXLTLTSKLFLKDKP-YCLSPVVLTLTDQVFVNP 131
++RLL + +N + L K K++ ++ + L D+V +
Sbjct: 78 ILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMES 137
Query: 132 CHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI 191
+ L D + + A + F +Y +P FN ++N M++ S + + +
Sbjct: 138 WYHLKDAILDGGIP-FNKAYGMSAF-EYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG 195
Query: 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP 251
F+GL SLVDVGGG G+ ++I +P +K DLPHV+ P ++ + GDMF S+P
Sbjct: 196 FEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVP 255
Query: 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL 311
DA F K I H + DE C+K LK C E++ + GKVI+ + ++ E + + T+ +
Sbjct: 256 KGDAIFMKWICHDWSDEHCVKFLKNCYESLP---EDGKVILAECILPETPDSSLSTKQVV 312
Query: 312 LYDMLMMVA-VRGSERTEKEWEKLFLDAGFSHFKIT-PVYGIKSLIEV 357
D +M+ G ERTEKE+E L +GF K+ +G+ +LIE+
Sbjct: 313 HVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGV-NLIEL 359
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003030001 | SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (361 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 3e-86 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 1e-15 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 8e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 6e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.004 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 3e-86
Identities = 101/243 (41%), Positives = 141/243 (58%), Gaps = 7/243 (2%)
Query: 95 EEEAYALTLTSKLFLKDKP-YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDG 153
E Y LT SKL +K + L+P++L D + L R+ +E A
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGG-PPFERAFGM 61
Query: 154 TVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIIS 213
F++Y+ +P+FN ++N+AMA+ S+L + + F GL SLVDVGGGTG+ A I
Sbjct: 62 P-FFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIV 120
Query: 214 EAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKI 273
A+P IK V DLPHV+ P D ++F+ GD F+S+P ADA K + H + DEDC+KI
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKI 180
Query: 274 LKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333
LKRC EA+ GKVI++++V+ E +D TE LL D+ M+V G ERTEKEW K
Sbjct: 181 LKRCYEAL---PPGGKVIVVEMVLPEDPDDDLETEV-LLLDLNMLVLNGGKERTEKEWRK 236
Query: 334 LFL 336
L
Sbjct: 237 LLS 239
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This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-15
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 31 SLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLV 78
LKCA+EL IP++I KHG+P++ +L S L +NP L +L+RLL
Sbjct: 2 VLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
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This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 8e-11
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 11/111 (9%)
Query: 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMF-Q 248
++DVGGG G + + + FP + T+L+LP + V + D ++ IA D++ +
Sbjct: 152 KMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE 211
Query: 249 SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299
S P ADA F I ++ ++ + K+ +A+ S G+++I+D+VI++
Sbjct: 212 SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDD 259
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Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-06
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPDT------DNLKFIAGDMFQ 248
++D+G GTGS A ++ FPG + T +DL P ++ + + F+ GD
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 249 SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296
F A+F D L++L + G ++++ V
Sbjct: 63 --ALDLLEGFDAVFIGGGGGDLLELLDALASLLKP----GGRLVLNAV 104
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Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 199 VDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP---------DTDNLKFIAGDMF- 247
+D+G GTG+ R + EA PG++ T +D+ P + D ++ D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 248 QSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRG 285
D + H D +L+ R + G
Sbjct: 61 LDPGSFDVVVASNVLHHL--ADPRAVLRNLRRLLKPGG 96
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Members of this family are SAM dependent methyltransferases. Length = 98 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.75 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.74 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.73 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.72 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.72 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.71 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.64 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.62 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.62 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.62 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.62 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.61 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.61 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.6 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.6 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.59 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.59 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.59 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.59 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.59 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.59 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.57 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.55 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.54 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.53 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.52 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.51 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.51 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.51 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.49 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.49 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.49 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.49 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.47 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.46 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.45 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.44 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.43 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.42 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.41 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.41 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.41 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.41 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.39 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.38 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.37 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.36 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.36 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.35 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.34 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.31 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.29 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.29 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.28 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.25 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.24 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.23 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.23 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.22 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.21 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.2 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.2 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.18 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.17 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.16 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.16 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.12 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.12 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.1 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.1 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.08 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.07 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.07 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.06 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.04 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.03 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.02 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.02 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.01 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.01 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.0 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.0 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.99 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.95 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.95 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.95 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.94 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.93 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.93 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.93 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.92 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.92 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.91 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.9 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.9 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.9 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.89 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.89 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.87 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.86 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.84 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.84 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.83 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.82 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.81 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.8 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.78 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.77 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.74 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.7 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.7 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.7 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.63 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.62 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.62 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.6 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.59 | |
| PLN02366 | 308 | spermidine synthase | 98.56 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.55 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.55 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.55 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.54 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.49 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.48 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.46 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.45 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.42 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.4 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.4 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.38 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.38 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.37 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.36 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.35 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.33 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.33 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.33 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.33 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.26 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.26 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.26 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.25 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.24 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.24 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.24 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.24 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.23 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.21 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.17 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.16 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.15 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.14 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.14 | |
| PLN02476 | 278 | O-methyltransferase | 98.14 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.13 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.1 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.09 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.09 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.05 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.03 | |
| PLN02823 | 336 | spermine synthase | 98.01 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.0 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.99 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.94 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.92 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.91 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.9 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.9 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.88 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.85 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.84 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.84 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.82 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.8 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.79 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.73 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.72 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.71 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.64 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.59 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.58 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.58 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.58 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.57 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.56 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.55 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.5 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.48 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.47 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.43 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.41 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 97.41 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.37 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.36 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.22 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.18 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.16 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.11 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.06 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 97.02 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.01 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.98 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.97 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.85 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.84 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.81 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.81 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.78 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.77 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.77 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.71 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.67 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.64 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.62 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.62 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.61 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.61 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.53 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.52 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.48 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 96.41 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.39 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 96.38 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.34 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 96.33 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 96.33 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 96.28 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.25 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.25 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.2 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.18 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.15 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.13 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.12 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.07 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.06 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.04 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 96.03 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 96.0 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.96 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 95.94 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 95.93 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 95.92 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.91 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 95.9 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.83 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.8 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.79 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 95.75 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.74 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.7 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.69 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 95.65 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.63 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.59 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 95.49 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.45 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.41 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 95.17 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.09 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.02 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 95.02 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 94.66 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 94.66 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.58 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 94.51 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.37 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 94.35 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.33 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 94.27 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 94.27 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 94.26 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.23 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 94.19 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 94.09 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.96 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 93.86 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 93.85 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 93.77 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 93.69 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 93.66 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 93.65 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 93.61 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.47 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.43 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 93.37 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 93.35 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 93.24 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 93.21 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 93.18 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.15 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 93.15 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.13 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 93.09 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 93.09 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 93.05 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 93.03 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 92.92 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 92.89 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 92.84 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 92.8 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 92.74 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 92.69 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 92.5 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 92.47 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 92.47 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 92.46 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 92.41 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 92.36 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 92.36 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 92.22 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 92.06 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 91.95 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 91.92 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 91.91 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 91.8 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 91.14 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 91.05 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 91.05 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 91.02 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 90.85 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 90.74 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 90.71 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 90.5 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 90.49 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 90.38 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 90.16 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 90.16 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 89.5 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 89.37 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 88.86 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 88.58 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 88.09 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 88.03 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.94 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 87.94 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 87.86 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 87.76 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 87.73 | |
| PF02319 | 71 | E2F_TDP: E2F/DP family winged-helix DNA-binding do | 87.72 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 87.54 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 87.43 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 87.26 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 87.22 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 87.19 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 87.14 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.84 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 86.71 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 86.57 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 86.49 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 86.11 | |
| PF05732 | 165 | RepL: Firmicute plasmid replication protein (RepL) | 86.01 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 85.98 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 85.96 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 85.6 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 85.3 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 84.86 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 84.85 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 84.6 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 84.51 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.39 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 84.26 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 83.97 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 83.66 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 83.48 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 83.45 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 83.44 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 83.34 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 83.26 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 83.12 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 82.87 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 82.64 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 82.55 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 82.55 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 82.45 | |
| PF05584 | 72 | Sulfolobus_pRN: Sulfolobus plasmid regulatory prot | 82.3 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 82.28 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 82.23 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 82.08 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 81.97 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 81.68 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 81.54 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 81.21 | |
| PRK05638 | 442 | threonine synthase; Validated | 81.13 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 80.22 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=290.92 Aligned_cols=331 Identities=32% Similarity=0.494 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcC--CCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALE--INPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
++..+++++++++...+++.+|+||||||+|++++ + ..|+|..+- .+|..+..+.|+||.|++.++++..-..
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-- 79 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-- 79 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec--
Confidence 44568999999999999999999999999999842 2 777777766 4555788999999999999999877410
Q ss_pred ccCccceEeccccccccccCC-CCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHH
Q 018205 92 QQQEEEAYALTLTSKLFLKDK-PYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIY 170 (359)
Q Consensus 92 ~~~~~~~~~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (359)
.. .|.+++..+++.++. ..++..++........++.|..+.++++.+. .+|..++ |...++|...+......+
T Consensus 80 ---~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~-G~~l~~~~~~~~~~~~~~ 153 (342)
T KOG3178|consen 80 ---GE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAH-GMMLGGYGGADERFSKDF 153 (342)
T ss_pred ---ce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCcccc-chhhhhhcccccccHHHH
Confidence 12 899999999777443 3577777777777788999999999999987 5788888 878899999999888999
Q ss_pred HHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCC-CCceEeeCCCCC
Q 018205 171 NQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDT-DNLKFIAGDMFQ 248 (359)
Q Consensus 171 ~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~d~~~ 248 (359)
+.+|...+... +.+++.+. .+++....||||+|.|..+..+...||+++.+-+|+|.+++.|... +.|+.+.+|+|+
T Consensus 154 ~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq 232 (342)
T KOG3178|consen 154 NGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQ 232 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccc
Confidence 99999888877 77777776 4778899999999999999999999999999999999999998866 889999999999
Q ss_pred CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC-CCcchHHHHHHHhhhhhhhhhc-CCccc
Q 018205 249 SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE-KKEDAQLTEAKLLYDMLMMVAV-RGSER 326 (359)
Q Consensus 249 ~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 326 (359)
+.|..|+|++.++||||+|+++.++|++|++.|+| +|.|++.|.+.+. ...+.........+|+.|+.+. +|+.|
T Consensus 233 ~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gker 309 (342)
T KOG3178|consen 233 DTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKER 309 (342)
T ss_pred cCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceec
Confidence 99999999999999999999999999999999999 9999999998875 2222111123356788888775 59999
Q ss_pred CHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 327 TEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.+||+.++.++||....+.-.+..+++|+++|
T Consensus 310 t~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 310 TLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred cHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 999999999999999999999999999999886
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=281.13 Aligned_cols=289 Identities=21% Similarity=0.371 Sum_probs=210.0
Q ss_pred HHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 27 VSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.+++|++|+++||||.|.+ +|.|++|||+++|+ +++.++|||++|+++|+|++. +++|++|+.++
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~---------~~~y~~t~~~~ 67 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE---------DGKWSLTEFAD 67 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec---------CCcEecchhHH
Confidence 35789999999999999987 79999999999999 789999999999999999987 58999999998
Q ss_pred ccccCCCCC----hhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHh-hcccch
Q 018205 107 LFLKDKPYC----LSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA-SDSQLA 181 (359)
Q Consensus 107 ~l~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~ 181 (359)
.++.+++.. +.....+... .....|.+|.++++++. +|...+ .+....++. ..|...|. ......
T Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r~~~--~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~ 137 (306)
T TIGR02716 68 YMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVRGQK--NFKGQV------PYPPVTRED-NLYFEEIHRSNAKFA 137 (306)
T ss_pred hhccCCccchhhhcCchHHHHHH-HHHHHHHhHHHHhcCCc--cccccc------CCCCCCHHH-HHhHHHHHHhcchhH
Confidence 666544321 1122222211 12345789999998543 233222 111111222 23333333 333333
Q ss_pred -HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCCC
Q 018205 182 -NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 -~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p~ 252 (359)
+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ ++|.
T Consensus 138 ~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 138 IQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 56667666 67788999999999999999999999999999999888776642 4689999999986 6778
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHH-HHhhhhhhhhhcCCcccCHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA-KLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
+|+|++++++|+|+++++.++|++++++|+| ||+++|.|...++..... +... .......+.... ...++.++|
T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~ 290 (306)
T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV-LGFKEQARY 290 (306)
T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc-ccCCCHHHH
Confidence 9999999999999988888999999999999 999999998876544221 1111 111111111111 123458999
Q ss_pred HHHHHHcCCceeEEE
Q 018205 332 EKLFLDAGFSHFKIT 346 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~ 346 (359)
.++|+++||+.+++.
T Consensus 291 ~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 291 KEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHcCCCeeEec
Confidence 999999999987754
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=270.29 Aligned_cols=234 Identities=33% Similarity=0.689 Sum_probs=199.4
Q ss_pred cceEeccccccccccCCC-CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHH
Q 018205 96 EEAYALTLTSKLFLKDKP-YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 174 (359)
+++|++|+.++.|+.+++ .++..++.+......+..|.+|.+++++|. ++|...+ |.++|+++.++++..+.|+.+|
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAF-GTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHH-SS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhc-CCcHHHhhhhChHHHHHHHHHH
Confidence 689999999998887765 456666666556678899999999999998 7888888 8889999999999999999999
Q ss_pred hhcccch--HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCCC
Q 018205 175 ASDSQLA--NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPP 252 (359)
Q Consensus 175 ~~~~~~~--~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~ 252 (359)
...+... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.+|+++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred Hhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9877655 45566666 7888999999999999999999999999999999999999988899999999999988999
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDR--GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~g--G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
+|+|+++++||+|+++++.++|++++++|+| | |+|+|.|.+.++....+........+|+.|+...+|+.||.+|
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999999999999999999999999 8 9999999999988766522223357899999998999999999
Q ss_pred HHHHHH
Q 018205 331 WEKLFL 336 (359)
Q Consensus 331 ~~~ll~ 336 (359)
|++||.
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=144.00 Aligned_cols=165 Identities=18% Similarity=0.298 Sum_probs=122.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIPP- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p~- 252 (359)
+.++.... ..++.+|||||||||.++..+++..+..+++++|+++ |++.|++ ...++|+.+|+.+ ++|+
T Consensus 41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 45555554 3468999999999999999999999989999999965 9998873 1238999999966 6774
Q ss_pred -ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hhhh----------
Q 018205 253 -ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MMVA---------- 320 (359)
Q Consensus 253 -~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------- 320 (359)
||+|.+++.|++++|. .+.|++++|+|+| ||++++.|...+...... .....+... .+-.
T Consensus 119 sFD~vt~~fglrnv~d~--~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~ 190 (238)
T COG2226 119 SFDAVTISFGLRNVTDI--DKALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAE 190 (238)
T ss_pred ccCEEEeeehhhcCCCH--HHHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChH
Confidence 9999999999999866 5699999999999 999999999887664321 111111111 1000
Q ss_pred -------cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEE
Q 018205 321 -------VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIE 356 (359)
Q Consensus 321 -------~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~ 356 (359)
..-...+.+++.++++++||+.+..... .+...+..
T Consensus 191 ~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 191 AYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 0112468999999999999998886555 33333433
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-18 Score=149.12 Aligned_cols=168 Identities=19% Similarity=0.335 Sum_probs=83.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p~ 252 (359)
+.+++... ..++.+|||+|||+|..+..++++. |+.+++++|++. |++.|++ ..+|+++++|..+ ++++
T Consensus 37 ~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 37 RKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 34444444 4567899999999999999999875 678999999965 9998872 3589999999965 5653
Q ss_pred --ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-----hhhcC---
Q 018205 253 --ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-----MVAVR--- 322 (359)
Q Consensus 253 --~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--- 322 (359)
||+|++++.+|+++|. .+.|++++++||| ||+++|.|...+........ ...++...+ +...+
T Consensus 115 ~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~--~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDR--ERALREMYRVLKP---GGRLVILEFSKPRNPLLRAL--YKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp T-EEEEEEES-GGG-SSH--HHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHH--HHH-------------------
T ss_pred CceeEEEHHhhHHhhCCH--HHHHHHHHHHcCC---CeEEEEeeccCCCCchhhce--eeeeeccccccccccccccccc
Confidence 9999999999999876 4599999999999 99999999988875321100 001111000 00000
Q ss_pred --------CcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 323 --------GSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 323 --------g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
....+.+++.++|+++||+.++..+. .+..++..++
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp ---------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccC
Confidence 12457899999999999999888776 4555555544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=142.96 Aligned_cols=160 Identities=22% Similarity=0.271 Sum_probs=117.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC---------CCCceEeeCCCCC-CCC--CccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD---------TDNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
..+..+|||||||+|.++..++++. |+.+++++|+++ |++.|++ ..+++++.+|+.+ +++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999998875 567999999965 8887752 2478999999955 455 399999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh--h-h------------hcC
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM--M-V------------AVR 322 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~--~-~------------~~~ 322 (359)
+++++|++++. .++|++++++|+| ||.+++.+...++....... ...+....+ . . ..-
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999999765 5699999999999 99999999876654211100 000110000 0 0 000
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeC-CceeEEEEe
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVY-GIKSLIEVY 358 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 358 (359)
...++.+++.++++++||+.++..... +...+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 135799999999999999999888774 555666554
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=138.85 Aligned_cols=168 Identities=15% Similarity=0.228 Sum_probs=122.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. ..+..+|||+|||+|.++..+++.. |+.+++++|++ .+++.+++ .++++++.+|+.+ +++
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 45566665 5667899999999999999999885 67899999995 48776652 3578999999865 344
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH-Hhhh---------------
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK-LLYD--------------- 314 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~-~~~~--------------- 314 (359)
.||+|++..++|++++. .++|+++.++|+| ||.+++.+...++..... ... .++.
T Consensus 113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~ 184 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQPTIPGFK---QLYFFYFKYIMPLFGKLFAKSYK 184 (231)
T ss_pred CCccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCCCChHHH---HHHHHHHcChhHHhhHHhcCCHH
Confidence 49999999999998765 5699999999999 999998886654432111 100 0000
Q ss_pred -hhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC-CceeEEEEeC
Q 018205 315 -MLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY-GIKSLIEVYP 359 (359)
Q Consensus 315 -~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 359 (359)
...+.......++.+++.++|+++||+.+++.... +..+++.++|
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 185 EYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00000011134688999999999999999998885 7788888775
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=147.14 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=114.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..+++.+ |+++++++|++ .|++.|++ ..+++++.+|+.+ +.+.+|+|+++.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999874 78999999995 48887762 3478999999965 5567999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh------------------hcCC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV------------------AVRG 323 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g 323 (359)
+|++++++...++++++++|+| ||.+++.+.......... . .+..+.... ...-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~---~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKIN---H--LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHH---H--HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 9999887788999999999999 999999997765443211 0 011110000 0112
Q ss_pred cccCHHHHHHHHHHcCCceeEEEEeCCceeE
Q 018205 324 SERTEKEWEKLFLDAGFSHFKITPVYGIKSL 354 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~v 354 (359)
...|.+++.++++++||+.+++........+
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~ 234 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQCFNFGS 234 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHHHHhHhH
Confidence 3569999999999999997665444333333
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=146.15 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=111.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH--CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA--FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~v 261 (359)
.+..+|||||||+|..+..+++. +|+.+++++|++ .|++.|++ ..+++++++|+.+ +.+.+|+|+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 46689999999999999998884 588999999995 49988762 3479999999965 4567999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH-HHHHHHh----hhhhh--hh-----hcC-CcccCH
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ-LTEAKLL----YDMLM--MV-----AVR-GSERTE 328 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~-~~~~~~~----~~~~~--~~-----~~~-g~~~t~ 328 (359)
+|++++++...++++++++|+| ||.+++.|........... +...... .++.. .. ..+ -...|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999887778899999999999 9999999977654432211 0000000 00000 00 001 123589
Q ss_pred HHHHHHHHHcCCceeEEEEe
Q 018205 329 KEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~~ 348 (359)
++..++|+++||+.+..+..
T Consensus 212 ~~~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 212 ETHKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHHHcCchhHHHHHH
Confidence 99999999999997655433
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-16 Score=141.20 Aligned_cols=155 Identities=17% Similarity=0.310 Sum_probs=117.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|+++ +++.|++ .+++.+..+|+.+ ++| .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 45666666 6778899999999999999998775 67999999955 7776652 4679999999865 455 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..+++|++.++..++|++++++|+| ||.+++.+.......... .. .... .........+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---EE--FKAY--IKKRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---HH--HHHH--HHhcCCCCCCHHHHHH
Confidence 999999999888866678899999999999 999999988665432211 10 0000 0011223568999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+.++.....
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999887754
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=139.80 Aligned_cols=157 Identities=17% Similarity=0.214 Sum_probs=110.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCC--CCccEEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSI--PPADAFFF 258 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~--p~~D~i~~ 258 (359)
..+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+++ +++.|++ .+++++.+|+.+.. +.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 56677776 5667899999999999999999999999999999955 8888865 46899999985422 35999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH--Hhhhhhhh---hhcCCcccCHHHHHH
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK--LLYDMLMM---VAVRGSERTEKEWEK 333 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~g~~~t~~~~~~ 333 (359)
+.++|++++. .+++++++++|+| ||.+++.................. ..+..... ...+....+.+++.+
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 9999999765 5699999999999 898887643211111000000000 00000000 001223568999999
Q ss_pred HHHHcCCceeEEE
Q 018205 334 LFLDAGFSHFKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
+|+++||++....
T Consensus 171 ~l~~aGf~v~~~~ 183 (255)
T PRK14103 171 LLTDAGCKVDAWE 183 (255)
T ss_pred HHHhCCCeEEEEe
Confidence 9999999854433
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=139.60 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=108.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..+++++ +.+++++|++. +++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 77999999965 7776552 3579999999965 444 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch-HHH-HHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA-QLT-EAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
+||+++. .+++++++++|+| ||.+++.+.......... ... .....++............+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999765 5699999999999 999999886543221110 000 00001111000001112358999999999999
Q ss_pred CceeEEEEeC
Q 018205 340 FSHFKITPVY 349 (359)
Q Consensus 340 f~~~~~~~~~ 349 (359)
|..+++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9998887653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-14 Score=128.25 Aligned_cols=168 Identities=18% Similarity=0.254 Sum_probs=120.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p 251 (359)
..++..+. ..+..+|||+|||+|.++..+++.+| +.+++++|++. +++.+++ ..++++..+|+.+ +.+
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34455554 34568999999999999999999987 68999999954 7666552 3578999999865 232
Q ss_pred --CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-----hhcC--
Q 018205 252 --PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-----VAVR-- 322 (359)
Q Consensus 252 --~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-- 322 (359)
.||+|++++++|++++. ..+|+++.++|+| ||.+++.+...+...... .....+...++ ...+
T Consensus 119 ~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 190 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNA 190 (239)
T ss_pred CCCccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCc
Confidence 49999999999998765 5699999999999 999999887665432110 10000000000 0000
Q ss_pred ----------CcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEeC
Q 018205 323 ----------GSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVYP 359 (359)
Q Consensus 323 ----------g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 359 (359)
...++.++|.++|+++||+.+++... .+...++.+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 191 EAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 12457899999999999999999986 56778887764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=125.02 Aligned_cols=168 Identities=17% Similarity=0.189 Sum_probs=119.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCC--C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p--~ 252 (359)
..++..+. ..+..+|||+|||+|.++..+++.+|. .+++++|++ .+++.+++ ..++++..+|+.+ +.+ .
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 34455444 346789999999999999999999986 799999995 46665542 3578999999865 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc--------C--
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV--------R-- 322 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-- 322 (359)
||+|+++.++|+.++. ..++++++++|+| ||.+++.+...+...... .....+...++... +
T Consensus 107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAY 178 (223)
T ss_pred EEEEEEeeeeCCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhh
Confidence 9999999999988665 5699999999999 999999887654432110 00000000010000 0
Q ss_pred -------CcccCHHHHHHHHHHcCCceeEEEEeCC-ceeEEEEeC
Q 018205 323 -------GSERTEKEWEKLFLDAGFSHFKITPVYG-IKSLIEVYP 359 (359)
Q Consensus 323 -------g~~~t~~~~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 359 (359)
....+.++|..+|+++||+.+++.+..+ ...++++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 179 TYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1235789999999999999999998854 466777764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=123.98 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=96.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCCCccEEEEcchhccCCc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p~~D~i~~~~vl~~~~~ 267 (359)
..+..+|||||||+|.++..+++. +.+++++|++. +++. ..+.....+... +...||+|+++.+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 456889999999999999999776 34999999954 6655 222333222211 1235999999999999986
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
. ..+|++++++|+| ||.+++.++........ ... ..............++.++|..+|+++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPSPR----SFL-KWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH----HHH-HCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchhhh----HHH-hcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 6799999999999 89988888776431110 111 111111101334678999999999999999875
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-15 Score=132.99 Aligned_cols=153 Identities=15% Similarity=0.160 Sum_probs=107.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-C-CCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-S-IPP 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~-~p~ 252 (359)
.++..+. ..+..+|||||||+|.++..++...+. .++|+|++. ++..++ ...++.+...++.+ + ...
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 4555554 344689999999999999998887654 799999966 654321 24678888888743 2 235
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++||++++ ..+|++++++|+| ||.+++.+...+...... ...... + ..|. .-....+.+++.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~r-y-~k~~--nv~flpS~~~L~ 258 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDR-Y-AKMK--NVYFIPSVSALK 258 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHH-H-Hhcc--ccccCCCHHHHH
Confidence 9999999999999766 4599999999999 999998876654332110 000000 0 0010 011245899999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
.+|+++||+.+++...
T Consensus 259 ~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 259 NWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHCCCeEEEEEec
Confidence 9999999999988765
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=134.84 Aligned_cols=140 Identities=25% Similarity=0.308 Sum_probs=108.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--CccEEEEcchhccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~ 265 (359)
.+..+|||||||+|.++..+++..+..+++++|++. +++.|++ ..+++++.+|+.+ +++ .||+|+++.++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 346799999999999999999988888999999954 8877763 3578999999854 443 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++.+ ++|++++++|+| ||.+++.+...+... ......+..+ ...+.+++.++|+++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~------~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFW------LSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchh------HHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 8774 599999999999 999988775543210 0001111111 1358899999999999999998
Q ss_pred EEeC
Q 018205 346 TPVY 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-15 Score=134.65 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=107.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-CCC-C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~~p-~ 252 (359)
.+...++ .....+|||||||+|.++..+++..+. +++|+|++. ++..++ ...++.++.+|+.+ +.+ .
T Consensus 113 ~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~ 189 (322)
T PRK15068 113 RVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKA 189 (322)
T ss_pred HHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCC
Confidence 4445554 234689999999999999999998765 699999965 554321 24579999999844 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++||..+. ..+|++++++|+| ||.+++.+...+...... ......+.. +. .....+|.+++.
T Consensus 190 FD~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~--~~~~lps~~~l~ 259 (322)
T PRK15068 190 FDTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MR--NVYFIPSVPALK 259 (322)
T ss_pred cCEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Cc--cceeCCCHHHHH
Confidence 9999999999998766 4699999999999 899988766554432211 000000100 10 011245899999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
.+|+++||+.+++...
T Consensus 260 ~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 260 NWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHcCCceEEEEeC
Confidence 9999999999988765
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=141.32 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=115.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~ 252 (359)
..+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|++. +++.|+. ..++++..+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34566665 5667899999999999999998876 77999999964 7776642 4578999999966 444 3
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..+++|+++. .++|++++++|+| ||.+++.+.......... ...... ...+...++.+++.
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~-----~~~g~~~~~~~~~~ 399 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEYI-----KQRGYDLHDVQAYG 399 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHHH-----HhcCCCCCCHHHHH
Confidence 9999999999999776 4699999999999 999999987765433221 111111 11234567899999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++++++||.++.+...
T Consensus 400 ~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 400 QMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHCCCeeeeeecc
Confidence 9999999999877654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-15 Score=128.58 Aligned_cols=156 Identities=18% Similarity=0.249 Sum_probs=125.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
+.+++++. +.++++|||||||.|.+++..++.+ +++|+|+++|. +.+.+++ .+++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 56777887 8899999999999999999999999 99999999965 7666552 468999999995433349
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|-|++..+++|+..+....++++++++|+| ||.+++.....+...... ...+..-. ...+|...+.+++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i~~y--iFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFIDKY--IFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHHHHh--CCCCCcCCCHHHHHH
Confidence 999999999999998889999999999999 999999998887754310 00111111 125788889999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
..+++||.+.++...+
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999998876653
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=123.03 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=106.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-~ 252 (359)
+.+++.++ ..+..+|||+|||+|..+..++++ +.+++++|++. +++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 46666665 445689999999999999999986 67899999965 8876652 2458888899854 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|+++.++|++++++...++++++++|+| ||.+++++....+..... . .....++.+++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~-------~~~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------V-------GFPFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------C-------CCCCccCHHHHH
Confidence 9999999999998887888999999999999 899777665443321100 0 001235788899
Q ss_pred HHHHHcCCceeEEEE
Q 018205 333 KLFLDAGFSHFKITP 347 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~ 347 (359)
++|+ ||++++...
T Consensus 158 ~~~~--~~~~~~~~~ 170 (197)
T PRK11207 158 RYYE--GWEMVKYNE 170 (197)
T ss_pred HHhC--CCeEEEeeC
Confidence 8886 898877643
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=121.39 Aligned_cols=169 Identities=22% Similarity=0.302 Sum_probs=120.3
Q ss_pred HHHHHHHhhccc-ch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC------CeEEEeec-ccccccCCC---
Q 018205 168 SIYNQAMASDSQ-LA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG------IKCTVLDL-PHVVPKVPD--- 235 (359)
Q Consensus 168 ~~~~~~m~~~~~-~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~--- 235 (359)
...+++|..... .. +-.+.++. .....++|||+||||..+..+.+.-+. .+++++|+ |+|+..+++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 334556654333 22 45566665 445699999999999999999998766 78999999 668877652
Q ss_pred ------CCCceEeeCCCCC-CCCC--ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 236 ------TDNLKFIAGDMFQ-SIPP--ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 236 ------~~~v~~~~~d~~~-~~p~--~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
..++.++++|..+ ++|. ||.+++.+-+.++++. .+.|++++++||| ||++.+.|...-++..-..+
T Consensus 152 ~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~--~k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 152 KRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHI--QKALREAYRVLKP---GGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred hcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCH--HHHHHHHHHhcCC---CcEEEEEEccccccHHHHHH
Confidence 4569999999965 6764 9999999999999887 5599999999999 99999999776653211100
Q ss_pred HHHHHhhhh---------------hhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 307 TEAKLLYDM---------------LMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 307 ~~~~~~~~~---------------~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
.. ...++. ..+...=.+..+.+++..+.+++||+.+.
T Consensus 227 y~-~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 227 YD-QYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HH-hhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 00 001111 00101111356899999999999999886
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=127.47 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=106.1
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhccC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAF 265 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~ 265 (359)
++|||||||+|.++..+++.+|+.+++++|++. +++.++. .+++++...|+.. +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999999999999999999954 7766652 4678999999854 344 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++. ..++++++++|+| ||.+++.+.......... . . .......+.++|.++++++||+.++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~-----~-----~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE---H-----E-----ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc---c-----c-----ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 764 5799999999999 999999887543211100 0 0 01122458999999999999999988
Q ss_pred EEeC
Q 018205 346 TPVY 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7763
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=115.52 Aligned_cols=98 Identities=23% Similarity=0.505 Sum_probs=81.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCC-CC--CCCCccEEEEcc-h
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDM-FQ--SIPPADAFFFKA-I 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~-~~--~~p~~D~i~~~~-v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|++ .+++.|+ ..++++++++|+ .. ..+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 3679999999999999999999899999999995 4887766 268999999999 33 234599999999 6
Q ss_pred hccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++++. .++..++++++++.|+| ||.++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 66443 35778899999999999 88888765
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-15 Score=130.69 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC--CCC--CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ--SIP--PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~--~~p--~~D~i~~~~ 260 (359)
.+..+|||+|||+|.++..+++. +.+++++|++ ++++.|++ .++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 5789999995 48887762 3578999999843 222 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-----hhcCCcccCHHHHHHHH
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-----VAVRGSERTEKEWEKLF 335 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~t~~~~~~ll 335 (359)
++|+++++ ..+|+++.++|+| ||.+++.............+..........+. .......++.+++.++|
T Consensus 121 vl~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADP--KSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCH--HHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 99999776 4699999999999 89998876553321000000000000000000 00011246889999999
Q ss_pred HHcCCceeEEEEeCCce
Q 018205 336 LDAGFSHFKITPVYGIK 352 (359)
Q Consensus 336 ~~aGf~~~~~~~~~~~~ 352 (359)
+++||+++.+.-+..+.
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998777654443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=133.13 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=104.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
+..+|||||||+|.++..+++. +.+++++|++. +++.|+. ..+++++++|+.+ +.+ .||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988864 77999999954 8887762 2478999999843 222 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-hhhcC----CcccCHHHHHHHHHH
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-MVAVR----GSERTEKEWEKLFLD 337 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----g~~~t~~~~~~ll~~ 337 (359)
||+++++ .+|++++++|+| ||.+++.+....... +........... +...+ .+.++.+++.++|++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence 9998774 599999999999 899888876432110 100000000000 00111 236799999999999
Q ss_pred cCCceeEEEEe
Q 018205 338 AGFSHFKITPV 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+++++..+
T Consensus 280 aGf~i~~~~G~ 290 (322)
T PLN02396 280 ASVDVKEMAGF 290 (322)
T ss_pred cCCeEEEEeee
Confidence 99999988655
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=130.14 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=108.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~~p~~ 253 (359)
..+++++. +.++.+|||||||.|.++..+++++ +++++++.++. ..+.++ ..+++++...|+.+--+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677776 7888999999999999999999998 89999999965 666543 2578999999995433369
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH-HHHhhhhhhhhhcCCcccCHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE-AKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
|.|++..+++|+.++....+++++.++|+| ||.+++............ ... ...++.-. ...+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~-~~~~~~~~i~ky--iFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA-ERRSSSDFIRKY--IFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH-CTTCCCHHHHHH--TSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh-hcCCCceEEEEe--eCCCCCCCCHHHHH
Confidence 999999999999988888999999999999 899988777765532110 000 00111111 12577888999999
Q ss_pred HHHHHcCCceeEEEEeC
Q 018205 333 KLFLDAGFSHFKITPVY 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
..++++||++.++...+
T Consensus 203 ~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHTT-EEEEEEE-H
T ss_pred HHHhcCCEEEEEEEEcC
Confidence 99999999999887664
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-15 Score=121.03 Aligned_cols=138 Identities=25% Similarity=0.403 Sum_probs=99.3
Q ss_pred CCCCeEEEeCCCcchHHHHHH-HHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIIS-EAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~~ 260 (359)
.+..+|||+|||+|.++..++ +.+|+.+++++|+++ +++.|+. .+++++.++|+.+ + ++ .||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 557889999999955 9888773 4589999999977 3 32 599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh-cCCcccCHHHHHHHHHHcC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA-VRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~t~~~~~~ll~~aG 339 (359)
++|++++. ..+++++.++|++ +|.+++.+.......... +..... +....... ..+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999776 4599999999999 899998888732211110 111111 00111100 1112 7789999999998
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.6e-14 Score=124.92 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=107.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCC--CCccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSI--PPADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~--p~~D~i~ 257 (359)
..++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+++ +++.|++ ..++.+..+|+.+.. ..||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 56777776 5677899999999999999999999999999999965 8888764 467899999985422 2599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHh--hhhhhhhh--cCCcccCHHHHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLL--YDMLMMVA--VRGSERTEKEWEK 333 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~~~t~~~~~~ 333 (359)
++.++|++++. .+++++++++|+| ||.+++.................... +...+... ......+..++.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999998765 5699999999999 88887753211111100000000000 00000000 1123457788999
Q ss_pred HHHHcCCce
Q 018205 334 LFLDAGFSH 342 (359)
Q Consensus 334 ll~~aGf~~ 342 (359)
++.++|+.+
T Consensus 174 ~l~~~g~~v 182 (258)
T PRK01683 174 ALAPAACRV 182 (258)
T ss_pred HHHhCCCce
Confidence 999999874
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-14 Score=126.54 Aligned_cols=146 Identities=18% Similarity=0.331 Sum_probs=109.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~ 260 (359)
+.+..+|||+|||+|..+..+++.. ++.+++++|++ .+++.|++ .+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999888777664 56689999995 48887763 3588999999854 444 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
++|++++. .+++++++++|+| ||.+++.+.......... ...+..++....+..++.++|.++|+++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRGELPEE------IRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccCCCCHH------HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99988765 4699999999999 999999987764432211 111222222223456789999999999999
Q ss_pred ceeEEEEe
Q 018205 341 SHFKITPV 348 (359)
Q Consensus 341 ~~~~~~~~ 348 (359)
..+++...
T Consensus 224 ~~v~i~~~ 231 (272)
T PRK11873 224 VDITIQPK 231 (272)
T ss_pred CceEEEec
Confidence 98877543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=138.20 Aligned_cols=142 Identities=20% Similarity=0.323 Sum_probs=108.5
Q ss_pred CChhhhcccCccHHHHHHHHHhhcccch---HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-c
Q 018205 154 TVFWDYMAKNPDFNSIYNQAMASDSQLA---NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-V 229 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~---~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~ 229 (359)
..+|+++.++++...+|...|.....+. ......++ +.+..+|||||||+|.++..+++.+|+.+++++|++. |
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 5788999888888888876655432221 22222333 3457899999999999999999999999999999966 8
Q ss_pred cccCCC-----CCCceEeeCCCCC-C--CC--CccEEEEcchhccC-----------CchHHHHHHHHHHHhcccCCCCc
Q 018205 230 VPKVPD-----TDNLKFIAGDMFQ-S--IP--PADAFFFKAIFHAF-----------VDEDCLKILKRCREAIASRGDRG 288 (359)
Q Consensus 230 ~~~a~~-----~~~v~~~~~d~~~-~--~p--~~D~i~~~~vl~~~-----------~~~~~~~~L~~~~~~L~p~~~gG 288 (359)
++.|++ ..++.++++|+.+ + ++ .||+|+++.++|++ ++++..++|++++++|+| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 887762 3467888899854 2 33 49999999999975 245678899999999999 99
Q ss_pred EEEEEeeecCCC
Q 018205 289 KVIIIDIVINEK 300 (359)
Q Consensus 289 ~lli~~~~~~~~ 300 (359)
.+++.+...+..
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999998765543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=121.59 Aligned_cols=157 Identities=17% Similarity=0.264 Sum_probs=110.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~ 252 (359)
.++..+. +.+..+|||+|||+|.++..+++.+ |+.+++++|++. +++.+++ ..++++...|+.. +++ .
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 4455555 5677899999999999999999987 788999999954 6665542 4678999999854 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch-HHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA-QLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
||+|++.++++++++. ..++++++++|+| ||.+++.++......... ............. ......++..+|
T Consensus 88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 160 (241)
T PRK08317 88 FDAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRL 160 (241)
T ss_pred ceEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHH
Confidence 9999999999999876 5599999999999 999999875432111000 0000111111111 111233456789
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.++|+++||..+++...
T Consensus 161 ~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 161 PGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHcCCCceeEEEE
Confidence 99999999998776554
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=120.88 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=114.9
Q ss_pred hhhhcccCccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC
Q 018205 156 FWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV 233 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a 233 (359)
.|+.++..+.....+...+....... ..+++.+.....+..+|||+|||+|.++..+++. +.+++++|+++ ++..|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 16 RWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 34444444333333333332222222 4445444411345789999999999999999876 56899999954 88777
Q ss_pred CC-------CCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 234 PD-------TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 234 ~~-------~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
++ ..++.+..+|+.+....||+|++..+++++++++...+++++.+.+++ |.++... +.... .
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~~~---~ 163 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKTAW---L 163 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCchH---H
Confidence 62 247899999985533569999999999999877778899999999876 4343322 11110 0
Q ss_pred HHHHHhhhhhhhh---hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 307 TEAKLLYDMLMMV---AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 307 ~~~~~~~~~~~~~---~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.... .+...... ...-..++.+++.++++++||+++.....
T Consensus 164 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 164 AFLK-MIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred HHHH-HHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 0111 11111100 01123568999999999999999988765
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=117.91 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=102.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
+..+|||||||+|.++..+++.+ +.+++++|++. |++.|++. ..++++|+.+ +++ .||+|+++.++|++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999887 57999999965 99988753 3567888854 444 39999999999999766
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh---hhhhcCC-------------cccCHHHHHH
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML---MMVAVRG-------------SERTEKEWEK 333 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------~~~t~~~~~~ 333 (359)
.+.|++++++|+| . +.+++...++......+.. .++... +.....+ ...+.+++.+
T Consensus 127 -~~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~--~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 127 -EKVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLS--FYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred -HHHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHH--HHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 5699999999998 3 3344544433221110000 000000 0000111 2457899999
Q ss_pred HHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 334 LFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 334 ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
+|+++| ..++.+.. .+...+..++
T Consensus 199 ~~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 199 IFEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHHHh-CceEEEEccccEEEEEEEe
Confidence 999984 66677666 4455555554
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=113.63 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=115.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-CCCCceEeeCCCCCCCC--CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-DTDNLKFIAGDMFQSIP--PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~~~p--~~D~i~ 257 (359)
.+++..++ .....+|+|+|||+|..+..|++++|+..++|+|-+. |++.|+ ...+++|..+|+.+-.| .+|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 67888888 7788999999999999999999999999999999954 999887 47899999999965444 599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH-----hhhhhhhh--hcCCcccCHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL-----LYDMLMMV--AVRGSERTEKE 330 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~g~~~t~~~ 330 (359)
++-+||.++|. .++|.++...|.| ||.+.+.= +++...++...... .+.-.+.. .......+...
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCC---CceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 99999999776 5699999999999 88777743 33332221111110 01111110 01234668999
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+-++|...+-+ ++++++
T Consensus 170 Yy~lLa~~~~r-vDiW~T 186 (257)
T COG4106 170 YYELLAPLACR-VDIWHT 186 (257)
T ss_pred HHHHhCcccce-eeeeee
Confidence 99999888754 445444
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=118.46 Aligned_cols=150 Identities=16% Similarity=0.115 Sum_probs=100.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccCCC---CCCceEeeCCCC--CCCC-CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMF--QSIP-PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~--~~~p-~~D~i~~~~v 261 (359)
.+..+|||||||+|.++..|++. .|+.+++++|++ .+++.|++ ..++++...+.. ...+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45689999999999998888753 456799999995 48887763 345666665542 2222 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC-----CcccCHHHHHHHHH
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR-----GSERTEKEWEKLFL 336 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~t~~~~~~ll~ 336 (359)
+||+++++..++|++++++++ |.+++.+...+.... ..+........-......+ ...++.+++.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAY-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHH-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999998888889999999986 466666655542110 0000000000000000111 13679999999999
Q ss_pred HcCCceeEEEEeC
Q 018205 337 DAGFSHFKITPVY 349 (359)
Q Consensus 337 ~aGf~~~~~~~~~ 349 (359)
+ ||++...++..
T Consensus 213 ~-Gf~~~~~~~~~ 224 (232)
T PRK06202 213 Q-GWRVERQWPFR 224 (232)
T ss_pred C-CCeEEecccee
Confidence 9 99988777664
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-14 Score=121.77 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=106.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CC----CceEeeCCCCCCCCCccEEEEcch
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TD----NLKFIAGDMFQSIPPADAFFFKAI 261 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~----~v~~~~~d~~~~~p~~D~i~~~~v 261 (359)
..+|||||||.|.++..|++. +.+|+|+|+++ +++.|++ .. ++++.+.|.....+.||.|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 378999999999999999998 68899999965 8888873 12 477777777444556999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-hhcC----CcccCHHHHHHHHH
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-VAVR----GSERTEKEWEKLFL 336 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----g~~~t~~~~~~ll~ 336 (359)
++|..|+ ..+++.+.+.|+| +|.++|.+....-... ...-.+.+.... +..| .+..++++...+++
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittinrt~lS~----~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~ 238 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTINRTILSF----AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILN 238 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehhhhHHHh----hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH
Confidence 9999666 6699999999999 9999998876543321 111111111111 1122 24678999999999
Q ss_pred HcCCceeEEEEe
Q 018205 337 DAGFSHFKITPV 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
.+|+.+..+.-.
T Consensus 239 ~~~~~v~~v~G~ 250 (282)
T KOG1270|consen 239 ANGAQVNDVVGE 250 (282)
T ss_pred hcCcchhhhhcc
Confidence 999988766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=114.70 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=103.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~ 253 (359)
..+++.++ ..++.+|||+|||+|..+..++++ +.+++++|+++ +++.++. .-++.+...|+.. +.+ .|
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 45666665 345689999999999999999986 67899999955 8876542 2246777778743 233 59
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|+++.++|++++++...++++++++|+| ||.+++++.......... . .....++.+++.+
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~--------~-------~~~~~~~~~el~~ 157 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH--------M-------PFSFTFKEDELRQ 157 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC--------C-------CcCccCCHHHHHH
Confidence 999999999999877888999999999999 898777765433221100 0 0012468899999
Q ss_pred HHHHcCCceeEEEE
Q 018205 334 LFLDAGFSHFKITP 347 (359)
Q Consensus 334 ll~~aGf~~~~~~~ 347 (359)
+|. +|+++....
T Consensus 158 ~f~--~~~~~~~~e 169 (195)
T TIGR00477 158 YYA--DWELLKYNE 169 (195)
T ss_pred HhC--CCeEEEeec
Confidence 885 588777763
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-14 Score=109.21 Aligned_cols=87 Identities=25% Similarity=0.474 Sum_probs=57.9
Q ss_pred EEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CC---CceEeeCCCCCCCC--CccEEEEcchhccCC
Q 018205 199 VDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TD---NLKFIAGDMFQSIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~---~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~ 266 (359)
||||||+|.++..+++.+|..+++++|++. +++.+++ .. ++++...+.....+ .||+|++++++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 799999999999999999999999999965 8877773 12 33444445433322 59999999999999
Q ss_pred chHHHHHHHHHHHhcccCCCCcEE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKV 290 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~l 290 (359)
++...++++++++|+| ||.+
T Consensus 80 -~~~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TS---S-EE
T ss_pred -hhHHHHHHHHHHHcCC---CCCC
Confidence 4456799999999999 8865
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-14 Score=104.41 Aligned_cols=88 Identities=25% Similarity=0.511 Sum_probs=72.6
Q ss_pred EEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHH
Q 018205 199 VDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~ 271 (359)
||+|||+|..+..++++ +..+++++|++. +++.++ ...++.+..+|+.+ ++| .||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999998 888999999955 777776 35667799999965 555 39999999999999 4456
Q ss_pred HHHHHHHHhcccCCCCcEEEE
Q 018205 272 KILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 272 ~~L~~~~~~L~p~~~gG~lli 292 (359)
+++++++++||| ||.++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 799999999999 888875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=117.57 Aligned_cols=144 Identities=15% Similarity=0.161 Sum_probs=103.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CC--CceEeeCCCCC-CC--CCccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TD--NLKFIAGDMFQ-SI--PPADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~--~v~~~~~d~~~-~~--p~~D~i~~~~vl~~ 264 (359)
...+|||||||-|.++..+++. +.+|+++|+++ +++.|+. .. .+++.+...++ .. ..||+|+|..|++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4689999999999999999998 68999999966 9988883 22 23455555533 12 35999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHh-hhhhhhhhcC----CcccCHHHHHHHHHHcC
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLL-YDMLMMVAVR----GSERTEKEWEKLFLDAG 339 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----g~~~t~~~~~~ll~~aG 339 (359)
.++++. +++.|.+.+|| ||.+++.+.+..... +...... -.+..+...+ .+....+|...++.++|
T Consensus 137 v~dp~~--~~~~c~~lvkP---~G~lf~STinrt~ka----~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 137 VPDPES--FLRACAKLVKP---GGILFLSTINRTLKA----YLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred cCCHHH--HHHHHHHHcCC---CcEEEEeccccCHHH----HHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 998865 99999999999 898888887754321 1100000 0000111111 24567899999999999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
+.+...+.+
T Consensus 208 ~~~~~~~g~ 216 (243)
T COG2227 208 LKIIDRKGL 216 (243)
T ss_pred ceEEeecce
Confidence 998887765
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=121.33 Aligned_cols=99 Identities=20% Similarity=0.355 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCCcch----HHHHHHHHCC-----CCeEEEeeccc-ccccCCCC--------------------------
Q 018205 193 QGLGSLVDVGGGTGS----FARIISEAFP-----GIKCTVLDLPH-VVPKVPDT-------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~~~-~~~~a~~~-------------------------- 236 (359)
.+..+|+|+|||+|. +++.+++.++ +.+++++|++. +++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5666777654 57899999965 89877741
Q ss_pred -------CCceEeeCCCCCC-CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 237 -------DNLKFIAGDMFQS-IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 237 -------~~v~~~~~d~~~~-~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+|+|..+|+.+. .+ .||+|+|.++|+++++++..+++++++++|+| ||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 3789999999763 32 49999999999999988888999999999999 89888844
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=109.80 Aligned_cols=162 Identities=15% Similarity=0.162 Sum_probs=122.0
Q ss_pred cCCCC-eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCc-eEeeCCCCCC---CC--------
Q 018205 192 FQGLG-SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNL-KFIAGDMFQS---IP-------- 251 (359)
Q Consensus 192 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v-~~~~~d~~~~---~p-------- 251 (359)
++... +|||||||||.++..+++.+|++...-.|... .....+ ..+++ ..+..|+.++ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34445 59999999999999999999999988888844 322111 12222 3344455332 11
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc-CCcccCHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV-RGSERTEKE 330 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~t~~~ 330 (359)
.||.|++.|++|-.+-+.+..+++.+.++|++ ||.+++..+...++.... +....||..+.... ....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 49999999999999999999999999999999 999999998877664321 23345666655443 466899999
Q ss_pred HHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.++..++||+..+...++.+..+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999988776666554
|
The function of this family is unknown. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=116.04 Aligned_cols=146 Identities=15% Similarity=0.185 Sum_probs=102.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i 256 (359)
..+++.++ ..+..+|||+|||+|.++..+++. +.+++++|++. +++.++. .....++.+|+.+ +++ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44555555 335689999999999999988765 57899999954 8887764 2346788999854 444 49999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
+++.++|+.++. ..+|++++++|+| ||.+++......... .....+.............+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~------el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLP------ELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchH------HHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999987665 5699999999999 888888765433211 11111111000011234578999999999
Q ss_pred HcCCce
Q 018205 337 DAGFSH 342 (359)
Q Consensus 337 ~aGf~~ 342 (359)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988864
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=115.60 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCCC--CccEEEEcchhccCCch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSIP--PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~~~ 268 (359)
++..+|||||||+|..+..+++..|+.+++++|+++ +++.|++ ..++.+..+|+.++++ .||+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 456789999999999999999988889999999965 9998875 4678899999876544 49999999999999877
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
+..+++++++++++ +.++|.+...++
T Consensus 122 ~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 78899999999974 688888876544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-13 Score=109.06 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=108.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCce-EeeCCCCC-C-CC--CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLK-FIAGDMFQ-S-IP--PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~-~~~~d~~~-~-~p--~~D~i~~~~ 260 (359)
+....||+||||+|.--... .--|..++|++|+.+ |.+.+. ...++. |+.++..+ + ++ ++|+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 44567899999999866543 223678999999954 766554 256676 88887743 2 33 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
+|+-..++ .+.|++++++|+| ||+++++|..........- -.+...+........|..++.+.| +.|++|-|
T Consensus 154 vLCSve~~--~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhchhhheeccceEEehhHH-HHhhhccc
Confidence 99877554 7799999999999 9999999998876653210 011122222233357888899988 56689999
Q ss_pred ceeEEEEeCCceeE
Q 018205 341 SHFKITPVYGIKSL 354 (359)
Q Consensus 341 ~~~~~~~~~~~~~v 354 (359)
+..+..+.....++
T Consensus 226 ~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 226 SIDSCKRFNFGTTW 239 (252)
T ss_pred ccchhhcccCCceE
Confidence 99888777554443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=114.27 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=102.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+.+|||+|||+|.++..+++.+|..+++++|++. +++.++. .+++.++.+|+.+ +++ .||+|++++++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 35799999999999999999999999999999954 7766552 3478999999855 333 4999999999999866
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
. .++|++++++|+| ||.+++.+....... ....... .......+.++|.+++.++ |+...+..
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 5 5699999999999 898888764332211 1111111 0223456889999999998 88766543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=114.06 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=100.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~D~i~~~~vl~~ 264 (359)
.+..+|||||||+|.++..+++.. .+++++|++. +++.|++ .+++.+..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999874 5699999955 8877762 25789999996323345999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-h-hhcCCcccCHHHHHHHHHHcCCce
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-M-VAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+++++...+++++.+.+++ |.++... +.... ............ . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9988888999999987653 4444322 11110 000101100000 0 001224568899999999999999
Q ss_pred eEEEEeC
Q 018205 343 FKITPVY 349 (359)
Q Consensus 343 ~~~~~~~ 349 (359)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9988764
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=121.78 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=111.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCCCCCCccEEEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQSIPPADAFFF 258 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~~~p~~D~i~~ 258 (359)
.+++.+. ..+..+|||||||+|.++..+++.+ +++++++|+++ +++.|++ ...+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 4455555 5677899999999999999998876 67999999955 8877663 23578888887433235999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
..++++.++.....++++++++|+| ||.+++.+...+...... ..+.+-. ...+|...+.+++.+.++ .
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~y--ifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINKY--IFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCceee--ecCCCcCCCHHHHHHHHH-C
Confidence 9999999877777899999999999 899988776544321110 0111111 123566778888888766 5
Q ss_pred CCceeEEEEeC
Q 018205 339 GFSHFKITPVY 349 (359)
Q Consensus 339 Gf~~~~~~~~~ 349 (359)
||.+.++...+
T Consensus 304 ~~~v~d~~~~~ 314 (383)
T PRK11705 304 LFVMEDWHNFG 314 (383)
T ss_pred CcEEEEEecCh
Confidence 89888876654
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-12 Score=116.63 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=102.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D 254 (359)
.++..++ ..++.+|||+|||+|..+..+++. +.+++++|++. +++.+++ .-++++...|+.. ..+ .||
T Consensus 111 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 4444444 234569999999999999999886 67999999965 7776542 3368888888854 233 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
+|+++.++|++++++...+++++.++|+| ||.++++.....+....+ . .....++..++.++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~-------p~~~~~~~~el~~~ 248 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------M-------PFSFTFKEGELKDY 248 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------C-------CCCcccCHHHHHHH
Confidence 99999999999888888999999999999 898777654433221100 0 00134678999999
Q ss_pred HHHcCCceeEEE
Q 018205 335 FLDAGFSHFKIT 346 (359)
Q Consensus 335 l~~aGf~~~~~~ 346 (359)
+. +|++++..
T Consensus 249 ~~--~~~i~~~~ 258 (287)
T PRK12335 249 YQ--DWEIVKYN 258 (287)
T ss_pred hC--CCEEEEEe
Confidence 85 48888775
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=116.65 Aligned_cols=132 Identities=19% Similarity=0.350 Sum_probs=91.0
Q ss_pred CCChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-cc
Q 018205 153 GTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VV 230 (359)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~ 230 (359)
|..+|+.+...|++.-.-.+ +.-.....+.+.+.+ ++..+|||+|||+|..+..|+++.+ ..+++++|++. |+
T Consensus 27 G~~lf~~i~~~peYy~tr~E-~~il~~~~~~ia~~~----~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL 101 (301)
T TIGR03438 27 GSELFEQICELPEYYPTRTE-AAILERHADEIAAAT----GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL 101 (301)
T ss_pred HHHHHHHHHCCCccccHHHH-HHHHHHHHHHHHHhh----CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH
Confidence 56677777666654321110 100000013344433 3457899999999999999999987 58999999976 87
Q ss_pred ccCCC-----C--CCceEeeCCCCCC--CC-Cc-----cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 231 PKVPD-----T--DNLKFIAGDMFQS--IP-PA-----DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 231 ~~a~~-----~--~~v~~~~~d~~~~--~p-~~-----D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.+.+ . .++.++++|+.+. .+ .+ .++++...++++++++...+|++++++|+| ||.+++
T Consensus 102 ~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 102 KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 76652 2 3466789999652 22 23 345566789999999999999999999999 888776
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=108.66 Aligned_cols=127 Identities=19% Similarity=0.333 Sum_probs=95.2
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC-CccE
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP-PADA 255 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p-~~D~ 255 (359)
++..+. ..+..+|||||||+|.++..+++++|+.+++++|++ .+++.+++ ..+++++.+|.....+ .||+
T Consensus 23 ~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~ 100 (187)
T PRK08287 23 ALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA 100 (187)
T ss_pred HHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence 344554 456789999999999999999999999999999995 47777652 2478999998854444 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
|++....+++ ..+++++++.|+| ||.+++...... +.+++.+++
T Consensus 101 v~~~~~~~~~-----~~~l~~~~~~Lk~---gG~lv~~~~~~~----------------------------~~~~~~~~l 144 (187)
T PRK08287 101 IFIGGSGGNL-----TAIIDWSLAHLHP---GGRLVLTFILLE----------------------------NLHSALAHL 144 (187)
T ss_pred EEECCCccCH-----HHHHHHHHHhcCC---CeEEEEEEecHh----------------------------hHHHHHHHH
Confidence 9997765433 4589999999999 888877432110 235667889
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
++.||+.+++...
T Consensus 145 ~~~g~~~~~~~~~ 157 (187)
T PRK08287 145 EKCGVSELDCVQL 157 (187)
T ss_pred HHCCCCcceEEEE
Confidence 9999987666544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=9e-13 Score=119.92 Aligned_cols=144 Identities=17% Similarity=0.141 Sum_probs=95.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCCCCccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSIPPADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~p~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++. +.+++++|++. |++.|++ ..++++...|+.+....||+|+|..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 67899999965 8877652 13578888888432235999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh--hhcCCcccCHHHHHHHHHHcC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM--VAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~t~~~~~~ll~~aG 339 (359)
++|++++....+++.+.+. .+ |.++|.. .+.... +......-..... .......++.+++.++|+++|
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~----g~liIs~--~p~~~~---~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AE----KRLIISF--APKTLY---YDILKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cC----CEEEEEe--CCcchH---HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 9999887777788888754 44 4555522 111110 0000000000000 000112448999999999999
Q ss_pred CceeEEEEeC
Q 018205 340 FSHFKITPVY 349 (359)
Q Consensus 340 f~~~~~~~~~ 349 (359)
|++.......
T Consensus 292 f~v~~~~~~~ 301 (315)
T PLN02585 292 WKVARREMTA 301 (315)
T ss_pred CEEEEEEEee
Confidence 9987766553
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=111.90 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=103.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC--CCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ--SIP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~--~~p 251 (359)
+.+...++ --.+++|||||||+|.++..++.+.+. .|+|+|... ...... ...++.....-+.+ ...
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 45566664 224689999999999999999988544 799999844 222211 12333444333322 123
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|+|..||+|..++ ...|+++++.|+| ||.+++-..+.+...... +.+... ...|. .-....|...+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~r--Ya~m~--nv~FiPs~~~L 251 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDR--YAKMR--NVWFIPSVAAL 251 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCc--ccCCC--ceEEeCCHHHH
Confidence 49999999999999887 5699999999999 888888777766544321 000000 00110 11235699999
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
..|++++||+.+++...
T Consensus 252 ~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 252 KNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHcCCceEEEecC
Confidence 99999999999998766
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-13 Score=101.23 Aligned_cols=88 Identities=19% Similarity=0.371 Sum_probs=71.2
Q ss_pred EEEeCCCcchHHHHHHHHC---CCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-C--CCCccEEEEc-chhcc
Q 018205 198 LVDVGGGTGSFARIISEAF---PGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-S--IPPADAFFFK-AIFHA 264 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~--~p~~D~i~~~-~vl~~ 264 (359)
|||+|||+|..+..+++.+ |..+++++|+++ +++.+++ ..+++++++|+.+ + .+.||+|+++ .++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 557999999955 8887762 3589999999955 2 2359999995 55999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCc
Q 018205 265 FVDEDCLKILKRCREAIASRGDRG 288 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG 288 (359)
+++++..++++++.++|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 66
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=124.41 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=108.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC---CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ---SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~---~~p-- 251 (359)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|++. +++.+. ..+++.++++|+.+ ++|
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34555555 3456799999999999999999874 4799999954 777654 24578999999853 334
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..++|++++++..+++++++++|+| ||.+++.|.......... .. ......++...|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHHH
Confidence 49999999999999988888999999999999 999999887654432110 00 011234578899
Q ss_pred HHHHHHcCCceeEE
Q 018205 332 EKLFLDAGFSHFKI 345 (359)
Q Consensus 332 ~~ll~~aGf~~~~~ 345 (359)
.++|.++||.....
T Consensus 167 ~~~f~~~~~~~~~~ 180 (475)
T PLN02336 167 TKVFKECHTRDEDG 180 (475)
T ss_pred HHHHHHheeccCCC
Confidence 99999999986543
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=113.52 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCCCeEEEeCCCcchHH--HHHHHHCCCCeEEEeecc-cccccCCC--------CCCceEeeCCCCCCC---CCccEEEE
Q 018205 193 QGLGSLVDVGGGTGSFA--RIISEAFPGIKCTVLDLP-HVVPKVPD--------TDNLKFIAGDMFQSI---PPADAFFF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~~-~~~~~a~~--------~~~v~~~~~d~~~~~---p~~D~i~~ 258 (359)
.++++|+|||||.|.++ ..++..+|+.+++++|.+ ++++.|++ .++++|..+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 36799999999988443 334456899999999994 47776662 468999999996532 35999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
. ++|+|..++..++|+++++.|+| ||.+++-.. .+ ....++ .....++.+
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~~---~G-------~r~~LY----------p~v~~~~~~------ 251 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRSA---HG-------ARAFLY----------PVVDPCDLR------ 251 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEecc---cc-------hHhhcC----------CCCChhhCC------
Confidence 9 99999766778899999999999 887777441 11 111111 112233332
Q ss_pred CCceeEEEEeCC--ceeEEEEeC
Q 018205 339 GFSHFKITPVYG--IKSLIEVYP 359 (359)
Q Consensus 339 Gf~~~~~~~~~~--~~~vi~~~~ 359 (359)
||.+..+.+-.+ ..+||.+++
T Consensus 252 gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 252 GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred CeEEEEEECCCCCceeeEEEEEe
Confidence 999888876633 578888874
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=103.98 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=102.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCCCC-CCccEEEEcchhccCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSI-PPADAFFFKAIFHAFV 266 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~-p~~D~i~~~~vl~~~~ 266 (359)
+..+|||+|||+|.++..+++..+ +++++|++ .+++.++. ..+++++.+|..+.. +.||+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 357899999999999999999865 89999994 48776662 246788999986533 3599999998877664
Q ss_pred ch-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC
Q 018205 267 DE-------------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT 327 (359)
Q Consensus 267 ~~-------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++ ....+++++.++|+| ||.+++...... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~----------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN----------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------C
Confidence 32 135689999999999 999988763221 2
Q ss_pred HHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
..++.+++++.||....+...+.+.-.++++
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 4567888999999999998887776666655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=105.70 Aligned_cols=140 Identities=16% Similarity=0.226 Sum_probs=95.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCC-CCC-Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~-~~p-~~D 254 (359)
.+++.++ ..++.++||+|||.|..+..|+++ +..|+++|.+. .++.+. +.-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 5566666 445789999999999999999999 88999999965 665543 34458889999855 444 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
+|++..++++++.+...++++++.+.++| ||.+++.........+.+ .. ....+...|+...
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~~--------~~-------~~f~~~~~EL~~~ 158 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPCP--------SP-------FPFLLKPGELREY 158 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS--S--------S---------S--B-TTHHHHH
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCCC--------CC-------CCcccCHHHHHHH
Confidence 99999999999999999999999999999 787777554332211100 00 1123466778887
Q ss_pred HHHcCCceeEEE
Q 018205 335 FLDAGFSHFKIT 346 (359)
Q Consensus 335 l~~aGf~~~~~~ 346 (359)
+ +||.+++..
T Consensus 159 y--~dW~il~y~ 168 (192)
T PF03848_consen 159 Y--ADWEILKYN 168 (192)
T ss_dssp T--TTSEEEEEE
T ss_pred h--CCCeEEEEE
Confidence 7 478877654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=106.53 Aligned_cols=133 Identities=9% Similarity=0.106 Sum_probs=92.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccc----cCCCCCCceEeeCCCCCC-----CC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVP----KVPDTDNLKFIAGDMFQS-----IP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~----~a~~~~~v~~~~~d~~~~-----~p-~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..+++..+..+++++|+++ |++ .++...++.++.+|...+ ++ .+|+|++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d- 148 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD- 148 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC-
Confidence 5677899999999999999999988766899999954 665 444456899999998542 12 48999843
Q ss_pred hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 261 IFHAFVDE-DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 261 vl~~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+++ ....+|++++++|+| ||.++|.-...+-..... . . +..++..++++++|
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~---~---------------~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD---P---------------K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC---H---------------H-HHHHHHHHHHHHcC
Confidence 3322 234578999999999 999998522211000000 0 0 11244569999999
Q ss_pred CceeEEEEeCCc
Q 018205 340 FSHFKITPVYGI 351 (359)
Q Consensus 340 f~~~~~~~~~~~ 351 (359)
|+.++.......
T Consensus 203 F~~i~~~~l~p~ 214 (226)
T PRK04266 203 FEILEVVDLEPY 214 (226)
T ss_pred CeEEEEEcCCCC
Confidence 999999887543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-12 Score=109.20 Aligned_cols=140 Identities=18% Similarity=0.316 Sum_probs=99.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----CCCCc-eEeeCCCCC--CCC-CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----DTDNL-KFIAGDMFQ--SIP-PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v-~~~~~d~~~--~~p-~~D~i~~~~vl~ 263 (359)
+..+.||.|+|.|..+..++-.. --+|-.+|+ +..++.|+ ...++ ++.+..+.+ |.+ .||+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 56899999999999998876544 236888888 45777776 22343 555555533 333 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
|++|++..++|++|+++|+| +|.|+|-|.+...... .+|-. .++-.|+.+.|.++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~~----DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDEE----DSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEETT----TTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCCc----cCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 8888888877665421 12221 34567899999999999999999
Q ss_pred EEEEeCC
Q 018205 344 KITPVYG 350 (359)
Q Consensus 344 ~~~~~~~ 350 (359)
+...-.+
T Consensus 198 ~~~~Q~~ 204 (218)
T PF05891_consen 198 KEEKQKG 204 (218)
T ss_dssp EEEE-TT
T ss_pred EeccccC
Confidence 8776644
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=107.30 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=96.0
Q ss_pred hcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCCCC--CccEEEEc
Q 018205 187 DCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQSIP--PADAFFFK 259 (359)
Q Consensus 187 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~~p--~~D~i~~~ 259 (359)
.++ -....+++|+|||.|.++..|+.+. -+++++|++. .++.|+ ..++|++.+.|+.+..| .||+|+++
T Consensus 38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP--RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT--TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC--ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 455 4456899999999999999999985 4799999955 888776 46899999999966555 49999999
Q ss_pred chhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 260 AIFHAFVD-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 260 ~vl~~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
.++|++.+ ++...+++++.++|+| ||.+++.+.... ....+ |.....+.+.++|++.
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd~------------~c~~w-------gh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAP---GGHLVFGHARDA------------NCRRW-------GHAAGAETVLEMLQEH 171 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-HH------------HHHHT-------T-S--HHHHHHHHHHH
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCC------------ccccc-------CcccchHHHHHHHHHH
Confidence 99999986 6788899999999999 898888764211 00111 2344678888888887
Q ss_pred CCceeEEEEe
Q 018205 339 GFSHFKITPV 348 (359)
Q Consensus 339 Gf~~~~~~~~ 348 (359)
|..++....
T Consensus 172 -~~~~~~~~~ 180 (201)
T PF05401_consen 172 -LTEVERVEC 180 (201)
T ss_dssp -SEEEEEEEE
T ss_pred -hhheeEEEE
Confidence 666666665
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=103.97 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCC----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQS---- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~---- 249 (359)
.+..+|||+|||.|..+..|+++ +.+|+++|+++ +++.+. ...+|+++++|+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35679999999999999999987 78999999965 666531 135789999999762
Q ss_pred CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHH
Q 018205 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEK 329 (359)
Q Consensus 250 ~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 329 (359)
.+.||.|+-+.++|+++.+.....++.+.++|+| ||.+++........... .--...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~-----------------gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMA-----------------GPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCC-----------------CcCCCCCHH
Confidence 2359999999999999988888999999999999 88877776654322100 001235888
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018205 330 EWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~ 347 (359)
++.++|.. +|.+..+..
T Consensus 171 eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 171 EVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHhcC-CceEEEEee
Confidence 99988863 455554443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=102.30 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=71.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC--CCCccEEEEcchhccC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS--IPPADAFFFKAIFHAF 265 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~--~p~~D~i~~~~vl~~~ 265 (359)
..+|||||||+|..+..++...|+.+++++|.+. +++.++ ..++++++.+|+.+- ...||+|++.. ++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 6899999999999999999888999999999954 666554 134699999999552 23599999866 4433
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+++.++++|+| ||.+++.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEE
Confidence 3588899999999 8988875
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=105.40 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=93.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~~ 266 (359)
++..+|||||||+|.++..+++.. +.+++++|+++ +++.++. .+++++.+|+.+ +++ .||+|++++++|+++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 356799999999999999887754 66889999954 7776653 457888888854 233 499999999999997
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhh----------hhhhhhcCCcccCHHHHHHHHH
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYD----------MLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
+. ..+|+++.+.+++ +++.-+...... ........ ...........++.+++.++++
T Consensus 90 d~--~~~l~e~~r~~~~------~ii~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH------AIVSFPNFGYWR-----VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCG 156 (194)
T ss_pred CH--HHHHHHHHHhCCe------EEEEcCChhHHH-----HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHH
Confidence 65 4588888877554 333211111000 00000000 0000001224679999999999
Q ss_pred HcCCceeEEEEe
Q 018205 337 DAGFSHFKITPV 348 (359)
Q Consensus 337 ~aGf~~~~~~~~ 348 (359)
++||++++....
T Consensus 157 ~~Gf~v~~~~~~ 168 (194)
T TIGR02081 157 ELNLRILDRAAF 168 (194)
T ss_pred HCCCEEEEEEEe
Confidence 999999887766
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-11 Score=99.16 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=88.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|..+..++++.|+.+++++|.++ +++.|++ .++++++.+|+.+ ... .||+|+++.+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 47899999999999999999999999999999954 8876652 3459999999854 222 5999998752
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
. ....+++++++.|+| ||.+++..... ...++.++.+..|+.+.+
T Consensus 122 -~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 -A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred -c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEee
Confidence 2 235699999999999 89988864211 123355666667999877
Q ss_pred EEEe
Q 018205 345 ITPV 348 (359)
Q Consensus 345 ~~~~ 348 (359)
++..
T Consensus 167 ~~~~ 170 (187)
T PRK00107 167 VIEL 170 (187)
T ss_pred eEEE
Confidence 7655
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=113.46 Aligned_cols=108 Identities=18% Similarity=0.333 Sum_probs=86.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------CCCceEeeCCCCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------TDNLKFIAGDMFQSIP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~~~p 251 (359)
+-+++.++ .....+|||+|||+|.++..+++++|+.+++++|.+. +++.|+. ..++++...|.++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 45566666 2334699999999999999999999999999999975 8877762 1368999999876543
Q ss_pred --CccEEEEcchhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 --PADAFFFKAIFHA---FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 --~~D~i~~~~vl~~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+|+--+|. .+++...++++.++++|+| ||.++++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 5999999755543 4556667899999999999 89999874
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-11 Score=103.16 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---C-CCccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---I-PPADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~-p~~D~i~~~~vl 262 (359)
.+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..++++...|+.+. . ..||+|++++++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35689999999999999988875 56899999954 7666542 33567777777331 1 249999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh-hcCCcccCHHHHHHHHHHcCCc
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV-AVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
++.++. ..+|+.+.++|+| ||.+++........................-.. .......+.++|.++++++||+
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 998765 4599999999999 898887654321110000000000000000000 0112356899999999999999
Q ss_pred eeEEEEe
Q 018205 342 HFKITPV 348 (359)
Q Consensus 342 ~~~~~~~ 348 (359)
+++....
T Consensus 200 ~v~~~~~ 206 (233)
T PRK05134 200 VQDITGL 206 (233)
T ss_pred EeeeeeE
Confidence 9887643
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=100.58 Aligned_cols=132 Identities=13% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCC----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQS---- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~---- 249 (359)
.+..+|||+|||.|..+..|+++ +.+|+++|+++ .++.+. ...+|++.++|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999986 88999999965 666431 146789999999763
Q ss_pred CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHH
Q 018205 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEK 329 (359)
Q Consensus 250 ~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~ 329 (359)
.+.||.|+-+.++|+++.+...+.++.+.++|+| ||.++++.......... ..-...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~-----------------gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELA-----------------GPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCC-----------------CCCCCCCHH
Confidence 2358999999999999999889999999999999 88766655554322110 001235889
Q ss_pred HHHHHHHHcCCceeEEEE
Q 018205 330 EWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~ 347 (359)
++.++|.. +|.+..+..
T Consensus 174 el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 174 EVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHhcC-CceEEEeee
Confidence 99999853 266655544
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=99.16 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=99.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~~ 266 (359)
++..+|||+|||.|.++..|.+. .++++.|+|+.. .+..+. ...+.++++|+.+ .+| .||.|+++.+|.+..
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999988885 589999999954 333322 4678999999944 355 399999999999997
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh----------hhhcCCcccCHHHHHHHHH
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM----------MVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~g~~~t~~~~~~ll~ 336 (359)
+++ ++|+++.++ |...+|.=+++..... ....++.-.| .-..|-+..|.++++++.+
T Consensus 90 ~P~--~vL~EmlRV------gr~~IVsFPNFg~W~~-----R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 90 RPD--EVLEEMLRV------GRRAIVSFPNFGHWRN-----RLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HHH--HHHHHHHHh------cCeEEEEecChHHHHH-----HHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 764 488888777 4455554333221110 1111100001 0112345779999999999
Q ss_pred HcCCceeEEEEeCC
Q 018205 337 DAGFSHFKITPVYG 350 (359)
Q Consensus 337 ~aGf~~~~~~~~~~ 350 (359)
+.|+++.+...+.+
T Consensus 157 ~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 157 ELGIRIEERVFLDG 170 (193)
T ss_pred HCCCEEEEEEEEcC
Confidence 99999999888744
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.1e-11 Score=102.99 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=98.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CC-CceEeeCCCCC-C--C-CCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TD-NLKFIAGDMFQ-S--I-PPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~-~v~~~~~d~~~-~--~-p~~D~i~~~~vl 262 (359)
+..+|||+|||+|.++..+++.. .+++++|++. +++.++. .. ++++...|+.+ . . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888764 4699999954 7666552 22 58888888743 1 1 249999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh---cCCcccCHHHHHHHHHHcC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA---VRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~t~~~~~~ll~~aG 339 (359)
|+..+. ..+|++++++|+| ||.+++........... .......+-...... ......+.++|.++++++|
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKP---GGILFFSTINRTPKSYL--LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCC---CcEEEEEecCCCchHHH--HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 999766 4599999999999 89888765432211100 000000000000000 0123458899999999999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|+++++...
T Consensus 196 ~~i~~~~~~ 204 (224)
T TIGR01983 196 LRVKDVKGL 204 (224)
T ss_pred CeeeeeeeE
Confidence 999888754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-11 Score=92.31 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=77.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CC-C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SI-P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~-p 251 (359)
.++..+. .....+|||+|||+|.++..+++++|+.+++++|+++ +++.++ ...+++++.+|... .. +
T Consensus 10 ~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 10 LTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 3445554 4456799999999999999999999989999999955 777665 23578898888743 11 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++....+ ...++++++++.|+| ||.+++.
T Consensus 88 ~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 599999976543 235799999999999 8887764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-11 Score=104.21 Aligned_cols=146 Identities=18% Similarity=0.253 Sum_probs=108.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCC--CeEEEeecc-cccccCCC-----CCCceEeeCCCCCC-----CC--CccEEEEcc
Q 018205 196 GSLVDVGGGTGSFARIISEAFPG--IKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQS-----IP--PADAFFFKA 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~-----~p--~~D~i~~~~ 260 (359)
.+||+||||.|.+..-+++-.|+ +++.+.|.+ ..++..++ ..++...+.|+..+ .+ .+|+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999999999999888 899999995 47776553 34566666666332 11 399999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc---ccCHHHHHHHHHH
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS---ERTEKEWEKLFLD 337 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~t~~~~~~ll~~ 337 (359)
+|..++.+.....+++++++||| ||.|++-|+...+-.... +. ....++.+..+..+|. .++.+++.++|.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 99999999999999999999999 999999887765432110 00 0112233333334443 5799999999999
Q ss_pred cCCceeEEE
Q 018205 338 AGFSHFKIT 346 (359)
Q Consensus 338 aGf~~~~~~ 346 (359)
+||..++..
T Consensus 228 agf~~~~~~ 236 (264)
T KOG2361|consen 228 AGFEEVQLE 236 (264)
T ss_pred cccchhccc
Confidence 999976643
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=107.84 Aligned_cols=109 Identities=18% Similarity=0.311 Sum_probs=84.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC-CccE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP-PADA 255 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p-~~D~ 255 (359)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|++. +++.++. .-..+++..|.+...+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 4455555 2334689999999999999999999999999999965 8877762 2245678888866444 4999
Q ss_pred EEEcchhccCC---chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 256 FFFKAIFHAFV---DEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 256 i~~~~vl~~~~---~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|+++-.+|... .....++++++.+.|+| ||.++|+...
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan~ 305 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVANA 305 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEeC
Confidence 99999888642 34557899999999999 9999887643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.3e-10 Score=98.61 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=92.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCC------CCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQS------IPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~------~p~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. +.-.|+++|+++ +++.++...+|.++..|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999986 345899999953 556665567899999998543 2359999887
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.. .+ ++...++.++++.|+| ||.++|......-.... +.. ..++ ++. ++|+++|
T Consensus 210 va---~p-dq~~il~~na~r~LKp---GG~~vI~ika~~id~g~----------~pe-------~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA---QP-DQARIVALNAQYFLKN---GGHFIISIKANCIDSTA----------KPE-------VVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC---Cc-chHHHHHHHHHHhccC---CCEEEEEEeccccccCC----------CHH-------HHHH-HHH-HHHHHcC
Confidence 64 12 2334577789999999 89998832111111000 000 0112 444 7889999
Q ss_pred CceeEEEEeCC
Q 018205 340 FSHFKITPVYG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+.++...+..
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99998888743
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-11 Score=98.41 Aligned_cols=98 Identities=20% Similarity=0.395 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
...+|||+|||+|.++..++++.|+.+++++|++. +++.++. ...++++..|.++..+ .||+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 57899999999999999999999999999999954 7777652 2238999999988665 4999999877665
Q ss_pred CCc---hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 265 FVD---EDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 265 ~~~---~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.+ +-..++++++.++|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 543 3457899999999999 89987744
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.7e-10 Score=98.07 Aligned_cols=155 Identities=19% Similarity=0.284 Sum_probs=114.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCC------CCCCc-eEeeCCCCCC------CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVP------DTDNL-KFIAGDMFQS------IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~------~~~~v-~~~~~d~~~~------~p~~D~i 256 (359)
..+.+||||.||+|.+....+..+|. .++...|.++ -++..+ ....+ +|.++|.|+. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999997 6899999955 666554 23444 9999999873 3568999
Q ss_pred EEcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC-----cccCHHH
Q 018205 257 FFKAIFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG-----SERTEKE 330 (359)
Q Consensus 257 ~~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~t~~~ 330 (359)
+.+.++..++|.+ +...|+.+.+++.| ||.++.....++.+.. +....+..+-+| +.||..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle---------~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE---------MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH---------HHHHHHhcccCCCceEEEecCHHH
Confidence 9999999999876 55579999999999 8877775544443321 111111112222 3589999
Q ss_pred HHHHHHHcCCceeEEEE-eCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITP-VYGIKSLIEVYP 359 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 359 (359)
+.+|+++|||.-++..- -.+.++|..|++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999999655543 367788887764
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-10 Score=100.01 Aligned_cols=124 Identities=20% Similarity=0.342 Sum_probs=92.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchh--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIF-- 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl-- 262 (359)
...+|||+|||+|.++..+++.+|+.+++++|++. +++.++. .++++++.+|+++.++ .||+|+++--.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 45699999999999999999999999999999954 7776652 3469999999976553 49999985322
Q ss_pred ----ccCCch------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 263 ----HAFVDE------------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 263 ----~~~~~~------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
+.+..+ ....+++++.++|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 222111 123689999999999 888776210
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
....+++.++|+++||..+++....
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124568888999999988877653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-10 Score=100.29 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=89.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---C----CCceEeeCCCCCCCCCccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---T----DNLKFIAGDMFQSIPPADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~----~~v~~~~~d~~~~~p~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++..+ .+++++|+++ +++.|++ . .++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 4578999999999999988776543 3699999955 8877763 1 2233322221 59999986432
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+....+++++.++|+| ||.+++...... ..+++.+.+++.||++.+
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 3345789999999999 898888542211 245678899999999999
Q ss_pred EEEeCCceeEEEEe
Q 018205 345 ITPVYGIKSLIEVY 358 (359)
Q Consensus 345 ~~~~~~~~~vi~~~ 358 (359)
+.....+.+++.-+
T Consensus 236 ~~~~~~W~~~~~~~ 249 (250)
T PRK00517 236 VLERGEWVALVGKK 249 (250)
T ss_pred EEEeCCEEEEEEEe
Confidence 99888888776544
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=94.73 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=78.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC---------CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p- 251 (359)
.+.+.+. .+.+..+|||+|||+|.++..+++.. +..+++++|++++.. ..+++++++|+.+. .+
T Consensus 41 ~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~----~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP----IVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC----CCCcEEEecCCCChHHHHHHHHHhCC
Confidence 4445554 24567899999999999999999986 456999999976432 24689999999652 22
Q ss_pred -CccEEEEcchhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHAFVDED---------CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|++....+...++. ...+|+.++++|+| ||.+++..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 499999977665544321 24689999999999 89888864
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=100.14 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCC-CC-C--CC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDM-FQ-S--IP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~-~~-~--~p--~~D~i~~~~ 260 (359)
...+|||+|||+|.++..+++.+|+.+++++|++. +++.|++ ..+++++.+|+ .. + ++ .||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56899999999999999999999999999999954 8876652 36799999998 32 2 33 399999865
Q ss_pred hhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFHAFV------DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 442211 11135699999999999 89998865
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=96.67 Aligned_cols=134 Identities=17% Similarity=0.330 Sum_probs=96.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchh-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIF- 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl- 262 (359)
.+..+|||+|||+|..+..++...|..+++++|++. +++.+++ ..+++++.+|++++.+ .||+|+++--.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 456799999999999999999999999999999954 7776652 3579999999977554 59999985211
Q ss_pred -----ccCC------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh
Q 018205 263 -----HAFV------------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV 319 (359)
Q Consensus 263 -----~~~~------------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
+... -+...++++++.++|+| ||.+++ +...
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~g~---------------------- 240 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EIGY---------------------- 240 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EECc----------------------
Confidence 1111 12235788999999999 887776 2100
Q ss_pred hcCCcccCHHHHHHHHHHcCCceeEEE-EeCCceeEEEEe
Q 018205 320 AVRGSERTEKEWEKLFLDAGFSHFKIT-PVYGIKSLIEVY 358 (359)
Q Consensus 320 ~~~g~~~t~~~~~~ll~~aGf~~~~~~-~~~~~~~vi~~~ 358 (359)
...+++.+++.+.||..+++. ...+...++.++
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 013458888999999876664 335566666554
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-09 Score=90.76 Aligned_cols=123 Identities=18% Similarity=0.299 Sum_probs=89.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCC-ceEeeCCCCCCCC--CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDN-LKFIAGDMFQSIP--PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~-v~~~~~d~~~~~p--~~D~i~~~~v 261 (359)
.+..+|||+|||+|.++..+++. +.+++++|+++ +++.+++ .++ +.++.+|+.+.++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 67899999954 7776641 122 8899999876544 4999998654
Q ss_pred hccCC-------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC
Q 018205 262 FHAFV-------------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR 322 (359)
Q Consensus 262 l~~~~-------------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
+...+ ......+++++.++|+| ||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12245689999999999 88887753211
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...+++.++++++||++..+...
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeec
Confidence 12356778999999998776544
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-09 Score=93.58 Aligned_cols=109 Identities=18% Similarity=0.308 Sum_probs=86.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---C---CCceEeeCCCCCCCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---T---DNLKFIAGDMFQSIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~---~~v~~~~~d~~~~~p-~~ 253 (359)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|.+. .++.++. . .+..+...|.+++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 56677787 4444599999999999999999999999999999976 8887773 1 222577788877655 59
Q ss_pred cEEEEcchhccCC---chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 254 DAFFFKAIFHAFV---DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 254 D~i~~~~vl~~~~---~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|.|+|+==+|.-. +.-..+++....+.|++ ||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 9999998887532 22335899999999999 999999775
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=88.17 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=82.2
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC------CCCCceEeeCCCCC---CCCCc
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQ---SIPPA 253 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~---~~p~~ 253 (359)
.+.++. ..+..+++|||||+|..+..++...|..+++++|. +++++..+ ..++++++.+|..+ ..|.+
T Consensus 26 ~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 356666 67789999999999999999999999999999998 44665444 36899999999855 34569
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|.|++... -. ...+|+.+...|+| ||+|++.-..
T Consensus 104 daiFIGGg-~~-----i~~ile~~~~~l~~---ggrlV~nait 137 (187)
T COG2242 104 DAIFIGGG-GN-----IEEILEAAWERLKP---GGRLVANAIT 137 (187)
T ss_pred CEEEECCC-CC-----HHHHHHHHHHHcCc---CCeEEEEeec
Confidence 99999876 22 25699999999999 8998885433
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-10 Score=92.30 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=86.3
Q ss_pred EEeeccc-ccccCCC---------CCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCc
Q 018205 222 TVLDLPH-VVPKVPD---------TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRG 288 (359)
Q Consensus 222 ~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG 288 (359)
+|+|+++ |++.|++ ..+++++.+|+.+ +++ .||+|++..++|++++. .++|++++++|+| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 4889965 8887741 2469999999955 444 39999999999999765 5699999999999 99
Q ss_pred EEEEEeeecCCCCcchHHHHHHHhhhhhhh-----hh----------cCCcccCHHHHHHHHHHcCCceeEEEEeC-Cce
Q 018205 289 KVIIIDIVINEKKEDAQLTEAKLLYDMLMM-----VA----------VRGSERTEKEWEKLFLDAGFSHFKITPVY-GIK 352 (359)
Q Consensus 289 ~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------~~g~~~t~~~~~~ll~~aGf~~~~~~~~~-~~~ 352 (359)
.++|.|...++..... .... ........ .. .-....+.+++.++|+++||+.+..+... +..
T Consensus 76 ~l~i~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTT-FMQG-WMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHH-HHHH-HHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 9999998765432110 0000 00000000 00 00124689999999999999988887774 333
Q ss_pred eEEE
Q 018205 353 SLIE 356 (359)
Q Consensus 353 ~vi~ 356 (359)
.+..
T Consensus 154 ~~~~ 157 (160)
T PLN02232 154 GNLV 157 (160)
T ss_pred HeeE
Confidence 4443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=93.78 Aligned_cols=133 Identities=12% Similarity=0.237 Sum_probs=99.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~- 250 (359)
-++..+.. .+...+|||+|||+|..+..++++.++++++++|+.+ +.+.|++ .+|++++++|+.+- .
T Consensus 34 iLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 34 ILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 34444442 3448999999999999999999999889999999955 7777762 68999999999441 2
Q ss_pred -CCccEEEEcchhccCC----------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh
Q 018205 251 -PPADAFFFKAIFHAFV----------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313 (359)
Q Consensus 251 -p~~D~i~~~~vl~~~~----------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~ 313 (359)
..||+|+|+==.+..+ .-....+++.+.++|+| ||.+.++-...
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~e---------------- 173 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRPE---------------- 173 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecHH----------------
Confidence 2499999874333222 12245789999999999 89998865210
Q ss_pred hhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 314 DMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 314 ~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...+|.+++.+.+|...++..+
T Consensus 174 -------------rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 -------------RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred -------------HHHHHHHHHHhcCCCceEEEEe
Confidence 2356778888889988888776
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=97.67 Aligned_cols=134 Identities=15% Similarity=0.229 Sum_probs=94.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC-CC---CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS-IP---PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~-~p---~~D~i~~~~vl 262 (359)
++..+|||+|||+|.++..+++..|+.+++++|++. +++.|++ ..+++++.+|+++. .+ .||+|+++--.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 345699999999999999999999999999999954 8887762 34799999999653 22 49999985321
Q ss_pred ccCC-----------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh
Q 018205 263 HAFV-----------------------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV 319 (359)
Q Consensus 263 ~~~~-----------------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
..-. -+-..++++.+.+.|+| ||.+++ +....
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lil-EiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLL-EHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEE-EECcc---------------------
Confidence 0000 01134677788888998 776554 32110
Q ss_pred hcCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 320 AVRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 320 ~~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
..+.+.+++++.||..+++... .+...++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 2356778889999998777655 5556666553
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=91.47 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=98.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------------------------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------------------- 235 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------------------- 235 (359)
+..++.++..+-.+..+|||||.+|.++..+++.+....+.|+|+.. .++.|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 45566666556678999999999999999999999888999999954 7766651
Q ss_pred ----------------CCCceEee-------CCCCC-CCCCccEEEEcch----hccCCchHHHHHHHHHHHhcccCCCC
Q 018205 236 ----------------TDNLKFIA-------GDMFQ-SIPPADAFFFKAI----FHAFVDEDCLKILKRCREAIASRGDR 287 (359)
Q Consensus 236 ----------------~~~v~~~~-------~d~~~-~~p~~D~i~~~~v----l~~~~~~~~~~~L~~~~~~L~p~~~g 287 (359)
.+++.++. .||++ ..|.||+|+|-.+ =-+|.|+-..+++++++++|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 01222222 23433 2456999997543 2357899999999999999999 5
Q ss_pred cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 288 GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 288 G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
| ++|+|+-.... |........-.-+ ..-.-....+.+..++.+.+..
T Consensus 203 G-iLvvEPQpWks-----Y~kaar~~e~~~~-ny~~i~lkp~~f~~~l~q~~vg 249 (288)
T KOG2899|consen 203 G-ILVVEPQPWKS-----YKKAARRSEKLAA-NYFKIFLKPEDFEDWLNQIVVG 249 (288)
T ss_pred c-EEEEcCCchHH-----HHHHHHHHHHhhc-CccceecCHHHHHhhhhhhhhh
Confidence 5 55555443322 3222221111100 0112345789999999998433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=95.83 Aligned_cols=94 Identities=15% Similarity=0.323 Sum_probs=73.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEc------
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFK------ 259 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~------ 259 (359)
.+|||+|||+|.++..++..+|+.+++++|++. +++.|+. .++++++.+|++++++ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 689999999999999999999999999999954 8877662 2469999999987654 49999985
Q ss_pred -------chhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 260 -------AIFHAFVD----------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 260 -------~vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.++++-+. +....+++++.++|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 22222221 1456789999999999 776554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-10 Score=95.09 Aligned_cols=161 Identities=9% Similarity=0.155 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhcccc----h-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCc
Q 018205 166 FNSIYNQAMASDSQL----A-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNL 239 (359)
Q Consensus 166 ~~~~~~~~m~~~~~~----~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v 239 (359)
.+++|.......-.. . .+++.+.+ ..+..++||+|||||.+...|...- -+.+|+|+|+ |+++|.+..-.
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y 169 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY 169 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch
Confidence 345565544432222 1 45555555 3447899999999999999887763 3699999987 99998853322
Q ss_pred -eEeeCC---CCC--CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh
Q 018205 240 -KFIAGD---MFQ--SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313 (359)
Q Consensus 240 -~~~~~d---~~~--~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~ 313 (359)
.+.+.| |.. ....||+|+...||.++.+- ..++--+...|+| ||.+.+.....+....-
T Consensus 170 D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f---------- 234 (287)
T COG4976 170 DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDDGGF---------- 234 (287)
T ss_pred HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCCCCe----------
Confidence 222222 332 22359999999999999765 4599999999999 88777765555443210
Q ss_pred hhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 314 DMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 314 ~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
++........+..-..++++..||.++.+.++
T Consensus 235 ---~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 235 ---VLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred ---ecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 10011112235677899999999999999876
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=94.48 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=90.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-CCCceEeeCCCCCCC--CCccEEEEcchhccCCchH-
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-TDNLKFIAGDMFQSI--PPADAFFFKAIFHAFVDED- 269 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-~~~v~~~~~d~~~~~--p~~D~i~~~~vl~~~~~~~- 269 (359)
..+|||+|||+|.++..++++.+..+++++|++ .+++.++. .++++++.+|+++.. ..||+|+++--+++.+..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 479999999999999999888877899999995 48887764 467999999997632 2499999987777654332
Q ss_pred -----------------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 270 -----------------CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 270 -----------------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
..++++.+...|+| +|.++++ .... .+++ ...+.++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---yss~----------~~y~---------~sl~~~~y~ 199 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YSGR----------PYYD---------GTMKSNKYL 199 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Eecc----------cccc---------ccCCHHHHH
Confidence 13567777888888 7766665 1110 1121 124788899
Q ss_pred HHHHHcCCce
Q 018205 333 KLFLDAGFSH 342 (359)
Q Consensus 333 ~ll~~aGf~~ 342 (359)
++++++||..
T Consensus 200 ~~l~~~g~~~ 209 (279)
T PHA03411 200 KWSKQTGLVT 209 (279)
T ss_pred HHHHhcCcEe
Confidence 9999999874
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=94.08 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=74.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|++ ++++.|++ .++++++.+|+.+..+
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3445554 45668999999999999999998764 5689999995 47776652 2468999999965333
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++...+++++ +++.+.|+| ||.+++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 499999998876553 356788999 8988774
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.2e-10 Score=99.18 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC---CeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEEEEcchhccC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG---IKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~ 265 (359)
+..+|||+|||+|.++..+++..|. .+++++|++. +++.|.+ .+++.+..+|..+ +++ .||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999988764 3789999965 8887763 4678999999865 444 4999997543
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+ ..+++++++|+| ||.++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 246889999999 999998764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=93.26 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC----CCC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ----SIP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~----~~p--~~D~i~~~~ 260 (359)
...+|||||||+|.++..+++++|+.+++++|++. +++.|.. ..+++++.+|+.+ .++ .+|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45799999999999999999999999999999955 7776652 3589999999853 133 388888765
Q ss_pred hhccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFHAFVDED-------CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.. |+... ...+++++.++|+| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 432 22111 14689999999999 89988865
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=98.35 Aligned_cols=96 Identities=19% Similarity=0.380 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcc---
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKA--- 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~--- 260 (359)
+..+|||+|||+|.++..+++.+|+.+++++|++. +++.|+. .++++++.+|+++.++ .||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 45799999999999999999999999999999954 8877762 2579999999976555 499999851
Q ss_pred ----------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 ----------IFHAFVD----------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 ----------vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+++-+. +....+++++.+.|+| ||.+++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 0111111 1236789999999999 787665
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=87.69 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC--CC-CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS--IP-PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~--~p-~~D~i~~~~vl 262 (359)
...+|||+|||+|.++..|++..-....+|+|.++ .++.|+. .+.|+|.+.|++++ .+ .||+|+=...+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34499999999999999999885444689999965 7776651 45699999999874 33 49998855544
Q ss_pred ccC------CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 263 HAF------VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 263 ~~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
..+ ++......+..+.+.|+| ||.++|...+ +|.+|+.+.|+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHh
Confidence 332 222334578999999999 8888885532 36778888888
Q ss_pred HcCCceeEEEEeCC
Q 018205 337 DAGFSHFKITPVYG 350 (359)
Q Consensus 337 ~aGf~~~~~~~~~~ 350 (359)
.-||......+.+.
T Consensus 195 ~~~f~~~~tvp~pt 208 (227)
T KOG1271|consen 195 NFNFEYLSTVPTPT 208 (227)
T ss_pred cCCeEEEEeeccce
Confidence 88898877776653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-09 Score=100.42 Aligned_cols=131 Identities=18% Similarity=0.348 Sum_probs=93.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcc----
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKA---- 260 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~---- 260 (359)
..+|||+|||+|.++..++..+|+.+++++|+++ +++.|+. .++++++.+|+++..+ .||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 4689999999999999999999999999999965 8877762 3579999999876554 499999841
Q ss_pred ----------hhccCC------c----hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 261 ----------IFHAFV------D----EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 261 ----------vl~~~~------~----~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
+..+.+ . +....+++++.++|+| ||.+++ +... +
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~-~--------------------- 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF-K--------------------- 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC-c---------------------
Confidence 111111 0 1235678899999999 887765 3211 1
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEE
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEV 357 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~ 357 (359)
..+.+.+++.+.||..+++... .+...++.+
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 2345778888899987776654 555555544
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.7e-09 Score=88.33 Aligned_cols=98 Identities=21% Similarity=0.283 Sum_probs=74.7
Q ss_pred HHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C-C
Q 018205 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I-P 251 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~-p 251 (359)
+..+. ..+..+|||+|||+|.++..+++.. +..+++++|++ .+++.+++ .+++.++.+|+.+. . +
T Consensus 33 l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 33 LSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34455 5677899999999999999988764 56799999994 48776651 35789999998542 2 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.||.|++... ..+...+++.+.+.|+| ||.+++
T Consensus 111 ~~D~V~~~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 111 KFDRIFIGGG-----SEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCCEEEECCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence 5999998542 23446799999999999 888876
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=84.58 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=94.8
Q ss_pred hhhcccCccHHHHHHHHHhh-cccch----HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccc
Q 018205 157 WDYMAKNPDFNSIYNQAMAS-DSQLA----NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVP 231 (359)
Q Consensus 157 ~~~~~~~~~~~~~~~~~m~~-~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 231 (359)
++.+.++|+....|++..+. ...|. +.+++.+. ..++...|.|+|||.+.++..+.. ..+|..+|+-..
T Consensus 31 ~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-- 104 (219)
T PF05148_consen 31 LKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S--
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC--
Confidence 44455677766666655443 22232 55666665 234567999999999999876532 357999998331
Q ss_pred cCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH
Q 018205 232 KVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308 (359)
Q Consensus 232 ~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~ 308 (359)
.+ .+.+.|+.. |++ .+|+++++..|..- ....+|++++|+|+| ||.+.|+|....
T Consensus 105 ----n~--~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~---~G~L~IAEV~SR---------- 162 (219)
T PF05148_consen 105 ----NP--RVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKP---GGILKIAEVKSR---------- 162 (219)
T ss_dssp ----ST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG----------
T ss_pred ----CC--CEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheecc---CcEEEEEEeccc----------
Confidence 12 466688843 444 39999998888543 346799999999999 999999985431
Q ss_pred HHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 309 AKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
.-+.+++.+.++..||+..........+.+++.+
T Consensus 163 ----------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 163 ----------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp -----------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred ----------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 1145778899999999988876555556666543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-09 Score=89.89 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=84.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCCC---
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQSI--- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~~--- 250 (359)
.+..+||+.|||.|.-+..|+++ +.+|+|+|+++ .++.+. ...++++.++|+|+--
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999998 77899999966 666531 2458999999998731
Q ss_pred ---CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 251 ---PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 ---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..||+|+=..+|+.++.+...+..+++.++|+| ||.++++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~ 166 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEH 166 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEec
Confidence 249999999999999999999999999999999 89998887644
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=90.70 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=75.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI--- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~--- 250 (359)
..+++.+. +.+..+|||||||+|.++..+++.. ++.+++++|+. ++++.+++ ..+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34555555 5677899999999999999988875 45699999995 48877662 357999999986532
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..||+|++....+.. .+.+.+.|+| ||++++..
T Consensus 144 ~~fD~I~~~~~~~~~--------~~~l~~~Lkp---gG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDI--------PKPLIEQLKD---GGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccc--------hHHHHHhhCC---CcEEEEEE
Confidence 249999998766543 3456678999 89888843
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=86.67 Aligned_cols=103 Identities=16% Similarity=0.298 Sum_probs=74.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC---------CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p- 251 (359)
.+.+++. ...+..+|||+|||+|.++..+++++ +..+++++|++++. ...+++++.+|+.+. .+
T Consensus 22 ~~~~~~~-~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 22 QLNQKFK-LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred HHHHHhc-ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 3444444 24567899999999999999998887 56789999997643 235688898898542 22
Q ss_pred -CccEEEEcchhcc---CC------chHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 -PADAFFFKAIFHA---FV------DEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 -~~D~i~~~~vl~~---~~------~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+|+|++....|. |. .+....+|+.++++|+| ||.+++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4999998543221 11 12235789999999999 8988875
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.7e-09 Score=96.79 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=80.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p- 251 (359)
.+++.+. ......+||||||+|.++..+++++|+..++|+|+.. +++.+. ...++.++.+|+.. .++
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 4555554 3345699999999999999999999999999999954 666554 24579999999832 344
Q ss_pred -CccEEEEcchhccCCchH-----HHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 -PADAFFFKAIFHAFVDED-----CLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.+|.|+++... .|+... ...+|+.+.++|+| ||.+.+.+-.
T Consensus 191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~ 237 (390)
T PRK14121 191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDS 237 (390)
T ss_pred CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEEC
Confidence 49999876433 233221 14689999999999 9999886644
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=90.62 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=97.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------------CCCCceEeeCCCCCCC--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------------DTDNLKFIAGDMFQSI-- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------------~~~~v~~~~~d~~~~~-- 250 (359)
.....+||..|||.|.-+..|+++ +.+|+|+|+++ .++.+. ...+|++.++|+|+--
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999998 67999999966 666541 1457899999998721
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
..||+|+=...|+-++.+...+..+++.++|+| ||.++++....+..... +.-...+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~-----------------GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEME-----------------GPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSS-----------------SSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCC-----------------CcCCCCCH
Confidence 249999999999999999999999999999999 89966655544322110 00112378
Q ss_pred HHHHHHHHHcCCceeEEEE
Q 018205 329 KEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~ 347 (359)
+++.++|. .+|++.....
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 7888766654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=97.20 Aligned_cols=94 Identities=18% Similarity=0.367 Sum_probs=73.4
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcc-----
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKA----- 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~----- 260 (359)
.+|||+|||+|.++..+++.+|+.+++++|++. +++.|+. .++++++.+|+++..+ .||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 689999999999999999999999999999954 8887762 3579999999876554 499999861
Q ss_pred --------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 --------IFHAFVD----------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 --------vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+++.+. +....+++++.+.|+| ||.+++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1111111 2246789999999999 787765
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=5e-09 Score=95.05 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC-CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP-PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++. +..+++++|++. +++.|++ ..++.+...+.....+ .||+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4689999999999999887764 345899999954 8877662 2356666665422222 59999986543
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+....++++++++|+| ||.+++...
T Consensus 236 ---~~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 2345799999999999 898887653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.2e-09 Score=91.09 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCcch----HHHHHHHHC----C-CCeEEEeeccc-ccccCCC----------------------------
Q 018205 194 GLGSLVDVGGGTGS----FARIISEAF----P-GIKCTVLDLPH-VVPKVPD---------------------------- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~----p-~~~~~~~D~~~-~~~~a~~---------------------------- 235 (359)
+..+|+-.||++|. +++.+.+.. + +.++++.|++. +++.|+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999996 455555522 2 46899999965 8887761
Q ss_pred ------CCCceEeeCCCCCCCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 236 ------TDNLKFIAGDMFQSIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 236 ------~~~v~~~~~d~~~~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+|+|...|..+..| .||+|+|.|||-+++++...++++++++.|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3589999999977222 49999999999999999999999999999999 8888773
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-09 Score=89.79 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI---P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~---p 251 (359)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|++ ++++.|++ .++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 4455555 56778999999999999999999864 4679999994 58877762 357999999986532 2
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++.....+ +.+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 4999998765543 34557788999 8988874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-09 Score=89.03 Aligned_cols=101 Identities=17% Similarity=0.307 Sum_probs=75.9
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCC---CC-CC
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQ---SI-PP 252 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~-p~ 252 (359)
+++.+. ..+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ ..+++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 455555 45678999999999999999998888899999999 458776652 3578999998854 22 24
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+|.+++.. ......+++++.+.|+| ||.+++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 67765421 12346799999999999 898888764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=86.77 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=73.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~ 263 (359)
..+..+|||+|||+|.++..+++.. ..+++++|++. +++.++. ..+++++.+|+.+.++ .||+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4456899999999999999988763 34899999954 7765552 2357888999865443 499999863222
Q ss_pred cCCc-------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 264 AFVD-------------------EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 264 ~~~~-------------------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.-+. .....+++++.++|+| ||.++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1110 1135688999999999 89988865444
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-09 Score=94.63 Aligned_cols=97 Identities=21% Similarity=0.435 Sum_probs=75.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCC---CCC-CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQ---SIP-PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~---~~p-~~D~i~~~~ 260 (359)
+++.+|||||||+|.++..+++.+|+.+++++|+ +++++.|++ .++++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3568999999999999999999999999999999 568887662 4789999999843 233 599999752
Q ss_pred hhcc--CCch-HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 261 IFHA--FVDE-DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 261 vl~~--~~~~-~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++. .+.. ....+++++++.|+| ||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1111 125799999999999 8887774
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=84.43 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=107.0
Q ss_pred hhhhcccCccHHHHHHHHHhhc-ccch----HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccccc
Q 018205 156 FWDYMAKNPDFNSIYNQAMASD-SQLA----NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVV 230 (359)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~m~~~-~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 230 (359)
-++.+..+|+....|++..+.- ..|. +.+++.+. ..++...|.|+|||-+.++... .-+|..+|+-.+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~~-----~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASSE-----RHKVHSFDLVAV- 210 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhcc-----ccceeeeeeecC-
Confidence 4455567777777776654432 2232 55666665 2356789999999999887621 236888887432
Q ss_pred ccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHH
Q 018205 231 PKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLT 307 (359)
Q Consensus 231 ~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~ 307 (359)
+-.++..|+.. +.+ .+|+++++..|.- .....++++++++|++ ||.++|.|....
T Consensus 211 -------~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IAEv~SR--------- 268 (325)
T KOG3045|consen 211 -------NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIAEVKSR--------- 268 (325)
T ss_pred -------CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEEehhhh---------
Confidence 33566778854 443 4999998877753 2345699999999999 999999884321
Q ss_pred HHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 308 EAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
.-+...+.+.|...||...+.......+.+++.+
T Consensus 269 -----------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 269 -----------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred -----------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 1134558888999999988877766666666654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=89.55 Aligned_cols=127 Identities=14% Similarity=0.215 Sum_probs=89.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCce----EeeCCCCC-CC-CCccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLK----FIAGDMFQ-SI-PPADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~----~~~~d~~~-~~-p~~D~i~~~~vl 262 (359)
.++.+|||+|||+|-+++..++.. ..+++++|+. ..++.|++ .+++. ....+..+ .. ..||+|+++=.-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 578999999999999999988763 3479999994 47777773 33443 22222222 12 249999986432
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+-..++...+++.++| ||.+++.-... + ..+...+.+.++||.+
T Consensus 240 -----~vl~~La~~~~~~lkp---gg~lIlSGIl~-~---------------------------q~~~V~~a~~~~gf~v 283 (300)
T COG2264 240 -----EVLVELAPDIKRLLKP---GGRLILSGILE-D---------------------------QAESVAEAYEQAGFEV 283 (300)
T ss_pred -----HHHHHHHHHHHHHcCC---CceEEEEeehH-h---------------------------HHHHHHHHHHhCCCeE
Confidence 2346799999999999 78777754221 1 1355778889999999
Q ss_pred eEEEEeCCceeEEE
Q 018205 343 FKITPVYGIKSLIE 356 (359)
Q Consensus 343 ~~~~~~~~~~~vi~ 356 (359)
+++.....+.++..
T Consensus 284 ~~~~~~~eW~~i~~ 297 (300)
T COG2264 284 VEVLEREEWVAIVG 297 (300)
T ss_pred eEEEecCCEEEEEE
Confidence 99998877766554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=88.77 Aligned_cols=144 Identities=17% Similarity=0.214 Sum_probs=95.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCC-CccEEEEcchhccCCchHHH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIP-PADAFFFKAIFHAFVDEDCL 271 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~~~~~~~~ 271 (359)
...++||||+|.|..+..++..+.+ +++.|.+. |....+ ..+++++..+-+..-+ .||+|.|.|+|....++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~-~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLS-KKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHH-hCCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4578999999999999999998765 88889876 544433 3456666554444323 59999999999988766 5
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH--hhhhhhhhhcCCc--ccCHHHHHHHHHHcCCceeEEEE
Q 018205 272 KILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL--LYDMLMMVAVRGS--ERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 272 ~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~--~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
.+|+.++++|+| +|.++++-...-.. |.+... ...........|. +-..+.+.+.|+.+||+++....
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~p-----yVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRP-----YVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccc-----cEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 699999999999 78887765432111 000000 0000000011122 12344455899999999999988
Q ss_pred eCC
Q 018205 348 VYG 350 (359)
Q Consensus 348 ~~~ 350 (359)
.|.
T Consensus 241 ~PY 243 (265)
T PF05219_consen 241 LPY 243 (265)
T ss_pred cCc
Confidence 864
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=76.80 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=73.8
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCCC----CCccEEEEcchhccC
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQSI----PPADAFFFKAIFHAF 265 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~~----p~~D~i~~~~vl~~~ 265 (359)
+|+|+|||.|..+..+++ .+..+++++|++. .+..++ ...++++...|+.+.. +.+|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 6678999999954 554433 3567899999986532 359999999999874
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+....+++.+.+.|+| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 35567799999999999 8888764
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=89.64 Aligned_cols=126 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEee-CCCCCCCCCccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIA-GDMFQSIPPADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~-~d~~~~~p~~D~i~~~~vl~ 263 (359)
.+..+|||||||+|-+++..++.. ..+++++|+ |..++.|++ .+++.+.. .|. ....||+|+++-..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~--~~~~~dlvvANI~~- 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDL--VEGKFDLVVANILA- 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCT--CCS-EEEEEEES-H-
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccc--ccccCCEEEECCCH-
Confidence 456899999999999999888763 337999999 447777662 34554431 111 12359999975443
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
+....++..+.++|+| ||.+++.-... + ..+++.+.+++ ||.+.
T Consensus 236 ----~vL~~l~~~~~~~l~~---~G~lIlSGIl~-~---------------------------~~~~v~~a~~~-g~~~~ 279 (295)
T PF06325_consen 236 ----DVLLELAPDIASLLKP---GGYLILSGILE-E---------------------------QEDEVIEAYKQ-GFELV 279 (295)
T ss_dssp ----HHHHHHHHHCHHHEEE---EEEEEEEEEEG-G---------------------------GHHHHHHHHHT-TEEEE
T ss_pred ----HHHHHHHHHHHHhhCC---CCEEEEccccH-H---------------------------HHHHHHHHHHC-CCEEE
Confidence 4456789999999999 77777644332 2 13456677776 99999
Q ss_pred EEEEeCCceeEEEEe
Q 018205 344 KITPVYGIKSLIEVY 358 (359)
Q Consensus 344 ~~~~~~~~~~vi~~~ 358 (359)
+......+.++..-+
T Consensus 280 ~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 280 EEREEGEWVALVFKK 294 (295)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEECCEEEEEEEe
Confidence 999888877765443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-08 Score=87.07 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=86.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCceEeeCCCCCCCC-----CccEEEEcchh--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMFQSIP-----PADAFFFKAIF-- 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~~~~p-----~~D~i~~~~vl-- 262 (359)
+..+|||+|||+|.++..+++..|+.+++++|++ .+++.|++ ..+++++.+|+++..+ .||+|+++--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3468999999999999999999999999999995 48887763 2346889999865432 49999976311
Q ss_pred ----ccCCch------------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 263 ----HAFVDE------------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 263 ----~~~~~~------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
...+++ -...+++.+.++|+| ||.+++.. . .+
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~-~-~~--------------------- 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVET-S-ER--------------------- 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE-C-cc---------------------
Confidence 111111 134788888999999 88877642 1 11
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...++.++|++.||+..-..+-
T Consensus 220 ------~~~~v~~~l~~~g~~~~~~~~~ 241 (251)
T TIGR03704 220 ------QAPLAVEAFARAGLIARVASSE 241 (251)
T ss_pred ------hHHHHHHHHHHCCCCceeeEcc
Confidence 1234667788888886555444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.6e-09 Score=87.87 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCC--CC----C-C--C-CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDM--FQ----S-I--P-PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~--~~----~-~--p-~~D~i~~~~vl 262 (359)
....++|||||+|..++.++..+.. ++++|+++ |++.|++..+++....-. -+ + . + ++|+|++...+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 4458999999999888998888654 99999965 999999877666655432 11 1 1 1 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|.+.. .++.+.++++|++ +||.+.+-...
T Consensus 111 HWFdl---e~fy~~~~rvLRk--~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWFDL---ERFYKEAYRVLRK--DGGLIAVWNYN 139 (261)
T ss_pred Hhhch---HHHHHHHHHHcCC--CCCEEEEEEcc
Confidence 98854 4599999999998 25555554444
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.3e-09 Score=80.46 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=73.4
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC---CCC--CccEEEEcchh
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ---SIP--PADAFFFKAIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl 262 (359)
.+|||+|||+|.++..+++.. ..+++++|+ +..++.++ ..++++++.+|+++ ..+ .||+|+++--+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 44766665 14689999999955 233 59999997666
Q ss_pred ccCC------chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFV------DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.... .+....+++++.++|+| ||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 5421 12346799999999999 888887643
|
... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-08 Score=86.59 Aligned_cols=129 Identities=18% Similarity=0.322 Sum_probs=90.3
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC-CccEEEEc--chhcc--
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP-PADAFFFK--AIFHA-- 264 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p-~~D~i~~~--~vl~~-- 264 (359)
+|||+|||+|..+..+++..|+++++++|++ ..++.|+. ..++.++.+|.+++.+ .||+|+++ ++=..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 8999999999999999999999999999995 48877762 2566777779888766 59999976 11110
Q ss_pred -C----------------C--chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcc
Q 018205 265 -F----------------V--DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSE 325 (359)
Q Consensus 265 -~----------------~--~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 325 (359)
. . -+-..+++..+.+.|+| ||.+++ +.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~l-e~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLIL-EIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEE-EECCC---------------------------
Confidence 0 0 12345788888889998 554444 42211
Q ss_pred cCHHHHHHHHHHcC-CceeEEEEe-CCceeEEEE
Q 018205 326 RTEKEWEKLFLDAG-FSHFKITPV-YGIKSLIEV 357 (359)
Q Consensus 326 ~t~~~~~~ll~~aG-f~~~~~~~~-~~~~~vi~~ 357 (359)
..+...++|.+.| |..+..... .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 2466889999999 665555554 455555544
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=87.98 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=81.7
Q ss_pred CCCeEEEeCCCcch----HHHHHHHHCC-----CCeEEEeeccc-ccccCCC----------------------------
Q 018205 194 GLGSLVDVGGGTGS----FARIISEAFP-----GIKCTVLDLPH-VVPKVPD---------------------------- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~~~-~~~~a~~---------------------------- 235 (359)
+..+|+-.||++|. +++.+.+.+| .+++++.|++. +++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999995 6777777776 47999999965 8887761
Q ss_pred -------CCCceEeeCCCCCC--CC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 236 -------TDNLKFIAGDMFQS--IP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 236 -------~~~v~~~~~d~~~~--~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...|.|...|..++ .+ .||+|+|.|||-++..+...+++++++..|+| ||.|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence 24788889998763 34 39999999999999999889999999999999 88888843
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-08 Score=88.97 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=84.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
+.+..+|||.|||+|.++...+.. +.+++++|++. +++.++. ...+.+..+|+.+ +.+ .||+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456789999999999999887654 67899999954 8776552 2347899999965 332 4999998522
Q ss_pred hc-------cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 262 FH-------AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 262 l~-------~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
.. +...+...++|+++.+.|+| ||++++..+.. .+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~~-------------------------------~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPTR-------------------------------IDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcCC-------------------------------CCHHHH
Confidence 11 11112246799999999999 89888754211 125567
Q ss_pred HHHcCCceeEEEEe
Q 018205 335 FLDAGFSHFKITPV 348 (359)
Q Consensus 335 l~~aGf~~~~~~~~ 348 (359)
++++|| +......
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 888999 7666654
|
This family is found exclusively in the Archaea. |
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-09 Score=67.53 Aligned_cols=49 Identities=47% Similarity=0.835 Sum_probs=42.8
Q ss_pred HHHHHHHhcCcchhcccCC-CCCCHHHHHHhcC-CCCCCcccHHHHHHHHH
Q 018205 30 TSLKCAVELDIPEVIHKHG-RPITLPQLVSALE-INPTKADGLFKLMRLLV 78 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~-~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~ 78 (359)
++|++|++|||||.|.++| +++|+.||+.++. .+|.+...|.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5799999999999999976 7999999999999 77767789999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.1e-08 Score=88.09 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=77.0
Q ss_pred CCeEEEeCCCcch----HHHHHHHHCC----CCeEEEeeccc-ccccCCC------------------------------
Q 018205 195 LGSLVDVGGGTGS----FARIISEAFP----GIKCTVLDLPH-VVPKVPD------------------------------ 235 (359)
Q Consensus 195 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~~~-~~~~a~~------------------------------ 235 (359)
..+|+..||++|. +++.+.+..+ ++++++.|++. +++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999996 5555555432 46899999965 8877651
Q ss_pred -------CCCceEeeCCCCC-CCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 236 -------TDNLKFIAGDMFQ-SIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 236 -------~~~v~~~~~d~~~-~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+|+|...|..+ +.| .||+|+|.+++.|++++...+++++++++|+| ||.+++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1467888899876 333 49999999999999999899999999999999 8877663
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.7e-08 Score=89.88 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----------CCCceEeeCCCCCC----CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----------TDNLKFIAGDMFQS----IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----------~~~v~~~~~d~~~~----~p~~D~i 256 (359)
+++.+||+||||.|..+..+++..+..+++++|+. .+++.|++ .+|++++.+|..+- ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45789999999999999999876555689999994 58877762 46899999998542 1249999
Q ss_pred EEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEE
Q 018205 257 FFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 257 ~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli 292 (359)
++...-...+... ...+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9854332222211 25689999999999 787665
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=82.67 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=71.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP---P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p---~ 252 (359)
.++..+. ..+..+|||||||+|..+..+++.. .+++++|.+ .+++.+++ ..++++..+|..+..+ .
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3344444 5567899999999999998887774 379999995 47766652 3468999999865433 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
||+|++...++++ .+.+.+.|+| ||.+++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 9999998766544 3556789999 88888754
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=82.33 Aligned_cols=140 Identities=22% Similarity=0.383 Sum_probs=81.1
Q ss_pred CCCeEEEeCCCc---chHHHHHHHHCCCCeEEEeec-ccccccCC----CCCC--ceEeeCCCCCC-----CC---C-cc
Q 018205 194 GLGSLVDVGGGT---GSFARIISEAFPGIKCTVLDL-PHVVPKVP----DTDN--LKFIAGDMFQS-----IP---P-AD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~--v~~~~~d~~~~-----~p---~-~D 254 (359)
+...+||||||- |..-.-..+..|+.+++.+|. |-++..++ ..++ ..++.+|+.++ -| . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999995 455554455689999999999 44888777 2444 89999999763 12 1 33
Q ss_pred -----EEEEcchhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 255 -----AFFFKAIFHAFVD-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 255 -----~i~~~~vl~~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
.+++..+||+++| ++...+++.+++.|.| |+.|.|.....+.. .. ...............+..||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~-p~----~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGA-PE----RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTS-HH----HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCC-HH----HHHHHHHHHHcCCCCceecCH
Confidence 6889999999987 6788999999999999 77777766654332 11 111222222222345678999
Q ss_pred HHHHHHHHHcCCcee
Q 018205 329 KEWEKLFLDAGFSHF 343 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~ 343 (359)
+++.++|. ||..+
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999995 77754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=91.35 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=72.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeec-ccccccCCC-------------CCCceEeeCCCCC---CCC-Cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDL-PHVVPKVPD-------------TDNLKFIAGDMFQ---SIP-PA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~d~~~---~~p-~~ 253 (359)
+++.+|||||||+|..+..+++ +|. .+++++|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999987 455 79999999 558887764 3689999999854 222 59
Q ss_pred cEEEEcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 254 DAFFFKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 254 D~i~~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999986432221111 123589999999999 8877764
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-08 Score=89.05 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------------CCCceEeeCCCCCC---C-CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------------TDNLKFIAGDMFQS---I-PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------------~~~v~~~~~d~~~~---~-p~~D 254 (359)
..+.+||+||||.|..+..+++..+..+++++|++ ++++.|+. .+|++++.+|..+. . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45789999999999999998876556799999995 58887662 57999999998642 2 2499
Q ss_pred EEEEcchhc---cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFKAIFH---AFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~~vl~---~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+|++...-. ....--...+++.+++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999863210 01111225689999999999 8877664
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=87.30 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=78.9
Q ss_pred Hhhcccch-HHHHHhccccc---CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------------C
Q 018205 174 MASDSQLA-NLIVKDCQPIF---QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------T 236 (359)
Q Consensus 174 m~~~~~~~-~~~~~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------~ 236 (359)
|+....|. ..++..+.... .+..+|||+|||-|.-+....... -..++|+|++. .++.|++ .
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~ 116 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQ 116 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhcccccccc
Confidence 33333444 44555553111 167899999999999888887764 33899999965 7776651 1
Q ss_pred ----CCceEeeCCCCCC-----C--C--CccEEEEcchhccC--CchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 237 ----DNLKFIAGDMFQS-----I--P--PADAFFFKAIFHAF--VDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 237 ----~~v~~~~~d~~~~-----~--p--~~D~i~~~~vl~~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
-...++.+|.+.. + + .||+|-|...+|+. +.+.+..+|+++.+.|+| ||.++...+.
T Consensus 117 ~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~d 188 (331)
T PF03291_consen 117 YRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTPD 188 (331)
T ss_dssp SEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-
T ss_pred ccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEecC
Confidence 2346677877541 1 2 49999999999994 566778899999999999 7777766544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=78.46 Aligned_cols=81 Identities=19% Similarity=0.388 Sum_probs=60.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCC--cc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPP--AD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~--~D 254 (359)
.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|++. +++.+++ .++++++.+|+.+ +.+. +|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 4556665 556789999999999999999988 56899999954 7766552 4689999999966 3443 88
Q ss_pred EEEEcchhccCCch
Q 018205 255 AFFFKAIFHAFVDE 268 (359)
Q Consensus 255 ~i~~~~vl~~~~~~ 268 (359)
.|+++- -++...+
T Consensus 80 ~vi~n~-Py~~~~~ 92 (169)
T smart00650 80 KVVGNL-PYNISTP 92 (169)
T ss_pred EEEECC-CcccHHH
Confidence 887654 4444433
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-07 Score=84.53 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---CCC--CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
+++.+||+||||.|.++..+++..+..+++.+|++. +++.+++ .+|++++.+|... ..+ .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999998753345899999955 7776652 4699999999743 332 49999
Q ss_pred EEcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEE
Q 018205 257 FFKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 257 ~~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
++-..-...+.. -...+++.+++.|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985432221111 134689999999999 787755
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.4e-07 Score=84.76 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=72.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI---P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~---p 251 (359)
.+++.++ .++..+|||||||+|.++..+++..+. .+++++|++ ++++.|++ .+++.++.+|..+.. .
T Consensus 71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 4445454 556789999999999999999998753 479999995 47766652 357899999985432 2
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|++...+++. ...+.+.|+| ||.+++..
T Consensus 149 ~fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 49999987655443 2345678999 89887743
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-07 Score=94.24 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------------------CCCceEeeCCCCCCCC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------------------TDNLKFIAGDMFQSIP 251 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------------------~~~v~~~~~d~~~~~p 251 (359)
..+|||+|||+|..+..+++++|..+++++|++. +++.|+. .+|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999999989999999954 7776641 1479999999977543
Q ss_pred ----CccEEEEc
Q 018205 252 ----PADAFFFK 259 (359)
Q Consensus 252 ----~~D~i~~~ 259 (359)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999975
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=83.52 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---C-CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---S-IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~-~p~~D~i~ 257 (359)
+++.+||+||||+|.++..+++..+..+++++|++. +++.+++ .++++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345799999999999999998876667899999954 7766552 3678888888744 1 22599999
Q ss_pred EcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+......-+... ..++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 865432222222 35789999999999 8887775
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.8e-07 Score=81.90 Aligned_cols=136 Identities=13% Similarity=0.248 Sum_probs=87.0
Q ss_pred CCChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC----CCeEEEeeccc
Q 018205 153 GTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP----GIKCTVLDLPH 228 (359)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~~~ 228 (359)
|..+|+.+...|++.-.-.+ +.-.......+.+.++ +...|+|+|||+|.-+..|++... ...++.+|++.
T Consensus 40 Gs~LFe~It~lpEYYptr~E-~~iL~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 40 GLKLFEEITYSPEYYLTNDE-IEILKKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred HHHHHHHHHcCCccCChHHH-HHHHHHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 56667766666654211000 0000000135555544 456899999999998777766653 46799999975
Q ss_pred -ccccCC------CCCCceE--eeCCCCCC---CC------CccEE-EEcchhccCCchHHHHHHHHHHH-hcccCCCCc
Q 018205 229 -VVPKVP------DTDNLKF--IAGDMFQS---IP------PADAF-FFKAIFHAFVDEDCLKILKRCRE-AIASRGDRG 288 (359)
Q Consensus 229 -~~~~a~------~~~~v~~--~~~d~~~~---~p------~~D~i-~~~~vl~~~~~~~~~~~L~~~~~-~L~p~~~gG 288 (359)
+++.+. ..+.+++ +.+|+.+. ++ ...++ ++...+.+++++++..+|+++++ .|+| |+
T Consensus 115 ~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d 191 (319)
T TIGR03439 115 SELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SD 191 (319)
T ss_pred HHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CC
Confidence 666543 2345555 78888442 21 24444 45679999999999999999999 9999 77
Q ss_pred EEEE-Eeee
Q 018205 289 KVII-IDIV 296 (359)
Q Consensus 289 ~lli-~~~~ 296 (359)
.++| +|..
T Consensus 192 ~lLiG~D~~ 200 (319)
T TIGR03439 192 SFLIGLDGC 200 (319)
T ss_pred EEEEecCCC
Confidence 7776 4433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-07 Score=75.71 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=76.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCCCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~p--- 251 (359)
..+++.+. +++..+|||||||+|..+.-+++.-. +++.+|. ++..+.|++ ..+|.+.++|-..-+|
T Consensus 62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 34566666 77889999999999999999988753 8999998 557777762 5569999999966444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||.|+........|+. +++ .|++ ||++++-..
T Consensus 138 PyD~I~Vtaaa~~vP~~----Ll~----QL~~---gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA----LLD----QLKP---GGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCHH----HHH----hccc---CCEEEEEEc
Confidence 49999998887666532 444 5899 899998664
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.5e-07 Score=77.28 Aligned_cols=105 Identities=17% Similarity=0.331 Sum_probs=84.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHH-HCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCCC-CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISE-AFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQS-IP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~-~p 251 (359)
..++.... +.+.++|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|++ .+++++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 35566666 78899999999999999999997 457779999999 458877763 46699999999663 33
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.||.|++ +++++ ...+.+++++|+| ||.+.+..++.+
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 5999987 56666 5699999999999 899999776654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.3e-07 Score=77.34 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=69.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHC---CCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEEEcchhccCC-
Q 018205 195 LGSLVDVGGGTGSFARIISEAF---PGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFV- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~- 266 (359)
..+|||+|||+|.++..++++. +..+++++|+.. +++.|+. ..++.+..+|+.. ... .||+|+++==++...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 367999999954 8888874 4578999999965 333 599999874433221
Q ss_pred -c--------hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 267 -D--------EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 267 -~--------~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+ .-...+++++.+++++ |.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 1 2245689999997776 66644
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-07 Score=78.64 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---------CCCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---------IPPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---------~p~~D 254 (359)
.++.+|||+|||+|..+..++...+ +.+++.+|++ ++++.|++ .++++++.+|..+. .+.||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4578999999999999888888765 6799999994 47776652 46899999998542 12599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++-. ..+....++..+.+.|+| ||. ++++....
T Consensus 147 ~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~-ii~dn~l~ 181 (234)
T PLN02781 147 FAFVDA-----DKPNYVHFHEQLLKLVKV---GGI-IAFDNTLW 181 (234)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCC---CeE-EEEEcCCc
Confidence 998732 234456789999999999 665 55555443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.6e-07 Score=78.47 Aligned_cols=100 Identities=16% Similarity=0.319 Sum_probs=71.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC------CCCCceEeeCCCCCCCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~p-- 251 (359)
..+++.+. +.+..+|||||||+|.++..+++.. +.-+++++|. +...+.|+ ...++.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 45666676 7788999999999999999998875 3447999999 55777776 25689999999865443
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||.|++.......+ ..+.+.|++ ||++++.-
T Consensus 140 apfD~I~v~~a~~~ip--------~~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIP--------EALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS----------HHHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHH--------HHHHHhcCC---CcEEEEEE
Confidence 499999988775443 234456899 88888744
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.1e-07 Score=79.43 Aligned_cols=103 Identities=19% Similarity=0.239 Sum_probs=77.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CC----CceEeeCCCCC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TD----NLKFIAGDMFQ- 248 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~----~v~~~~~d~~~- 248 (359)
.++..+. ++...++|+|||-|.-++..-++. --.++++|+.+ .++.|+. .. .+.|+++|.+.
T Consensus 109 ~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHh---ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 4444443 567889999999999888877663 22799999977 7887762 11 36888898853
Q ss_pred --------CCCCccEEEEcchhcc-C-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 249 --------SIPPADAFFFKAIFHA-F-VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 249 --------~~p~~D~i~~~~vl~~-~-~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.|.||+|-|.+++|+ | +.+.++.+|+++.+.|+| ||.+|-
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg 235 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG 235 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence 1235999999999998 3 466778899999999999 776554
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=83.48 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=78.0
Q ss_pred HHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---C-C-Cc
Q 018205 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---I-P-PA 253 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~-p-~~ 253 (359)
+..++ ..+..+|||+|||+|..+..+++..++.+++++|++. +++.+++ ..+++++.+|+.+. . + .|
T Consensus 237 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 237 ATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 33444 4567899999999999999999998778999999954 7776652 22478899998642 1 2 49
Q ss_pred cEEEE----cc--hhcc-------CCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFF----KA--IFHA-------FVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~----~~--vl~~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|.|++ +. ++.. ...++ ..++|+++.+.|+| ||.+++.+.....
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~ 377 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILP 377 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 99994 22 1111 11111 24689999999999 8999887765443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-06 Score=70.87 Aligned_cols=120 Identities=16% Similarity=0.200 Sum_probs=87.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC-CCC-----CccEEEEcchhccCCch
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-SIP-----PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p-----~~D~i~~~~vl~~~~~~ 268 (359)
..++|||||=+...... ..+-..++.+|+... .-.+.+.||++ ++| .||+|.++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999964433222 244557999998331 12456688876 565 39999999999999855
Q ss_pred -HHHHHHHHHHHhcccCCCCcE-----EEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 269 -DCLKILKRCREAIASRGDRGK-----VIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 269 -~~~~~L~~~~~~L~p~~~gG~-----lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+.-++|+++++.|+| +|. ++|+-+... ..|.+..+.+.|.++++..||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 556899999999999 787 666532211 13456678999999999999999
Q ss_pred eEEEEeC
Q 018205 343 FKITPVY 349 (359)
Q Consensus 343 ~~~~~~~ 349 (359)
++.....
T Consensus 177 ~~~~~~~ 183 (219)
T PF11968_consen 177 VKYKKSK 183 (219)
T ss_pred EEEEecC
Confidence 8887664
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=78.20 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeC----CCCCCC--C--CccEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAG----DMFQSI--P--PADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~----d~~~~~--p--~~D~i 256 (359)
...++||||||+|.....++.+.++++++++|++. +++.|+. .++|++... +++..+ + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 45899999999999888888888899999999954 8877762 246777542 333322 2 49999
Q ss_pred EEcchhccCCchHH---HHHHHH----------------HHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 257 FFKAIFHAFVDEDC---LKILKR----------------CREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 257 ~~~~vl~~~~~~~~---~~~L~~----------------~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+|+==+|.-..+.. ..-.+. ..+++.+ ||.+-++.....+... + .....+-..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~---~-~~~~gwfts- 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKA---F-AKQVLWFTS- 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHH---H-HhhCcEEEE-
Confidence 99877765443311 111221 1233344 5665554443332210 0 000011111
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.-|+.-+.+.+.+.|++.|.+.+.+..+
T Consensus 266 ---mv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 266 ---LVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred ---EeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1244558999999999999988888776
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=82.93 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=78.7
Q ss_pred HHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC-C----C
Q 018205 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS-I----P 251 (359)
Q Consensus 185 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~-~----p 251 (359)
...++ ..+..+|||+|||+|..+..+++..+..+++++|++. +++.+++ ..++.+..+|.... . .
T Consensus 231 ~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 231 ATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 34444 4566899999999999999999988877999999954 7766552 11334466776431 1 2
Q ss_pred CccEEEE------cchhccCCc-------hH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 252 PADAFFF------KAIFHAFVD-------ED-------CLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 252 ~~D~i~~------~~vl~~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.||.|++ ..+++..++ ++ ..++|+++.+.|+| ||.+++.+......
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~ 374 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPE 374 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 4999985 245554433 11 25799999999999 99999988777543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=68.53 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=88.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-cccccc-CCCCCCceEeeCCCCC-C-----C--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPK-VPDTDNLKFIAGDMFQ-S-----I-- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~-a~~~~~v~~~~~d~~~-~-----~-- 250 (359)
+.+.+.++ +..+.-|+|+|.|+|.++.+++++. +..+++.++. ++.... -+..+.++++.+|.++ . .
T Consensus 38 ~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 38 RKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred HHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 55666666 6677899999999999999998874 5568999998 454444 3457888899999864 1 2
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+.||.|++.--+-.++-....++|+++...|++ ||.++-+.+.
T Consensus 116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred CeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 349999999988899988888999999999999 8888887766
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-06 Score=81.97 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=75.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEc--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFK-- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~-- 259 (359)
..++.+|||+|||+|..+..+++..+ ..+++++|++. +++.+++ ..+++++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34568999999999999998888654 45899999955 8776652 2468999999855323 49999951
Q ss_pred ----chhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 ----AIFH-------AFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 ----~vl~-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++. .++.++ ..++|.++.+.|+| ||.+++.+.....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~ 382 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEP 382 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 1111 122222 23689999999999 8999887766653
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.3e-06 Score=82.60 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~p-~~D~i~~~ 259 (359)
..+..+|||+|||+|..+..+++.. ++.+++++|++. +++.+++ ..+++++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999886 567999999954 7766542 24589999998542 33 59999963
Q ss_pred c------hhccC-------CchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 A------IFHAF-------VDED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~------vl~~~-------~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
- ++.+. ...+ ...+|+.+.++|+| ||.+++......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~ 383 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTIE 383 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCCC
Confidence 1 11111 1111 14689999999999 899887665543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=72.97 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=65.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---------CCCCceEeeCCCCCCC------C-CccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---------DTDNLKFIAGDMFQSI------P-PADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~v~~~~~d~~~~~------p-~~D~ 255 (359)
...+.+|||+|||+|..+..++...+..+++..|.++.++..+ ...++.+...|--++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4467899999999999999999886777999999976554333 1467788877763321 2 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
|+.+.++++ ++....+++.+.++|++ +|.+++....+.
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R~ 160 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRRR 160 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S-
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEec
Confidence 999999986 36667899999999999 777777766653
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-06 Score=79.58 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=66.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC-----
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS----- 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~----- 249 (359)
..+++.+. ..+..+|||+|||+|.++..+++.. .+++++|++. +++.|++ ..+++++.+|+.+.
T Consensus 287 ~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 34444444 3456899999999999999999884 5899999965 8887762 34699999998532
Q ss_pred C--CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 250 I--PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 250 ~--p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+ ..||+|++.- |......+++.+.+ ++| ++.+++
T Consensus 363 ~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 363 WALGGFDKVLLDP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred hhcCCCCEEEECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 1 1389998632 22222345565555 577 455444
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=73.46 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=67.8
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC------CCCCceEeeCCCCCC----CC--CccEEEEcchh
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP------DTDNLKFIAGDMFQS----IP--PADAFFFKAIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~------~~~~v~~~~~d~~~~----~p--~~D~i~~~~vl 262 (359)
..+||||||.|.++..+|+.+|+..++|+|+. ..+..+. ...++.++.+|+..- ++ ..|-|.+.+-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 38999999999999999999999999999994 3554443 478999999998541 22 36766654321
Q ss_pred ccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDE-------DCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.|+.. -...+|+.+.++|+| ||.|.+.+-
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~TD 134 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEES
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEeC
Confidence 12211 124799999999999 898888663
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=72.77 Aligned_cols=93 Identities=15% Similarity=0.305 Sum_probs=68.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCCCCC--ceEeeCCCCCCCC---C-ccEEEEcchhc---
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDN--LKFIAGDMFQSIP---P-ADAFFFKAIFH--- 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~--v~~~~~d~~~~~p---~-~D~i~~~~vl~--- 263 (359)
.+.-|||||||+|..+..|... +...+|+|++ .|++.|.+ .. -.++.+|+-+.+| + ||.+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 4788999999999988887765 5789999995 49998874 22 3577788865443 3 99888654432
Q ss_pred ------cCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 264 ------AFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 264 ------~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|.+......++..++.+|++ |++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 22344556788999999999 777665
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=75.69 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=60.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCCccE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPPADA 255 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~~D~ 255 (359)
..+++.++ ..+..+|||||||+|.++..++++ ..+++++|++. +++.+++ .++++++.+|+++ +++.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 34555554 456789999999999999999998 45899999954 7766552 4689999999976 5667898
Q ss_pred EEEcchhccCC
Q 018205 256 FFFKAIFHAFV 266 (359)
Q Consensus 256 i~~~~vl~~~~ 266 (359)
|+++-- ++.+
T Consensus 95 Vv~NlP-y~i~ 104 (258)
T PRK14896 95 VVSNLP-YQIS 104 (258)
T ss_pred EEEcCC-cccC
Confidence 877544 3444
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-07 Score=76.87 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=74.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCCC-------CCCceEeeCCCCCC---------CCCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQS---------IPPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~---------~p~~D 254 (359)
.++++|||||+++|.-+..+++..| +.+++.+|+ ++..+.|++ .++|+++.+|..+. ...||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4579999999999999999999886 689999999 447666652 57999999998541 12499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++-. ........+..+.+.|+| |.++|+|....
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 999744 345567789999999999 66777776654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-06 Score=73.10 Aligned_cols=103 Identities=17% Similarity=0.307 Sum_probs=75.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-CC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-SI-- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-~~-- 250 (359)
.++..++ +.++.+|||.|.|+|.++..|++. .|.-+++.+|.. +..+.|++ .+++++...|+.+ .+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4556666 778999999999999999999975 588899999994 47776662 5689999999843 23
Q ss_pred ---CCccEEEEcchhccCCchHHHHHHHHHHHhc-ccCCCCcEEEEEeeec
Q 018205 251 ---PPADAFFFKAIFHAFVDEDCLKILKRCREAI-ASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 ---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L-~p~~~gG~lli~~~~~ 297 (359)
..+|.|++ +++++ ...+..+.++| ++ ||.+.+..++.
T Consensus 109 ~~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~---gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDP--WEAIPHAKRALKKP---GGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCH--HHHHHHHHHHHhcC---CceEEEECCCH
Confidence 24899886 56666 44899999999 88 89998877554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=69.15 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=86.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccc-cCCCCCCce-EeeCCCCC----CC----
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVP-KVPDTDNLK-FIAGDMFQ----SI---- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~-~a~~~~~v~-~~~~d~~~----~~---- 250 (359)
..+++.++ ...+..++||+|||+|.++..+++.. ..+++++|++. ++. ..++..++. +...|+.. .+
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 45555554 12356799999999999999999873 45899999955 554 355556654 33334421 11
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
+.+|+++++..+ +|..+.++|+| +-.++++.+.+.-..... .......|-. ......++
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KPqFE~~~~~~--~~~giv~~~~------~~~~~~~~ 200 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKPQFEAGREKK--NKKGVVRDKE------AIALALHK 200 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcChHhhhcHhhc--CcCCeecCHH------HHHHHHHH
Confidence 237777766543 57888889998 555556654443322100 0000000000 01224567
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
+...+.+.||++..+.+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 201 VIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHcCCCeEeeEEECC
Confidence 7778888999988887664
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.5e-06 Score=79.14 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=76.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCC-------CCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSI-------PPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~-------p~~D~i 256 (359)
..+..+|||+|||+|..+..+++..+ ..+++++|++. +++.+++ ..+++++.+|..+.. ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 44568999999999999999998864 46899999954 7776652 346899999985421 149999
Q ss_pred EEc------chhccCCc-------hH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 257 FFK------AIFHAFVD-------ED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 257 ~~~------~vl~~~~~-------~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
++. .++++.++ ++ ..++|+++.+.|+| ||.++..+....
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi~ 388 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTLH 388 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 962 34444332 11 25789999999999 899888776554
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=83.18 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=81.1
Q ss_pred CChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccc--cCCCCeEEEeCCCcchHHHHHHHHC----CCCeEEEeecc
Q 018205 154 TVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI--FQGLGSLVDVGGGTGSFARIISEAF----PGIKCTVLDLP 227 (359)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~ 227 (359)
...|+.+++|+...+.|.+|+.. ++.+..... -.+...|+|||||+|-++...+++. ...++++++-.
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEE------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHH------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred cccHhhHhcCHHHHHHHHHHHHH------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 34577788888888888877642 333333210 1135789999999999987776654 34689999974
Q ss_pred c-ccccC----C--C-CCCceEeeCCCCC-CCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 228 H-VVPKV----P--D-TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 228 ~-~~~~a----~--~-~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
. ++... + . .++|+++.+|+.+ ..| .+|+|++=..=.....+-..+.|....+.|+| +| ++|
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~G-i~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DG-IMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EE-EEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CC-EEe
Confidence 3 22221 1 1 5889999999976 556 49999974443222334556788888999999 54 444
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=72.25 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCc--eEeeCCCCC-CCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNL--KFIAGDMFQ-SIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v--~~~~~d~~~-~~p--~~D~i~~~~vl~~ 264 (359)
.....++|||||-|.....+.... --+.+-+|.+. |++.++. .+.+ ....+|-.. ++. .+|+|+++..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456789999999999999998774 23789999976 8888773 2444 555666522 333 4999999999987
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc------ccCHHHHHHHHHHc
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS------ERTEKEWEKLFLDA 338 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~t~~~~~~ll~~a 338 (359)
.++ .+..+.+|+.+||| +| ++|......+. +.+......+..+-..+|- .-...++-.+|.+|
T Consensus 150 ~Nd--LPg~m~~ck~~lKP---Dg-~FiasmlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKP---DG-LFIASMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hcc--CchHHHHHHHhcCC---Cc-cchhHHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 654 46799999999999 55 55655555443 3333332333322222332 22467888999999
Q ss_pred CCceeEEE
Q 018205 339 GFSHFKIT 346 (359)
Q Consensus 339 Gf~~~~~~ 346 (359)
||....+-
T Consensus 219 GF~m~tvD 226 (325)
T KOG2940|consen 219 GFSMLTVD 226 (325)
T ss_pred Ccccceec
Confidence 99976553
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=75.13 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=62.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCCcc-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPPAD- 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~~D- 254 (359)
..+++.++ ..+..+|||||||+|.++..++++.+ +++++|+++ +++.++. ..+++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 45555555 55678999999999999999999975 499999954 7766552 4689999999965 444566
Q ss_pred -EEEEcchhccCCchHHHHHHHHHHH
Q 018205 255 -AFFFKAIFHAFVDEDCLKILKRCRE 279 (359)
Q Consensus 255 -~i~~~~vl~~~~~~~~~~~L~~~~~ 279 (359)
.++.++.-++++.+ ++.++..
T Consensus 95 ~~~vvsNlPy~i~~~----il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISSP----LIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHHH----HHHHHhc
Confidence 34444444445433 4555443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.3e-06 Score=73.97 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCC-c
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFV-D 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~-~ 267 (359)
+....++|+|||.|.++.. +|.+..++.|+.. .+..++..+.......|+.. +.+ .||..+...++||+. .
T Consensus 44 ~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3478999999999987753 5888999999965 77777765554778888866 443 499999999999986 5
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
....++++++.+.++| ||..+|.-.
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvw 144 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEe
Confidence 5667899999999999 888776543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.5e-06 Score=73.03 Aligned_cols=105 Identities=12% Similarity=0.159 Sum_probs=74.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCC---CCCCccEEEEc-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ---SIPPADAFFFK- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~---~~p~~D~i~~~- 259 (359)
..+..+|||+|||+|..+..+++..+ ...++++|++. +++.+++ ..++++...|... ..+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 34568999999999999999988764 35899999954 7765542 3468888888743 12359999852
Q ss_pred -----chhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 -----AIFH-------AFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 -----~vl~-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++. .+.+++ ..++|+++.+.|+| ||.++........
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~~ 204 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 1121 122222 24699999999999 8988877665543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.8e-06 Score=75.64 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=57.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCceEeeCCCCC-CCCCc--c
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMFQ-SIPPA--D 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~~-~~p~~--D 254 (359)
..+++.+. ..+..+|||||||+|.++..++++.+ +++++|++ .+++.+++ .++++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34555555 55678999999999999999999965 79999995 48877653 3689999999965 33433 5
Q ss_pred EEEEcchhccCC
Q 018205 255 AFFFKAIFHAFV 266 (359)
Q Consensus 255 ~i~~~~vl~~~~ 266 (359)
.|+++ .=++.+
T Consensus 108 ~vv~N-lPY~is 118 (272)
T PRK00274 108 KVVAN-LPYNIT 118 (272)
T ss_pred eEEEe-CCccch
Confidence 55543 333343
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.7e-06 Score=71.42 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCCC-------CCCceEee-CCCCC---C--CCCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVPD-------TDNLKFIA-GDMFQ---S--IPPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~-~d~~~---~--~p~~D~i 256 (359)
.+++++|||||.+.|.-+..++...| +.++|.+|+ ++..+.|++ .++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999999998 789999999 558887772 56688888 57754 2 2359999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
|+- ......+.++..+.++|+| |.++++|.+....
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 973 3334557799999999999 5577777666554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=76.72 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=75.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~ 259 (359)
..++.+|||+|||+|..+..+++.. ++.+++++|++. +++.+++ ..++++..+|... + .+ .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4566899999999999999999876 457999999954 7776652 2458899999843 1 12 49999862
Q ss_pred ------chhcc-------CCch-------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 260 ------AIFHA-------FVDE-------DCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 260 ------~vl~~-------~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.++.. ++.+ ...++|.++.+.|+| ||.++.........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~e 372 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTKE 372 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCChh
Confidence 22221 1111 125689999999999 88887777665433
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.14 E-value=9e-06 Score=73.14 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCC----CCCc--eEeeCCCC---CCCCCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPD----TDNL--KFIAGDMF---QSIPPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~----~~~v--~~~~~d~~---~~~p~~D~i~~~~vl 262 (359)
.+.+|||+|+|.|..+..+.+.++.. +++++|.+. +++.++. .... .....++. .+++..|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46899999999999988888888744 799999965 7776551 1111 11111221 234457999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
-.+++.....+++++.+.+. +.|+|+|+..+.+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 99988778888999888875 4899999776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-06 Score=74.34 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCCC-ccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIPP-ADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p~-~D~i~~~~vl~~ 264 (359)
..+.|||||||+|.++...+++. ..++.+++-++|.+.|+. .+||.++.|-+.+ ++|+ +|+|++--+-+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 35789999999999998888774 348999999999988872 6899999999966 6785 999997554444
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+-++...+---..++.|+| .|.++=
T Consensus 256 L~NERMLEsYl~Ark~l~P---~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKP---NGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcCC---CCcccC
Confidence 4455544555567799999 787653
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.1e-06 Score=74.12 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=74.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPA 253 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~ 253 (359)
..++++|||||+++|..+..++...| +.+++.+|.. +..+.|++ .++++++.+|..+. + ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34689999999999999999998765 6689999994 46666652 56899999998542 1 259
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+|++-. ........+..+.+.|+| || ++++|.+...
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GG-vIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GG-VIVMDNVLWH 232 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---Cc-EEEEecCccC
Confidence 9998732 345567899999999999 55 5555655443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-06 Score=75.24 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=63.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~ 252 (359)
..+++... ..+..+|||||||+|.++..+++.. .+++++|++. +++.+++ .++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34555555 5567899999999999999999874 5799999954 7776652 4689999999976 5567
Q ss_pred ccEEEEcchhccCCchHHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKIL 274 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L 274 (359)
+|+|++ +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 898775 444445544333333
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.8e-06 Score=71.22 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC---------------CCCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP---------------DTDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---------------~~~~v~~~~~d 245 (359)
..+++.+. +.+...++|+|||.|......+...+--+++|+++ +...+.|+ ...++++..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 35666666 67789999999999999988887775556999999 33443332 25678899999
Q ss_pred CCCC------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 246 MFQS------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 246 ~~~~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|.+. +.++|+|++++.. |+++ ...-|.+....||+ |.+|+-.
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~ 157 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIIST 157 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEES
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEEC
Confidence 9762 2358999999886 4444 44556777778888 5555443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=62.20 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCeEEEeCCCcch-HHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCC----CccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGS-FARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIP----PADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p----~~D~i~~~~vl~~~~~ 267 (359)
+..+|+|||||+|. ++..|++. +..++++|+++ .++.+++ ..+.++..|++++-+ ++|+|.+.+ +.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 45789999999996 78888765 67999999954 7776653 357999999988543 499998755 34
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++...-+.++.+.+. .-++|....
T Consensus 88 ~el~~~~~~la~~~~-----~~~~i~~l~ 111 (134)
T PRK04148 88 RDLQPFILELAKKIN-----VPLIIKPLS 111 (134)
T ss_pred HHHHHHHHHHHHHcC-----CCEEEEcCC
Confidence 555555555555553 456554433
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-06 Score=73.45 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC----------CCCceEeeCCCCC---CCC-CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD----------TDNLKFIAGDMFQ---SIP-PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~~p-~~D~i~ 257 (359)
+.+++||-||+|.|.+++.+++..+-.+++.+|+ +.+++.+++ .+|++++..|..+ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999888889999999 558887762 4899999999855 234 599999
Q ss_pred EcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+-..=. .... -...+++.|+++|++ +|.++..
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 754332 1110 124699999999999 7766664
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.2e-06 Score=67.01 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=61.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCCCCCCCccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~ 267 (359)
..++|+|+|||||.++...+-..| .+++++|+ |+.++.+++ ..++.|+..|+.+.-..+|.++++=-+--+..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 467899999999999998877654 38999999 668887763 45799999999443445898887644433321
Q ss_pred hHHHHHHHHHHHh
Q 018205 268 EDCLKILKRCREA 280 (359)
Q Consensus 268 ~~~~~~L~~~~~~ 280 (359)
..-..+|.+..++
T Consensus 124 haDr~Fl~~Ale~ 136 (198)
T COG2263 124 HADRPFLLKALEI 136 (198)
T ss_pred cCCHHHHHHHHHh
Confidence 1123466666555
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.6e-06 Score=74.74 Aligned_cols=94 Identities=16% Similarity=0.187 Sum_probs=69.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+.+.|||||||+|-++...+++. -.+++++|-+++.+.|.+ .+.|++..+.+.+ .+| .+|+|++-++=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999999986 458999999887776662 5668999998855 444 699999876655
Q ss_pred cCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 018205 264 AFV-DEDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
.+- +.....+|-.=-+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 432 22233344444588998 77654
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.5e-06 Score=74.74 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=70.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC----------CCCceEeeCCCCCC---C-CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD----------TDNLKFIAGDMFQS---I-PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~~---~-p~~D~i~ 257 (359)
+.+.+||.||+|.|..+..+++..+..+++++|+ +.+++.|++ .+|++++.+|.+.. . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999988666678999999 558887762 47999999998552 2 2499999
Q ss_pred EcchhccCCc--h---HHHHHHH-HHHHhcccCCCCcEEEE
Q 018205 258 FKAIFHAFVD--E---DCLKILK-RCREAIASRGDRGKVII 292 (359)
Q Consensus 258 ~~~vl~~~~~--~---~~~~~L~-~~~~~L~p~~~gG~lli 292 (359)
+-. ...+.. . -...+++ .+++.|+| ||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 752 111100 0 0235787 89999999 776554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=82.18 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------C-CCceEeeCCCCCC---CC-CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------T-DNLKFIAGDMFQS---IP-PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~-~~v~~~~~d~~~~---~p-~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..++... ..+++++|++. +++.|++ . ++++++++|+++. .+ .||+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999862 34799999965 8887762 2 4799999998652 22 599999841
Q ss_pred hh--------ccC-CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 261 IF--------HAF-VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 261 vl--------~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
=- ..+ .......+++.+.++|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 10 000 012345689999999999 8877664
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=68.04 Aligned_cols=96 Identities=13% Similarity=0.223 Sum_probs=63.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC---C-CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI---P-PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~---p-~~D~i~~~~vl 262 (359)
...+|||+|||+|.++..++.+. ..+++++|.. .+++.++. ..+++++.+|+++.+ . .||+|++.=-+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998765554 3589999994 46665552 347899999985522 1 39999986443
Q ss_pred ccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 018205 263 HAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~ 297 (359)
+. .-...+++.+.+ +|+| ++ +++++...
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~---~~-iv~ve~~~ 161 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD---EA-LIYVESEV 161 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC---Cc-EEEEEecC
Confidence 21 122345555554 3677 45 55555443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=73.30 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------C--CCceEeeCCCCCCC-------CCccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------T--DNLKFIAGDMFQSI-------PPADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~--~~v~~~~~d~~~~~-------p~~D~i~ 257 (359)
+..+|||+|||+|.++...+.. ...+++++|++. +++.|++ . ++++++.+|+++.. ..||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999998876643 345899999965 8777662 1 47899999996521 2499999
Q ss_pred EcchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 258 FKAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 258 ~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+.--...-+. .....+++.+.++|+| ||.++.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 7622110111 1234567778899999 888887663
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.4e-05 Score=66.25 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=69.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC------CCCCceEeeCCCCC---C-CC--CccEEEEcchh
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP------DTDNLKFIAGDMFQ---S-IP--PADAFFFKAIF 262 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~------~~~~v~~~~~d~~~---~-~p--~~D~i~~~~vl 262 (359)
..+||||||.|.++..+|+++|+..++|+|+. ..+..|- .-+++.++++|... . ++ +.|-|.+++-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 58999999999999999999999999999993 3443332 23389999999843 2 22 36666654321
Q ss_pred ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDED-------CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.|+... ...+|+.+.+.|+| ||.|.+.+-
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aTD 165 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFATD 165 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEec
Confidence 232111 24689999999999 899988663
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=68.21 Aligned_cols=73 Identities=25% Similarity=0.525 Sum_probs=60.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~p~ 252 (359)
+.++.+-+ ..+...|||||.|||.++..++++ +.+|+++++ |.|+.... ...+++++.+|++. ++|.
T Consensus 48 ~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 48 DQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 56666666 778899999999999999999999 667999999 55665543 25789999999987 7898
Q ss_pred ccEEEE
Q 018205 253 ADAFFF 258 (359)
Q Consensus 253 ~D~i~~ 258 (359)
||+++.
T Consensus 124 fd~cVs 129 (315)
T KOG0820|consen 124 FDGCVS 129 (315)
T ss_pred cceeec
Confidence 998886
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.7e-05 Score=62.87 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=89.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeec-ccccccCCC--------CCCceEeeCCCCC---CCC--CccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDL-PHVVPKVPD--------TDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
.+...+|||...|-|.+++..+++ ++ .++-++- |.+++.|.- ..+++++.||..+ .++ +||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 356799999999999999999988 55 7888888 669988872 3478999999965 344 39988
Q ss_pred EE-----cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 257 FF-----KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 257 ~~-----~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
+- +..=+- -..++-++++++|+| ||+++-.... .... +.... -....
T Consensus 210 iHDPPRfS~AgeL----YseefY~El~RiLkr---gGrlFHYvG~--Pg~r---------yrG~d----------~~~gV 261 (287)
T COG2521 210 IHDPPRFSLAGEL----YSEEFYRELYRILKR---GGRLFHYVGN--PGKR---------YRGLD----------LPKGV 261 (287)
T ss_pred eeCCCccchhhhH----hHHHHHHHHHHHcCc---CCcEEEEeCC--CCcc---------cccCC----------hhHHH
Confidence 72 222222 235689999999999 8998754322 1110 11111 24668
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.|+++||..++...-
T Consensus 262 a~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 262 AERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHhcCceeeeeehh
Confidence 89999999997766544
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.6e-05 Score=68.70 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCC---C-------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQS---I-------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~---~-------p~~ 253 (359)
.++.+|||||+++|.-+..+++.. ++.+++.+|. ++..+.|+ -.++|+++.+|..+. + ..|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 357899999999999999999876 4779999999 44666665 258999999988541 1 359
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+|++-. ........+..+.+.|+| |.++|+|.+...
T Consensus 158 D~iFiDa-----dK~~Y~~y~~~~l~ll~~----GGviv~DNvl~~ 194 (247)
T PLN02589 158 DFIFVDA-----DKDNYINYHKRLIDLVKV----GGVIGYDNTLWN 194 (247)
T ss_pred cEEEecC-----CHHHhHHHHHHHHHhcCC----CeEEEEcCCCCC
Confidence 9999743 234456788899999999 456666766544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.1e-05 Score=67.24 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=66.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCCC-CCccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQSI-PPADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~~-p~~D~i~~~~ 260 (359)
+.+++||=||||.|..++.+++. |. +++.+|+.+ +++.+++ .+|++++.. +.+.. ..||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56799999999999999999985 44 999999954 8877663 688888862 32222 3599999754
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
. + + ..+.+.++++|+| ||.++.
T Consensus 148 ~---~--~--~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 148 E---P--D--IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred C---C--C--hHHHHHHHHhcCC---CcEEEE
Confidence 3 1 2 3588999999999 776665
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.7e-05 Score=70.21 Aligned_cols=99 Identities=18% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC----------CCCceEeeCCCCC---C-CC-CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD----------TDNLKFIAGDMFQ---S-IP-PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~d~~~---~-~p-~~D~i 256 (359)
+.+.+||-||+|.|..+..+++..+-.+++++|+ +.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3679999999999999999987665679999999 458887762 5799999999843 2 33 59999
Q ss_pred EEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.-..-...+... ...+++.+++.|+| +|.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 9733221111111 24699999999999 77666644
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=65.50 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=70.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeec-ccccccCC----------------CCCCceEee
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDL-PHVVPKVP----------------DTDNLKFIA 243 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~ 243 (359)
.+++.+...+.+..++||||+|+|.++..++.-. ++...+|+|. |+.++.++ +..++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 3344444345677899999999999998887543 4445589998 77776554 156889999
Q ss_pred CCCCCC---CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 244 GDMFQS---IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 244 ~d~~~~---~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+|...- ...||.|.+.-.- .++.+++...|++ ||+++|
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~---gGrlli 191 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKP---GGRLLI 191 (237)
T ss_pred CCccccCCccCCcceEEEccCc--------cccHHHHHHhhcc---CCeEEE
Confidence 998652 3359999987332 3356667777888 888888
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.9e-06 Score=70.52 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=88.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCC-CCCCCCCccEEEEcchhccCCchHH
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGD-MFQSIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d-~~~~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
..+.++||+|+|.|..+...+..+.. +.+.+++. |....+. .+..+.... -.+.--++|+|.|.++|...-++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 34689999999999999888766543 77778876 6555442 122222211 11111149999999999887555
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC--HHHHHHHHHHcCCceeEEEEe
Q 018205 271 LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT--EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 271 ~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t--~~~~~~ll~~aGf~~~~~~~~ 348 (359)
-++|+.++.+|.|. .|++++.=.. +...--. ...........-....+|+.+. ...+.++|+.|||.+...+..
T Consensus 186 ~kLL~Di~~vl~ps--ngrvivaLVL-P~~hYVE-~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAPS--NGRVIVALVL-PYMHYVE-TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhccC--CCcEEEEEEe-cccceee-cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 56999999999992 6777764322 2111000 0000000000011123444332 345789999999999888776
Q ss_pred C
Q 018205 349 Y 349 (359)
Q Consensus 349 ~ 349 (359)
+
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.2e-05 Score=70.41 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=50.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---C-CCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---I-PPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~-p~~D~i~~~ 259 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ ..+++++.+|+.+. . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3589999999999999999985 56899999954 8877762 35789999998541 2 248999975
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00045 Score=61.30 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=93.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cc-------cc---CC----------------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VV-------PK---VP---------------------------- 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~-------~~---a~---------------------------- 234 (359)
...+||-=|||.|.++-.++.. +..+.+.|.+- |+ .. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 66788888865 42 11 11
Q ss_pred --------CCCCceEeeCCCCC--CCC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 235 --------DTDNLKFIAGDMFQ--SIP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 235 --------~~~~v~~~~~d~~~--~~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
...++....|||.+ ..+ .+|+|+.++.+.-. +.+...|+.|.++||| ||.+|=+.+.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKP---GGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhcc---CCEEEecCCccccC
Confidence 03478889999965 222 49999988776543 4567899999999999 77544444333222
Q ss_pred CcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 301 KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
.. .. ......-++|.+|+..+.+..||++++...
T Consensus 209 ~~------------~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EP------------MS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC------------CC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 00 000112467999999999999999877665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0012 Score=60.24 Aligned_cols=96 Identities=15% Similarity=0.225 Sum_probs=72.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC---CccEEEEcchhccCCch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP---PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~D~i~~~~vl~~~~~~ 268 (359)
+.+..++||+||++|.++..++++ +.+|+++|...+-......++|+...+|.+...| .+|+++|-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H
Confidence 356789999999999999999998 6799999987666666678999999999876433 389999866632 2
Q ss_pred HHHHHHHHHHHhcccCCCC-cEEEEEeeecC
Q 018205 269 DCLKILKRCREAIASRGDR-GKVIIIDIVIN 298 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~g-G~lli~~~~~~ 298 (359)
.++++-+.++|.. | .+-.|+..-++
T Consensus 283 --~rva~lm~~Wl~~---g~cr~aIfnLKlp 308 (357)
T PRK11760 283 --ARVAELMAQWLVN---GWCREAIFNLKLP 308 (357)
T ss_pred --HHHHHHHHHHHhc---CcccEEEEEEEcC
Confidence 3477888888876 2 33455554443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=62.70 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=84.5
Q ss_pred EEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCCCCCCC--C-ccEEEEcchhccCC
Q 018205 198 LVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQSIP--P-ADAFFFKAIFHAFV 266 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~~p--~-~D~i~~~~vl~~~~ 266 (359)
|+||||.+|.+...|+++..--++++.|+. ..++.|+ ..+++++..+|-++.++ + .|+|++..+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG---- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG---- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC----
Confidence 689999999999999999876689999994 4777666 26789999999877544 3 8888876653
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~ 346 (359)
-....++|.+....++. ...+++ .+. .....++++|.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 34566788888777765 344444 211 134568899999999987765
Q ss_pred Ee---CCceeEEEEe
Q 018205 347 PV---YGIKSLIEVY 358 (359)
Q Consensus 347 ~~---~~~~~vi~~~ 358 (359)
-+ +-++.+|.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 54 3456677664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=70.37 Aligned_cols=90 Identities=19% Similarity=0.298 Sum_probs=62.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC-----C-C-CccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS-----I-P-PADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~-----~-p-~~D~i~ 257 (359)
..+..+|||+|||+|.++..+++.. .+++++|++ .+++.|+. ..+++++.+|+.+. . . .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556899999999999999999874 479999995 48877762 35799999998431 1 1 389988
Q ss_pred EcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 018205 258 FKAIFHAFVDED-CLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 258 ~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.- +... ...+++.+.+ ++| ++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence 632 1111 1346666554 777 565554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00057 Score=56.02 Aligned_cols=121 Identities=15% Similarity=0.331 Sum_probs=80.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC-----CCCCceEeeCCCCCCC--CCccEEEEcchhcc-
Q 018205 195 LGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP-----DTDNLKFIAGDMFQSI--PPADAFFFKAIFHA- 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~~~~~--p~~D~i~~~~vl~~- 264 (359)
+.-++|||||+|..+..|++.. |+.-+...|+ |+.++... ..-++..+..|+...+ .+.|+++++--.--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999888864 7788999999 55555432 2445678888886532 35888776532211
Q ss_pred -------------CC-----chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCccc
Q 018205 265 -------------FV-----DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326 (359)
Q Consensus 265 -------------~~-----~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
|. .+-..++|.++-.+|.| .|.+++.-...+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N---------------------------- 172 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRAN---------------------------- 172 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhc----------------------------
Confidence 11 12234677777788888 788777543322
Q ss_pred CHHHHHHHHHHcCCceeEEE
Q 018205 327 TEKEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~ 346 (359)
..+++-++++.-||......
T Consensus 173 ~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 173 KPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred CHHHHHHHHhhcccceeEEE
Confidence 24556667777787754443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=58.23 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=76.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecccccccCCCCCCceEeeCCCCCC---------CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p 251 (359)
.++.+++. .+++..+|+|+|+..|.++..+++... +.+++++|+-++-.. .+|.++++|++++ ++
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHcC
Confidence 67777774 678899999999999999999888764 456999999665443 3499999999753 12
Q ss_pred C--ccEEEEcch---hccCC-c-----hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 252 P--ADAFFFKAI---FHAFV-D-----EDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 252 ~--~D~i~~~~v---l~~~~-~-----~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
. +|+|++-.. --++. | .-+...+.-+.+.|+| ||.+++-.....+
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg~~ 164 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQGED 164 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeCCC
Confidence 2 699985322 11111 1 2233456777789999 8888776655443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.7e-05 Score=62.87 Aligned_cols=105 Identities=20% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHHHhcccccC--CCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC---------
Q 018205 182 NLIVKDCQPIFQ--GLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS--------- 249 (359)
Q Consensus 182 ~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--------- 249 (359)
.++.+.++ .++ +..++||+||++|.++..++++. +..+++++|+..+-. ...+..+.+|+.++
T Consensus 10 ~ei~~~~~-~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 10 YEIDEKFK-IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHTTS-SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHCC-CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhh
Confidence 45666666 233 45899999999999999999987 667999999955411 13455555555321
Q ss_pred C----CCccEEEEcchhccCC---------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 I----PPADAFFFKAIFHAFV---------DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 ~----p~~D~i~~~~vl~~~~---------~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
. ..+|+|++-.....-. -+-+...|.-+.+.|+| ||.+++--
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 1 2499999765221111 12223445555677899 78766644
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.7e-05 Score=64.35 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=52.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCC----CCCCC----CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDM----FQSIP----PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~----~~~~p----~~D~i 256 (359)
.....|||+|||+|..+..+++..|.+.++++|.+. ++..|. ..+++.++..++ +.+.+ .+|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 445689999999999999999999999999999976 665554 267888886555 33332 38888
Q ss_pred EEc
Q 018205 257 FFK 259 (359)
Q Consensus 257 ~~~ 259 (359)
+++
T Consensus 227 vsN 229 (328)
T KOG2904|consen 227 VSN 229 (328)
T ss_pred ecC
Confidence 875
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.4e-05 Score=62.16 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=67.2
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc----ccccCC---CCCCceEeeCCCCC-CC-CCccEEEEcchhccCCc
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH----VVPKVP---DTDNLKFIAGDMFQ-SI-PPADAFFFKAIFHAFVD 267 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~----~~~~a~---~~~~v~~~~~d~~~-~~-p~~D~i~~~~vl~~~~~ 267 (359)
+++|||+|.|.=++-++-.+|+.+++.+|... .++.+. .-++++++++.+.+ .. ..||+|++.-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 89999999999999999999999999999832 444333 35689999999855 23 3599999987641
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...++.-+...+++ ||.++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 24588888899999 88888754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.5e-05 Score=67.03 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=59.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCCC----CCCceEeeCCCCC--C-C--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVPD----TDNLKFIAGDMFQ--S-I-- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~--~-~-- 250 (359)
+.+++.+. ..+...+||.+||.|.++..+++..| +.+++++|. +++++.|++ .++++++.+|+.+ . .
T Consensus 9 ~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 9 DEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred HHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 67777776 45567999999999999999999986 789999999 558877763 3689999999843 1 1
Q ss_pred --CCccEEEEc
Q 018205 251 --PPADAFFFK 259 (359)
Q Consensus 251 --p~~D~i~~~ 259 (359)
+.+|.|++.
T Consensus 87 ~~~~vDgIl~D 97 (296)
T PRK00050 87 GLGKVDGILLD 97 (296)
T ss_pred CCCccCEEEEC
Confidence 248887753
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=70.38 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC-C-----CCCCceEeeCCCC---CCCC--CccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV-P-----DTDNLKFIAGDMF---QSIP--PADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a-~-----~~~~v~~~~~d~~---~~~p--~~D~i~~~~v 261 (359)
....+||||||.|.++..+++.+|+..++|+|+.. .+..+ + ...++.+++.|+. ..+| ..|-|++++-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46789999999999999999999999999999943 33322 2 2457788888762 2344 3787776543
Q ss_pred hccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFVDE-------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~~~-------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
= .|+.. -...+|+.+.+.|+| ||.+.+.+
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 2 23211 124799999999999 89988855
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=7.1e-05 Score=70.84 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec---c-cccccCCCCCCceEeeCCC---CCCCCC--ccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL---P-HVVPKVPDTDNLKFIAGDM---FQSIPP--ADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~-~~~~~a~~~~~v~~~~~d~---~~~~p~--~D~i~~~~vl~~ 264 (359)
....+||||||+|.++..++++ ++..+.+-+ . ..++.|-+ ..+-.+-+-+ .-++|. ||+|.|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 3467999999999999999988 443333322 1 13333322 1122222222 115564 999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
|...+- .+|-++.++|+| ||.++...+...
T Consensus 194 W~~~~g-~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPNDG-FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred chhccc-ceeehhhhhhcc---CceEEecCCccc
Confidence 976543 489999999999 888877766555
|
; GO: 0008168 methyltransferase activity |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=59.54 Aligned_cols=98 Identities=17% Similarity=0.364 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC----CeEEEeeccc-cccc-CC----CCCC--ceEeeCCCCC---CCCC---cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG----IKCTVLDLPH-VVPK-VP----DTDN--LKFIAGDMFQ---SIPP---AD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~-~~~~-a~----~~~~--v~~~~~d~~~---~~p~---~D 254 (359)
.+..+++|+|+|+..-+..|...+.. ++++-+|++. +++. |+ +.+. +.-+++|+.. ..|. -=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999988888777755 6899999976 4432 22 3444 4555677733 3443 22
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.++....|-+++++++..+|.++..+|+| |-.+++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEe
Confidence 45677889999999999999999999999 7777763
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00026 Score=62.34 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=58.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p~--- 252 (359)
+.+++..+ ..+..+|+|||+|.|.++..|+++. .+++++++.. +++..+ ..++++++.+|++. +++.
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 45666665 5557899999999999999999994 4588888844 555443 36899999999977 5663
Q ss_pred ccEEEEcchhccCCch
Q 018205 253 ADAFFFKAIFHAFVDE 268 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~ 268 (359)
++.|+. |.=++++-+
T Consensus 96 ~~~vVa-NlPY~Issp 110 (259)
T COG0030 96 PYKVVA-NLPYNISSP 110 (259)
T ss_pred CCEEEE-cCCCcccHH
Confidence 455543 444455444
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00014 Score=61.76 Aligned_cols=96 Identities=10% Similarity=0.190 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C---C-CccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I---P-PADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~---p-~~D~i~~ 258 (359)
...+|||++||+|.++..++.+.. .+++++|.+. +++.+++ .++++++.+|.++. . . .+|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 368999999999999999999864 3899999954 6655541 34789999998441 1 1 2677776
Q ss_pred cchhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 018205 259 KAIFHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~ 297 (359)
-=-+.. .....+++.+.+ +|++ +.++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 332211 122334554443 5666 5577777554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.5e-05 Score=67.19 Aligned_cols=148 Identities=11% Similarity=0.129 Sum_probs=85.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccC-------C--------------C---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKV-------P--------------D--- 235 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a-------~--------------~--- 235 (359)
+.+.+.+....-+..++||||||.-.+-..-+. +.. +++..|..+ -.+.. . +
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~--~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSAC--EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGG--GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHH--HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 344444432222457999999999655332222 222 588888733 22111 1 0
Q ss_pred ----------CCCc-eEeeCCCCCC--------CCC-ccEEEEcchhccCC--chHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 236 ----------TDNL-KFIAGDMFQS--------IPP-ADAFFFKAIFHAFV--DEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 236 ----------~~~v-~~~~~d~~~~--------~p~-~D~i~~~~vl~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
...| .++..|.+++ .|. ||+|++..+|.... .++....++++.++||| ||.++++
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~ 198 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILA 198 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 1123 3666787552 233 99999999998754 55678899999999999 8999988
Q ss_pred eeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 294 DIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
.......-. .+-. ....-..+.+.+++.|+++||.+.+...
T Consensus 199 ~~l~~t~Y~----------vG~~---~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 199 GVLGSTYYM----------VGGH---KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EESS-SEEE----------ETTE---EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EEcCceeEE----------ECCE---ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 765432100 0000 0111235899999999999999988875
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=65.30 Aligned_cols=102 Identities=21% Similarity=0.403 Sum_probs=68.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCC-eEEEeecccccccCC-------CCCCceEeeCCCCC---CCCCccEEEEcchhc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQ---SIPPADAFFFKAIFH 263 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~---~~p~~D~i~~~~vl~ 263 (359)
+.+|||||.|.|.-+.++-..+|++ +++.++.+..+...- ......+...|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 5679999999999988888888987 467777654433221 12223344445432 566666666555554
Q ss_pred cC----CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 264 AF----VDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 264 ~~----~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.+ ....+...++++..++.| ||.++|+|...+-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp~ 230 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTPA 230 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCch
Confidence 43 333444589999999999 9999999976543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00013 Score=60.74 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=66.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------------CCCCceEeeCCCCCCCCC-ccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------------DTDNLKFIAGDMFQSIPP-ADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------------~~~~v~~~~~d~~~~~p~-~D~i~~ 258 (359)
....+.|||||.|.++..|+..+|+.-+.|.++.. +.+..+ ...++.+...+.+.-.|. |.--.+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 44679999999999999999999999999999833 443222 145667776666544443 222222
Q ss_pred cchhccCCchH-----------HHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 259 KAIFHAFVDED-----------CLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 259 ~~vl~~~~~~~-----------~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
+-.++.++|+- ...++.+..-+|++ ||.++.+.-+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 23333333332 13577788888998 89888877554
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0036 Score=55.83 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=87.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc--------ccccC---------------------------------
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH--------VVPKV--------------------------------- 233 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~--------~~~~a--------------------------------- 233 (359)
..+||-=|||.|.++..|+...+.+++- +.+- ++...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 5789999999999999999987765431 2211 01000
Q ss_pred ------CCCCCceEeeCCCCCC--CC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 234 ------PDTDNLKFIAGDMFQS--IP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 234 ------~~~~~v~~~~~d~~~~--~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
...+..+...|||.+- .+ .+|+|+.++.+.-- ..+...|+.|+++|+| ||.++=+.+......
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~ 303 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKP---GGVWINLGPLLYHFE 303 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccC---CcEEEeccceeeecc
Confidence 0124456678999762 22 39999988666433 4567899999999999 776665555443222
Q ss_pred cchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 302 EDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
... +. ....+-+++.+++..+...-||++++-..+
T Consensus 304 d~~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 304 DTH---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred CCC---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 110 00 001134679999999999999998877644
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.41 E-value=6.4e-05 Score=49.26 Aligned_cols=46 Identities=28% Similarity=0.557 Sum_probs=39.9
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 4567788776678899999999999 789999999999999999875
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0004 Score=65.47 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCC----CCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSI----PPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~----p~~D~i~~~~vl 262 (359)
+..+|||+|||+|.++..++.. ..+++++|++ .+++.|+. .+++++..+|+.+.. ..||+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3479999999999999999865 5689999994 47776662 347899999984421 248998874221
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
- .-...+++.+.+ ++| ++.+++
T Consensus 311 ~----G~~~~~l~~l~~-~~p---~~ivyv 332 (374)
T TIGR02085 311 R----GIGKELCDYLSQ-MAP---KFILYS 332 (374)
T ss_pred C----CCcHHHHHHHHh-cCC---CeEEEE
Confidence 1 111345555543 677 454444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00031 Score=60.19 Aligned_cols=120 Identities=21% Similarity=0.229 Sum_probs=83.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-c---ccccCC---CCCCceEeeCCCCCC--CCC-ccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-H---VVPKVP---DTDNLKFIAGDMFQS--IPP-ADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~---~~~~a~---~~~~v~~~~~d~~~~--~p~-~D~i~~~~vl~~ 264 (359)
..+++|||+|.|.=+.-++-.+|+.+++.+|.- . .++.+. ..++++++++.+.+- .+. ||+|++.-+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 689999999999999999988999999999972 2 444444 367799999988442 234 99999877642
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
...++.-+...+++ ||.++..-... ..+ -..+.+......|+...+
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~~--------------~~~------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGLA--------------GKD------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHHh--------------hhh------------hHHHHHHHHHhhcCcEEE
Confidence 23477777788888 77665411000 000 234556666777888888
Q ss_pred EEEeC
Q 018205 345 ITPVY 349 (359)
Q Consensus 345 ~~~~~ 349 (359)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 87663
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00092 Score=55.54 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCCCCCCccEEEEcchhccCCc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~ 267 (359)
..++|||+|.|+|..++..++.. -..++..|++. .+..++ ..-.+.+...|..-+-+.+|+++.+.++++-
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~-- 155 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH-- 155 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc--
Confidence 46899999999999999887763 23677777743 333332 2345677778875555579999999999766
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
....++++ +...|..+ |-.++|.++.++.-.
T Consensus 156 ~~a~~l~~-~~~~l~~~--g~~vlvgdp~R~~lp 186 (218)
T COG3897 156 TEADRLIP-WKDRLAEA--GAAVLVGDPGRAYLP 186 (218)
T ss_pred hHHHHHHH-HHHHHHhC--CCEEEEeCCCCCCCc
Confidence 44456888 55555542 778888887776654
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0045 Score=55.26 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=100.4
Q ss_pred HhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---------CCCCceEeeC
Q 018205 174 MASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---------DTDNLKFIAG 244 (359)
Q Consensus 174 m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~v~~~~~ 244 (359)
+...+++....+..+- -.+...||.+|||--.....+.. .++++++-+|.|++++.-+ ...+..++..
T Consensus 63 ~~~Rtr~~D~~i~~~~--~~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~ 139 (260)
T TIGR00027 63 IAVRTRFFDDFLLAAV--AAGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPV 139 (260)
T ss_pred HHHHHHHHHHHHHHHH--hcCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEecc
Confidence 3444444433333332 13456899999999877776632 2367888888888665221 2578899999
Q ss_pred CCCCCC------CCc-----cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh
Q 018205 245 DMFQSI------PPA-----DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313 (359)
Q Consensus 245 d~~~~~------p~~-----D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~ 313 (359)
|+.+.. .+| -++++-.++.+++.+++.++|+.+.+...| |..+++|...+........ ......
T Consensus 140 Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~~~~-~~~~~~ 214 (260)
T TIGR00027 140 DLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEWRAG-MRAPVY 214 (260)
T ss_pred CchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhHHHH-HHHHHH
Confidence 985321 123 377788999999999999999999998877 4556667655421110000 001111
Q ss_pred hhhhhhhcC--CcccCHHHHHHHHHHcCCceeEE
Q 018205 314 DMLMMVAVR--GSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 314 ~~~~~~~~~--g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
......... -...+.+++.++|++.||.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 215 HAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 000000000 11247899999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00059 Score=56.16 Aligned_cols=96 Identities=16% Similarity=0.310 Sum_probs=71.3
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCC-CCCCccEEEEcchhccCCc
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVD 267 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~ 267 (359)
..+.|+|.|+|-++...++. .-++++++. |...+.|.+ ..+++++.+|..+ .+..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 67899999999998877766 447999988 545555553 5789999999976 6767999998544333334
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++...+++.+.+.|+. ++.++=.+..
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHHh
Confidence 5556789999999998 7877755433
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.042 Score=46.14 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=95.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-c----ccccCCCCCCceEeeCCCCCCC------CCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-H----VVPKVPDTDNLKFIAGDMFQSI------PPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~----~~~~a~~~~~v~~~~~d~~~~~------p~~D~i~~~~ 260 (359)
+++.++||=+|+.+|++...++...+.-.+.+++.+ . .+..|++.+++-.+-+|...+. +.+|+|+.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 678999999999999999999998887789999983 2 4455667889999999985442 3588887522
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
. .+.++.-+..++..-|++ +|.+++.--...-..... ... . =.++. +-|++.||
T Consensus 154 A----Qp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~d---p~~-v--------------f~~ev-~kL~~~~f 207 (231)
T COG1889 154 A----QPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTAD---PEE-V--------------FKDEV-EKLEEGGF 207 (231)
T ss_pred C----CchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCC---HHH-H--------------HHHHH-HHHHhcCc
Confidence 1 234555578888999998 776666543333222110 000 0 01233 45688899
Q ss_pred ceeEEEEeCC---ceeEEEEe
Q 018205 341 SHFKITPVYG---IKSLIEVY 358 (359)
Q Consensus 341 ~~~~~~~~~~---~~~vi~~~ 358 (359)
++.++..+.. -+.+|.++
T Consensus 208 ~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 208 EILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred eeeEEeccCCcccceEEEEEe
Confidence 9999988743 35565554
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00024 Score=56.96 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCC---------CCCCceEeeCCCCCC-----CCCccEEEE
Q 018205 195 LGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVP---------DTDNLKFIAGDMFQS-----IPPADAFFF 258 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---------~~~~v~~~~~d~~~~-----~p~~D~i~~ 258 (359)
..+||++|+|. |..+..++..-|..+|...|-.+ .++..+ ...++..+..+.... ...||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999995 66667777778888999999843 554433 234454555555332 224999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
...+.. ++-...+.+.|+..|+| .|+-++..+-+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p---~g~Al~fsPRR 143 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRP---SGRALLFSPRR 143 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCc---ccceeEecCcc
Confidence 988742 34456799999999999 67766655443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00052 Score=54.04 Aligned_cols=68 Identities=16% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCCCCCC--C-ccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMFQSIP--P-ADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~~~p--~-~D~i~~~~vl 262 (359)
.++.+.|+|||.|.++.... .+..-.++|+|+ |+.++.+.. .-++.+++.|+.+..+ + ||..+.+--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 47899999999999984433 233457999999 668887662 3456888899876433 2 8988876554
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00037 Score=47.30 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+|..-.++.|+..|.. ++|.|+.|||+.+|+ +...+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 345556677888888833 279999999999999 6789999999999999999875
|
... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.001 Score=59.57 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=63.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC----CCCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP----DTDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~----~~~~v~~~~~d~~~-~~p~--- 252 (359)
+.+++.++ ..+...|+|||+|.|.++..|++.. .+++++|.. ..++..+ ..++++++.+|+++ +.+.
T Consensus 20 ~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 20 DKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhc
Confidence 45666666 5578999999999999999999986 689999994 3554433 46899999999976 3322
Q ss_pred -ccEEEEcchhccCCchHHHHHHHHHHHhcc
Q 018205 253 -ADAFFFKAIFHAFVDEDCLKILKRCREAIA 282 (359)
Q Consensus 253 -~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~ 282 (359)
-.+.+.++.=++.+ ..++.++...-+
T Consensus 96 ~~~~~vv~NlPy~is----~~il~~ll~~~~ 122 (262)
T PF00398_consen 96 NQPLLVVGNLPYNIS----SPILRKLLELYR 122 (262)
T ss_dssp SSEEEEEEEETGTGH----HHHHHHHHHHGG
T ss_pred CCceEEEEEecccch----HHHHHHHhhccc
Confidence 23444444444343 346666666433
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0014 Score=59.47 Aligned_cols=92 Identities=21% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeec-ccccccCC-------------CCCCceEeeCCCCCCC----CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDL-PHVVPKVP-------------DTDNLKFIAGDMFQSI----PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~-------------~~~~v~~~~~d~~~~~----p~~ 253 (359)
++..+||-+|||.|..++.+.+ +|+ -+++.+|+ |.|++.++ ..+|++++..|.++.. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999876 774 48999999 67998877 2689999999987632 249
Q ss_pred cEEEEcchhccCCchH--------HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 254 DAFFFKAIFHAFVDED--------CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~--------~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|.|+.- ++|+. ..++-.-+++.|++ +|.+++.
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 988852 33322 23567777889998 7776663
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=60.60 Aligned_cols=90 Identities=17% Similarity=0.114 Sum_probs=66.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCCC---CCCccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQS---IPPADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~---~p~~D~i~~~~vl~~ 264 (359)
..+|||++||+|..+..++...+..+++++|+ +..++.++. ..++++..+|.... ...||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999988876568999999 457776652 33466888887431 23599999842 1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..+ ..+++.+.+.+++ +|.+++.
T Consensus 135 -Gs~--~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GSP--APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CCc--HHHHHHHHHHhcC---CCEEEEE
Confidence 222 3488887788888 7888876
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0016 Score=45.15 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=47.0
Q ss_pred HHhcCcchhcccCCC-CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 35 AVELDIPEVIHKHGR-PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 35 a~~lglf~~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
..+-.|+..|...|+ ++|+.|||+.+|+ +...++++|..|...|+++.... .++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~------~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG------TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC------CCCceEeec
Confidence 345567788877544 3999999999999 67899999999999999988642 136677654
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0017 Score=60.95 Aligned_cols=99 Identities=18% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCC--------CCCceEeeCCCCCCC----C---CccEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQSI----P---PADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~~----p---~~D~i 256 (359)
.+++|||+=|=||.++...+.. ++ ++|.+|.+. .++.|++ ..++.++++|.++.+ . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3799999999999999998876 56 899999977 8887772 567899999997632 1 49999
Q ss_pred EEc------chhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 257 FFK------AIFHAFV-DEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 257 ~~~------~vl~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
++- .--.-|. ..+...++..+.++|+| ||.+++.....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecCC
Confidence 952 0000121 23456799999999999 88888766443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00082 Score=57.23 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=58.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCCC--CCccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQSI--PPADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~--p~~D~i~~~~v 261 (359)
..+..+|+|.-||.|.++..+++..+...++++|+ |..++..+ -.+++....+|..+-. ..+|-|++..-
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 34678999999999999999999777888999999 55655443 2577899999995533 24898887542
Q ss_pred hccCCchHHHHHHHHHHHhccc
Q 018205 262 FHAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p 283 (359)
- ....+|..+.+++++
T Consensus 179 ~------~~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE 194 (200)
T ss_dssp S------SGGGGHHHHHHHEEE
T ss_pred H------HHHHHHHHHHHHhcC
Confidence 1 123488999999998
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0087 Score=49.44 Aligned_cols=72 Identities=21% Similarity=0.414 Sum_probs=50.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeC-CCCCC---------CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAG-DMFQS---------IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-d~~~~---------~p 251 (359)
++-+++. .+.+..+|||+||..|.++.-..++. |+-.+.|+|+-..... ..+.++.+ |+.++ .|
T Consensus 59 EindKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~----~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 59 EINDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP----EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred eehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC----CCcccccccccCCHHHHHHHHHhCC
Confidence 4455555 46778999999999999998887776 9999999998442221 33455555 66432 34
Q ss_pred C--ccEEEEc
Q 018205 252 P--ADAFFFK 259 (359)
Q Consensus 252 ~--~D~i~~~ 259 (359)
. +|+|++-
T Consensus 134 ~r~VdvVlSD 143 (232)
T KOG4589|consen 134 NRPVDVVLSD 143 (232)
T ss_pred CCcccEEEec
Confidence 3 7888753
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0017 Score=60.61 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=41.4
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ 248 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~ 248 (359)
.+|||++||+|.++..+++... +++++|.+ ++++.|++ ..+++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 89999995 48877762 3468899998743
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0013 Score=48.40 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=46.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.|...++++|+.|||+.+|+ +...+.|.|+.|+..|++..... ++.|++++.
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-------~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-------NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-------CCceeecHH
Confidence 4566777664368999999999999 68999999999999999988631 467888764
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0069 Score=48.90 Aligned_cols=96 Identities=16% Similarity=0.306 Sum_probs=63.8
Q ss_pred EEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC-C--CC---ceEeeCCCCC---CCC---CccEEEEcchhc
Q 018205 198 LVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD-T--DN---LKFIAGDMFQ---SIP---PADAFFFKAIFH 263 (359)
Q Consensus 198 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~-~--~~---v~~~~~d~~~---~~p---~~D~i~~~~vl~ 263 (359)
++|+|||+|... .+....+. ..++++|.+. ++..+.. . .. +.+..+|... ++. .+|++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 44443333 4788899954 5554331 1 11 5777777643 333 48999 544444
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
++.+ ....+.++.+.++| +|.+++........
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~~ 161 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDGL 161 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCCC
Confidence 4433 46799999999999 88888877765543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.008 Score=50.80 Aligned_cols=102 Identities=18% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-----CCCCceEeeCCC---CCCCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-----DTDNLKFIAGDM---FQSIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-----~~~~v~~~~~d~---~~~~p--~~D~i~~~~vl 262 (359)
+++.+||.||-|-|.....+.++.|..+.+.---|.+.+.-+ +..+|.+..+-- ...+| .||-|..--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 678999999999999999998888876655433366666554 467888888744 33455 39998875443
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.+. ++...+-+.+.++||| +|.+-.+.....+
T Consensus 180 e~y--Edl~~~hqh~~rLLkP---~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKP---EGVFSYFNGLGAD 211 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCC---CceEEEecCcccc
Confidence 444 6677899999999999 8877666554433
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=57.05 Aligned_cols=105 Identities=13% Similarity=0.161 Sum_probs=72.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC-CccEEE--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP-PADAFF-- 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p-~~D~i~-- 257 (359)
..+..+|||+++|.|.-+..++....+ -.+++.|++. -++..+ ...++.+...|... .++ .||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356789999999999999999998754 4899999943 444333 23567777777642 234 399999
Q ss_pred --Ecch---------hccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 258 --FKAI---------FHAFVDEDC-------LKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 258 --~~~v---------l~~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+.. ...|+.+++ .++|..+.+.|+| ||.|+........
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~~~ 247 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTLNR 247 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCCCH
Confidence 5422 222332222 5799999999999 8888776665543
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0026 Score=51.16 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=55.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccCCC---------CCCceEeeCCCCCC--CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKVPD---------TDNLKFIAGDMFQS--IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~---------~~~v~~~~~d~~~~--~p~~D~i 256 (359)
.+..+|+|+|||.|.++..|+.. .++.+++++|.. ..++.+.. ..++++..+++... ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999982 278899999994 45555541 25667777766332 2236677
Q ss_pred EEcchhccCCchHHHHHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCRE 279 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~ 279 (359)
+.-|.--.++ ..+|+.+.+
T Consensus 104 vgLHaCG~Ls----~~~l~~~~~ 122 (141)
T PF13679_consen 104 VGLHACGDLS----DRALRLFIR 122 (141)
T ss_pred EEeecccchH----HHHHHHHHH
Confidence 7544433332 346666665
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0022 Score=49.45 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 27 VSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.+++|.--.++.|+..|... ++.++.||++.+++ .+..+.+.|+.|...|+++..+
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 356677777889999999752 68999999999999 6899999999999999998776
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.001 Score=42.46 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=38.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
++.|...|.+ ++.++.||++.+|+ ++..+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4566777877 89999999999999 78999999999999999864
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0031 Score=56.28 Aligned_cols=96 Identities=17% Similarity=0.346 Sum_probs=55.1
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHC-CCCeEEEeec-ccccccCCC--------CCCceEeeCCCCC---CCCCccEEEEc
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAF-PGIKCTVLDL-PHVVPKVPD--------TDNLKFIAGDMFQ---SIPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~---~~p~~D~i~~~ 259 (359)
.+.+|+=||||. -..++.+++.+ ++..++++|+ ++.++.+++ ..+++|+++|..+ +...||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999996 45666666553 6788999999 446666641 6789999999854 23469999886
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.... ...++..++|.++.+.++| |..|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 6553 3334557899999999999 6766663
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.00046 Score=56.48 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=44.5
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCC---CC--C-ccEEEEc
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQS---IP--P-ADAFFFK 259 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~---~p--~-~D~i~~~ 259 (359)
..|+|+-||.|.-++.+++.++ +++++|+ +..++.|+ -.++|+++.+|+++. +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999854 5999999 44666655 267999999999652 22 2 7999965
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=51.14 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=66.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-----CCCCceEeeCCCCCCCC--CccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-----DTDNLKFIAGDMFQSIP--PADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-----~~~~v~~~~~d~~~~~p--~~D~i~~~~vl~ 263 (359)
.+.+.+|+|||||.-=++.-.....|+..+++.|+. .+++... ...+.++...|.....| .+|+.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 345899999999999888888888888999999994 4666544 35677888889977655 399999999998
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+...+. ..-.++-+.++. -.++|.-+..
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfPtr 211 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFPTR 211 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEES-
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEecccc
Confidence 7754433 344455556653 4566655444
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0029 Score=53.18 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCe---------EEEeecc-cccccCC-------CCCCceEeeCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIK---------CTVLDLP-HVVPKVP-------DTDNLKFIAGD 245 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~~-~~~~~a~-------~~~~v~~~~~d 245 (359)
.++.... +.+...|+|--||+|++++..+...++.. ++|.|+. .+++.|+ -...+.+...|
T Consensus 19 ~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D 96 (179)
T PF01170_consen 19 ALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD 96 (179)
T ss_dssp HHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred HHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence 3444344 45678999999999999998888777766 9999995 4777665 24568899999
Q ss_pred CCC-CC-C-CccEEEEcchhcc-CCc-----hHHHHHHHHHHHhccc
Q 018205 246 MFQ-SI-P-PADAFFFKAIFHA-FVD-----EDCLKILKRCREAIAS 283 (359)
Q Consensus 246 ~~~-~~-p-~~D~i~~~~vl~~-~~~-----~~~~~~L~~~~~~L~p 283 (359)
+.+ +. + .+|+|++.-=.-. ... .-..++++++.+++++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 965 32 2 4899998633211 111 1224567888888886
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.043 Score=45.77 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=84.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCC-----------C--CCCceEeeCCCCC-CCC-CccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVP-----------D--TDNLKFIAGDMFQ-SIP-PADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~-----------~--~~~v~~~~~d~~~-~~p-~~D~ 255 (359)
+++..+|+|+=.|.|.++..++... |.-.++.+=..+....+. + ..+++.+-.+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 6788999999999999999887754 443555543323322211 1 2344444444432 122 3666
Q ss_pred EEEcchhccC-----CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 256 FFFKAIFHAF-----VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 256 i~~~~vl~~~-----~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
++....-|.+ ......++-+.+++.||| ||.++|.|.......+.. ..... ..++...
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~~-----------~ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTITL-----------HRIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhhh-----------cccChHH
Confidence 6653333222 234566799999999999 898888887766544321 11100 1235677
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
..+..+.+||+..--..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 788889999997655444
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0028 Score=56.25 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.+...+.+.|+.|||+++|+ +...+.|+|..|+..|+++++ +++|++.+..
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~ 67 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRV 67 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHH
Confidence 4566777654478999999999999 789999999999999999875 4889998754
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.065 Score=45.72 Aligned_cols=86 Identities=12% Similarity=0.182 Sum_probs=66.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCCCC---CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQSIP---PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~p---~~D~i~~~~vl 262 (359)
...++.||||-++.+...|.+.++...++..|+ +..++.|. ..++++...+|-+..+. .+|+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 445699999999999999999999999999999 44665554 36789999999876542 3898887654
Q ss_pred ccCCchHHHHHHHHHHHhccc
Q 018205 263 HAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p 283 (359)
.-.-...+|.+-.+-|+.
T Consensus 95 ---GG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG 112 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC
Confidence 334566788888888873
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0029 Score=56.03 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=47.5
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...+.++++.|||+++|+ +...++|+|..|++.|+++++.. +++|++++..
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~-------~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE-------DGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEeehHHH
Confidence 4567777763344679999999999 68999999999999999999862 4689998754
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0019 Score=60.54 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=41.1
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ 248 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~ 248 (359)
.+|||++||+|.++..+++.. .+++++|.+. +++.|++ ..+++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999998875 3799999954 8876662 3478899988743
|
|
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0033 Score=56.64 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=47.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|.+.+++.|+.|||+.+|+ ++..+.|+|..|+..|+++++.. .++|++.+..
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-------LGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCeEecCHHH
Confidence 3455566554478999999999999 78999999999999999987642 5889988754
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0035 Score=56.41 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=47.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.+...+++.|+.|||+++|+ ++..+.|+|+.|+..|++.++.. .++|+++...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-------~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-------LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCeEEecHHH
Confidence 4456666654468999999999999 78999999999999999988642 5789988753
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0068 Score=43.88 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|.+|||+++++ ++..++++++.|...|+++..++ ..|.|.+++..+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~G------~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSRG------RGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEETS------TTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecCC------CCCceeecCCHH
Confidence 46999999999999 78999999999999999987652 148899887543
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=50.19 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccC-------CCCCCceEeeCCCCCCC---------CCccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKV-------PDTDNLKFIAGDMFQSI---------PPADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a-------~~~~~v~~~~~d~~~~~---------p~~D~ 255 (359)
++++.+|||.=+|.-+..++...| +-+++.+|++. ..+.+ .....|+++.++..+.+ ..||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 479999999999999999988887 46899999943 44433 34788999999885432 13898
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
+|. .++.+.- .....++.+++++ |.+++++.+...+
T Consensus 153 aFv----DadK~nY-~~y~e~~l~Llr~----GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFV----DADKDNY-SNYYERLLRLLRV----GGVIVVDNVLWPG 188 (237)
T ss_pred EEE----ccchHHH-HHHHHHHHhhccc----ccEEEEeccccCC
Confidence 884 4454443 3789999999999 5566777655443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.058 Score=46.61 Aligned_cols=149 Identities=11% Similarity=0.134 Sum_probs=93.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc--ccccCCCCCCceEeeC-CCCC----CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH--VVPKVPDTDNLKFIAG-DMFQ----SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~--~~~~a~~~~~v~~~~~-d~~~----~~p-~~ 253 (359)
...++.|+ ...++..+||||+.||.++..++++. -.+++++|... ..-..+..+|+..+.. |+.. .+. ..
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 34556665 33577999999999999999999974 33799999843 4445666778866665 4422 122 36
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE-EeeecCCCCcchHHHHHHHhhhhh-hhhhcCCcccCHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII-IDIVINEKKEDAQLTEAKLLYDML-MMVAVRGSERTEKEW 331 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~~~ 331 (359)
|+++|--.|- ....+|-.+...+++ ++.++. +-+.+...... ..-. ...-......-..++
T Consensus 146 d~~v~DvSFI-----SL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i 208 (245)
T COG1189 146 DLIVIDVSFI-----SLKLILPALLLLLKD---GGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKI 208 (245)
T ss_pred CeEEEEeehh-----hHHHHHHHHHHhcCC---CceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHH
Confidence 7888755542 235689999999998 554443 44333322110 0000 000001123356788
Q ss_pred HHHHHHcCCceeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~ 349 (359)
.+++.+.||++..+...+
T Consensus 209 ~~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 209 ENFAKELGFQVKGLIKSP 226 (245)
T ss_pred HHHHhhcCcEEeeeEccC
Confidence 899999999998887663
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.014 Score=50.01 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=85.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCC------CCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQS------IPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~------~p~~D~i~~~ 259 (359)
+.+..+||-+|.++|.+...++..- |+-.+.+++.+. .+..|+...+|-.+-.|...| .+.+|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6778999999999999999999875 467899999843 445666788999999998653 2348988863
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCc-chHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHc
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE-DAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDA 338 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~a 338 (359)
-. ..++..-++.++...||+ ||.+++.--...-... ++ . ..+ .++ .+.|++.
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p---~--~vf--------------~~e-~~~L~~~ 203 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKP---GGHLIISIKARSIDSTADP---E--EVF--------------AEE-VKKLKEE 203 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH---H--HHH--------------HHH-HHHHHCT
T ss_pred CC----ChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH---H--HHH--------------HHH-HHHHHHc
Confidence 32 234556688899999999 8888875432211110 00 0 000 122 3556788
Q ss_pred CCceeEEEEeCC
Q 018205 339 GFSHFKITPVYG 350 (359)
Q Consensus 339 Gf~~~~~~~~~~ 350 (359)
||++.+...+..
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999999988843
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.03 Score=50.87 Aligned_cols=147 Identities=17% Similarity=0.237 Sum_probs=92.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecccccccCC----C-----CCCceEeeCCCCC-CCC------Ccc--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPHVVPKVP----D-----TDNLKFIAGDMFQ-SIP------PAD-- 254 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~----~-----~~~v~~~~~d~~~-~~p------~~D-- 254 (359)
+...||-+|||--.-+-.+- .| ++++.-+|.|++++.=+ + ..++++++.|+++ +.+ +||
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36889999998765444432 33 57888899999776322 2 3489999999984 433 355
Q ss_pred ---EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCCcch-HHHHHHHhhhhhhh-hhcCCcccCH
Q 018205 255 ---AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV-INEKKEDA-QLTEAKLLYDMLMM-VAVRGSERTE 328 (359)
Q Consensus 255 ---~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~t~ 328 (359)
++++-.++.+++.+...++|..|...+.| |..++.+.. ........ .............. ...-......
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~----gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 245 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP----GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDP 245 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC----CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCH
Confidence 68888999999999999999999999998 555555553 11111000 00000000000000 0000122458
Q ss_pred HHHHHHHHHcCCceeEEE
Q 018205 329 KEWEKLFLDAGFSHFKIT 346 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~ 346 (359)
.++..++.+.||......
T Consensus 246 ~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 246 AEIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHHhcCEEEEecC
Confidence 999999999999987763
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0045 Score=57.64 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=76.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-CCCC--ccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-SIPP--ADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~~p~--~D~i~~~~vl 262 (359)
+...++|+|||.|.....+.. +..+.++++|... -+..+. ..+...++..|+.. ++++ ||.+-+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 445899999999999988766 4567899999843 333332 24555668889866 4553 9999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.|.++. ..++++++++++| ||..++.+.+...
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTA 220 (364)
T ss_pred ccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhh
Confidence 999877 4599999999999 8888887766543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0034 Score=50.45 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=40.5
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCC
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMF 247 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~ 247 (359)
+++|||||.|.++..+++.+|+.+++++|+ |.+.+.++. ..+++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999999999999999999 556665442 245777776664
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.011 Score=54.22 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=64.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH-------CCCCeEEEeecc-cccccCC--------CCCCceEeeCCCCCC--CC--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA-------FPGIKCTVLDLP-HVVPKVP--------DTDNLKFIAGDMFQS--IP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~~-~~~~~a~--------~~~~v~~~~~d~~~~--~p-- 251 (359)
.....+|+|-.||+|.++..+.+. .+..+++|+|+. .++..|+ ......+..+|.+.. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999888774 367899999994 4555443 133345888888652 22
Q ss_pred -CccEEEEcc--hhccC------------------CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKA--IFHAF------------------VDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~--vl~~~------------------~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+++- ....| ...+ ..++.++.+.|++ +|++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhccc---ccceeEEe
Confidence 499999752 22201 1112 2488999999999 89877654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.015 Score=57.52 Aligned_cols=66 Identities=9% Similarity=0.119 Sum_probs=45.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC--------CeEEEeeccc-ccccCCC------CCCceEeeCCCCCC--------C
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG--------IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS--------I 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~--------~ 250 (359)
...+|+|.|||+|.++..+++..+. ..++++|+.. .+..++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887642 5689999944 6554431 12455666665321 2
Q ss_pred CCccEEEEc
Q 018205 251 PPADAFFFK 259 (359)
Q Consensus 251 p~~D~i~~~ 259 (359)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999975
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.031 Score=57.28 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC----C--------------------------------------CCeEEEeecc-cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF----P--------------------------------------GIKCTVLDLP-HV 229 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~----p--------------------------------------~~~~~~~D~~-~~ 229 (359)
.+...++|-+||+|++++..+... | ..+++|+|+. .+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 346899999999999998876531 1 2368999994 58
Q ss_pred cccCCC-------CCCceEeeCCCCC-CCC----CccEEEEcchh-ccCC-chHHHHHHHHHHHhcc---cCCCCcEEEE
Q 018205 230 VPKVPD-------TDNLKFIAGDMFQ-SIP----PADAFFFKAIF-HAFV-DEDCLKILKRCREAIA---SRGDRGKVII 292 (359)
Q Consensus 230 ~~~a~~-------~~~v~~~~~d~~~-~~p----~~D~i~~~~vl-~~~~-~~~~~~~L~~~~~~L~---p~~~gG~lli 292 (359)
++.|+. .+++.+..+|+.+ +.+ .+|+|+++-=. ..+. ..+...+.+++.+.++ + |+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 887762 4568999999965 222 38999986222 1122 2344445555555554 5 777777
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 664
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.007 Score=45.26 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=42.4
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+..|++.|.. +++.++.+|++.+++ .++.+.+.|+.|...|||....
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK 60 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYK 60 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEE
Confidence 56778888876 347999999999999 7899999999999999999876
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0061 Score=54.61 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=47.8
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.|++.|...+++.|+.||++.+|+ +...+.|+|+.|++.|++++... ++.|++++...
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-------~~~Y~Lg~~~~ 72 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-------DDSFRLTLKVR 72 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-------CCcEEEcHHHH
Confidence 4456666554457999999999999 78999999999999999998742 57899987543
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.03 Score=38.33 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=38.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.++|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~--------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG--------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC--------CCeEEeCC
Confidence 68999999999999 6899999999999999999873 37787764
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0067 Score=54.13 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=45.8
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.|++.|... ++.|+.|||+.+|+ +...+.|+|+.|+..|++++... .++|++.+..
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~-------~~~Y~lG~~~ 73 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE-------SEKYSLTLKL 73 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEEecHHH
Confidence 345555543 58999999999999 78999999999999999998642 5889998754
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.093 Score=46.18 Aligned_cols=117 Identities=17% Similarity=0.299 Sum_probs=78.6
Q ss_pred HHHHHhhcccch-----HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-------
Q 018205 170 YNQAMASDSQLA-----NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------- 235 (359)
Q Consensus 170 ~~~~m~~~~~~~-----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------- 235 (359)
|-.+|...++.. ..++..++ ..+..+||+-|.|+|.++.++++.- |.-+++-+|.-+ -.+.|.+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred hhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 334454444432 45566676 7788999999999999999999875 777899999844 4444432
Q ss_pred CCCceEeeCCCCC-CCC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 236 TDNLKFIAGDMFQ-SIP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 236 ~~~v~~~~~d~~~-~~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+++++...|+-. -++ .+|.|++ +++.+ ...+-.++++|+.. ||++..+.++.
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaP--w~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAP--WEAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEE-----cCCCh--hhhhhhhHHHhhhc--CceEEeccHHH
Confidence 6789999998833 222 3898886 44433 23566677788871 55666655443
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0028 Score=43.97 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=39.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..++..|... ++.|+++||+.+|+ +...+.+.|+-|...|+++...
T Consensus 10 E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 10 EAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 44455555432 79999999999999 7899999999999999999885
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0051 Score=51.79 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCCCCC-------CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQS-------IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~-------~p~~D~i~~ 258 (359)
...++||+=||+|.++...+.+. -.+++.+|.+ ..+...+ ..++++++..|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 47999999999999999988884 3489999994 3555444 245688999996432 124999997
Q ss_pred cchhccCCchH-HHHHHHHHH--HhcccCCCCcEEEEEeeecC
Q 018205 259 KAIFHAFVDED-CLKILKRCR--EAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ~~vl~~~~~~~-~~~~L~~~~--~~L~p~~~gG~lli~~~~~~ 298 (359)
-==. .... ..+++..+. .+|++ +.++|+|....
T Consensus 121 DPPY---~~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY---AKGLYYEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --ST---TSCHHHHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCc---ccchHHHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 4322 1222 356777776 78887 66777777655
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0082 Score=54.05 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCCC------CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQS------IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~------~p~~D~i~~ 258 (359)
..++|||+=|=+|.++...+... -.+++.+|.+. .++.+++ ..++++++.|+++. ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46899999999999999877642 34799999976 8877762 46899999999752 225999995
Q ss_pred c---chhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 259 K---AIFHAFV-DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 259 ~---~vl~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
- +.=..+. ..+..++++.+.++|+| ||.++.+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 2 1100111 23456799999999999 777766553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0061 Score=41.94 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=44.7
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCC--cccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTK--ADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~--~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
|++.|.+.++|++..+|++.+.....+ ++.++|.|++|...|++.+.+ .+.+.+|+.+
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g--------~~G~~iT~~G 62 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG--------RQGRIITEKG 62 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC--------CcccccCHHH
Confidence 456777767899999999999765434 488999999999999887664 3556677654
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0078 Score=54.13 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=70.5
Q ss_pred CCeEEEeCCCcchHHHHHHHHC--------------------CCCeEEEeecc---cccccCC-----------------
Q 018205 195 LGSLVDVGGGTGSFARIISEAF--------------------PGIKCTVLDLP---HVVPKVP----------------- 234 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~~---~~~~~a~----------------- 234 (359)
..+||-||||.|.=..+++..+ +.++++.+|+. .++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999987555555444 23689999992 2553221
Q ss_pred ------CCCCceEeeCCCCCC-C---------CCccEEEEcchhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 235 ------DTDNLKFIAGDMFQS-I---------PPADAFFFKAIFHAF---VDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 235 ------~~~~v~~~~~d~~~~-~---------p~~D~i~~~~vl~~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
..-+++|.+.|++.. . |..|+|.+.+.+..+ ...+..++|.++...++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 123678899998752 1 236777776666542 355667899999999999 888999886
Q ss_pred ecC
Q 018205 296 VIN 298 (359)
Q Consensus 296 ~~~ 298 (359)
...
T Consensus 244 pGS 246 (315)
T PF11312_consen 244 PGS 246 (315)
T ss_pred CCC
Confidence 644
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.061 Score=49.28 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=70.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeC-CCCC-CCCC--ccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAG-DMFQ-SIPP--ADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~-d~~~-~~p~--~D~i~~~~ 260 (359)
...+..|||==||||.+++...-. +++++|.|+.. |++-|+. -....+... |+.. ++++ +|.|++--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999998766 88999999976 8888873 123434444 7744 5665 99988521
Q ss_pred h------hccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 261 I------FHAFV-DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 261 v------l~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
- ..--. ++-..++|+.+++.|++ ||.+++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1 11111 34457899999999999 888887554
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.004 Score=47.26 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=38.3
Q ss_pred EEeCCCcchHHHHHHHHCCCC---eEEEeeccc----ccccCC---CCCCceEeeCCCCCC---CC--CccEEEEcchhc
Q 018205 199 VDVGGGTGSFARIISEAFPGI---KCTVLDLPH----VVPKVP---DTDNLKFIAGDMFQS---IP--PADAFFFKAIFH 263 (359)
Q Consensus 199 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~----~~~~a~---~~~~v~~~~~d~~~~---~p--~~D~i~~~~vl~ 263 (359)
||||+..|..+..+++..+.. +++++|... .-+..+ ..++++++.++..+. ++ .+|+++.-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999988888776543 699999933 222222 256899999999542 22 589888743 23
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.. +....-++.+.+.|+| ||.+++-
T Consensus 80 ~~--~~~~~dl~~~~~~l~~---ggviv~d 104 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAP---GGVIVFD 104 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred CH--HHHHHHHHHHHHHcCC---CeEEEEe
Confidence 22 4556688899999999 6655553
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.02 Score=47.24 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+++++ +.+.+.++|+.|...||+...++ .+|.|.+.+..
T Consensus 24 ~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~rG------~~GGy~Lar~p 71 (164)
T PRK10857 24 GPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVRG------PGGGYLLGKDA 71 (164)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC------CCCCeeccCCH
Confidence 68999999999999 78999999999999999997642 15789887643
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.0084 Score=44.90 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=26.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL 226 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 226 (359)
.+....+|+|||+|.+.--|.+. +.+..|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35678999999999998887766 667899997
|
; GO: 0008168 methyltransferase activity |
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.02 Score=36.25 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
-++|..+||+.+|+ +...+.+.|+.|.+.|+++..
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe
Confidence 37899999999999 678999999999999999876
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.19 Score=47.26 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=45.6
Q ss_pred CCCeEEEeCCCcchHHHHH--------HHH-------CCCCeEEEeeccc--ccccCCC------------------CCC
Q 018205 194 GLGSLVDVGGGTGSFARII--------SEA-------FPGIKCTVLDLPH--VVPKVPD------------------TDN 238 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l--------~~~-------~p~~~~~~~D~~~--~~~~a~~------------------~~~ 238 (359)
+..+|+|+|||+|..+..+ .++ .|..++..-|+|. .-...+. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4679999999999654332 222 2467888888863 1111110 001
Q ss_pred ---ceEeeCCCCC-CCCC--ccEEEEcchhccCC
Q 018205 239 ---LKFIAGDMFQ-SIPP--ADAFFFKAIFHAFV 266 (359)
Q Consensus 239 ---v~~~~~d~~~-~~p~--~D~i~~~~vl~~~~ 266 (359)
+.-+.|.|+. -+|. .+++++++.+|.++
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 2334567766 3563 89999999998775
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0087 Score=38.24 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCcee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFS 84 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~ 84 (359)
+..|+..|.+. +++|..|||+.+|+ ....+.+.++.|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 45577778773 67999999999999 6899999999999999985
|
... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.03 Score=53.56 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=63.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCCCC---CC---CCccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQ---SI---PPADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~---~~---p~~D~i~~ 258 (359)
..+..+|+|+=||.|.++..|+++ ..+++|+|+ +++++.|+. -++++|..++..+ .. ..+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 568999999 458877762 4569999999854 12 14788886
Q ss_pred cchhccCCchHHH-HHHHHHHHhcccCCCCcEEEE
Q 018205 259 KAIFHAFVDEDCL-KILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 259 ~~vl~~~~~~~~~-~~L~~~~~~L~p~~~gG~lli 292 (359)
+-|+.-+. .+++.+.+.-.+ ..++|
T Consensus 369 -----DPPR~G~~~~~lk~l~~~~p~----~IvYV 394 (432)
T COG2265 369 -----DPPRAGADREVLKQLAKLKPK----RIVYV 394 (432)
T ss_pred -----CCCCCCCCHHHHHHHHhcCCC----cEEEE
Confidence 33333333 467776665443 55555
|
|
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0097 Score=42.39 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=41.5
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+..+.. ++.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|++|+.+..+.
T Consensus 12 L~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 12 LKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred HHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence 344443 79999999999999 789999999999999999775 59999999887544
|
|
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.015 Score=40.12 Aligned_cols=51 Identities=20% Similarity=0.355 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLT 104 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~ 104 (359)
+++++..+|++.+++ +...+.+.++.|...|+|++... +.++. ..|++|+.
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~---~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERD---PHDKRSKRYRLTPA 67 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE---SSCTTSEEEEE-HH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC---CCcCCeeEEEeCCC
Confidence 379999999999999 78999999999999999977641 11212 34777764
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.03 Score=44.88 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=37.9
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+.|+|.+.+++.|++-++-...++.|++.|+| ||.+-|+-+-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvPd 88 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVPD 88 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcCC
Confidence 49999999999999988889999999999999 8998886544
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.11 Score=46.61 Aligned_cols=148 Identities=14% Similarity=0.260 Sum_probs=97.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeeccccc-ccCC---C------------------------CCCceE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLPHVV-PKVP---D------------------------TDNLKF 241 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~-~~a~---~------------------------~~~v~~ 241 (359)
..+...|+.+|||.-.+...|...+ +.++++=+|.|+++ .+.. . .++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999998887 67788888988743 3331 0 233444
Q ss_pred eeCCCCC--CCC------C-----ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH
Q 018205 242 IAGDMFQ--SIP------P-----ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308 (359)
Q Consensus 242 ~~~d~~~--~~p------~-----~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~ 308 (359)
...|..+ .+. + +-++++=-+|.++++++...+++.+.+..+. +.+++.|.+.+... ++.
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~----Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDR----FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCCh----HHH
Confidence 4444421 000 0 2245556778889989888999999999885 88999999885543 111
Q ss_pred HHHhhhhhhhhh-cCC--cccCHHHHHHHHHHcCCceeEEEEe
Q 018205 309 AKLLYDMLMMVA-VRG--SERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 309 ~~~~~~~~~~~~-~~g--~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
. +.-++.-... ..| ..-|.+..+.-|.++||..+.+..+
T Consensus 237 v-M~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 V-MLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred H-HHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 0 1111110000 011 2347888999999999998887765
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.041 Score=51.71 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=67.0
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCC-CeEEEeec-ccccccCCC------CCCceEeeCCCCCCC----CCccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPG-IKCTVLDL-PHVVPKVPD------TDNLKFIAGDMFQSI----PPADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~----p~~D~i~~~~vl 262 (359)
..+|||.-||+|..++.++...++ -+++++|+ +..++.+++ ..++++..+|...-+ ..||+|.+-- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999998654 47999999 456665542 235788888885421 3499998743 2
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..+ ..++..+.+.+++ +|.+++..
T Consensus 124 ---Gs~--~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 ---GTP--APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred ---CCc--HHHHHHHHHhccc---CCEEEEEe
Confidence 222 2489999999998 78888864
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.0032 Score=45.23 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=46.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKL 107 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
++++|...|... +.+++.+|.+.+|+ +...|.+.|+.|+..|+++...... ..-..-.|++|+.++.
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~-~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFE-GRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-S-SS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEecc-CCCCeEEEEECHHHHH
Confidence 356667777653 68999999999999 6799999999999999998765211 0001123888877753
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.097 Score=44.54 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=53.4
Q ss_pred CCCeEEEeCCCcchHHHHHH---HHC-CCCeEEEeec--ccccccCCC----CCCceEeeCCCCCC-----C------CC
Q 018205 194 GLGSLVDVGGGTGSFARIIS---EAF-PGIKCTVLDL--PHVVPKVPD----TDNLKFIAGDMFQS-----I------PP 252 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~---~~~-p~~~~~~~D~--~~~~~~a~~----~~~v~~~~~d~~~~-----~------p~ 252 (359)
++..|+++|.-.|.-+...+ +.+ ++.+++++|+ +..-..+.+ .+||+++.||..++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 37999999999988665554 344 7789999999 333333444 48999999998542 1 12
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..+|+ -..=|.. +.+.+.|+.....+++ |+.++|.|...
T Consensus 112 ~vlVi-lDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVI-LDSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTII 150 (206)
T ss_dssp SEEEE-ESS------SSHHHHHHHHHHT--T---T-EEEETSHHH
T ss_pred ceEEE-ECCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccc
Confidence 33333 3333433 3346688889999999 78777766554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=43.30 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCCCCC-----CccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQSIP-----PADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~~~p-----~~D~i~~~~vl 262 (359)
.+++||=||=.- ..+.+++-..+..+++++|+.+ .++..+ ..-.|+.+..|+..++| .||++++-=.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999999544 5666666666677999999965 666544 13349999999988777 3999997422
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
++.+-..-++.+..+.|+. +|+..++ .....+... . ...++++.+.+.||.+
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy~-~~~~~~~s~-----~------------------~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG--EGCAGYF-GFTHKEASP-----D------------------KWLEVQRFLLEMGLVI 173 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEEE-EE-TTT--H-----H------------------HHHHHHHHHHTS--EE
T ss_pred --CCHHHHHHHHHHHHHHhCC--CCceEEE-EEecCcCcH-----H------------------HHHHHHHHHHHCCcCH
Confidence 3446667799999999997 2444333 322211100 0 1124667777888888
Q ss_pred eEEEEeCC
Q 018205 343 FKITPVYG 350 (359)
Q Consensus 343 ~~~~~~~~ 350 (359)
.++.+-++
T Consensus 174 ~dii~~Fn 181 (243)
T PF01861_consen 174 TDIIPDFN 181 (243)
T ss_dssp EEEEEEEE
T ss_pred HHHHhhhc
Confidence 88877644
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.025 Score=43.86 Aligned_cols=49 Identities=14% Similarity=0.406 Sum_probs=40.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANV 88 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~ 88 (359)
+..+|-+|-+.++|.|+++||+.++. +...+.|-|+-|...|++.++..
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 44455555422389999999999999 78999999999999999998863
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.048 Score=43.45 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|+++||+.+++ +.+.++++|+.|...|++...++ ..|.|.+++...
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~G------~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVRG------PGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeC------CCCCEeccCCHH
Confidence 58999999999999 78999999999999999986542 146788876443
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.044 Score=44.50 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|+++||+..|+ ++.+|.++|..|...||++..++. .|.|++++-..
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG~------~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRGK------GGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecCC------CCCccCCCChH
Confidence 38899999999999 679999999999999999877632 58899887543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.36 Score=43.70 Aligned_cols=75 Identities=13% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCCeEEEeCCCcch-HHHHHHHHCCCCeEEEeecc-cccccCCC--------CCCceEeeC----CCCCCC----CCcc
Q 018205 193 QGLGSLVDVGGGTGS-FARIISEAFPGIKCTVLDLP-HVVPKVPD--------TDNLKFIAG----DMFQSI----PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~-~~~~~a~~--------~~~v~~~~~----d~~~~~----p~~D 254 (359)
+...++||||+|..- +...-++.+ ++++++.|+. ..++.|++ .++|+++.. +++..+ ..||
T Consensus 101 ~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 101 PEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp S---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceee
Confidence 346799999999875 444444444 9999999994 47777762 567888755 344422 1399
Q ss_pred EEEEcchhccCCch
Q 018205 255 AFFFKAIFHAFVDE 268 (359)
Q Consensus 255 ~i~~~~vl~~~~~~ 268 (359)
..+|+==||.-.++
T Consensus 180 ftmCNPPFy~s~~e 193 (299)
T PF05971_consen 180 FTMCNPPFYSSQEE 193 (299)
T ss_dssp EEEE-----SS---
T ss_pred EEecCCccccChhh
Confidence 99998888766544
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.047 Score=45.70 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccc
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKL 107 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~ 107 (359)
..+|..-.++.|++.|...+++.|+.+|++.+ ++ +...+.|.|+.|+..|+++......+-...+..|+++..+..
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~~ 81 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDAK 81 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccceee
Confidence 35666778888999997743459999999999 56 678899999999999999976421100111234777765543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.13 Score=49.34 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=61.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-----ccccccCCCCCCceEeeCCC---CCCCCC-ccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-----PHVVPKVPDTDNLKFIAGDM---FQSIPP-ADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~d~---~~~~p~-~D~i~~~~vl~ 263 (359)
.....|+|..+|.|.++.+|.+. | +.+... +..+...-. ..+--+-.|- |...|. ||++...++|.
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhhh
Confidence 45678999999999999999764 2 444433 222221111 1122222333 223554 99999999998
Q ss_pred cCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 264 AFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+. .-+...+|-++-|+|+| +|.++|-|
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEec
Confidence 765 33556789999999999 89988854
|
; GO: 0008168 methyltransferase activity |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.091 Score=45.01 Aligned_cols=95 Identities=21% Similarity=0.375 Sum_probs=66.6
Q ss_pred ccCCCCeEEEeCCCcchHHHHHHHHCCC------C---eEEEeecccccccCCCCCCceEeeCCCCCC---------CC-
Q 018205 191 IFQGLGSLVDVGGGTGSFARIISEAFPG------I---KCTVLDLPHVVPKVPDTDNLKFIAGDMFQS---------IP- 251 (359)
Q Consensus 191 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~------~---~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---------~p- 251 (359)
.+.+..+++|+.+..|.++..|.++.-+ . +++.+|+..|... +.|.-+++|+..+ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHHhCC
Confidence 4567889999999999999988887521 1 3999999776555 5688888999642 12
Q ss_pred -CccEEEEcch-----hccCCc----hHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 252 -PADAFFFKAI-----FHAFVD----EDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 252 -~~D~i~~~~v-----l~~~~~----~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+|+|+|-.. +|.+.. +-....|.-...+|+| ||.++-
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 3899998643 666532 1223445666788999 776553
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.22 Score=43.70 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---C---------CCCceEeeCCCCC------CCCC-cc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---D---------TDNLKFIAGDMFQ------SIPP-AD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---~---------~~~v~~~~~d~~~------~~p~-~D 254 (359)
...+||++|+|+|..+.. +......+++.-|++..++..+ . ...+.....+--. -.|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~-aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGIL-AALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHH-HHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999955554 4444578999999977544332 1 1123322222111 1234 89
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|+.+.+++.-... ..+++-+...|.. ++.+++.-....
T Consensus 165 lilasDvvy~~~~~--e~Lv~tla~ll~~---~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEESF--EGLVKTLAFLLAK---DGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCcc--hhHHHHHHHHHhc---CCeEEEEEeccc
Confidence 99999998765433 4478888888877 675555444443
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.027 Score=38.01 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.+.|....+|.+..|||+.+|+ +.-..+++|..|+..|.++...
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 344555542379999999999999 6788999999999999998753
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.068 Score=35.53 Aligned_cols=44 Identities=11% Similarity=0.275 Sum_probs=38.4
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.+.|.+. +..|+++||+.+|+ ....++|=|+.|...|++.+..
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 45566663 79999999999999 6799999999999999999885
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.036 Score=37.91 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|-|.|+.||++.+|+. ....+.+.|+.|+..|+|....
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 4588999999999995 5899999999999999999874
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.071 Score=48.44 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=52.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMF 247 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~ 247 (359)
+.+++.+. ..+...++|.=+|.|.++..++++.|+.+++++|. +.+++.+++ .+|++++.++|.
T Consensus 10 ~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 10 DEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred HHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 67777776 45667999999999999999999987789999999 457776652 358999998884
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.38 Score=45.37 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=66.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcch----HHHHHHHHC---CCCeEEEeeccc-----ccccCC-------C--CCCce
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGS----FARIISEAF---PGIKCTVLDLPH-----VVPKVP-------D--TDNLK 240 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~-------~--~~~v~ 240 (359)
+.|++.+. -.+..+|+|+|.|.|. +...|+.+. |.+++|+++.|. .++.+. + .-.++
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 67778776 4567899999999996 445555543 678999999943 222221 0 22334
Q ss_pred EeeC--CCCCCC--------C-CccEEEEcchhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 241 FIAG--DMFQSI--------P-PADAFFFKAIFHAFVDE------DCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 241 ~~~~--d~~~~~--------p-~~D~i~~~~vl~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
|... +-.+.+ + ++=+|-+...||++.++ ....+|+.++ .|+| -.++++|...+.+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea~~n 249 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEADHN 249 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecCCCC
Confidence 4432 221221 1 13344466778888632 2344676665 6788 5777777765543
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.069 Score=42.95 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+++.++.+||+.+++ ....+.+.++.|...|++.... ...|++|+.+..+
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~ 69 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKI 69 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHH
Confidence 378899999999999 6789999999999999998764 4789999887643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.19 Score=47.97 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=72.8
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc-----CCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCC
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK-----VPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFV 266 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~-----a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~ 266 (359)
.+++-+|||.-.+...+-+.. ...++.+|.+. +++. +++.....+...|+.. .++ +||+|+....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 489999999998888776653 33699999966 4432 2356778899999965 455 599999999998863
Q ss_pred -chHH-------HHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 267 -DEDC-------LKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 267 -~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+++. ...+..+++++++ ||+.+.+...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 3322 2458899999999 8998888874
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.062 Score=47.33 Aligned_cols=65 Identities=14% Similarity=0.331 Sum_probs=55.2
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++...-+.+|+-.|.+ ||+|.+||-..+++ ....+..-++-|...|++.++ ++.|++|..+..++
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~---------~~~Y~LS~~G~iiv 73 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE---------GDRYSLSSLGKIIV 73 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec---------CCEEEecchHHHHH
Confidence 4456677888888987 89999999999999 567788889999999999998 49999998876544
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.1 Score=48.11 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCCCC---CCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQSI---PPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~---p~~D~i~~~~v 261 (359)
..+.+|||.=+|.|-++..+++.. ..+++++|+ |..++..++ .++++.+.+|..+-. +.+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 347999999999999999999874 334999999 666665542 456899999996522 45999998764
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
- ...+++..+.+.+++ ||.+.+.+....+
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYYEFVPED 294 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEEeccchh
Confidence 3 224588888889998 7888777765544
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.038 Score=37.25 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=36.4
Q ss_pred CcchhcccCCCC-CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRP-ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++..|...+++ +|..|||+.+++ ++..+.+.++.|+..|++++..
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344455553222 899999999999 6899999999999999999874
|
... |
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.079 Score=41.92 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=40.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|.++||+.+++ +...++++|+.|...|++....+ ..|.|.+++...
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g------~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRG------PGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccC------CCCCccCCCCHH
Confidence 59999999999999 68999999999999999986531 146788766443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.097 Score=42.66 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=47.1
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+++++.+.+-.. . +++.|+++||+..++ +...|.++|..|...||++..++. .|.|++++..
T Consensus 9 YAlr~L~~LA~~----~-~~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~rG~------~GGy~La~~p 70 (153)
T PRK11920 9 YAIRMLMYCAAN----D-GKLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVRGR------NGGVRLGRPA 70 (153)
T ss_pred HHHHHHHHHHhC----C-CCcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecCC------CCCeeecCCH
Confidence 455555554321 1 257899999999999 789999999999999999877632 5789887644
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.12 Score=43.11 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=40.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
...|+++|..+ +++|.++||+.+|+ ....++++|..|...||+....
T Consensus 24 ~~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 24 GFEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred HhHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 34478888775 69999999999999 6899999999999999998553
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.05 Score=37.76 Aligned_cols=44 Identities=14% Similarity=0.413 Sum_probs=35.5
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|-+.|.+ .+.+|+.|||+.+++ ++..+..+|..|+..|.+.+..
T Consensus 5 i~~~l~~-~~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRE-RGRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHH-S-SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3455665 378999999999999 6899999999999999999875
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.089 Score=47.81 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=47.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----CCCCceEeeCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----DTDNLKFIAGDM 246 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~v~~~~~d~ 246 (359)
+++++.+. ..+...++|.=-|.|.++..+++++|+.+++++|. |.+++.|+ ..+|+.++..+|
T Consensus 10 ~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F 78 (310)
T PF01795_consen 10 KEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF 78 (310)
T ss_dssp HHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G
T ss_pred HHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH
Confidence 67777776 56678999999999999999999999999999999 55776554 257899999888
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.16 Score=40.44 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=70.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~-~~p~ 252 (359)
+.++.-+. ..+..+.+|+|+|.|......++.. -...+|+++ |..+..++ -..+..|...|+++ ++..
T Consensus 62 ~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 62 ENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 45555555 3455899999999999988877763 357899999 55655544 26788899999987 5666
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|..++.+.+=..++ .+-.+++.-|+. +.+++-.-...+.
T Consensus 139 y~~vviFgaes~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 139 YRNVVIFGAESVMP-----DLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred cceEEEeehHHHHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 66555544332222 244555656666 6777766655554
|
|
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.091 Score=44.84 Aligned_cols=56 Identities=18% Similarity=0.373 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 27 VSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 27 ~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
-..++|...+++.|+..|+.. +|+.+.|||+++|+ ++..+..-+..|+..|++.-+
T Consensus 15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeee
Confidence 345678889999999999885 79999999999999 788999999999999999754
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.083 Score=39.22 Aligned_cols=47 Identities=11% Similarity=0.321 Sum_probs=39.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.++..|... +++|..+|++.+++ +...+.+.++-|+..|+++...
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~ 58 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLP 58 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecC
Confidence 44566666653 57999999999999 6788999999999999998764
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.097 Score=41.34 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=38.2
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
++.|+.|||+.+++ +...+.++|+.|...|++....+ ..+.|.+.+
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g------~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRG------VEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCC------CCCChhhcC
Confidence 68999999999999 68999999999999999986531 135677654
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.13 Score=44.13 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=46.6
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.|+..|... +++|+.+||+.+|+ +...+++.|+.|+..|+++........+-..-.|++|+.+....
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 456666553 68999999999999 67999999999999999987621000000112378887765443
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.12 Score=41.51 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=45.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
+++++.+.++.+ .. |.+.|.++||+..|+ +...+++.|+.|...|+++...+. +|.|.+.+
T Consensus 9 YAl~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G~------~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRGK------NGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecCC------CCCeeecC
Confidence 455555555433 22 357899999999999 689999999999999999877521 46787765
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.024 Score=48.14 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~ 248 (359)
....|+|.-||.|.-++.++.++|. |+++|+ |.-+.-|+ -.+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 4678999999999999999988664 889998 43444444 15699999999975
|
|
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.11 Score=42.33 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=45.4
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
|...+.. +++.+..+||+.+++ +...+.++++.|...|++.... ...+++|+.+..+
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l 98 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKL 98 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHH
Confidence 4445544 368999999999999 6899999999999999998764 3567788766544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.4 Score=46.23 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=82.5
Q ss_pred ChhhhcccCccHHHHHHHHHhhcccchHHHHHhccccc-CCCCeEEEeCCCcchHHHHHHHHC----CCCeEEEeec-cc
Q 018205 155 VFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIF-QGLGSLVDVGGGTGSFARIISEAF----PGIKCTVLDL-PH 228 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~ 228 (359)
..|+.+++|+-....|.+|+. .++++..+... +....|.-+|+|.|-+..+..+.- ..+++++++- |.
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 346667777766666665554 35555555322 225678889999998776665532 3567888886 65
Q ss_pred ccccCC------CCCCceEeeCCCCC-CCC--CccEEEEcchhccCCc-hHHHHHHHHHHHhcccCCCCcEEE
Q 018205 229 VVPKVP------DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD-EDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 229 ~~~~a~------~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~-~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
++.... -.++|+++..||.. .-| .+|++++ ..|--+.| +-..+.|.-+-+.|+| +|.-|
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp---dgIsI 475 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP---DGISI 475 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC---CceEc
Confidence 443322 16899999999966 333 4898875 33444443 3346789999999999 75433
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.19 Score=32.76 Aligned_cols=42 Identities=33% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHH
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLL 77 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 77 (359)
-.+|.+|.+.|-||.= ...|++|||+.+|+ ....+...||-.
T Consensus 6 ~e~L~~A~~~GYfd~P----R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 6 REILKAAYELGYFDVP----RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHcCCCCCC----CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 3588999999999875 37899999999999 566777777654
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.29 Score=41.01 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCC------CCCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQS------IPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~------~p~~D~i~~~ 259 (359)
.+.++||+=+|+|.++...+.+. -.+++.+|.+. .+...+ ...+++++..|.... .+.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 47899999999999999998885 34899999843 554443 257888888888531 1139999975
Q ss_pred chhc-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 AIFH-AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~vl~-~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
==++ ..-+.....++-.-..+|+| +.++++|....
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 4443 11111221122224577998 55666665544
|
|
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.11 Score=35.97 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=42.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|+..|.+ ++.+..+||+.+|+ ....+.+.++.|.+.|+..... +..|++.+.
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~--------~~g~~l~~~ 56 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV--------GKGYRLPPP 56 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec--------CCceEecCc
Confidence 456667776 68999999999999 6899999999999999965443 356666543
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.38 Score=38.36 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ 248 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 248 (359)
..-|+|+|=|+|.+=..|.+.+|+.+++++|..-.+.-....+.-.++.||+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 478999999999999999999999999999974333222223445788888854
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.22 Score=32.92 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..+ |..+||+.+|+ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 6899999999999999998764
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.31 Score=32.90 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.5
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|..+||+.+++ +...+.+.|..|...|+++...
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 6799999999999999998664
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.046 Score=36.46 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=35.8
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|.+. +++|..+||+.+++ +...+.++++.|+..|++++..
T Consensus 9 L~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 9 LRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 3334443 68999999999999 7899999999999999999875
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.2 Score=33.57 Aligned_cols=42 Identities=10% Similarity=0.225 Sum_probs=35.4
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 3 l~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 3 LKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 444443 68999999999999 5788999999999999998664
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.19 Score=46.80 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=65.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCC---------------------------------------eEEEeecc-cccc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGI---------------------------------------KCTVLDLP-HVVP 231 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~~-~~~~ 231 (359)
+.+...++|==||+|++++..+...+++ .++|+|+. .+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4455799999999999999988877532 27799994 5888
Q ss_pred cCC-------CCCCceEeeCCCCC-CCC--CccEEEEcchh-ccCCchHH-----HHHHHHHHHhcccCCCCcEEEEE
Q 018205 232 KVP-------DTDNLKFIAGDMFQ-SIP--PADAFFFKAIF-HAFVDEDC-----LKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 232 ~a~-------~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl-~~~~~~~~-----~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.|+ ..+.|+|.++|+.. .-| .+|+|+++--- ..+.++.. ..+.+.+++.++. .+..+++
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~---ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG---WSRYVFT 343 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC---CceEEEE
Confidence 776 26789999999954 233 58999986211 01222221 2355566666664 4555553
|
|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.15 Score=33.46 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=31.9
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccC
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTG 81 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g 81 (359)
|+..|.+.++++|.++||+.+++ ..+.+.+-++.|...|
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 44556333467999999999999 6899999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.13 Score=44.19 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=45.8
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc----eEeccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE----AYALTLTSKL 107 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~----~~~~t~~~~~ 107 (359)
.|...|.++ +|+|++|||+++|+ +...+++.|..|++.|+++.... ..+-| .|++|..+..
T Consensus 15 ~il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~----~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQ----QGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeec----cCCCCCCceeeeecccchh
Confidence 344556654 79999999999999 67999999999999999986631 11112 3888877654
|
|
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.088 Score=38.67 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=45.1
Q ss_pred chhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+..|.. ++....||.+.+ |+ ....|.+-|+.|++.|++++...... ...-.|++|+.+..+.
T Consensus 11 L~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~--p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 11 LRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEV--PPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSS--SSEEEEEE-HHHHHHH
T ss_pred HHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCC--CCCCccCCCcCHHHHH
Confidence 344554 799999999999 88 67899999999999999988742110 0123599999887655
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.12 Score=43.56 Aligned_cols=85 Identities=19% Similarity=0.393 Sum_probs=58.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC----C-----CCCceEeeCCCCCC-----CC--C----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP----D-----TDNLKFIAGDMFQS-----IP--P---- 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~-----~~~v~~~~~d~~~~-----~p--~---- 252 (359)
++...|+-+|||--.....+....++++++-+|.|++++.-+ + ..+++++..|+.++ +. +
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 344599999999999999998877788999999998665432 1 12467899999641 11 2
Q ss_pred -ccEEEEcchhccCCchHHHHHHHHH
Q 018205 253 -ADAFFFKAIFHAFVDEDCLKILKRC 277 (359)
Q Consensus 253 -~D~i~~~~vl~~~~~~~~~~~L~~~ 277 (359)
.-++++-.++.+++.+++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 3377788889999999888888765
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.24 Score=38.34 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=48.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
...++..|... ++.|..+||+.+++ +...+.+.++-|+..|+++.... +.|. .-.+.+|+.+..+.
T Consensus 30 q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~---~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 30 QWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKA---SNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccC---CCCCCeeEEEECHhHHHHH
Confidence 34466666653 68999999999999 67899999999999999998641 1110 12488888776554
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.11 Score=48.73 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=40.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC------CCCCceEeeCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDM 246 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~ 246 (359)
..+++.++ ..+ .+|||+=||.|.++..+++.. .+++|+|. +++++.|+ .-++++|+.++.
T Consensus 187 ~~~~~~l~--~~~-~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 187 EQALEWLD--LSK-GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHCT--T-T-TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHhh--cCC-CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 34444444 333 389999999999999999874 47999999 45888776 246788887765
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.96 Score=41.97 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=75.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHH--------HC--------CCCeEEEeeccc--ccccCCC----------CCCc--eE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISE--------AF--------PGIKCTVLDLPH--VVPKVPD----------TDNL--KF 241 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~--------~~--------p~~~~~~~D~~~--~~~~a~~----------~~~v--~~ 241 (359)
.++..+|+|+||.+|..+..+.. ++ |..+++.-|+|. .-...+. ...+ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 45678999999999986554432 21 235788889864 2222111 1233 44
Q ss_pred eeCCCCCC-CCC--ccEEEEcchhccCCc-------------------------------------hHHHHHHHHHHHhc
Q 018205 242 IAGDMFQS-IPP--ADAFFFKAIFHAFVD-------------------------------------EDCLKILKRCREAI 281 (359)
Q Consensus 242 ~~~d~~~~-~p~--~D~i~~~~vl~~~~~-------------------------------------~~~~~~L~~~~~~L 281 (359)
+.+.|+.. +|. .|++++++.||.++. .+...+|+.=.+=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 56788773 563 999999999987742 01112333333557
Q ss_pred ccCCCCcEEEEEeeecCCCCcch-----HHHH-HHHhhhhhhhhh----------cCCcccCHHHHHHHHHHcC-Cce
Q 018205 282 ASRGDRGKVIIIDIVINEKKEDA-----QLTE-AKLLYDMLMMVA----------VRGSERTEKEWEKLFLDAG-FSH 342 (359)
Q Consensus 282 ~p~~~gG~lli~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~----------~~g~~~t~~~~~~ll~~aG-f~~ 342 (359)
+| ||++++.-...++..... .+.. ...+.++.-... ..-..++.+|+++.+++.| |++
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 88 898888887777632110 0100 112222211100 0113579999999999987 444
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.18 Score=34.91 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=36.3
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|+..+.. ++.+..||++.+++ +...+.+.|+.|...|++....
T Consensus 11 ~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~ 54 (78)
T cd00090 11 RILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRR 54 (78)
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEE
Confidence 34555555 34999999999999 6789999999999999998764
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.2 Score=40.85 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
++++...+||+.+++ .+..+...++-|...|+++... .+.+.+|+.++..
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~ 71 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREK 71 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHH
Confidence 379999999999999 5688899999999999999986 6899999887644
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.14 Score=38.75 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=43.5
Q ss_pred ccEEEEcchhc----cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 253 ADAFFFKAIFH----AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 253 ~D~i~~~~vl~----~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
||+|+|..|-- ++.|+-...+++++++.|+| |.++|.|+-... +|......... +......-.+.+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~w~-----sY~~~~~~~~~-~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQPWK-----SYKKAKRLSEE-IRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE---HH-----HHHTTTTS-HH-HHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCCcH-----HHHHHhhhhHH-HHhHHhceEECh
Confidence 89999987742 25688899999999999999 455666644321 12111100000 000001112345
Q ss_pred HHHHHHHHH--cCCceeEEEEe
Q 018205 329 KEWEKLFLD--AGFSHFKITPV 348 (359)
Q Consensus 329 ~~~~~ll~~--aGf~~~~~~~~ 348 (359)
+++.+.|.+ .||+..+....
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE--
T ss_pred HHHHHHHHhcccceEEEEEccc
Confidence 678888887 59998775544
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.19 Score=43.13 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=44.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+..++..|.+. ++.+..+||+.+++ ++..+.+.|+.|...|++.+... ....|.+|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~------r~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR------KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC------CccEEEeCCC
Confidence 34556666553 58899999999999 67899999999999999998741 0345777764
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.23 Score=31.84 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=35.7
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|.+. ++.|+.+|++.+++ ....+.+.|+.|...|++....
T Consensus 6 l~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 6 LELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 3344432 57999999999999 6799999999999999998764
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.16 Score=41.55 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=39.3
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+++|..+ +++|-++||+.+|+ +...++++|..|...||+...+
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4467777754 69999999999999 7899999999999999997553
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.21 Score=48.01 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=43.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------CCCceEeeCCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------TDNLKFIAGDM 246 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~ 246 (359)
++..+.++|+-||||.++..+++. -.+++|+++ ++.++.|+. -.+.+|+++-.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 566689999999999999999887 457999999 558887773 45778999844
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.25 Score=33.21 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++.+..+||+.+|+ .+..+...++-|...|+++.+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 479999999999999 5789999999999999999874
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.22 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=25.7
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
|+|-+|||+.+|+ ..+.+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 579999999999998875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.54 Score=43.69 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---------------CCCCceEeeCCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---------------DTDNLKFIAGDM 246 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---------------~~~~v~~~~~d~ 246 (359)
.+.+.+. ..+.....|+|+|.|.....++.-.....-+|+++.. .-+.|. ....++.+.++|
T Consensus 183 si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3444444 6677899999999999998887755444677877722 111111 256788999999
Q ss_pred CCC------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 247 FQS------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 247 ~~~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
..+ .+.+++|+++++.. .++.. .=++++..-+++ |-+++-.++..+-
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~F--dp~L~-lr~~eil~~ck~---gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAF--DPELK-LRSKEILQKCKD---GTRIISSKPLVPR 313 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccC--CHHHH-HhhHHHHhhCCC---cceEecccccccc
Confidence 653 24599999999873 33332 234477777888 7888877777763
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.25 Score=38.08 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=44.1
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+...|.+.+.++ |.+|+.+++..+|+ +...+.++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 345667788888875 79999999999999 6899999999999999998874
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.5 Score=39.57 Aligned_cols=107 Identities=12% Similarity=0.193 Sum_probs=71.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC---CccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP---PADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p---~~D~i 256 (359)
..++.+|||..++.|.=+..+++..++ ..++++|.+. -++... ...++..+..|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456799999999999999999998875 5679999954 333222 13446777777632 122 28988
Q ss_pred EEc------chh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 257 FFK------AIF-------HAFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 257 ~~~------~vl-------~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
++- .++ ..+...+ -.++|+.+.+.|+| ||.|+..........
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~eE 295 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTPEE 295 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCchhc
Confidence 831 222 2333222 24789999999999 888888777665443
|
|
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.31 Score=36.04 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 53 LPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 53 ~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+.+||+.+++ +...+.+.++.|+..|++.... +..|.+|+.+..+
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~ 46 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRL 46 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHH
Confidence 5689999999 6899999999999999999985 4578888877544
|
iron dependent repressor |
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.24 Score=38.07 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=39.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCC--CCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEIN--PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~--~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.-|++.|...+++.|++||.+.+.-. ..+...+.|.|+.|++.|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 344677776655789999999998321 116788999999999999998764
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.3 Score=37.87 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=43.6
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+=-.+.|...|++. +|.|+.|+|+.+|= +...+.|-|+.|+..|++..+.
T Consensus 62 Lsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 62 LSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred hChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 334456778888875 79999999999998 7899999999999999999875
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.48 Score=35.13 Aligned_cols=45 Identities=4% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.++|-.|||+.+|+ +...+.|.|+.|+..|+|...+. .+.|..+.
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-------~~~~~~n~ 90 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-------MGIVGVNT 90 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-------CceeecCC
Confidence 59999999999999 67899999999999999997742 37777763
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.26 Score=39.62 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=44.5
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
++..|...+++.|..+||+.+++ +...+.+.++.|+..|+|++... +.|.. -...+|+.++.+.
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~---~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTC---ASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecC---CCCcCeeeeEEChHHHHHH
Confidence 34445432346899999999999 67899999999999999998741 01100 1366777665444
|
|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.26 Score=39.61 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.|+..|.. .+++|..+||+.+++ +...+.+.++.|+..|++.+... +.|.. -...+|+.++.+.
T Consensus 44 ~vL~~l~~-~~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~---~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 44 KVLCSIRC-AACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPN---PNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccC---cccCCeeEeEEChhHHHHH
Confidence 34555654 268999999999999 68999999999999999998741 11101 1256666665443
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.24 Score=37.59 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=39.6
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.+..|+..|.+. ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 345667777763 68999999999999 689999999999999999843
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.42 Score=42.71 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=67.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCC----------CCCCceEeeCCCCC---CC--CCcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVP----------DTDNLKFIAGDMFQ---SI--PPAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~----------~~~~v~~~~~d~~~---~~--p~~D 254 (359)
.+.+++++-||+|.|.+.+...+. +.+ ++..+|+.. +++..+ +.++|.+.-||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999988776 544 577888855 555443 37899999998743 22 3499
Q ss_pred EEEEcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|+.-..=-..+-. -...++.-+.++||+ +|.+++..-.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence 99853211111100 012456667788998 7887776543
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.53 Score=42.31 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=53.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeec-ccccccCCC-----CCCceEeeCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDL-PHVVPKVPD-----TDNLKFIAGDM 246 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~ 246 (359)
+.+++.+. ..+....+|.=-|.|.++..+++++|.. +++++|. |.+++.|++ .+|++++..+|
T Consensus 13 ~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F 82 (314)
T COG0275 13 NEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF 82 (314)
T ss_pred HHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcH
Confidence 67777777 5567999999999999999999999866 5999999 568888873 56899999887
|
|
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.28 Score=43.50 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=42.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.+.|.++||.++=+||.+++|+ ++..+.|+|+-|+.+|++++.+
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEE
Confidence 34566777777888999999999999 6899999999999999999876
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.16 Score=37.36 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++....-|.-.+++ +-......++.|+..|++....++. ...|.+|+.+..|.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~~~-----~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDNGR-----RKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccCCc-----cceEEEChhHHHHH
Confidence 478888999999999 7899999999999999777664210 12699999987664
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.69 Score=39.92 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=42.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
..+|..+||+.+++ +...+.|.|+.|+..|++++.... ....+++|+.+..+.
T Consensus 20 ~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~-----r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP-----RGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC-----CceEEEECHHHHHHH
Confidence 46899999999999 689999999999999999987421 134577787776444
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.4 Score=32.91 Aligned_cols=120 Identities=19% Similarity=0.210 Sum_probs=71.7
Q ss_pred EeCCCcchHHHHHHHHCC-CC--eEEEeeccc-ccccCC---------CCCCceEeeC-CCCC---CC--C--CccEEEE
Q 018205 200 DVGGGTGSFARIISEAFP-GI--KCTVLDLPH-VVPKVP---------DTDNLKFIAG-DMFQ---SI--P--PADAFFF 258 (359)
Q Consensus 200 DvG~G~G~~~~~l~~~~p-~~--~~~~~D~~~-~~~~a~---------~~~~v~~~~~-d~~~---~~--p--~~D~i~~ 258 (359)
=||=|.=.++..|++.++ .. -+|..|-.+ +.+... +..++.++.+ |..+ .. . .||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 467788889999999987 44 455566533 444433 1334444433 5532 12 1 3999997
Q ss_pred cchhcc-----------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC
Q 018205 259 KAIFHA-----------FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT 327 (359)
Q Consensus 259 ~~vl~~-----------~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++=-.- ....-...+++.+.++|++ +|.|.|.-..... ++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence 543221 0122345788899999999 8988885433221 11
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.=.+.++.+++||...+..+.
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred cccHHHHHHhcCCEEEEEecC
Confidence 112446677789988887766
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=2.2 Score=41.90 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=60.7
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEeeCCCC------------------------
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMF------------------------ 247 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~------------------------ 247 (359)
++.+|+=+|||. |..+...++.. +.+++++|. ++..+.+++. ..+++..|..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999996 67777778777 568999999 4466666542 2222211110
Q ss_pred -C-CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 248 -Q-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 248 -~-~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
. ...++|+++..-....-+.+ ..+.++..+.++| ||.++.+..
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCC---CCEEEEEcc
Confidence 0 01358999876543222122 1246999999999 888777654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.94 E-value=1 Score=39.94 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCC--------CCeEEEeeccccc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFP--------GIKCTVLDLPHVV 230 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~ 230 (359)
+.+|+|+|+|+|.++..+++... .++++.+|.+..+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 47999999999999988877553 3589999996533
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.6 Score=38.90 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred cCCCCeEEEeCCC-cchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCC---CCCCCCC-ccEEEEcchhccC
Q 018205 192 FQGLGSLVDVGGG-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGD---MFQSIPP-ADAFFFKAIFHAF 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d---~~~~~p~-~D~i~~~~vl~~~ 265 (359)
..+..+|+=+|+| .|.++..+++.. +.+++++|.++ -.+.|++...-.++... ..+...+ +|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 5567888888877 456888888877 48999999965 66666654444444432 2222333 898886443 1
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..+....+.|++ +|+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 256677778998 89999988764
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=87.76 E-value=6.5 Score=30.04 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=57.6
Q ss_pred CCCeEEEeCCCcchHH-HHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCC----CCccEEEEcchhccCCch
Q 018205 194 GLGSLVDVGGGTGSFA-RIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSI----PPADAFFFKAIFHAFVDE 268 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~-~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----p~~D~i~~~~vl~~~~~~ 268 (359)
..++|++||-|.=... ..|+++ ++.++++|+.+- .|. ..++++.-|++++- .++|+|.+-. +.+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 4569999999976544 444444 578999999543 332 67899999998752 2588887633 445
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+....+-.+.+.++ ..++|.-..
T Consensus 82 El~~~ildva~aVg-----a~l~I~pL~ 104 (129)
T COG1255 82 ELQSAILDVAKAVG-----APLYIKPLT 104 (129)
T ss_pred HHHHHHHHHHHhhC-----CCEEEEecC
Confidence 55556666666664 345554433
|
|
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.6 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+....++++.+-|..-+|....+ ++.-..||-+.++ + .+..|.+-|+.|+..|++++..-...|
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~P- 76 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEEP- 76 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCCC-
Confidence 36677888888888777765443 5889999999998 8 679999999999999999987521111
Q ss_pred CccceEeccccccccc
Q 018205 94 QEEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.++.+.
T Consensus 77 -prveY~LT~~G~~L~ 91 (120)
T COG1733 77 -PRVEYRLTEKGRDLL 91 (120)
T ss_pred -ceeEEEEhhhHHHHH
Confidence 234699998876554
|
|
| >PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.51 Score=32.90 Aligned_cols=38 Identities=16% Similarity=0.461 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhc---CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSAL---EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~---~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+++.++|+.+ +... ..+++..++++|++.|++++..
T Consensus 23 ~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 689999999999 8721 3699999999999999999964
|
Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B. |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.9 Score=35.83 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc--CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 26 YVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL--EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 26 ~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
-|...+++..+.+.= +..++++||+++ ++ ...-++.-|+.|+..|++++.+ +|.|..|.
T Consensus 23 ~W~~~~ir~l~~l~~--------~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~--------~g~y~~t~ 83 (171)
T PF14394_consen 23 SWYHPAIRELLPLMP--------FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG--------DGKYVQTD 83 (171)
T ss_pred hhHHHHHHHHhhcCC--------CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC--------CCcEEEec
Confidence 344445555444332 244899999999 99 6788999999999999999997 67999887
Q ss_pred cccc
Q 018205 104 TSKL 107 (359)
Q Consensus 104 ~~~~ 107 (359)
.+-.
T Consensus 84 ~~l~ 87 (171)
T PF14394_consen 84 KSLT 87 (171)
T ss_pred ceee
Confidence 6543
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=87.43 E-value=0.72 Score=40.78 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=46.2
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.|..++-+|-.. |++|+.|||+.+|+ +...+..+|+.|...|+++...+ .+..|+.-+-.
T Consensus 17 yEa~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~g------~P~~y~av~p~ 76 (247)
T COG1378 17 YEAKVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIEG------RPKKYRAVPPE 76 (247)
T ss_pred HHHHHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeCC------CCceEEeCCHH
Confidence 344445555443 79999999999999 78999999999999999998742 25678866543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.8 Score=44.34 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=55.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHC-------C-----CCeEEEeec-c---cccccC----------------------C-
Q 018205 194 GLGSLVDVGGGTGSFARIISEAF-------P-----GIKCTVLDL-P---HVVPKV----------------------P- 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a----------------------~- 234 (359)
+.-+|+|+|=|+|.-.....+.+ | .++++.+|. | +.+..+ .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999998555554333 3 468888886 2 111100 0
Q ss_pred ------CCC--CceEeeCCCCCC---CC-CccEEEEcchh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 235 ------DTD--NLKFIAGDMFQS---IP-PADAFFFKAIF-----HAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 235 ------~~~--~v~~~~~d~~~~---~p-~~D~i~~~~vl-----~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
... ++++..+|+.+. +. .+|++++-..- ..|+ ..+++++.++++| ||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~----~~~~~~l~~~~~~---~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWS----PNLFNALARLARP---GATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhcc----HHHHHHHHHHhCC---CCEEEEe
Confidence 012 334666777442 22 38888863211 1243 3489999999998 7766643
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=0.86 Score=40.03 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHhcccccCCCC--eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------------C--CCCceEee
Q 018205 182 NLIVKDCQPIFQGLG--SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------------D--TDNLKFIA 243 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------------~--~~~v~~~~ 243 (359)
+.+++... ++++. +|||.=+|.|..+..++.. +++++++|.+. +....+ . ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 35666665 55555 9999999999999999988 78899999854 332111 0 14677888
Q ss_pred CCCCC---CCC-CccEEEEc
Q 018205 244 GDMFQ---SIP-PADAFFFK 259 (359)
Q Consensus 244 ~d~~~---~~p-~~D~i~~~ 259 (359)
+|..+ ..+ .||+|++-
T Consensus 152 ~da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLD 171 (250)
T ss_pred CcHHHHHhhCCCCCcEEEEC
Confidence 87743 222 48888743
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.84 Score=36.45 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=36.7
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|++.|.. |..|..|||+++|+ +-...+-.|..|+..|.+.+.+
T Consensus 15 eILE~Lk~--G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLAD--GCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 34556643 78999999999999 5678889999999999999875
|
|
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=0.88 Score=32.09 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=36.9
Q ss_pred hhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 42 EVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 42 ~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.|... +.+++.+||..+++ +++.++.+|..|+.+|-+++..
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 455554 79999999999999 6899999999999999999874
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.6 Score=32.06 Aligned_cols=85 Identities=20% Similarity=0.324 Sum_probs=44.8
Q ss_pred CCCeEEEeCCCcch-HHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC----CccEEEEcchhccCCch
Q 018205 194 GLGSLVDVGGGTGS-FARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP----PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 194 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p----~~D~i~~~~vl~~~~~~ 268 (359)
...+|++||-|.=. .+..|.+. +..++++|+.+. .+ ..++.++.-|++++-. ++|+|.+.+- ..
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC-----Ch
Confidence 35699999999765 45555555 589999999443 22 2689999999988533 5888887553 33
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+...-+.++.+.. |.-++|..
T Consensus 82 El~~~il~lA~~v-----~adlii~p 102 (127)
T PF03686_consen 82 ELQPPILELAKKV-----GADLIIRP 102 (127)
T ss_dssp TSHHHHHHHHHHH-----T-EEEEE-
T ss_pred HHhHHHHHHHHHh-----CCCEEEEC
Confidence 4444555555554 34566544
|
; PDB: 2K4M_A. |
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=86.71 E-value=0.66 Score=30.26 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
.|.+.||+.+|+ ..+.+.+.++.|+..|++
T Consensus 26 pS~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 26 PSQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred cCHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 489999999999 689999999999999986
|
|
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=86.57 E-value=0.92 Score=32.01 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|+..++||+.+++ +...++.-+..|.++|||+.... ..+.|..|..+
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~------~s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPH------PSGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCC------CCCCCCcCHHH
Confidence 479999999999999 56889999999999999985321 03566666543
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.49 E-value=2.1 Score=37.27 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=68.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCCC------CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQSI------PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~~------p~~D~i~~~ 259 (359)
+.+..+||-+|+++|.....+...- |.--+++++.+. .+..|++..+|..+.-|...+. +-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 4678999999999999888877653 666788888732 4556677788888888885543 23677765
Q ss_pred chhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 260 AIFHAFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 260 ~vl~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.+ .++.+.+.-++...|++ ||.++|.-
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvisi 261 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVISI 261 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEEE
Confidence 222 33445566778889999 88888754
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.11 E-value=0.52 Score=44.37 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCC-C-CCC--ccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQ-S-IPP--ADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~-~p~--~D~i~~~~v 261 (359)
+...|||||.|||.++...++...+ ++++++. ..|.+.|+. .++|+++..-..+ . .|. +|+++.-.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4567999999999999999888744 6999998 447666652 5677776655433 1 222 666654333
Q ss_pred hccCCchHHHHHHHHHHHhc
Q 018205 262 FHAFVDEDCLKILKRCREAI 281 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L 281 (359)
.-.+--+-+..-++++++.|
T Consensus 145 dtEligeGalps~qhAh~~L 164 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDML 164 (636)
T ss_pred hhhhhccccchhHHHHHHHh
Confidence 32222222334556666555
|
|
| >PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.99 Score=37.22 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=39.3
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
-+|..+||+.+|+ +.+.+.|.++.|...++|.+.. .|.|.++|.
T Consensus 75 ~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~--------~G~Y~iNP~ 118 (165)
T PF05732_consen 75 VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR--------NGAYMINPN 118 (165)
T ss_pred EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc--------CCeEEECcH
Confidence 4589999999999 6799999999999999999875 589999985
|
; GO: 0006260 DNA replication, 0006276 plasmid maintenance |
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=85.98 E-value=1.2 Score=31.08 Aligned_cols=36 Identities=14% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+.|-++||+.+|+ ....+.+.|+.|...|+++..+
T Consensus 27 ~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 27 LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 48999999999999 6789999999999999999774
|
... |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=0.98 Score=37.71 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred CcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 39 DIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.++..|... +++.|..+||+.+++ +...+.++++-|+..|++++.... .|.. -..++|+.++.+.
T Consensus 59 ~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~---~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 59 MALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESD---NDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC---CCCCeeEEEECHHHHHHH
Confidence 344444432 357899999999999 679999999999999999987421 1111 1366777766544
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=85.60 E-value=1.3 Score=40.09 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC----CC-CccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS----IP-PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~----~p-~~D~i~~ 258 (359)
..+..+|||..++.|.=+..+++..+ ...+++.|++. -+...+ ....+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34578899999999999999999887 56899999943 333222 245667776776332 22 3898884
Q ss_pred ----cc--hhccCCc-------hH-------HHHHHHHHHHhc----ccCCCCcEEEEEeeecCCC
Q 018205 259 ----KA--IFHAFVD-------ED-------CLKILKRCREAI----ASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 259 ----~~--vl~~~~~-------~~-------~~~~L~~~~~~L----~p~~~gG~lli~~~~~~~~ 300 (359)
+. ++..-++ ++ -.++|+++.+.+ +| ||.++.........
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~~e 225 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLSPE 225 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHHGG
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHHHH
Confidence 22 1221111 11 137899999999 99 88888877665443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.30 E-value=0.87 Score=40.34 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=106.5
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccCCCCChhhHHhhhcC-----c
Q 018205 52 TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTD-----Q 126 (359)
Q Consensus 52 t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~-----~ 126 (359)
++-.|++...+ +.+.+..+++.|...|++.... +...+|..+..++..- .+.....+-|. .
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~---------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrg 101 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE---------GGVELTEKGEELAEEL--GIKKKYDYTCECCEGRG 101 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec---------CcEeehhhhHHHHHHh--CCCccccccccCcCCcc
Confidence 88889999988 6899999999999999999884 6688998887666421 22211111111 0
Q ss_pred ccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcc-cch-HHHHHhcccccCCCCeEEEeCCC
Q 018205 127 VFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDS-QLA-NLIVKDCQPIFQGLGSLVDVGGG 204 (359)
Q Consensus 127 ~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~-~~~-~~~~~~~~~~~~~~~~vlDvG~G 204 (359)
.....+..|-+.+ -++....|+-...|++....-. ... -.++..-. --.++.|+-+| -
T Consensus 102 i~l~~f~dll~kf-----------------~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RG--DL~gK~I~vvG-D 161 (354)
T COG1568 102 ISLQAFKDLLEKF-----------------REIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRG--DLEGKEIFVVG-D 161 (354)
T ss_pred ccchhHHHHHHHH-----------------HHHHhcCCCcchhcccccccccceeeeeeeecccc--CcCCCeEEEEc-C
Confidence 0011112222221 1222222222222222211100 000 01111111 12357899999 4
Q ss_pred cchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCCCC-----CccEEEEcchhccCCchHHHH
Q 018205 205 TGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQSIP-----PADAFFFKAIFHAFVDEDCLK 272 (359)
Q Consensus 205 ~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~~p-----~~D~i~~~~vl~~~~~~~~~~ 272 (359)
.-.++++++-..---++.++|+.+ .+.... ..++++.+..|..+++| .||+++.--. + +-+....
T Consensus 162 DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-e--Ti~alk~ 238 (354)
T COG1568 162 DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-E--TIKALKL 238 (354)
T ss_pred chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-h--hHHHHHH
Confidence 445555554432222799999965 554333 25779999999988888 3999875211 0 0122345
Q ss_pred HHHHHHHhccc
Q 018205 273 ILKRCREAIAS 283 (359)
Q Consensus 273 ~L~~~~~~L~p 283 (359)
+|.+=...|+.
T Consensus 239 FlgRGI~tLkg 249 (354)
T COG1568 239 FLGRGIATLKG 249 (354)
T ss_pred HHhccHHHhcC
Confidence 66666778875
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=84.86 E-value=5.7 Score=37.55 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=61.8
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEee---CC-CCC---C-CC--CccEEEEc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIA---GD-MFQ---S-IP--PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~---~d-~~~---~-~p--~~D~i~~~ 259 (359)
..+..+||.+|||. |..+..+++...-.+++++|.+ +..+.+++.....++. .+ +.+ . .+ .+|+|+-+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45568999999988 8899999998754368898874 3555544321222222 11 111 1 11 47887753
Q ss_pred c---------------hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 260 A---------------IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 260 ~---------------vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
- +|+..++. ...++++.+.|++ +|++++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcCC
Confidence 2 12222333 3478899999999 8999887643
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.85 Score=37.60 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=41.6
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
...+..|+..|.+ ++.+|..+||+++|+ .+..+.+=++.|...|+++.
T Consensus 13 D~~D~~IL~~Lq~-d~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQK-DGRISNVELSKRVGL---SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhcc-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEE
Confidence 3467788889987 489999999999999 57888999999999999974
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=84.60 E-value=5.2 Score=36.00 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=70.2
Q ss_pred eEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCCCCCceEeeCCCCC----C-CCCccEEEEcchhccCC---
Q 018205 197 SLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----S-IPPADAFFFKAIFHAFV--- 266 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~-~p~~D~i~~~~vl~~~~--- 266 (359)
+++|+-||.|.+...+.+.. . .+.++|+.. .++..+..-.-....+|+.+ . .+.+|+++.+.-...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999888763 4 467789844 55443321111256677744 1 34689999654322221
Q ss_pred -----chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 267 -----DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 267 -----~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
++....++.++.++++.. .-.++++|.+..-... . .....+.|.+.|++.||.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~------------------~--~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLTH------------------D--NGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhcc------------------C--chHHHHHHHHHHHhCCcE
Confidence 112223444444443321 1257887866432110 0 112456788888899988
Q ss_pred eeEE
Q 018205 342 HFKI 345 (359)
Q Consensus 342 ~~~~ 345 (359)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.51 E-value=1.3 Score=42.44 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
|.|.|.++|++++++ +.+.++++|+.|.+.|++.+.+ ++.|.+.+.
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~--------~g~~~l~rd 353 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE--------RGQWVLARD 353 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC--------CCceEecCC
Confidence 479999999999999 6899999999999999998654 466876653
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.39 E-value=1.4 Score=41.52 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=52.0
Q ss_pred CCCceEeeCCCCC---CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 236 TDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 236 ~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++|+++++++.+ ..| .+|.+++...+..+++++..+.++++.+.++| ||+|+.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 5899999999854 233 49999999999999999999999999999999 9999997765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.2 Score=37.88 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+.|+.|||+.+|++ ....+.+.|+.|...|+++...
T Consensus 24 ~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence 478999999999993 2789999999999999999883
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.97 E-value=3.5 Score=36.40 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=65.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC---CccEEEEcchhccCCch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP---PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~D~i~~~~vl~~~~~~ 268 (359)
+.+.+.-+|+|+-.|.++-.|.++ ++.++.+|-..|.+..-...+|+.+..|-|.-.| ..|-.+|-.| +
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------E 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------E 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------c
Confidence 457899999999999999999988 8899999987666666667889999999877444 3888887655 2
Q ss_pred HHHHHHHHHHHhccc
Q 018205 269 DCLKILKRCREAIAS 283 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p 283 (359)
+..++-+.+.++|..
T Consensus 281 kP~rv~~li~~Wl~n 295 (358)
T COG2933 281 KPARVAALIAKWLVN 295 (358)
T ss_pred CcHHHHHHHHHHHHc
Confidence 224466667777875
|
|
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.66 E-value=0.66 Score=40.08 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=47.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccCCCCChhhHH
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVV 120 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~ 120 (359)
+...-.|||+++|++ ...+...++-|+..|++++.+ .++|..|+.+..++.+.-+.++.+.
T Consensus 24 p~v~q~eIA~~lgiT---~QaVsehiK~Lv~eG~i~~~g--------R~~Y~iTkkG~e~l~~~~~dlr~f~ 84 (260)
T COG1497 24 PRVKQKEIAKKLGIT---LQAVSEHIKELVKEGLIEKEG--------RGEYEITKKGAEWLLEQLSDLRRFS 84 (260)
T ss_pred CCCCHHHHHHHcCCC---HHHHHHHHHHHHhccceeecC--------CeeEEEehhHHHHHHHHHHHHHHHH
Confidence 578999999999994 688999999999999999975 6899999988654444322344333
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.48 E-value=1.6 Score=40.48 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=35.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH 228 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 228 (359)
.++..+. .+.+...|+|+|.|.|.++..+.-.| +++|.++|-+.
T Consensus 143 elvSsi~-~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq 186 (476)
T KOG2651|consen 143 ELVSSIS-DFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQ 186 (476)
T ss_pred HHHHHHH-hhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccch
Confidence 3444443 25678899999999999999988777 88999999976
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=83.45 E-value=0.97 Score=36.76 Aligned_cols=47 Identities=9% Similarity=0.213 Sum_probs=40.4
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.+..|.+.|.. ++..|..+||+++|+ .+..+.+=++.|.+.|++..-
T Consensus 10 ~D~~Il~~Lq~-d~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALME-NARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 56678888877 489999999999999 578888899999999999743
|
|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=83.44 E-value=1.5 Score=33.36 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=33.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++|..+|++.+++ +...+.+.++.|+..|++.+..
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~ 77 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKER 77 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccC
Confidence 68999999999999 6899999999999999999764
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=83.34 E-value=4 Score=31.91 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=50.2
Q ss_pred CceEeeCCCCC---CC-CCccEEEEcchh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH
Q 018205 238 NLKFIAGDMFQ---SI-PPADAFFFKAIF-----HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308 (359)
Q Consensus 238 ~v~~~~~d~~~---~~-p~~D~i~~~~vl-----~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~ 308 (359)
.+++..+|+.+ .+ ..+|+|++-..- ..|+ ..++++++++++| ||.+....
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs----~e~~~~l~~~~~~---~~~l~Tys-------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWS----EELFKKLARLSKP---GGTLATYS-------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSS----HHHHHHHHHHEEE---EEEEEES---------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCC----HHHHHHHHHHhCC---CcEEEEee--------------
Confidence 45666677633 12 247877764321 2343 3499999999999 66554411
Q ss_pred HHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 309 AKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 309 ~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
+...+++.|.++||.+.+....++-..++.+.
T Consensus 91 ------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 91 ------------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp -------------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred ------------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 12337788999999998888777766666554
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=83.26 E-value=2.1 Score=34.07 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|++|.+|||-+.|+ ..+.+.--|.++++.|-|.+..
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~ 40 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVN 40 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEec
Confidence 89999999999999 5788899999999999999875
|
The region in question is approximately 150 amino acid residues long. |
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.12 E-value=1.3 Score=37.82 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=36.0
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
|.+++...+.+.|.+|+|+++|+ ..-..+|.|.+|++.|+++.+
T Consensus 163 i~~~~~~~~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAE 206 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEE
Confidence 34445433369999999999999 578899999999999999865
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=82.87 E-value=0.71 Score=34.86 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=32.7
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|++.|... +.++-++||+.+|+ +..-++++|..|...|++....
T Consensus 18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 56777653 68999999999999 6899999999999999997653
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=82.64 E-value=2.9 Score=28.25 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..+ |..+||+.+|+ +...+++.|+.|.+.|+++...
T Consensus 21 g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 21 GDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp TSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 3577 99999999999 6789999999999999998875
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=82.55 E-value=1.5 Score=38.96 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=39.0
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.+.|.+. +.++++|||+.+|+ .+..++|-|+.|.+.|++.+..
T Consensus 9 ~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 9 ILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 356677663 79999999999999 6789999999999999998875
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=82.55 E-value=8.4 Score=32.42 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeeccc-c-cccCCCCCCceEeeCCCCCC-C--C------C-ccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLPH-V-VPKVPDTDNLKFIAGDMFQS-I--P------P-ADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~~-~-~~~a~~~~~v~~~~~d~~~~-~--p------~-~D~i~ 257 (359)
++..|+++|.-.|.-+..++.. ....+++++|++- . -..|.+.++|.|+.++-.++ + + . --+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 4689999999998866665543 2347899999854 3 34455688999999998653 1 0 1 24556
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
|-..-|+. +.+.+.|+-...+|.- |..+++.|.+.++-.
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 66666655 4556678888888887 788888887776654
|
|
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=82.45 E-value=1.3 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=40.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+.|+..|... +|-.+.-||..+++ +...+...|+.|+.+|+|++..
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 44566667664 68899999999999 7899999999999999999985
|
|
| >PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus | Back alignment and domain information |
|---|
Probab=82.30 E-value=1.9 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=36.3
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
|...++. +..|.+||-+.+|+ +...+...|..|...|++++.
T Consensus 10 IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeee
Confidence 4445555 58999999999999 788999999999999999876
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.28 E-value=2.4 Score=40.74 Aligned_cols=129 Identities=21% Similarity=0.284 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC------
Q 018205 164 PDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD------ 235 (359)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------ 235 (359)
++..-.|+..|.+...+. ...-.. ......+|-||-|.|.+...+...+|..+++++++ |++++.|+.
T Consensus 268 ~~l~s~~h~~m~~g~aL~~n~~~~~----~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q 343 (482)
T KOG2352|consen 268 PELASQYHQMMIGGLALIMNRPPQK----LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ 343 (482)
T ss_pred cccCcchhhhhhccceeccccCchh----ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh
Confidence 445555666666655433 211122 23456788888888999999999999999999999 779999883
Q ss_pred CCCceEeeCCCCC----------CCCCccEEEE----cchhccCC--c--hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 236 TDNLKFIAGDMFQ----------SIPPADAFFF----KAIFHAFV--D--EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 236 ~~~v~~~~~d~~~----------~~p~~D~i~~----~~vl~~~~--~--~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+|..+.-.|-.+ ....||+++. .. -|-.. . --...+|..++.+|+| .|.++|.-...
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f~inlv~r 419 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPP---RGMFIINLVTR 419 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCc---cceEEEEEecC
Confidence 2334444333321 1224888774 22 22221 1 1245789999999999 67765554444
Q ss_pred CCC
Q 018205 298 NEK 300 (359)
Q Consensus 298 ~~~ 300 (359)
+..
T Consensus 420 ~~~ 422 (482)
T KOG2352|consen 420 NSS 422 (482)
T ss_pred Ccc
Confidence 433
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=82.23 E-value=1.7 Score=34.66 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=62.2
Q ss_pred eEEEeec-ccccccCCC-------CCCceEeeCCCC---CCCC--CccEEEEcchhccCC---------chHHHHHHHHH
Q 018205 220 KCTVLDL-PHVVPKVPD-------TDNLKFIAGDMF---QSIP--PADAFFFKAIFHAFV---------DEDCLKILKRC 277 (359)
Q Consensus 220 ~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~---~~~p--~~D~i~~~~vl~~~~---------~~~~~~~L~~~ 277 (359)
+|+++|+ ++.++..++ .++++++..+=. +.++ .+|+++++.- ++| .+...+.|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5889999 447776652 457888877542 2234 3888887533 233 22345789999
Q ss_pred HHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 278 REAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 278 ~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+.|+| ||.+.|+-+...+.+.. +.. ...+|.+-|....|.+.+...+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~~----------------av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ESE----------------AVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HHH----------------HHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HHH----------------HHHHHHHhCCcceEEEEEEEcc
Confidence 999999 89888888776665321 111 2344555556667777777666
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.3 Score=37.88 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=40.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeecccccccCC----CC---CCceEeeCCCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPHVVPKVP----DT---DNLKFIAGDMF 247 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~~~~~a~----~~---~~v~~~~~d~~ 247 (359)
+.+...++|+|||.|.++..+++.. +...++.+|....-..+. .. ..++-+..|+.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEee
Confidence 4567899999999999999999988 567899999843211221 11 35666666763
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=81.97 E-value=3.6 Score=36.34 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=50.7
Q ss_pred CCCeEEEeCCCcchHHHHH---HHHC--CCCeEEEeec----ccc-cc-cCC-------------------------C--
Q 018205 194 GLGSLVDVGGGTGSFARII---SEAF--PGIKCTVLDL----PHV-VP-KVP-------------------------D-- 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----~~~-~~-~a~-------------------------~-- 235 (359)
-+..|+|+||=.|..+..+ ++.+ ++.+++++|. |+. .+ ... .
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3589999999999866544 3333 4568999997 331 11 000 0
Q ss_pred --CCCceEeeCCCCCCCCC--ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 236 --TDNLKFIAGDMFQSIPP--ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 236 --~~~v~~~~~d~~~~~p~--~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+++.++.|.|.+.+|. .+-|-+-++=.++= +.....|..++..|.| ||.|++-|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~---GGiIi~DD 212 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ESTKDALEFLYPRLSP---GGIIIFDD 212 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccch-HHHHHHHHHHHhhcCC---CeEEEEeC
Confidence 35889999998554442 12222222211222 2345689999999999 56555533
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.8 Score=38.62 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=27.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VV 230 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~ 230 (359)
-..++|||+|||+|.-.+....+. ..++...|.+. ++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 356899999999999888877664 25677777743 55
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=81.54 E-value=1.3 Score=35.84 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=40.7
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+..|...|.+ +++.|..+||+++|+ ++..+.+-++-|...|++..-.
T Consensus 9 ~D~~IL~~L~~-d~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQE-DARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 45667788877 478999999999999 5788899999999999998653
|
|
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=81.21 E-value=2 Score=33.10 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+.|++|||+.+.+ ..+.++.+|+.|.+.|.|+...
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 5789999999999999999874
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=81.13 E-value=1.4 Score=42.62 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=43.3
Q ss_pred cchhcccCCCCCCHHHHHHhcC--CCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALE--INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
|+..|.+ ++++.-||++.++ + ....+.+.|+.|...|+++.... ....-.|++|+.++.+
T Consensus 376 IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~----~g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 376 ILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYR----KGRRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeec----CCCcEEEEECcHHHHH
Confidence 4444554 6899999999998 6 57899999999999999975310 0012348888876543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.22 E-value=4.9 Score=37.30 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=41.0
Q ss_pred cCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC----C----CCeEEEeeccc
Q 018205 162 KNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF----P----GIKCTVLDLPH 228 (359)
Q Consensus 162 ~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~~~ 228 (359)
..|+..+.|.+.+..+-. .+.+.+. .+.+..+|++|+|+|.++..+++.. | .+++..++++.
T Consensus 50 TApels~lFGella~~~~---~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 50 TAPELSQLFGELLAEQFL---QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred echhHHHHHHHHHHHHHH---HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 346676777665553221 2233333 3456789999999999887776543 4 56899999865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 5e-97 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 9e-94 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 7e-90 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 3e-84 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 3e-84 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 4e-84 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 3e-37 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 9e-37 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 3e-32 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 4e-31 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 8e-28 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-19 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 2e-18 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 6e-15 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 6e-13 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 3e-08 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 3e-08 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-06 |
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 431 bits (1110), Expect = e-152
Identities = 168/356 (47%), Positives = 241/356 (67%), Gaps = 8/356 (2%)
Query: 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEIN 63
I E+F+AQA L+K IY ++ S SLK AVE++IP +I HG+PI+L LVS L++
Sbjct: 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 64 PTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTL 123
+K + +LMR L H GFF +EEE+YALT+ S+L ++ CL+P+V +
Sbjct: 65 SSKIGNVRRLMRYLAHNGFFE------IITKEEESYALTVASELLVRGSDLCLAPMVECV 118
Query: 124 TDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANL 183
D H L +W + +L+ + G+ FWD++ KNP++N+ +N AMASDS+L NL
Sbjct: 119 LDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDAMASDSKLINL 177
Query: 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243
++DC +F GL S+VDVGGGTG+ A+II E FP +KC V D P VV + ++NL ++
Sbjct: 178 ALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVG 237
Query: 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
GDMF SIP ADA K I H + D+DCL+ILK+C+EA+ + G RGKV IID+VI++KK++
Sbjct: 238 GDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDE 297
Query: 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
Q+T+ KLL D+ M + G ER E+EW+KLF++AGF H+KI+P+ G SLIE+YP
Sbjct: 298 NQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 425 bits (1094), Expect = e-149
Identities = 167/358 (46%), Positives = 236/358 (65%), Gaps = 6/358 (1%)
Query: 7 EGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTK 66
E++ AQ HL+K +YN+VSS +LK A+EL I + IH HG+P+TL +L S+L+++P+K
Sbjct: 2 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK 61
Query: 67 ADGLFKLMRLLVHTGFFSTANVQSAQQQE--EEAYALTLTSKLFLKDKPYCLSPVVLTLT 124
+ L + +RLL H GFF+ V+ + E E AY+LT SKL + KP CLS +V
Sbjct: 62 VNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGAL 121
Query: 125 DQVFVNPCHFLSRWFR-DNELSAYETANDGTVFWDYMAKNPDFNS--IYNQAMASDSQLA 181
++ +WF D E + +E A G FWD++ K+ + ++ ++ AMASDS++
Sbjct: 122 HPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKDSESSTLSMFQDAMASDSRMF 180
Query: 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKF 241
L++++ + +F+GL SLVDVGGGTG ++I E FP +KCTV D P VV + +NL F
Sbjct: 181 KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNF 240
Query: 242 IAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301
+ GDMF+SIP ADA K + H + DE LKILK +EAI+ +G GKVIIIDI I+E
Sbjct: 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300
Query: 302 EDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+D LTE +L YD++M+ G ERT++EWEKL DAGFS +KITP+ G KSLIEVYP
Sbjct: 301 DDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 397 bits (1022), Expect = e-138
Identities = 93/365 (25%), Positives = 167/365 (45%), Gaps = 12/365 (3%)
Query: 2 DPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVS 58
+ I + A + N V L A++L++ E+I K P ++ ++ S
Sbjct: 11 NQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIAS 70
Query: 59 ALEINPTK---ADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKP-Y 114
L + + L +++RLL ++ E Y L++ K + D+
Sbjct: 71 KLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRG 130
Query: 115 CLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174
L+ L + D ++ ++ + G +++M K+ N I+N++M
Sbjct: 131 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSM 189
Query: 175 ASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP 234
+ + F+G+ +LVDVGGG+G +I +P IK DLP V+ P
Sbjct: 190 VDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
Query: 235 DTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294
++ + GDMF S+P DA KA+ H + DE C++ L C +A+ GKVII++
Sbjct: 250 PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVE 306
Query: 295 IVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKIT-PVYGIKS 353
++ E+ ++ ++ D LM + V G ERTEK++EKL +GFS F++ +
Sbjct: 307 FILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLG 366
Query: 354 LIEVY 358
++E Y
Sbjct: 367 VMEFY 371
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 392 bits (1010), Expect = e-137
Identities = 86/362 (23%), Positives = 148/362 (40%), Gaps = 29/362 (8%)
Query: 3 PIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEI 62
P + G + ++ L++ Y + +L+ A + + + + P T +L +A
Sbjct: 10 PSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV--DGPRTPAELAAATGT 67
Query: 63 NPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLT 122
+ D L +++RLL + + +ALT D P +L
Sbjct: 68 DA---DALRRVLRLLAVRDVVR---------ESDGRFALTDKGAALRSDSPVPARAGILM 115
Query: 123 LTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLAN 182
TD +F H ++ A+ G+ Y + + ++Y + M + S +
Sbjct: 116 FTDTMFWTMSHRVASALGPER-PAFADIF-GSSLDAYFDGDAEVEALYYEGMETVSAAEH 173
Query: 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-----TD 237
LI+ F G++ DVGGG G F + PG++ +LD VV +
Sbjct: 174 LILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAG 232
Query: 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297
K + GD + +P AD K I H + DED ++IL CR + + G+V++ID V+
Sbjct: 233 RWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVV 289
Query: 298 NEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357
E + Q D +M+ A G ERT E E LF AG ++ + S+
Sbjct: 290 PEGNDAHQSK----EMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVG 345
Query: 358 YP 359
P
Sbjct: 346 VP 347
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 391 bits (1005), Expect = e-136
Identities = 105/354 (29%), Positives = 171/354 (48%), Gaps = 11/354 (3%)
Query: 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVSALEI-NPTK 66
EA ++ V +LK A+ELD+ E++ K P I+ ++ + L NP
Sbjct: 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEA 76
Query: 67 ADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKP-YCLSPVVLTLTD 125
L +++RLL + + + E Y L K K++ L+P +L TD
Sbjct: 77 PVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATD 136
Query: 126 QVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIV 185
+V + P +L + + A G +DY + N ++N+ M+S+S + +
Sbjct: 137 KVLLEPWFYLKDAILEGG-IPFNKAY-GMNIFDYHGTDHRINKVFNKGMSSNSTITMKKI 194
Query: 186 KDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGD 245
+ F+GL ++VDVGGGTG+ A +I +P I DLPHV+ P ++ + GD
Sbjct: 195 LEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGD 254
Query: 246 MFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ 305
MF +P DA F K I H + DE CLK+LK C A+ D GKVI+ + ++ + +
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAAL---PDHGKVIVAEYILPPSPDPSI 311
Query: 306 LTEAKLLYDMLMMVA-VRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358
T+ + D LM+ G ERTEKE++ L + +GF FK+ ++E
Sbjct: 312 ATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-133
Identities = 94/364 (25%), Positives = 167/364 (45%), Gaps = 11/364 (3%)
Query: 1 MDPIQNEGAKEMFE-AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHK-HGRPITLPQLVS 58
M + A E A ++ + V +LK A+EL + E++ G+ +T ++ +
Sbjct: 5 MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAA 64
Query: 59 AL--EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKP-YC 115
L NP D + +++RLL + + + +Y K ++
Sbjct: 65 KLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVS 124
Query: 116 LSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA 175
++ + L D+V + ++L D + A G ++Y +P FN ++N+ M
Sbjct: 125 MAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAY-GMSAFEYHGTDPRFNRVFNEGMK 182
Query: 176 SDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD 235
+ S + + + F+GLG+LVDVGGG G+ I+ +P IK DLPHV+ + P
Sbjct: 183 NHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ 242
Query: 236 TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295
+ + GDMF+ +P D K I H + D+ C +LK C +A+ + GKV+++
Sbjct: 243 FPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQC 299
Query: 296 VINEKKEDAQLTEAKLLYDMLMMV-AVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSL 354
++ E ++ DM+M+ G ER E+E++ L AGF+ K T +Y
Sbjct: 300 ILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWA 359
Query: 355 IEVY 358
IE
Sbjct: 360 IEFT 363
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 377 bits (969), Expect = e-130
Identities = 93/364 (25%), Positives = 164/364 (45%), Gaps = 32/364 (8%)
Query: 5 QNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINP 64
+N G A+ + I+ + ++ AVEL +PE++ + P T L A +
Sbjct: 28 ENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG--PRTATALAEATGAHE 85
Query: 65 TKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLT 124
L +L+RLL G F ++ +A S + L D ++
Sbjct: 86 ---QTLRRLLRLLATVGVFD-------DLGHDDLFAQNALSAVLLPDPASPVATDARFQA 135
Query: 125 DQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLI 184
L+ R E ++++ AN GT FW ++P ++N+AM S S
Sbjct: 136 APWHWRAWEQLTHSVRTGE-ASFDVAN-GTSFWQLTHEDPKARELFNRAMGSVSLTEAGQ 193
Query: 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TD 237
V F G + VD+GGG GS + +AFPG++ T+L+ P V + + D
Sbjct: 194 VAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLAD 252
Query: 238 NLKFIAGDMFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296
+ + GD F++IP AD + K + H + D+D ++IL+R A+ ++++ID +
Sbjct: 253 RCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAM---KPDSRLLVIDNL 309
Query: 297 INEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY-GIKSLI 355
I+E+ + L D+L++V V G+ER+E E+ L +G + P G ++
Sbjct: 310 IDERPAAST-----LFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIV 364
Query: 356 EVYP 359
E+
Sbjct: 365 EIRR 368
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-125
Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 35/355 (9%)
Query: 13 FEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFK 72
A +L +++ S + A L + ++I + L +A+ + + + +
Sbjct: 6 LAAARNLIQVVTGEWKSRCVYVATRLGLADLIESG--IDSDETLAAAVGSDA---ERIHR 60
Query: 73 LMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPC 132
LMRLLV F + YA T TS L L+D +VL + F
Sbjct: 61 LMRLLVAFEIFQ--------GDTRDGYANTPTSHL-LRDVEGSFRDMVLFYGE-EFHAAW 110
Query: 133 HFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIF 192
+E A G F+ Y+ + PD + AM + + + I + F
Sbjct: 111 TPACEALLSGT-PGFELAF-GEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD--F 166
Query: 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGD 245
+G S VDVGGG+G + I +A P + +LD + D + + + GD
Sbjct: 167 RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225
Query: 246 MFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA 304
M Q +P D + I + L++L CREA+ G+V++I+ I+ +
Sbjct: 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAM---AGDGRVVVIERTISASEPS- 281
Query: 305 QLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
+L+D+ + +A G RT +E L GF+ +I + +I
Sbjct: 282 ---PMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 356 bits (915), Expect = e-123
Identities = 76/355 (21%), Positives = 137/355 (38%), Gaps = 36/355 (10%)
Query: 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKL 73
A + + + + +++ A L + + I T ++ SA + D L +L
Sbjct: 4 RAAHIGLRALADLATPMAVRVAATLRVADHIAAG--HRTAAEIASAAGAHA---DSLDRL 58
Query: 74 MRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPC- 132
+R LV G F+ + + Y LT + D + + +
Sbjct: 59 LRHLVAVGLFT--------RDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGF 110
Query: 133 HFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIF 192
L+ R + AY GT FW+ + +P ++ ++ M+ +L + +
Sbjct: 111 VELAHSIRTGQ-PAYPVRY-GTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-W 167
Query: 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGD 245
LG +VDVGGG+G + A + TVLDL + + + G
Sbjct: 168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGS 227
Query: 246 MFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA 304
F +P A + A+ H + D + IL+RC EA G G V++I+ V ++
Sbjct: 228 FFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA---GSGGVVLVIEAVAGDEH--- 281
Query: 305 QLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359
A D+ M+ G ER+ E +L AG + P+ S++E+
Sbjct: 282 ----AGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 352 bits (906), Expect = e-121
Identities = 77/373 (20%), Positives = 138/373 (36%), Gaps = 36/373 (9%)
Query: 1 MDPIQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL 60
A+ + + + ++ A L + + I T+ L +
Sbjct: 5 STAEPTVAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAART 62
Query: 61 EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSP-V 119
+ P + L +L+R LV G + + T +L D P
Sbjct: 63 DTRP---EALLRLIRHLVAIGLLE--------EDAPGEFVPTEVGELLADDHPAAQRAWH 111
Query: 120 VLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQ 179
LT L R YE+ G F++ +A PD + ++ +A D
Sbjct: 112 DLTQAVARADISFTRLPDAIRTGR-PTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQD 169
Query: 180 LANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD---- 235
+A + + ++DVGGG G FA I+ P + TVL++ V
Sbjct: 170 VAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKD 228
Query: 236 ---TDNLKFIAGDMFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVI 291
+D + + GD F+ +P ADA + + D D ++IL RC EA+ G+++
Sbjct: 229 EGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRIL 285
Query: 292 IIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYG- 350
I + + E D+ M+V + G+ RT ++W+ L AG ++ +
Sbjct: 286 IHERDDL---HENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSP 342
Query: 351 ----IKSLIEVYP 359
SL+ + P
Sbjct: 343 TIPYDLSLLVLAP 355
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 353 bits (907), Expect = e-121
Identities = 73/368 (19%), Positives = 127/368 (34%), Gaps = 33/368 (8%)
Query: 6 NEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPT 65
E + + L K + N V+ +L+ A L + + + TL L + +P
Sbjct: 7 GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHP- 63
Query: 66 KADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSP-VVLTLT 124
L +L+R L G +++ T L P + L
Sbjct: 64 --QALSRLVRHLTVVGVLE------GGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGA 115
Query: 125 DQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLI 184
L R AY G FW+ ++ + ++ M+ D LA
Sbjct: 116 VSHADLAFTGLLDVVRTGR-PAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEA 173
Query: 185 VKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TD 237
D + + ++DVGGG G I+ P ++ T+++L + D
Sbjct: 174 PADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLAD 232
Query: 238 NLKFIAGDMFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296
+ GD F+ +P AD + + DED L IL+ C A+ G+++++D
Sbjct: 233 RVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRA 289
Query: 297 INEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIK---- 352
E + L D+ M+ + G RT E L AG +
Sbjct: 290 DVEGDGADRFFST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFD 347
Query: 353 -SLIEVYP 359
S++E
Sbjct: 348 FSILEFTA 355
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-113
Identities = 62/361 (17%), Positives = 139/361 (38%), Gaps = 35/361 (9%)
Query: 9 AKEMFEAQAHLFKIIYN-YVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKA 67
++ ++++ + + +K A+ELD+ + P L L + P
Sbjct: 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMA--EGPKDLATLAADTGSVP--- 78
Query: 68 DGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQV 127
L L+ L + E+ ++LT + P +
Sbjct: 79 PRLEMLLETLRQMRVIN---------LEDGKWSLTEFADYMFSPTPKEPNLHQT-----P 124
Query: 128 FVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQL-ANLIVK 186
FL+ F A + Y + N + + S+++ L+++
Sbjct: 125 VAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE 184
Query: 187 DCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNL 239
+ + G+ ++DVGGG G + + + FP + T+L+LP + V + D +
Sbjct: 185 EAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRM 242
Query: 240 KFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298
+ IA D+++ S P ADA F I ++ ++ + K+ +A+ G+++I+D+VI+
Sbjct: 243 RGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR---SGGRLLILDMVID 299
Query: 299 EKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358
+ + + + M +V + + ++++ G+ + Y + V
Sbjct: 300 DPENPNFDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVK 358
Query: 359 P 359
P
Sbjct: 359 P 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 3e-95
Identities = 68/355 (19%), Positives = 127/355 (35%), Gaps = 44/355 (12%)
Query: 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLM 74
+ A F + Y S ++K AVEL++ I + + L + + G+ L
Sbjct: 6 SPALFFNTVNAYQRSAAIKAAVELNVFTAISQG--IESSQSLAQKCQTSE---RGMRMLC 60
Query: 75 RLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL-KDKPYCLSPVVLTLTDQVFVNPCH 133
LV GF ++ E Y LT S +FL + + + + L + N +
Sbjct: 61 DYLVIIGFM---------TKQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFN 111
Query: 134 FLSRWFRDNELSAYETANDGTVFWDY--MAKNPDFNSIYNQAMASDSQL-ANLIVKDCQP 190
L+ GT ++ + +AM+ A LI +
Sbjct: 112 DLTAAVL----------KGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNE 161
Query: 191 IFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIA 243
++D+ G F +++ P + +D V+ + IA
Sbjct: 162 NKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIA 221
Query: 244 GDMFQSIPP--ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301
G F+ D H F C ++L++ + A+A GKVI+ D + N +
Sbjct: 222 GSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA---VEGKVIVFDFIPNSDR 278
Query: 302 EDAQLTEAKLLYDMLMMVAVR-GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLI 355
+ ++M+ G T E+E +F +AGFSH ++ + + +
Sbjct: 279 ITPPDA---AAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 6e-93
Identities = 51/359 (14%), Positives = 116/359 (32%), Gaps = 33/359 (9%)
Query: 13 FEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFK 72
EAQ +I + V + ++ I +++ TL ++ +
Sbjct: 13 AEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTR---YAAQV 69
Query: 73 LMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPC 132
L+ + G EE+ Y L L DK + V + V
Sbjct: 70 LLEASLTIGTI---------LLEEDRYVLAKAGWFLLNDKM---ARVNMEFNHDVNYQGL 117
Query: 133 HFLSRWFRDNELSAYETANDGTVFWDYMAKNPD-FNSIYNQAMASDSQLANLIVKDCQPI 191
L + + + ++ +++ P+ + S + +
Sbjct: 118 FHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF- 176
Query: 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAG 244
L+D+GG TG +A + ++ T++DLP + + ++ +
Sbjct: 177 SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGA 236
Query: 245 DMFQSIPP----ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300
++ P DA + F +E+ + IL R ++I KV I++ + + +
Sbjct: 237 NLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG---KDSKVYIMETLWDRQ 293
Query: 301 KEDAQLTEAKLLY-DMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIK-SLIEV 357
+ + + M + + +AG +I G+ S+++
Sbjct: 294 RYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 268 bits (687), Expect = 4e-88
Identities = 57/362 (15%), Positives = 116/362 (32%), Gaps = 49/362 (13%)
Query: 10 KEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADG 69
K + L K+ Y S L AV + ++ T ++ ++ +
Sbjct: 19 KAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT---GRTPAEVAASFGMVE---GK 72
Query: 70 LFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL-KDKPYCLSPVVLTLTDQVF 128
L+ L G +E +A+ T ++ +L + P+V +
Sbjct: 73 AAILLHALAALGLL---------TKEGDAFRNTALTERYLTTTSADYIGPIVEH--QYLQ 121
Query: 129 VNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDC 188
+ L R + A + +N AM SQ +V +
Sbjct: 122 WDNWPRLGEILRSEK-------PLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSEL 174
Query: 189 QPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDT-------DNLKF 241
F +++D+ GG G++ + P + + DLP T ++F
Sbjct: 175 GV-FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEF 233
Query: 242 IAGDMFQSIPP----ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297
++ + AD H F + +++ + G ++I+ + +
Sbjct: 234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK---PGGALLILTMTM 290
Query: 298 NEKKEDAQLTEAKLLYDMLMMVAVR-GSERTEKEWEKLFLDAGF-----SHFKITPVYGI 351
N+ + L+ + + MMV G + DAG S + T + G
Sbjct: 291 NDDRVTPALS---ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQ 347
Query: 352 KS 353
+S
Sbjct: 348 RS 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 7e-09
Identities = 55/386 (14%), Positives = 103/386 (26%), Gaps = 137/386 (35%)
Query: 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEI-----NPTKADGL 70
Q L++I N+ S + ++L I + + R + + L + N +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA- 261
Query: 71 FKLM-RLLVHTGFFSTANVQSAQQQEE-----------EAYALTLTSKLFLKDKPYCLSP 118
F L ++L+ T F + SA +L K +L +P L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPR 320
Query: 119 VVLTLTDQVFVNPCH----------FLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNS 168
VLT NP L+ W DN W ++ +
Sbjct: 321 EVLT------TNPRRLSIIAESIRDGLATW--DN--------------WKHVNCD----- 353
Query: 169 IYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH 228
+S L L + + +F L + FP
Sbjct: 354 --KLTTIIESSLNVLEPAEYRKMFDRLS---------------V---FP----------- 382
Query: 229 VVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRC--REAIASRGD 286
+ IP I+ + D + ++ + + +
Sbjct: 383 --------PSAH---------IPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 287 RGKVIIIDIVINEKKEDAQLTE--AKLL--YDMLM-----------------------MV 319
+ I I + K + ++ Y++ +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 320 AVRGSERTEKEWEKLFLDAGFSHFKI 345
+ ER + +FLD F KI
Sbjct: 483 NIEHPERMT-LFRMVFLDFRFLEQKI 507
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-07
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 23/153 (15%)
Query: 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPK----VPDTDNLKFIAGDMFQSIP 251
+D G G G + + + + H++ + + KFI M +
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL 154
Query: 252 PA---DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308
P D + D D +K K C++A+ I + E
Sbjct: 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT----PNGYIFFKENCSTGDRFLVDKE 210
Query: 309 AKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341
L R++ +++LF ++G
Sbjct: 211 DSSLT------------RSDIHYKRLFNESGVR 231
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-07
Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 27/220 (12%)
Query: 156 FWDYMAKNPD-FNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISE 214
+D A D F + I++D + G++++ G GTG+ +
Sbjct: 8 LFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVN--KSFGNVLEFGVGTGNLTNKLLL 65
Query: 215 AFPGIKCTVLD-----LPHVVPKVPDTDNLKFIAGDMFQSIPPADAF---FFKAIFHAFV 266
A G ++ K+P GD S + FH
Sbjct: 66 A--GRTVYGIEPSREMRMIAKEKLP--KEFSITEGDF-LSFEVPTSIDTIVSTYAFHHLT 120
Query: 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326
D++ + + + + GK++ D + ++ + EA + +E
Sbjct: 121 DDEKNVAIAKYSQLLN---KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEY 177
Query: 327 --TEKEWEKLFLDAGFS------HFKITPVYGIKSLIEVY 358
+ +F + GF + + + K L +
Sbjct: 178 YTRIPVMQTIFENNGFHVTFTRLNHFVWVMEATKQLEHHH 217
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 36/179 (20%)
Query: 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLD-----LPHVVPKVPDTDNLKFIAGDMFQSI 250
++D+G GTG + + E +P T++D L + +K+I D +
Sbjct: 46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD 105
Query: 251 PP--ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE 308
D H DED ++ KR + + G I D+V E
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILK---ESGIFINADLVHGET------AF 156
Query: 309 AKLLYDMLMMVAVRGSERTEKEWE------------------KLFLDAGFSHFKITPVY 349
+ L + V S TE+E +AGF ++ +Y
Sbjct: 157 IENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRD--VSCIY 213
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 32/171 (18%)
Query: 196 GSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMF 247
G+ +D+G G G+ + +++ LD H+ D ++ + GD
Sbjct: 45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD-V 102
Query: 248 QSIPPADAFF-----FKAIFHAFVDEDCLKILKRCREAIASRGDR-----GKVIIIDIVI 297
+IP D + ++F ED + R GK I
Sbjct: 103 HNIPIEDNYADLIVSRGSVFFW---EDVATAFREIY--------RILKSGGKTYIGGGFG 151
Query: 298 NEKKEDAQLTE-AKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347
N++ D+ E + D S+ + ++ + + G S ++I
Sbjct: 152 NKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIIL 202
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-06
Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 35/203 (17%)
Query: 156 FWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA 215
++ A ++++ + M S + A ++ G ++++ GTG + R +S
Sbjct: 14 YYRARA--SEYDATFVPYMDSAAPAALERLRAGNIR----GDVLELASGTGYWTRHLSGL 67
Query: 216 FPGIKCTVLDLPHVVPKVPD---------TDNLKFIAGDMFQSIPPADAF---FFKAIFH 263
+ T LD + DN++F D+F P + FF
Sbjct: 68 --ADRVTALDG------SAEMIAEAGRHGLDNVEFRQQDLFD-WTPDRQWDAVFFAHWLA 118
Query: 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG 323
D+ + R A+A G V +D+ +E++ + Q + + R
Sbjct: 119 HVPDDRFEAFWESVRSAVA---PGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRS 175
Query: 324 SE-----RTEKEWEKLFLDAGFS 341
R+ E + G+S
Sbjct: 176 FRIVKVFRSPAELTERLTALGWS 198
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 7e-06
Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 38/181 (20%)
Query: 175 ASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVV--- 230
+S L + + P G +D G G G + + + ++D+ +
Sbjct: 62 SSRKFLQRFLRE--GPNKTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQA 118
Query: 231 ---PKVPDTDNLKFIAGDMFQSIPPADAF---FFKAIFHAFVDEDCLKILKRCREAIASR 284
+ + P D++ + + + D+ + L+RC+ ++
Sbjct: 119 KTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR-- 176
Query: 285 GDRGKVIIIDIVINEK----KEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340
G ++I D + E D+ + R ++ AG
Sbjct: 177 -PNGIIVIKDNMAQEGVILDDVDSSVC------------------RDLDVVRRIICSAGL 217
Query: 341 S 341
S
Sbjct: 218 S 218
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 19/145 (13%)
Query: 165 DFNSIYNQAMASDS---QLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKC 221
F IY++ + +D + ++ I++ C +D+ GTG+ +
Sbjct: 5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNT 62
Query: 222 TVLD-----LPHVVPKVPDTD-NLKFIAGDM--FQSIPPADAF--FFKAIFHAFVDEDCL 271
+D L K + D+ D + + +D
Sbjct: 63 WAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLK 122
Query: 272 KILKRCREAIASRGDRGKVIIIDIV 296
K K + G V I DI
Sbjct: 123 KYFKAVSNHLKEGG----VFIFDIN 143
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 32/169 (18%), Positives = 68/169 (40%), Gaps = 27/169 (15%)
Query: 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKV------PDTDNLKFIAGDMFQS 249
+++ G G G+ I+++ P + T +D+ P + K N+KF+ + S
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQAN-IFS 98
Query: 250 IPPADAFFFKAIFHAFVDE---DCLKILKRCREAIASRGDR-----GKVIIIDIVINEKK 301
+P D+ F IF FV E + LK + + G + +I+
Sbjct: 99 LPFEDS-SFDHIFVCFVLEHLQSPEEALKSLK--------KVLKPGGTITVIEGDHGSCY 149
Query: 302 EDAQLTEAKLLYDML--MMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348
+ +A ++ L + ++G+ ++ L ++GF ++ P
Sbjct: 150 FHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 21/204 (10%)
Query: 156 FWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA 215
+ + YN + +V+ P F+ G+L+++G G F + E
Sbjct: 8 YDQEIKDTAGHKYAYN---FDFDVMHPFMVRAFTPFFRP-GNLLELGSFKGDFTSRLQEH 63
Query: 216 FPGIKCTVLDL-PHVVP--KVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDE---D 269
T ++ + + D + +I + P + I V E D
Sbjct: 64 --FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRR---YDNIVLTHVLEHIDD 118
Query: 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER--- 326
+ +LKR + + G G++ ++ N + + ++ + A
Sbjct: 119 PVALLKRINDDWLAEG--GRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCT 176
Query: 327 -TEKEWEKLFLDAGFSHFKITPVY 349
E+ AG + ++
Sbjct: 177 YALDTLERDASRAGLQVTYRSGIF 200
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 41/209 (19%)
Query: 156 FWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLV-DVGGGTGSFARIISE 214
WD A+ + NS S S + + + + V DVG G G +S
Sbjct: 19 KWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKK-----EAEVLDVGCGDGYGTYKLSR 73
Query: 215 AFPGIKCTVLDL-PHVVP---KVPDTDNLKFIAGDMFQSIPPADAFF-----FKAIFHAF 265
G K +D+ ++ + + +L FI GD+ S+P + F ++
Sbjct: 74 T--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLEWT- 129
Query: 266 VDEDCLKILKRCREAIASRGDR-----GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320
E+ L+ L + R G I + K + LY ++
Sbjct: 130 --EEPLRALNEIK--------RVLKSDGYACIAILGPTAKPRENSYPR---LYGKDVVC- 175
Query: 321 VRGSERTEKEWEKLFLDAGFSHFKITPVY 349
+ E+E+L + GF VY
Sbjct: 176 ---NTMMPWEFEQLVKEQGFKVVDGIGVY 201
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 27/172 (15%)
Query: 197 SLVDVGGGTGSFARIISE-AFPGIKCTVLDL-PHVV-------PKVPDTDNLKFIAGDMF 247
+ V G S + A PG++ +D P + + D
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA- 179
Query: 248 QSIPPADAFF----FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV-INEKKE 302
+ + + + D ++ +R +A+ G ++ +
Sbjct: 180 WKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGG---ALVTSFLTPPPALSP 236
Query: 303 DAQLTEAKLLYDMLMMVAVRGSE---------RTEKEWEKLFLDAGFSHFKI 345
D+ + L + + + RT + +AGF+ +
Sbjct: 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRF 288
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 22/169 (13%)
Query: 148 ETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGS 207
+ + V D+ + Y + D+ + + G ++++ G G
Sbjct: 39 ASVGERGVLCDFY--DEGAADTYRDLIQ-DADGTSEAREFATRTGPVSGPVLELAAGMGR 95
Query: 208 FARIISEAFPGIKCTVLDL-PHVV---------PKVPDTDNLKFIAGDM--FQSIPPADA 255
+ G + T L+L V+ D + GDM F
Sbjct: 96 LTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGT 153
Query: 256 -FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303
+ + D + RE + G ++ + ++E E
Sbjct: 154 VVISSGSINELDEADRRGLYASVREHLEPGG----KFLLSLAMSEAAES 198
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 22/172 (12%)
Query: 153 GTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARII 212
G ++ A ++ Y + A+ I + SL+DV GTG+
Sbjct: 1 GHMYEVDHAD--VYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHF 58
Query: 213 SEAFPGIKCTVLD-----LPHVVPKVPDTDNLKFIAGDMFQSIPPADAF-----FFKAIF 262
++ L+ L H ++PD GDM + F F ++
Sbjct: 59 TKE--FGDTAGLELSEDMLTHARKRLPD---ATLHQGDM-RDFRLGRKFSAVVSMFSSVG 112
Query: 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYD 314
+ E+ + E + G V++++ + A ++
Sbjct: 113 YLKTTEELGAAVASFAEHLEPGG----VVVVEPWWFPETFADGWVSADVVRR 160
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-04
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 29/165 (17%)
Query: 197 SLVDVGGGTGSFARIISEAFPGIKCTVLD-----LPHVVPKVPDT--DNLKFIAGDMFQS 249
++DV G G A + K D L + ++++ GD +
Sbjct: 40 EVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQ 96
Query: 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDR-----GKVIIIDIVINEKKEDA 304
+P D F + EA R G+++++D E
Sbjct: 97 MPFTDERF-HIVTCRIAAHHFPNPASFVSEAY-----RVLKKGGQLLLVDNSAPENDA-- 148
Query: 305 QLTEAKLLYDMLMMVAVRGSER--TEKEWEKLFLDAGFSHFKITP 347
+ Y+ + R + +W K+ +AGF ++
Sbjct: 149 ----FDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC 189
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 35/161 (21%)
Query: 198 LVDVGGGTGSFARIISEAFPGIKCTVLDL--PHV------VPKVPDTDNLKFIAGDMFQS 249
++DVG G G A ++ A ++ T + + P V + + F D
Sbjct: 65 VLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYAD-AMD 122
Query: 250 IPPADAFF-----FKAIFHA-----FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299
+P DA F +++ H + E ++L+ G V I D V+
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGRALRE-MARVLR----------PGGTVAIADFVLLA 171
Query: 300 KKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340
E A+ ++++ E+E A
Sbjct: 172 PVEGAKKEAVDAFRAGGGVLSL----GGIDEYESDVRQAEL 208
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 9e-04
Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 44/164 (26%)
Query: 198 LVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVV-------PKVPDTDNLKFIAGDMFQS 249
+D+G G G AR + F G+ L++ P + DN+ G F
Sbjct: 86 GLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS-FLE 143
Query: 250 IPPADAFF-----FKAIFH-----AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299
IP D + A H E C ++LK RG + I D + +
Sbjct: 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQE-CARVLK----------PRGVMAITDPMKED 192
Query: 300 ---KKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340
K + + L+DM + + L + G
Sbjct: 193 GIDKSSIQPILDRIKLHDM----------GSLGLYRSLAKECGL 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.81 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.74 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.73 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.73 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.73 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.72 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.72 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.72 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.71 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.69 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.69 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.68 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.68 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.68 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.68 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.68 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.68 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.67 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.67 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.67 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.67 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.66 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.66 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.66 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.66 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.66 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.66 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.66 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.66 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.65 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.65 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.64 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.64 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.64 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.64 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.63 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.62 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.61 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.61 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.6 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.59 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.58 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.58 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.57 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.56 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.56 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.56 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.55 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.52 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.52 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.48 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.48 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.47 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.46 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.46 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.45 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.45 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.44 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.42 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.42 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.41 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.41 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.41 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.4 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.39 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.37 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.37 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.35 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.34 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.34 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.33 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.33 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.32 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.31 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.29 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.29 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.28 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.27 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.27 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.27 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.27 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.27 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.26 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.25 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.25 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.24 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.24 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.24 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.23 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.23 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.23 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.23 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.22 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.22 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.21 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.21 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.2 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.2 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.19 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.19 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.19 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.18 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.18 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.17 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.16 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.15 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.14 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.13 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.13 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.12 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.12 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.11 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.11 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.11 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.11 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.09 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.09 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.08 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.08 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.08 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.08 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.07 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.07 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.07 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.06 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.05 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.05 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.05 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.05 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.05 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.05 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.04 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.04 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.03 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.03 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.02 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.02 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.02 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.02 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.02 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.0 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.0 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.0 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.99 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.99 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.99 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.98 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.98 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.96 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.94 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.94 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.94 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.92 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.92 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.91 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.9 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.9 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.9 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.9 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.89 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.88 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.87 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.86 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.86 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.86 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.85 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.85 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.84 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.84 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.84 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.83 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.83 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.82 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.82 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.82 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.81 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.8 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.8 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.79 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.79 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.79 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.78 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.76 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.75 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.74 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.71 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.68 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.67 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.66 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.63 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.62 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.59 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.59 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.54 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.53 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.5 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.46 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.46 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.45 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.43 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.42 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.37 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.37 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.36 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.35 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.33 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.32 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.3 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.3 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.3 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.3 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.28 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.27 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.25 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.23 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.21 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.19 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.18 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.18 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.18 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.17 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.12 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.08 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.07 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.99 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.98 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.98 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.98 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.96 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.92 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.87 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.73 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.72 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.7 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.69 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.65 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.65 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.55 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.55 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.48 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.48 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.42 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.4 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.39 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.36 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.34 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.28 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.27 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 97.19 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.11 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.0 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.99 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.89 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 96.86 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.65 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.64 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.58 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 96.5 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.35 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.32 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 96.31 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.3 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 96.28 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 96.24 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.2 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.18 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.17 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.11 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 96.1 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 96.1 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.1 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.08 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 96.03 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.03 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 96.01 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 96.0 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 95.98 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 95.97 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 95.75 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 95.73 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.72 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.66 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.65 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.64 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 95.63 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.55 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.54 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.54 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 95.42 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.41 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 95.36 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 95.16 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.12 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 95.1 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.08 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 95.05 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.0 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 95.0 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 94.99 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 94.97 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 94.93 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 94.85 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 94.84 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.82 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 94.81 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 94.79 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.74 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.64 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 94.58 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 94.54 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 94.46 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 94.41 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 94.21 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 94.16 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 94.05 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 94.05 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 93.97 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 93.82 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 93.71 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 93.63 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 93.6 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 93.51 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 93.45 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 93.44 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 93.38 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 93.37 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 93.28 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 93.19 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 93.19 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 93.09 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 93.07 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 93.0 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 92.98 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 92.96 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 92.93 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 92.82 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 92.77 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 92.73 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 92.72 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 92.65 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 92.63 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 92.63 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 92.53 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 92.47 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 92.46 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 92.44 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 92.41 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 92.35 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 92.22 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 92.21 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 92.16 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 92.03 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 92.02 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 91.98 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 91.95 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 91.92 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 91.87 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 91.77 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 91.77 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 91.69 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 91.63 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 91.52 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 91.45 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 91.39 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 91.2 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 91.19 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 91.13 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 91.12 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 91.06 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 91.02 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 90.84 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 90.78 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 90.75 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 90.75 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 90.66 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 90.61 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 90.48 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 90.45 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 90.44 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 90.41 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 90.4 | |
| 1cf7_A | 76 | Protein (transcription factor E2F-4); E2F, winged- | 90.27 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 90.23 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 90.17 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 90.04 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 89.97 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 89.53 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.4 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 89.37 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 89.34 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 89.14 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 89.09 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 89.06 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 89.06 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 89.05 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 88.77 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 88.76 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 88.56 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 88.56 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 88.55 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 88.32 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 88.25 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 88.24 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 88.15 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 87.93 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 87.86 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 87.7 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 87.32 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 87.28 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 87.26 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 87.2 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 86.86 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 86.76 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 86.42 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 86.41 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 86.02 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 85.79 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 85.55 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 85.22 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 84.97 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.74 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 84.61 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 84.44 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 84.38 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 84.01 | |
| 3mag_A | 307 | VP39; methylated adenine, methyltransferase, RNA C | 83.87 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 83.31 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 83.18 | |
| 2w57_A | 150 | Ferric uptake regulation protein; gene regulation, | 82.96 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 82.8 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 82.33 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 82.31 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 82.25 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 82.25 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 81.88 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 81.87 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 81.61 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 81.47 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 81.41 | |
| 2yu3_A | 95 | DNA-directed RNA polymerase III 39 kDa polypeptide | 80.72 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 80.7 | |
| 2ek5_A | 129 | Predicted transcriptional regulators; helix-turn-h | 80.59 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=389.90 Aligned_cols=328 Identities=20% Similarity=0.351 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+++..|.+++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+ +++.++||||+|++.|++++..+.
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~~---- 79 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETRG---- 79 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEeccC----
Confidence 6677899999999999999999999999999875579999999999999 789999999999999999865321
Q ss_pred CccceEecccccc-ccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcC--CCChhhhcccCccHHHHH
Q 018205 94 QEEEAYALTLTSK-LFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETAND--GTVFWDYMAKNPDFNSIY 170 (359)
Q Consensus 94 ~~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~ 170 (359)
+++.|++|+.++ ++.++++.++..++.+.. ...+..|..|.++++++. +++...++ +.++|+++.++++....|
T Consensus 80 -~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f 156 (353)
T 4a6d_A 80 -GKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQF 156 (353)
T ss_dssp -TEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHH
T ss_pred -ccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHH
Confidence 145899999887 566778888888887764 346788999999999998 56777762 257899999999999999
Q ss_pred HHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC------CCCCceEee
Q 018205 171 NQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP------DTDNLKFIA 243 (359)
Q Consensus 171 ~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~------~~~~v~~~~ 243 (359)
+.+|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.|+ ..+||+++.
T Consensus 157 ~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~ 234 (353)
T 4a6d_A 157 MQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQE 234 (353)
T ss_dssp HHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeec
Confidence 99999888776 88888888 7888999999999999999999999999999999998887665 258999999
Q ss_pred CCCCC-CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC
Q 018205 244 GDMFQ-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR 322 (359)
Q Consensus 244 ~d~~~-~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (359)
+|+++ +.|++|+|+++++||+|+|+++.++|++++++|+| ||+++|+|...++....+ .....+|+.|+...+
T Consensus 235 gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~ 308 (353)
T 4a6d_A 235 GDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTE 308 (353)
T ss_dssp SCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSS
T ss_pred CccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCC
Confidence 99987 46789999999999999999999999999999999 999999999987665433 234568899998889
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
|++||.+||+++|++|||+.+++++.+...++|+++|
T Consensus 309 g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 309 GQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 9999999999999999999999999999999999986
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=378.77 Aligned_cols=346 Identities=27% Similarity=0.485 Sum_probs=295.3
Q ss_pred CchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCC-CCCCHHHHHHhcCC--CCCCcccHHHHHHHHHccCcee
Q 018205 8 GAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHG-RPITLPQLVSALEI--NPTKADGLFKLMRLLVHTGFFS 84 (359)
Q Consensus 8 ~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~-~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~gll~ 84 (359)
...+..+++..+++++.+++.+++|++|+++|||+.|.+.| +|+|++|||+++|+ +|.+...|+||||+|++.|+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~ 92 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVT 92 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEE
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEE
Confidence 44567778999999999999999999999999999998854 69999999999997 5433449999999999999999
Q ss_pred eecccccccCccceEeccccccccccC-CCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccC
Q 018205 85 TANVQSAQQQEEEAYALTLTSKLFLKD-KPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKN 163 (359)
Q Consensus 85 ~~~~~~~~~~~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 163 (359)
+......+...+++|++|+.++.|+.+ .+.++..++.+...+.++..|.+|.+++++|. ++|+..+ |.++|+++.++
T Consensus 93 ~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~-g~~~~~~~~~~ 170 (364)
T 3p9c_A 93 CLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAY-GMSAFEYHGTD 170 (364)
T ss_dssp EEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHH-SSCHHHHHTTC
T ss_pred EeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhc-CCCHHHHHHhC
Confidence 862100000003689999999988765 46688888877656667889999999999987 7899889 89999999999
Q ss_pred ccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEe
Q 018205 164 PDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFI 242 (359)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 242 (359)
++..+.|+.+|....... +.+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.|+..++++++
T Consensus 171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 249 (364)
T 3p9c_A 171 PRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHV 249 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEE
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEE
Confidence 999999999999877766 77888776 3567799999999999999999999999999999998899999988999999
Q ss_pred eCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh-hc
Q 018205 243 AGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV-AV 321 (359)
Q Consensus 243 ~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 321 (359)
.+|+++++|..|+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.............+++.|+. ..
T Consensus 250 ~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~ 326 (364)
T 3p9c_A 250 GGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNP 326 (364)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCS
T ss_pred eCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhccc
Confidence 99998877767999999999999999999999999999999 999999999887654332112233457787774 36
Q ss_pred CCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 322 RGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 322 ~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+|+.||.++|.++|+++||+.+++.+..+..++||++|
T Consensus 327 ~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 327 GGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp SCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 88999999999999999999999999999999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=371.46 Aligned_cols=342 Identities=30% Similarity=0.519 Sum_probs=291.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccC---CCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeee
Q 018205 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKH---GRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 11 ~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~---~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..+++..+++++.|++.+++|++|+++|||+.|.+. ++|+|++|||+++| .+|.+.+.|+||||+|++.|+|++.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 5667889999999999999999999999999999873 24799999999998 4543345999999999999999986
Q ss_pred cccccccC-ccceEeccccccccccC-CCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCc
Q 018205 87 NVQSAQQQ-EEEAYALTLTSKLFLKD-KPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNP 164 (359)
Q Consensus 87 ~~~~~~~~-~~~~~~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 164 (359)
.... +.+ .+++|++|+.++.|+.+ .+.++..++.+..++.++..|.+|.+++++|. ++|+..+ |.++|+++++++
T Consensus 97 ~~~~-~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~-g~~~~~~~~~~~ 173 (368)
T 3reo_A 97 LREL-PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAY-GMNIFDYHGTDH 173 (368)
T ss_dssp EEEC-TTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHS-SSCHHHHHTTCH
T ss_pred cccC-CCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHh-CCCHHHHHhhCH
Confidence 2000 000 02689999999987755 46788888877656667889999999999987 6899888 899999999999
Q ss_pred cHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEee
Q 018205 165 DFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIA 243 (359)
Q Consensus 165 ~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 243 (359)
+..+.|+.+|....... ..+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++++++.
T Consensus 174 ~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 252 (368)
T 3reo_A 174 RINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence 99999999999877766 77777775 35677999999999999999999999999999999988999999889999999
Q ss_pred CCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh-cC
Q 018205 244 GDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA-VR 322 (359)
Q Consensus 244 ~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 322 (359)
+|+++++|..|+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.............+++.|+.. .+
T Consensus 253 ~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 329 (368)
T 3reo_A 253 GDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPG 329 (368)
T ss_dssp CCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSB
T ss_pred cCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCC
Confidence 9998877767999999999999999999999999999999 9999999998876543321222334677777764 47
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
|+.|+.++|.++|+++||+.+++.+..+..++||++|
T Consensus 330 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 330 GKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 8999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=369.05 Aligned_cols=331 Identities=25% Similarity=0.446 Sum_probs=288.4
Q ss_pred CCccCchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
+++-+.....++..++++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++||||+|++.|+|
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l 85 (348)
T 3lst_A 11 SRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVV 85 (348)
T ss_dssp -----CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSE
T ss_pred CcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCE
Confidence 3444555667788999999999999999999999999999986 79999999999999 789999999999999999
Q ss_pred eeecccccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccC
Q 018205 84 STANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKN 163 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 163 (359)
++ . +++|++|+.++.+.++++.++.+++.+..+..++..|.+|++++++|. ++|...+ |.++|+++.++
T Consensus 86 ~~-~--------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~-g~~~~~~~~~~ 154 (348)
T 3lst_A 86 RE-S--------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIF-GSSLDAYFDGD 154 (348)
T ss_dssp EE-E--------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHH-SSCHHHHHTTC
T ss_pred Ee-c--------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHh-CCCHHHHHHhC
Confidence 99 4 699999999998888877788888877655556788999999999887 5688888 88899999999
Q ss_pred ccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-----CCC
Q 018205 164 PDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-----DTD 237 (359)
Q Consensus 164 ~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-----~~~ 237 (359)
++..+.|+.+|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++..+. ..+
T Consensus 155 ~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~ 232 (348)
T 3lst_A 155 AEVEALYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAG 232 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCC
Confidence 999999999999887766 78888888 7788999999999999999999999999999999987555332 146
Q ss_pred CceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 238 ~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+++++.+|+++++|.||+|++++++|+|+++++.++|++++++|+| ||+++|.|...++..... ....+++.|
T Consensus 233 ~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~----~~~~~d~~~ 305 (348)
T 3lst_A 233 RWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDAH----QSKEMDFMM 305 (348)
T ss_dssp SEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSCC----HHHHHHHHH
T ss_pred CeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhhhcChhh
Confidence 8999999998777799999999999999999888999999999999 999999998887654321 224567777
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+...+++.++.++|.++|+++||+++++.+..+..++|+++|
T Consensus 306 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 306 LAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred hhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 766788999999999999999999999999888899999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-49 Score=367.80 Aligned_cols=346 Identities=48% Similarity=0.900 Sum_probs=294.0
Q ss_pred CCccCchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce
Q 018205 4 IQNEGAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFF 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll 83 (359)
|+....++..++..++++++.+++.+++|++++++|||+.|.+.++|.|++|||+++|++|.+++.++||||+|++.|+|
T Consensus 5 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll 84 (352)
T 1fp2_A 5 INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFF 84 (352)
T ss_dssp ---CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSE
T ss_pred ccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeE
Confidence 34445577888999999999999999999999999999999874359999999999999776688999999999999999
Q ss_pred eeecccccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhh-cCCCchhhhhcCCCChhhhccc
Q 018205 84 STANVQSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFR-DNELSAYETANDGTVFWDYMAK 162 (359)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~~~g~~~~~~~~~ 162 (359)
++... +++.|++|+.++.|+++++.++..++.+..++.++..|.+|+++++ +|. ++|...+ |.++|+++++
T Consensus 85 ~~~~~------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~-g~~~~~~~~~ 156 (352)
T 1fp2_A 85 EIITK------EEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTL-GSGFWDFLDK 156 (352)
T ss_dssp EEEES------SSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHH-SSCHHHHHHH
T ss_pred EEecC------CCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHc-CCCHHHHHHh
Confidence 98710 0489999999999998887788888877655556788999999999 665 7888888 8899999999
Q ss_pred CccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceE
Q 018205 163 NPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKF 241 (359)
Q Consensus 163 ~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 241 (359)
+|+..+.|+.+|....... +. ++.+++.+++..+|||||||+|.++..+++++|+.+++++|++.+++.|++..++++
T Consensus 157 ~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 235 (352)
T 1fp2_A 157 NPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235 (352)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEE
T ss_pred ChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEE
Confidence 9999999999999887765 55 777732367789999999999999999999999999999999779999987778999
Q ss_pred eeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc
Q 018205 242 IAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV 321 (359)
Q Consensus 242 ~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (359)
+.+|+++++|.||+|++++++|+|+++++.++|++++++|+|+++||+++|.+...++....+........+++.|+. .
T Consensus 236 ~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~ 314 (352)
T 1fp2_A 236 VGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L 314 (352)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G
T ss_pred EeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c
Confidence 999998888889999999999999999888999999999997212699999999887654321111233456776665 4
Q ss_pred CCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 322 RGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 322 ~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
++..++.++|.++|+++||+.+++.+.++..++|+++|
T Consensus 315 ~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 315 NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 57889999999999999999999999988899999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=366.03 Aligned_cols=327 Identities=28% Similarity=0.509 Sum_probs=289.9
Q ss_pred CchhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 8 GAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 8 ~~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
......+...++++++.|++.+++|++++++|||+.|.+ +|+|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 31 ~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~ 105 (369)
T 3gwz_A 31 GTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG 105 (369)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC
Confidence 344455668899999999999999999999999999986 79999999999999 7899999999999999999875
Q ss_pred ccccccCccce-EeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccH
Q 018205 88 VQSAQQQEEEA-YALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDF 166 (359)
Q Consensus 88 ~~~~~~~~~~~-~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~ 166 (359)
+++ |.+|+.++.|.++++.++..++.+...+..+..|.+|.++++++. ++|...+ |.++|+++.++++.
T Consensus 106 --------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~-g~~~~~~~~~~~~~ 175 (369)
T 3gwz_A 106 --------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVAN-GTSFWQLTHEDPKA 175 (369)
T ss_dssp --------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHH-SSCHHHHHHHCHHH
T ss_pred --------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhc-CCCHHHHHHhCHHH
Confidence 578 999999998888887788888877655446788999999999987 5677788 88899999999999
Q ss_pred HHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCC
Q 018205 167 NSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDN 238 (359)
Q Consensus 167 ~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~ 238 (359)
.+.|+.+|....... +.+++.++ +++..+|||||||+|.++..+++++|+++++++|++.+++.|++ .++
T Consensus 176 ~~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~ 253 (369)
T 3gwz_A 176 RELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADR 253 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCc
Confidence 999999999887766 78888887 77789999999999999999999999999999999778887762 578
Q ss_pred ceEeeCCCCCCCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 239 LKFIAGDMFQSIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 239 v~~~~~d~~~~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
++++.+|+++++| .||+|++++++|+|+++++.++|++++++|+| ||+++|.+...++.... . ...+++.|
T Consensus 254 v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~ 325 (369)
T 3gwz_A 254 CEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLL 325 (369)
T ss_dssp EEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHH
T ss_pred eEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHH
Confidence 9999999987777 69999999999999999988999999999999 99999999998776432 1 34677777
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEE-eCCceeEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITP-VYGIKSLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 359 (359)
+...+++.++.++|.++|+++||+++++.+ ..+..++|+++|
T Consensus 326 ~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 326 LVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 777889999999999999999999999999 578899999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=362.14 Aligned_cols=349 Identities=47% Similarity=0.858 Sum_probs=291.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccc
Q 018205 10 KEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQ 89 (359)
Q Consensus 10 ~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~ 89 (359)
.+..+++..+++++.+++.+++|++++++|||+.|.+.++|+|++|||+++|++|.+++.++||||+|++.|+|++....
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~ 84 (358)
T 1zg3_A 5 SELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVK 84 (358)
T ss_dssp SCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEeccc
Confidence 34556778899999999999999999999999999874359999999999999877789999999999999999876100
Q ss_pred ccc-cC-ccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCC-CchhhhhcCCCChhhhcccCccH
Q 018205 90 SAQ-QQ-EEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNE-LSAYETANDGTVFWDYMAKNPDF 166 (359)
Q Consensus 90 ~~~-~~-~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~ 166 (359)
..+ .+ .++.|++|+.++.|+++++.++..++.+..++.++..|.+|+++++++. .++|...+ |.++|+++.++|+.
T Consensus 85 ~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~-g~~~~~~~~~~p~~ 163 (358)
T 1zg3_A 85 GKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECAT-GESFWDFLNKDSES 163 (358)
T ss_dssp CSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHH-SSCHHHHHTSGGGH
T ss_pred ccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHh-CCCHHHHHhcChhh
Confidence 000 00 0379999999998988887788888887665567889999999999983 26788888 88999999999999
Q ss_pred HH--HHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeC
Q 018205 167 NS--IYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAG 244 (359)
Q Consensus 167 ~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 244 (359)
.+ .|+.+|.........+++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++..+++++.+
T Consensus 164 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~ 243 (358)
T 1zg3_A 164 STLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243 (358)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEEC
T ss_pred hhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeC
Confidence 99 9999998766433356666632256778999999999999999999999999999999889999887777999999
Q ss_pred CCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 245 DMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 245 d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
|+++++|.||+|+++++||+|+++++.++|++++++|+|+++||+++|.+...++....+........+++.|+...+|+
T Consensus 244 d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~ 323 (358)
T 1zg3_A 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGK 323 (358)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCC
Confidence 99887888999999999999999988899999999999711169999999988765432111123456777777667889
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.++.++|.++|+++||+.+++.+.++..++||++|
T Consensus 324 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 324 ERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp CEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 99999999999999999999999988899999987
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=359.06 Aligned_cols=343 Identities=28% Similarity=0.510 Sum_probs=275.7
Q ss_pred hhhHHHHHHHH--HHHHhHHHHHHHHHHHhcCcchhcccCCCC---CCHHHHHHhcCC---CCCCcccHHHHHHHHHccC
Q 018205 10 KEMFEAQAHLF--KIIYNYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVSALEI---NPTKADGLFKLMRLLVHTG 81 (359)
Q Consensus 10 ~~~~~~~~~l~--~~~~g~~~~~~l~~a~~lglf~~L~~~~~~---~t~~ela~~~~~---~~~~~~~l~~~L~~L~~~g 81 (359)
++..+++.+++ +++.|++.+++|++|+++|||+.|.+.|+| +|++|||+++|+ +|.+++.++||||+|++.|
T Consensus 17 ~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~g 96 (372)
T 1fp1_D 17 SEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS 96 (372)
T ss_dssp --CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCC
Confidence 34566778888 999999999999999999999999873226 999999999999 7767899999999999999
Q ss_pred ceeeecccccccCc--cceEeccccccccccCCC-CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhh
Q 018205 82 FFSTANVQSAQQQE--EEAYALTLTSKLFLKDKP-YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWD 158 (359)
Q Consensus 82 ll~~~~~~~~~~~~--~~~~~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~ 158 (359)
+|++.... ..++ ++.|++|+.++.|+++++ .++..++.+..++.++..|.+|+++++++..++|...+ |.++|+
T Consensus 97 ll~~~~~~--~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~-g~~~~~ 173 (372)
T 1fp1_D 97 VLTSTTRT--IEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYE 173 (372)
T ss_dssp SEEEEEEE--CTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------
T ss_pred ceEecccc--cCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHh-CCCHHH
Confidence 99886100 0000 259999999998888876 67888888765556678899999999998336788888 888999
Q ss_pred hcccCccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCC
Q 018205 159 YMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTD 237 (359)
Q Consensus 159 ~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 237 (359)
++.++|+..+.|+.+|....... +.+++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.|++.+
T Consensus 174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~ 252 (372)
T 1fp1_D 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS 252 (372)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCT
T ss_pred HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcC
Confidence 99999999999999998877666 77788775 35677899999999999999999999999999999977999998778
Q ss_pred CceEeeCCCCCCCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh
Q 018205 238 NLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 238 ~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
+++++.+|+++++|.||+|++++++|+|+++++.++|++++++|+| ||+++|.|...++.............+++.|
T Consensus 253 ~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 329 (372)
T 1fp1_D 253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLM 329 (372)
T ss_dssp TEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHH
Confidence 8999999998877789999999999999999888999999999999 9999999998876543211111334567766
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 359 (359)
+...++..++.++|.++|+++||+++++.+. .+..++||++|
T Consensus 330 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 330 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 6555788899999999999999999999984 55259999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-47 Score=350.01 Aligned_cols=318 Identities=26% Similarity=0.417 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
.+...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567899999999999999999999999999986 79999999999999 7899999999999999999875
Q ss_pred CccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHH
Q 018205 94 QEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQA 173 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (359)
++.|++|+.++.++ +++.++.+++.+..+... ..|.+|.++++++. ++|...+ |.++|+++.++++..+.|+.+
T Consensus 76 --~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~f~~~ 149 (334)
T 2ip2_A 76 --RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAF-GEDFYSYLKRCPDAGRRFLLA 149 (334)
T ss_dssp --TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHH-SSCHHHHHHHCHHHHHHHHHH
T ss_pred --CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-Chhhhhc-CCCHHHHHhhChHHHHHHHHH
Confidence 58999999999888 777788888877755444 78999999999987 6788888 889999999999999999999
Q ss_pred Hhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCC
Q 018205 174 MASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGD 245 (359)
Q Consensus 174 m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d 245 (359)
| ...... +.+++.++ +++ .+|||||||+|.++..+++++|+.+++++|++.+++.|++ .++++++.+|
T Consensus 150 m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 225 (334)
T 2ip2_A 150 M-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225 (334)
T ss_dssp H-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred H-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence 9 766655 77888887 666 9999999999999999999999999999999668887763 4689999999
Q ss_pred CCCCCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 246 MFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 246 ~~~~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+++++|. ||+|++++++|+|++++..++|++++++|+| ||.++|.+...++.... .....+++.|+...+|.
T Consensus 226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~ 298 (334)
T 2ip2_A 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGR 298 (334)
T ss_dssp TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCc
Confidence 9877765 9999999999999999888999999999999 99999999887765332 22345677776666788
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.++.++|.++|+++||+++++.+.++..++|+++|
T Consensus 299 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 299 HRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999999999988899999975
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=357.00 Aligned_cols=315 Identities=24% Similarity=0.377 Sum_probs=274.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc
Q 018205 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE 96 (359)
Q Consensus 17 ~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~ 96 (359)
..+++++.|++.+++|++|+++|||+.|.+ +|+|++|||+++|+ +++.++|||++|++.|++++.+ +
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~--------~ 73 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG--------Q 73 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------T
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC--------C
Confidence 467899999999999999999999999986 79999999999999 7899999999999999999875 6
Q ss_pred ceEeccccccccccCCCCChhhHHhhhcCcccc-cchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHh
Q 018205 97 EAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFV-NPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA 175 (359)
Q Consensus 97 ~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (359)
+.|.+|+.++.+.++++.++..++.+......+ ..|.+|.++++++. ++|...+ |.++|+++.++++..+.|+.+|.
T Consensus 74 ~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~f~~~m~ 151 (332)
T 3i53_A 74 GVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRY-GTSFWEDLGSDPVLSASFDTLMS 151 (332)
T ss_dssp SBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHH-SSCHHHHHHHCHHHHHHHHHHHH
T ss_pred CeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhh-CCCHHHHHHhCHHHHHHHHHHHH
Confidence 899999999988888777788887765433334 78999999999988 5688888 88899999999999999999998
Q ss_pred hcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCC
Q 018205 176 SDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMF 247 (359)
Q Consensus 176 ~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~ 247 (359)
...... +.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.|++ .++++++.+|++
T Consensus 152 ~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 152 HHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 876554 56666666 56678999999999999999999999999999999778887762 478999999998
Q ss_pred CCCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCccc
Q 018205 248 QSIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326 (359)
Q Consensus 248 ~~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
+++| +||+|++++++|+|++++..++|++++++|+| ||+++|.|...++. .. ...+++.|+...+++.+
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~~ 299 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKER 299 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCCC
T ss_pred CCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCCC
Confidence 7777 69999999999999999889999999999999 99999999887765 11 13567777766788999
Q ss_pred CHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 327 TEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.++|.++|+++||+++++.+.+. .++|++++
T Consensus 300 t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 300 SLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp CHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999999999999988 99999875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=341.91 Aligned_cols=327 Identities=15% Similarity=0.198 Sum_probs=264.0
Q ss_pred chhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecc
Q 018205 9 AKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANV 88 (359)
Q Consensus 9 ~~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~ 88 (359)
+.+..+++.++++++.|++.+++|++++++|||+.|.+.++|+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 9 ~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~-- 83 (363)
T 3dp7_A 9 QCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE-- 83 (363)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE--
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec--
Confidence 345677888999999999999999999999999999874579999999999999 789999999999999999886
Q ss_pred cccccCccceEeccccccccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCC--CChhhhcccCccH
Q 018205 89 QSAQQQEEEAYALTLTSKLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDG--TVFWDYMAKNPDF 166 (359)
Q Consensus 89 ~~~~~~~~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g--~~~~~~~~~~~~~ 166 (359)
+++|++|+.++.|+++++.+ .++.+. ....++.|.+|++++++|.+ ++...+ | .++|+++.++|+.
T Consensus 84 -------~~~y~~t~~s~~L~~~~~~~--~~~~~~-~~~~~~~~~~L~~~lr~g~~-~~~~~~-g~~~~~~~~~~~~~~~ 151 (363)
T 3dp7_A 84 -------EDRYVLAKAGWFLLNDKMAR--VNMEFN-HDVNYQGLFHLEEALLNGRP-EGLKVF-GEWPTIYEGLSQLPEQ 151 (363)
T ss_dssp -------TTEEEECHHHHHHHHCHHHH--HHHHHH-HHTTHHHHTTHHHHHHHSSC-GGGGGT-CCCSSHHHHGGGSCHH
T ss_pred -------CCEEecccchHHhhCCCccc--chheee-cHHhhhhHHHHHHHHhcCCC-cccccc-CchHhHHHHHhhCHHH
Confidence 58999999999888776322 233332 34568899999999999874 566667 5 6899999999987
Q ss_pred HHH----HHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------
Q 018205 167 NSI----YNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD------- 235 (359)
Q Consensus 167 ~~~----~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------- 235 (359)
.+. |+.+|..... ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++
T Consensus 152 ~~~~~~~f~~~~~~~~~--~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 227 (363)
T 3dp7_A 152 VQKSWFGFDHFYSDQSF--GKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG 227 (363)
T ss_dssp HHHHHHHHHHHTTCCCC--HHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhhhhhH--HHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc
Confidence 763 5555554322 34455443 25678999999999999999999999999999999778877662
Q ss_pred CCCceEeeCCCCCC---CC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH-HHHHH
Q 018205 236 TDNLKFIAGDMFQS---IP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ-LTEAK 310 (359)
Q Consensus 236 ~~~v~~~~~d~~~~---~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~-~~~~~ 310 (359)
.++++++.+|+++. +| .||+|++++++|+|+++++.++|++++++|+| ||+++|.|...+....... +....
T Consensus 228 ~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~ 304 (363)
T 3dp7_A 228 SERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQ 304 (363)
T ss_dssp GGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHH
T ss_pred ccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHH
Confidence 25899999999874 66 59999999999999999999999999999999 9999999988876543221 00111
Q ss_pred HhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCC-ceeEEEEeC
Q 018205 311 LLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYG-IKSLIEVYP 359 (359)
Q Consensus 311 ~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 359 (359)
...++.++...+++.++.++|.++|+++||+++++.+..+ ..++|+++|
T Consensus 305 ~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 305 ISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred hhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 1223333444567889999999999999999999997754 589999875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=337.01 Aligned_cols=324 Identities=21% Similarity=0.322 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 12 MFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 12 ~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
..+....+++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34567789999999999999999999999999975 79999999999999 7899999999999999999864
Q ss_pred ccCccc--eEeccccccccccCCCCChhhHHhhhcCcccc-cchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHH
Q 018205 92 QQQEEE--AYALTLTSKLFLKDKPYCLSPVVLTLTDQVFV-NPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNS 168 (359)
Q Consensus 92 ~~~~~~--~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 168 (359)
++ .|++|+.++.+.++++.++..++.+..++..+ ..|..|.++++++. ++|...+ |.++|+++..+++...
T Consensus 84 ----~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~-g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 84 ----KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRY-GRPFWEDLSADVALAD 157 (374)
T ss_dssp ----C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHH-SSCHHHHHHHCHHHHH
T ss_pred ----CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-Chhhhhh-CCCHHHHHhhChHHHH
Confidence 56 99999999999888887888887766433345 78899999999987 5677788 8899999999999999
Q ss_pred HHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCce
Q 018205 169 IYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLK 240 (359)
Q Consensus 169 ~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~ 240 (359)
.|+.+|....... +.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.|++ .++++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 235 (374)
T 1qzz_A 158 SFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVT 235 (374)
T ss_dssp HHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceE
Confidence 9999998777665 78888887 67789999999999999999999999999999999668877662 34899
Q ss_pred EeeCCCCCCCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee--ecCCCCcchHHHHHHHhhhhhh
Q 018205 241 FIAGDMFQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI--VINEKKEDAQLTEAKLLYDMLM 317 (359)
Q Consensus 241 ~~~~d~~~~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~--~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
++.+|+++++|. ||+|++++++|+|++++..++|++++++|+| ||.++|.+. ..++.... .....+++.+
T Consensus 236 ~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~ 308 (374)
T 1qzz_A 236 VAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRM 308 (374)
T ss_dssp EEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHH
T ss_pred EEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHH
Confidence 999999877775 9999999999999998888999999999999 999999998 65443211 2234566666
Q ss_pred hhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCce-----eEEEEeC
Q 018205 318 MVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIK-----SLIEVYP 359 (359)
Q Consensus 318 ~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 359 (359)
+...++..++.++|.++|+++||+++++...+... ++|+++|
T Consensus 309 ~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 309 LTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred HHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 66667889999999999999999999999987776 8998864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=330.23 Aligned_cols=320 Identities=23% Similarity=0.403 Sum_probs=275.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE 95 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~ 95 (359)
..++++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.+.|||++|++.|+|++.+
T Consensus 20 ~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~-------- 86 (360)
T 1tw3_A 20 ALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA-------- 86 (360)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE--------
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC--------
Confidence 4678999999999999999999999999975 79999999999999 7899999999999999999865
Q ss_pred cceEeccccccccccCCCCChhhHHhhhcCcc-cccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHH
Q 018205 96 EEAYALTLTSKLFLKDKPYCLSPVVLTLTDQV-FVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174 (359)
Q Consensus 96 ~~~~~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 174 (359)
+++|++|+.++.++++++.++..++.+...+. .+..|.+|.+.+++|. +++...+ |.++|+++..+++....|...|
T Consensus 87 ~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~-g~~~~~~~~~~p~~~~~f~~~~ 164 (360)
T 1tw3_A 87 PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIY-GKPFYEDLAGRPDLRASFDSLL 164 (360)
T ss_dssp TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHH-SSCHHHHHHTCHHHHHHHHHHH
T ss_pred CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhc-CCCHHHHHHhChHHHHHHHHHH
Confidence 68999999999999888878888876654333 5678899999999987 4577777 8899999999999999999999
Q ss_pred hhcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCC
Q 018205 175 ASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDM 246 (359)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~ 246 (359)
....... +.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.|++ .++++++.+|+
T Consensus 165 ~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 242 (360)
T 1tw3_A 165 ACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242 (360)
T ss_dssp TTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 8877766 78888887 67788999999999999999999999999999999668877652 34899999999
Q ss_pred CCCCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-cCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 247 FQSIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV-INEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 247 ~~~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
++++|. ||+|++++++|+|++++..++|++++++|+| ||.+++.+.. .++.... .....+++.++...++.
T Consensus 243 ~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 315 (360)
T 1tw3_A 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGA 315 (360)
T ss_dssp TSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCc
Confidence 877775 9999999999999998888999999999999 9999999987 5543221 12234566666556788
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCc-----eeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGI-----KSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 359 (359)
.++.++|.++|+++||+++++.+.+.. .++|+++|
T Consensus 316 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 316 LRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 999999999999999999999988665 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=318.06 Aligned_cols=314 Identities=21% Similarity=0.302 Sum_probs=266.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc
Q 018205 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE 96 (359)
Q Consensus 17 ~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~ 96 (359)
..+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++. +
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~---------~ 73 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ---------A 73 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec---------C
Confidence 578999999999999999999999999986 79999999999999 789999999999999999875 5
Q ss_pred ceEeccccc-cccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHh
Q 018205 97 EAYALTLTS-KLFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA 175 (359)
Q Consensus 97 ~~~~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 175 (359)
+.|++|+.+ ..+.++++.++..++.+..++..+..|.+|.++++++.+ +|. + |+++.++++....|...|.
T Consensus 74 ~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~------~-~~~~~~~~~~~~~~~~~~~ 145 (335)
T 2r3s_A 74 EGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGT-AIS------S-EGTLSPEHPVWVQFAKAMS 145 (335)
T ss_dssp TEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSC-CST------T-TGGGSTTCTHHHHHHHHSG
T ss_pred CEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCC-CCC------C-cccccCCHHHHHHHHHHHH
Confidence 999999999 678888777888888877543567889999999999873 232 2 7888888999999999888
Q ss_pred hcccch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCC
Q 018205 176 SDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMF 247 (359)
Q Consensus 176 ~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~ 247 (359)
...... ..+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.|++ .++++++.+|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 146 PMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp GGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 876655 677888772116788999999999999999999999999999999987777663 357999999997
Q ss_pred C-CCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc-CCc
Q 018205 248 Q-SIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV-RGS 324 (359)
Q Consensus 248 ~-~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 324 (359)
+ ++|. ||+|++++++|++++++..++|++++++|+| ||.+++.+...++....+ .....+++.|+... ++.
T Consensus 226 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 299 (335)
T 2r3s_A 226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGD 299 (335)
T ss_dssp TSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCC
T ss_pred cCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCC
Confidence 6 5664 9999999999999999889999999999999 999999998877643322 22345666666555 788
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
.++.++|.++|+++||+.+++.+..+..++++++
T Consensus 300 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 300 AYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred cCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 9999999999999999999999988777777664
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=317.05 Aligned_cols=311 Identities=16% Similarity=0.251 Sum_probs=256.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ 94 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~ 94 (359)
....+++++.|++.+++|++++++|||+.|. +|+|++|||+++|+ +++.++||||+|++.|+|++.
T Consensus 24 ~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~-------- 89 (352)
T 3mcz_A 24 SVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE-------- 89 (352)
T ss_dssp SHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec--------
Confidence 3445999999999999999999999999996 39999999999999 789999999999999999987
Q ss_pred ccceEecccccc-ccccCCCCChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHH
Q 018205 95 EEEAYALTLTSK-LFLKDKPYCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQA 173 (359)
Q Consensus 95 ~~~~~~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 173 (359)
+++|++|+.++ .+.++.+.++..++.+. ...+..|.+|.+++++|.+.+|... .++..+++..+.|..+
T Consensus 90 -~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~-------~~~~~~~~~~~~f~~~ 159 (352)
T 3mcz_A 90 -GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE-------SRFAHDTRARDAFNDA 159 (352)
T ss_dssp -TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH-------HHTTTCHHHHHHHHHH
T ss_pred -CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc-------cccccCHHHHHHHHHH
Confidence 48999999997 55667777777777654 2467889999999999886544322 1235678888999999
Q ss_pred HhhcccchHHHHHhcccccCC-CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCC
Q 018205 174 MASDSQLANLIVKDCQPIFQG-LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGD 245 (359)
Q Consensus 174 m~~~~~~~~~~~~~~~~~~~~-~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d 245 (359)
|.........+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++++++.+|
T Consensus 160 m~~~~~~~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 237 (352)
T 3mcz_A 160 MVRLSQPMVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKN 237 (352)
T ss_dssp HHHHHHHHHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECC
T ss_pred HHhhhhhHHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 9873221137788887 555 89999999999999999999999999999999878876652 3579999999
Q ss_pred CCCC---CCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc
Q 018205 246 MFQS---IPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV 321 (359)
Q Consensus 246 ~~~~---~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (359)
+++. .+. ||+|++++++|+|+++++.++|++++++|+| ||+++|.+...++....+ .....+++.|+...
T Consensus 238 ~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~ 311 (352)
T 3mcz_A 238 LLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNT 311 (352)
T ss_dssp TTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHS
T ss_pred cccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhC
Confidence 9874 454 9999999999999999899999999999999 999999999887764332 23346777776544
Q ss_pred -CCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 322 -RGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 322 -~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
++..++.++|.++|+++||++++.. .+..+++.++|
T Consensus 312 ~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 312 NHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp TTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 6889999999999999999998843 35577777654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=315.53 Aligned_cols=311 Identities=20% Similarity=0.359 Sum_probs=261.6
Q ss_pred hhhHHHHHHHHHHHH-hHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecc
Q 018205 10 KEMFEAQAHLFKIIY-NYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANV 88 (359)
Q Consensus 10 ~~~~~~~~~l~~~~~-g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~ 88 (359)
.+..++..++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~-- 97 (359)
T 1x19_A 25 NDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-- 97 (359)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE--
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEee--
Confidence 345667788889886 8999999999999999999986 79999999999999 789999999999999999987
Q ss_pred cccccCccceEeccccc-cccccCCC---CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCc
Q 018205 89 QSAQQQEEEAYALTLTS-KLFLKDKP---YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNP 164 (359)
Q Consensus 89 ~~~~~~~~~~~~~t~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 164 (359)
+++|++|+.+ ..+.++++ .++.+++.+. ....+..|.+|+++++++.+ |+++.++|
T Consensus 98 -------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~------------~~~~~~~p 157 (359)
T 1x19_A 98 -------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN------------FKGQVPYP 157 (359)
T ss_dssp -------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC------------CCCSSCSS
T ss_pred -------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC------------CcccccCc
Confidence 4799999964 57777776 6788877765 33567889999999998752 56677888
Q ss_pred c---HHHHHHHHHhhccc-ch-HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC----
Q 018205 165 D---FNSIYNQAMASDSQ-LA-NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD---- 235 (359)
Q Consensus 165 ~---~~~~~~~~m~~~~~-~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---- 235 (359)
+ ..+.|...|..... .. +.+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.|++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 235 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAE 235 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHh
Confidence 8 89999999998877 66 78888887 67789999999999999999999999999999999668887762
Q ss_pred ---CCCceEeeCCCCC-CCCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH
Q 018205 236 ---TDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL 311 (359)
Q Consensus 236 ---~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~ 311 (359)
.++++++.+|+++ +++.+|+|++++++|+|++++..++|++++++|+| ||.++|.+...++..... . ..
T Consensus 236 ~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~-~---~~ 308 (359)
T 1x19_A 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-F---DY 308 (359)
T ss_dssp TTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCTTSCC-H---HH
T ss_pred cCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCCCCch-H---HH
Confidence 4579999999976 56668999999999999998889999999999999 999999998876652211 1 11
Q ss_pred hhhhhhhh-hcCCcc----cCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 312 LYDMLMMV-AVRGSE----RTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 312 ~~~~~~~~-~~~g~~----~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.+ .++. ..++.. ++.++|.++|+++||+.+++.+.+ ..++++++|
T Consensus 309 ~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 309 LS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 22 2322 234556 899999999999999999999988 788898875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=166.17 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=119.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC--CCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~ 260 (359)
.+++.+|||||||+|.++..+++++ |+++++|+|+++ |++.|++ ..+|+++++|+.+ +++.||+|+++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4577899999999999999999985 678999999965 9887762 4689999999966 566799999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh--------------hcCCccc
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV--------------AVRGSER 326 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~ 326 (359)
++|++++++..++|++++++|+| ||.+++.|............ ......++.... ..--..+
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999988888899999999999 99999999877654321100 000011110000 0001246
Q ss_pred CHHHHHHHHHHcCCceeEEEEe-CCceeEEE
Q 018205 327 TEKEWEKLFLDAGFSHFKITPV-YGIKSLIE 356 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~ 356 (359)
|.+++.++|+++||+.++++.- .++.+++-
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA 254 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVA 254 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEE
Confidence 8999999999999999888654 44445443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-19 Score=152.75 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=126.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCC-CccE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIP-PADA 255 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p-~~D~ 255 (359)
.++..+. ...+..+|||||||+|.++..+++.+|+.+++++|++. +++.|+ ...+++++.+|+.+ +.+ .||+
T Consensus 34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 4444443 23456899999999999999999999999999999954 777665 23489999999965 333 5999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-------------hhhhcC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-------------MMVAVR 322 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 322 (359)
|++..++|++++++..++|++++++|+| ||.+++.+...+.......... ..+.... ......
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLNK-TIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHHH-HHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHHH-HHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 9999999999988877899999999999 9999999988765432110000 0000000 000012
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
...++.+++.++|+++||+.+++.......+++..+
T Consensus 189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 224 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR 224 (234)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence 345789999999999999999998887776666554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=141.79 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=122.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. ..+..+|||+|||+|.++..+++.. |..+++++|++. +++.++. ..++++..+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 45666665 5677899999999999999999996 788999999954 8877762 3579999999965 343
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|+++.++|++++. ..+|++++++|+| ||.+++.+.......... .....++.++
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~ 163 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEWE 163 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHHH
Confidence 39999999999999765 5699999999999 899999887665442111 0013468999
Q ss_pred HHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
|.++|+++||+++++.........+.++
T Consensus 164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 191 (219)
T 3dh0_A 164 VGLILEDAGIRVGRVVEVGKYCFGVYAM 191 (219)
T ss_dssp HHHHHHHTTCEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEeeCCceEEEEEE
Confidence 9999999999999999887766666554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-17 Score=141.53 Aligned_cols=169 Identities=15% Similarity=0.225 Sum_probs=119.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CCC-CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SIP-PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~p-~~D~i 256 (359)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +.+ .||+|
T Consensus 35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v 110 (220)
T 3hnr_A 35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI 110 (220)
T ss_dssp HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence 35555555 446789999999999999999987 67999999954 8877663 2489999999965 333 59999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh--hhhhcCCcccCHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML--MMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~t~~~~~~l 334 (359)
++.+++|++++++...+|++++++|+| ||.+++.++..................... .........++.++|.++
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTI 187 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHH
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHH
Confidence 999999999988777799999999999 999999987665432111000000000000 000011234589999999
Q ss_pred HHHcCCceeEEEEeCCceeEEEEe
Q 018205 335 FLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 335 l~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
|+++||+++.+... ....++.+.
T Consensus 188 l~~aGf~v~~~~~~-~~~w~~~~~ 210 (220)
T 3hnr_A 188 FENNGFHVTFTRLN-HFVWVMEAT 210 (220)
T ss_dssp HHHTTEEEEEEECS-SSEEEEEEE
T ss_pred HHHCCCEEEEeecc-ceEEEEeeh
Confidence 99999987666554 455555443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=140.47 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=112.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCCCCC--CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQSIP--PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~~~p--~~D~i 256 (359)
..+++.+. ...+..+|||||||+|.++..+++. +.+++++|++. +++.++. ..+++++.+|+.+..+ .||+|
T Consensus 35 ~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v 111 (218)
T 3ou2_A 35 PAALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAV 111 (218)
T ss_dssp HHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEE
T ss_pred HHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEE
Confidence 34455444 2445679999999999999999998 67999999954 8877763 3689999999966433 49999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcC------CcccCHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVR------GSERTEKE 330 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~t~~~ 330 (359)
++++++|++++++...+|++++++|+| ||.+++.+...+.......+.......-.... ..+ ...++.++
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDSEPEVAVRRTL-QDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC------------CEEEEEC-TTSCEEEEECCCCCHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhcccccceeeec-CCcchhhHhhcCCCHHH
Confidence 999999999988778899999999999 99999998776432211000000000000000 011 12459999
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955554443
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=146.11 Aligned_cols=155 Identities=18% Similarity=0.334 Sum_probs=119.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ ..+++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 34455554 5667899999999999999999987 77999999955 7776652 2789999999965 444 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..++|++++++...+|++++++|+| ||.+++.+.......... .. .... ....+...++.++|.+
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~ 191 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---DE--FKEY--VKQRKYTLITVEEYAD 191 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---HH--HHHH--HHHHTCCCCCHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---HH--HHHH--HhcCCCCCCCHHHHHH
Confidence 999999999999877788999999999999 999999998776522111 00 0000 1112345679999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+++++....
T Consensus 192 ~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 192 ILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHTTCEEEEEEECH
T ss_pred HHHHcCCeEEEEEeCC
Confidence 9999999999887653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.73 E-value=9e-18 Score=144.72 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=117.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.++ ..+. +|||||||+|.++..+++. ++.+++++|++. +++.|+. .++++++.+|+.+ +++
T Consensus 34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34455554 3333 9999999999999999998 788999999954 8877662 3589999999966 444
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHH-HHHh-hhhhhhhhcCCcccCH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTE-AKLL-YDMLMMVAVRGSERTE 328 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~~~t~ 328 (359)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+.......... ... .... ..+..........++.
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENV 183 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCH
Confidence 49999999999999655 5699999999999 899988875543321110 000 0000 0000000112345588
Q ss_pred HHHHHHHHHcCCceeEEEEeCCceeEEEE
Q 018205 329 KEWEKLFLDAGFSHFKITPVYGIKSLIEV 357 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~~~~~~~vi~~ 357 (359)
++|.++|+++||+.+++........++..
T Consensus 184 ~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 184 ERFQNVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence 99999999999999999887665555443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-18 Score=146.76 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=114.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++..+ +++++|++ .+++.|++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 478999999999999999999876 89999995 48877763 3789999999966 444 4999999999777
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch--HHHHHHHhhhhhhhhhcC------------------Cc
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA--QLTEAKLLYDMLMMVAVR------------------GS 324 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------------g~ 324 (359)
+..++..+++++++++|+| ||.+++.+.......... .................. ..
T Consensus 116 ~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFN 192 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehh
Confidence 7767778899999999999 899999877533211100 000000000000000000 11
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
.++ .+|.++|+++||+.+++...+....+|+.+|
T Consensus 193 ~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 193 VWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp CCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 222 4899999999999999999988888998876
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-17 Score=141.02 Aligned_cols=141 Identities=16% Similarity=0.289 Sum_probs=110.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccEEEEcchhccC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl~~~ 265 (359)
+.+..+|||||||+|.++..+++. +.+++++|++. +++.+++. ++++.+|+.+ +++ .||+|++.+++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999998 66899999955 88887654 8999999854 444 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++++...+|++++++|+| ||.+++..+..... ... .... ........++.+++.++|+++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~------~~~---~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTSL------YSL---INFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTSH------HHH---HHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcchh------HHH---HHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 988888899999999999 89999877653221 111 1111 1112345678999999999999999888
Q ss_pred EEeC
Q 018205 346 TPVY 349 (359)
Q Consensus 346 ~~~~ 349 (359)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=144.30 Aligned_cols=152 Identities=15% Similarity=0.312 Sum_probs=115.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|++. +++.|++ ..+++++.+|+.+ +++
T Consensus 27 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 27 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 56666666 55778999999999999999999864 899999955 8877652 3579999999965 454
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-h-hhcCCcccCHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-M-VAVRGSERTEK 329 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~t~~ 329 (359)
.||+|+++.++|++++. ..+|++++++|+| ||.+++.+...+.... . . .++.... . .......++.+
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDA---F-D--VFYNYVEKERDYSHHRAWKKS 171 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHH---H-H--HHHHHHHHHHCTTCCCCCBHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCCCHH---H-H--HHHHHHHHhcCccccCCCCHH
Confidence 49999999999999876 4699999999999 9999998877655421 1 1 1111111 1 11233567899
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++.+...
T Consensus 172 ~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 172 DWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEEe
Confidence 9999999999998877665
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=142.02 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=119.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 45666666 5677899999999999999999987 68999999954 7776652 3579999999965 444
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+.......... .....+........+..++.++
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA----KKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH----HHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh----HHHHHHHHHhhcCccCCCCHHH
Confidence 49999999999999776 5699999999999 999999998765433221 1111111111123456789999
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||+++++...+
T Consensus 199 ~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHcCCeEEEEEECc
Confidence 9999999999999887663
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-17 Score=144.02 Aligned_cols=162 Identities=19% Similarity=0.166 Sum_probs=112.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEEEcc-hhccCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFFFKA-IFHAFV 266 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~~~~-vl~~~~ 266 (359)
.++..+|||||||+|.++..+++.. .+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 3456899999999999999999884 5899999954 8887763 4589999999965 333 499999998 999996
Q ss_pred c-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH------------HH--------HHHHhhhhhhhhh-cC--
Q 018205 267 D-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ------------LT--------EAKLLYDMLMMVA-VR-- 322 (359)
Q Consensus 267 ~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~------------~~--------~~~~~~~~~~~~~-~~-- 322 (359)
+ ++...+|++++++|+| ||.+++.....++...... +. .....++..+... .+
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 4 5667899999999999 8888875433322110000 00 0000000111000 01
Q ss_pred ---------CcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 323 ---------GSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 323 ---------g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
...++.++|.++|+++||+++++........++.++
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~ 247 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGL 247 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEe
Confidence 235689999999999999999987776665555554
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=138.88 Aligned_cols=152 Identities=20% Similarity=0.354 Sum_probs=114.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++..+ +++++|++. +++.+++ ..+++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 45566666 66789999999999999999998864 899999954 8877652 3579999999955 444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hh-hhcCCcccCHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MM-VAVRGSERTEK 329 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~~~t~~ 329 (359)
.||+|++.+++|++++. ..+|++++++|+| ||.+++.+...+.... ... +.... .. .......++.+
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~ 155 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV---LDE---FVNHLNRLRDPSHVRESSLS 155 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH---HHH---HHHHHHHHHCTTCCCCCBHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCCChh---HHH---HHHHHHHhccccccCCCCHH
Confidence 49999999999999765 5699999999999 9999998887654421 111 11111 11 11224567999
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++++...
T Consensus 156 ~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEee
Confidence 9999999999998887654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=141.39 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=118.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.++ .+++++|++. +++.+++ .+++++..+|+.+....|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 34555555 56678999999999999999997764 5999999954 7776652 358999999994322459
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc-----hHHHHHHHhhhhh-hhhhcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED-----AQLTEAKLLYDML-MMVAVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~g~~~t 327 (359)
|+|++..++|++++++...+|++++++|+| ||.+++.+......... +.........+.. .....++..++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 999999999999876778899999999999 99999998876543210 0000000111111 11123556779
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|.++++++||+++++...
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCcEEEEEEeC
Confidence 999999999999999998765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=140.68 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=115.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.. ..+++++|++. +++.|++ ..+++++.+|+.+ +++ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34555554 4567899999999999999999886 55799999954 8777662 2679999999855 343 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++.+++|++++++..++|++++++|+| ||.+++.+........ ..+. ......++.++|.+
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVDK----EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEET----TTTEEEBCHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eecc----cCCcccCCHHHHHH
Confidence 999999999999988888999999999999 8999998865433211 0110 11234579999999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+|+++||+++++....
T Consensus 224 ~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHTCCEEEEEECT
T ss_pred HHHHCCCEEEEeeecC
Confidence 9999999999987764
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=141.38 Aligned_cols=152 Identities=17% Similarity=0.316 Sum_probs=116.0
Q ss_pred HHHHHhc----ccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-
Q 018205 182 NLIVKDC----QPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ- 248 (359)
Q Consensus 182 ~~~~~~~----~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~- 248 (359)
..+++.+ . +.+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ .++++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 3455555 3 5667899999999999999999986 56999999955 8777652 3689999999965
Q ss_pred CCC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCccc
Q 018205 249 SIP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSER 326 (359)
Q Consensus 249 ~~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 326 (359)
+++ .||+|++..++|++++. ..+|++++++|+| ||.+++.+.......... .....+... ......
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~ 212 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMG 212 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCC
T ss_pred CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCC
Confidence 444 49999999999999874 6799999999999 999999998766543221 111111111 112356
Q ss_pred CHHHHHHHHHHcCCceeEEEEe
Q 018205 327 TEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+.++|.++|+++||+++++...
T Consensus 213 ~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 213 SLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeEEEEEEC
Confidence 8999999999999999988765
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=139.26 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=113.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEEE-cchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFFF-KAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~~-~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++..+ +++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|+| ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4578999999999999999999865 899999954 8887763 4679999999965 333 4999995 559999864
Q ss_pred -hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH--------H----H--------HHHhhhhhhhhhc-CC--
Q 018205 268 -EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL--------T----E--------AKLLYDMLMMVAV-RG-- 323 (359)
Q Consensus 268 -~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~--------~----~--------~~~~~~~~~~~~~-~g-- 323 (359)
++..++|++++++|+| ||.+++.+...+........ . . ........+.... ++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV 193 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence 5678899999999999 88888876554432100000 0 0 0000001111001 11
Q ss_pred ---------cccCHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 324 ---------SERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 324 ---------~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.++.++|.++|+++||+++.+....+...+++++|
T Consensus 194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 357999999999999998777766666677777754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=137.40 Aligned_cols=142 Identities=22% Similarity=0.269 Sum_probs=108.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--CccEEEEcchhccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAF 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~ 265 (359)
++..+|||||||+|.++..+++. +.+++++|++. +++.++. ..+++++.+|+.+ +++ .||+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999998 67999999954 7777663 5789999999965 443 49999999999999
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
++. ..+|++++++|+| ||.+++.+.......... .+............++.+++.++|+++||++++.
T Consensus 130 ~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKS---DGYACIAILGPTAKPREN-------SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp SCH--HHHHHHHHHHEEE---EEEEEEEEECTTCGGGGG-------GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cCH--HHHHHHHHHHhCC---CeEEEEEEcCCcchhhhh-------hhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 765 4699999999999 898888875544322111 1111111112234578999999999999999998
Q ss_pred EEe
Q 018205 346 TPV 348 (359)
Q Consensus 346 ~~~ 348 (359)
..+
T Consensus 198 ~~~ 200 (242)
T 3l8d_A 198 IGV 200 (242)
T ss_dssp EEE
T ss_pred ecc
Confidence 765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=139.46 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=114.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 35555555 5677899999999999999999987 67999999954 8877752 2589999999965 232
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..++|++++. .++|++++++|+| ||.+++.+.......... .....+ ........++.++|
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~ 170 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQAC----GVSSTSDFLTLPGL 170 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTT----TCSCGGGSCCHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---HHHHHH----hcccccccCCHHHH
Confidence 49999999999999765 5699999999999 999999988765443221 110000 00111246799999
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.++|+++||+.+++...
T Consensus 171 ~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 171 VGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHCCCeeEEEEeC
Confidence 99999999999887653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=136.63 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=110.9
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|++.+++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999988 66899999954 8887764 5689999999965 333 499999999999998777
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
...+|++++++|+| ||.+++........... ... ......++.++|.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YHP----VATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CCS----SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hch----hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 78899999999999 89888887655442110 000 112346799999999999999999998774
Q ss_pred C
Q 018205 350 G 350 (359)
Q Consensus 350 ~ 350 (359)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=140.49 Aligned_cols=152 Identities=16% Similarity=0.324 Sum_probs=112.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
+.+..+|||||||+|.++..+++.+|+.+++++|++. +++.+++ ..++++..+|+.+ +++ .||+|+++++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 4677899999999999999999999999999999954 8777652 3579999999965 333 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh--hhhhhcCCcccCHHHHHHHHHHcC
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM--LMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
++++++.. .+|++++++|+| ||.+++.+.........+........+.. ......++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99998764 699999999999 99999988654322100000011011111 111123455677889999999999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999888755
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=146.06 Aligned_cols=145 Identities=17% Similarity=0.307 Sum_probs=112.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCCC--------------CCceEeeCCCCC-------C
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPDT--------------DNLKFIAGDMFQ-------S 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~~--------------~~v~~~~~d~~~-------~ 249 (359)
.+..+|||||||+|.++..+++.+ |+.+++++|++. +++.|++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 457899999999999999999986 788999999954 88777632 689999999965 3
Q ss_pred CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC
Q 018205 250 IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT 327 (359)
Q Consensus 250 ~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t 327 (359)
++ .||+|+++.++|++++. ..+|++++++|+| ||.+++.+.......... . ...........+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADRRLSEA-A-----QQDPILYGECLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESSCCCHH-H-----HHCHHHHHTTCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEeccccccCHh-H-----hhhHHHhhcccccCCC
Confidence 44 49999999999999775 5699999999999 999999887766443221 1 1111122223345678
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|.++|+++||+.+++...
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~~ 251 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVSV 251 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEec
Confidence 999999999999998776543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.8e-16 Score=141.10 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=120.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
..+++.+. ..+..+|||||||+|.++..+++.++ .+++++|++. +++.|++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 35566665 56778999999999999999999976 7999999954 8877762 348999999995442349
Q ss_pred cEEEEcchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHH-----HHHHhhhhhhh-hh
Q 018205 254 DAFFFKAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLT-----EAKLLYDMLMM-VA 320 (359)
Q Consensus 254 D~i~~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~ 320 (359)
|+|++..++|++++ +....+++++.++|+| ||.+++.+...+......... ......++... ..
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 99999999999954 5567899999999999 999999888766432110000 00000011111 12
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
.++..++.+++.++++++||+++++...+.
T Consensus 216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 216 PGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 356788999999999999999999877643
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=135.52 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=108.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC-CccEEEEcchhccCCch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~~~ 268 (359)
+.+..+|||||||+|.++..+++. +.+++++|++. +++.++...++.+..+|+.+ +.+ .||+|++..++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 345789999999999999999987 67999999955 88877754478888999854 322 49999999999999977
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC-CceeEEEE
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG-FSHFKITP 347 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG-f~~~~~~~ 347 (359)
+...+|++++++|+| ||.+++............ .. .....++.++|.++|+++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--------~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRDK--------LA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEECT--------TS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCcccccc--------cc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 888999999999999 888888754443221110 00 0113569999999999999 99998876
Q ss_pred e
Q 018205 348 V 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=143.51 Aligned_cols=169 Identities=15% Similarity=0.241 Sum_probs=115.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----C----CCceEeeCCCCC-CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----T----DNLKFIAGDMFQ-SI 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~----~~v~~~~~d~~~-~~ 250 (359)
..+++.++ .+..+|||||||+|.++..+++. +.+++++|++. +++.|++ . .+++++++|+.+ +.
T Consensus 73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL 147 (299)
T ss_dssp HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence 45555554 23459999999999999999988 67899999954 8887763 1 689999999966 33
Q ss_pred C-CccEEEEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch-----HHH-HHHHhhhhhh-----
Q 018205 251 P-PADAFFFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA-----QLT-EAKLLYDMLM----- 317 (359)
Q Consensus 251 p-~~D~i~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~-----~~~-~~~~~~~~~~----- 317 (359)
+ .||+|++. .++|++++++..++|++++++|+| ||.+++............ .+. .....+.+..
T Consensus 148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 4 49988864 778888777788999999999999 888888766543210000 000 0000000000
Q ss_pred --------h-----------hhcCCcccCHHHHHHHHHHcCCceeEEEEeCCc------eeEEEEe
Q 018205 318 --------M-----------VAVRGSERTEKEWEKLFLDAGFSHFKITPVYGI------KSLIEVY 358 (359)
Q Consensus 318 --------~-----------~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~------~~vi~~~ 358 (359)
. .....+.++.++|.++|+++||+++++...... ..++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0 000112579999999999999999999988522 3566654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=138.11 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=112.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
..+++.++ ..+..+|||||||+|.++..+++ ++.+++++|++. +++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 45556565 46678999999999999999997 678999999965 99988876799999999965 444 499999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
+.+++|++++. ..+|++++++|+ ||.+++.+.......... .. ..+.. .........++.+++. +|++
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIRLAQRIW---LY-DYFPF-LWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGGGCCCCG---GG-GTCHH-HHHHHHTSCCHHHHHH-HHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCchhHHHH---HH-HHHHH-HhhhhhhhCCCHHHHH-HHHH
Confidence 99999999665 569999999998 488999887654332110 00 00000 0011123455788899 9999
Q ss_pred cCCceeEEEEe
Q 018205 338 AGFSHFKITPV 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+.+++...
T Consensus 168 aGF~~v~~~~~ 178 (261)
T 3ege_A 168 NTKRRVEAIPF 178 (261)
T ss_dssp HHCSEEEEEEC
T ss_pred cCCCceeEEEe
Confidence 99999888766
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=135.96 Aligned_cols=140 Identities=18% Similarity=0.276 Sum_probs=108.5
Q ss_pred CCCeEEEeCCCc---chHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCCC------------C--C
Q 018205 194 GLGSLVDVGGGT---GSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQS------------I--P 251 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~~------------~--p 251 (359)
+..+|||||||+ |.++..+.+.+|+.+++++|++ .|++.|++ .++++++.+|+.+. + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 9998888888999999999995 58887762 47899999999641 2 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..+||++++++...+|++++++|+| ||.+++.+..... ... . ....+...........++.+++
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LPA-Q---QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CHH-H---HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hHH-H---HHHHHHHHhcCCCCccCCHHHH
Confidence 58999999999999987788899999999999 9999998877533 111 1 1112222211224567899999
Q ss_pred HHHHHHcCCceeE
Q 018205 332 EKLFLDAGFSHFK 344 (359)
Q Consensus 332 ~~ll~~aGf~~~~ 344 (359)
.++| .||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 6998765
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=141.64 Aligned_cols=161 Identities=18% Similarity=0.229 Sum_probs=118.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p~~ 253 (359)
..+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|++. +++.|++ .++++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 35555555 5667899999999999999999887 56999999954 8777662 257999999984422359
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch----HHH-HHHHhhhhhh-hhhcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA----QLT-EAKLLYDMLM-MVAVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~----~~~-~~~~~~~~~~-~~~~~g~~~t 327 (359)
|+|++..++|++++++..++|+++.++|+| ||.+++.+.......... ... ......+... ....++..++
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 999999999999877778899999999999 999999988875532100 000 0000111111 1113456789
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+++.++++++||+++++...
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 999999999999999887765
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=138.77 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=106.8
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
..+|||||||+|.++..+++ ++.+++++|++. +++.|++ ..+++++.+|+.+..+ .||+|+++.++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 46999999999999999876 477899999954 8877662 2469999999976333 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+++++...+|++++++|+| ||.+++.+......... ....++.++|.++|+++||++++
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGG------------------PPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSC------------------SSCCCCHHHHHHHHGGGTEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCC------------------CCccCCHHHHHHHHHHcCCeEEE
Confidence 9977888999999999999 89998877655432211 01225899999999999999999
Q ss_pred EEEeC
Q 018205 345 ITPVY 349 (359)
Q Consensus 345 ~~~~~ 349 (359)
+...+
T Consensus 204 ~~~~~ 208 (235)
T 3lcc_A 204 VEENP 208 (235)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 88774
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-16 Score=136.15 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=113.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-- 251 (359)
.++..+. .+.+..+|||||||+|.++..+++..+. +++++|++. +++.|++ .++++++.+|+.+ +++
T Consensus 36 ~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 36 KAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 3444443 2456789999999999999999999876 999999954 8776652 4569999999955 343
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..++|++ + ...+|++++++|+| ||.+++.+.......... .....+ . ......++.++|
T Consensus 114 ~fD~v~~~~~l~~~-~--~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~~~~~---~--~~~~~~~~~~~~ 179 (257)
T 3f4k_A 114 ELDLIWSEGAIYNI-G--FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---EIEDFW---M--DAYPEISVIPTC 179 (257)
T ss_dssp CEEEEEEESCSCCC-C--HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---HHHHHH---H--HHCTTCCBHHHH
T ss_pred CEEEEEecChHhhc-C--HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---HHHHHH---H--HhCCCCCCHHHH
Confidence 49999999999998 3 35699999999999 999999997754433221 111111 1 011235689999
Q ss_pred HHHHHHcCCceeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~ 349 (359)
.++|+++||+++++...+
T Consensus 180 ~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 180 IDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHTTEEEEEEEECC
T ss_pred HHHHHHCCCeEEEEEECC
Confidence 999999999999987664
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=135.35 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=104.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------------------CCCceEeeCCCCC-CC-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------------TDNLKFIAGDMFQ-SI- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------------~~~v~~~~~d~~~-~~- 250 (359)
+.+..+|||+|||+|..+..|+++ +.+++++|+++ |++.|++ ..+++++++|+++ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 67999999965 8887752 2579999999966 32
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
..||+|++..++|++++++..+++++++++|+| ||.++++.......... .....++.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 259999999999999987778899999999999 89866655443211000 01122588
Q ss_pred HHHHHHHHHcCCceeEEEEe
Q 018205 329 KEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~~~~ 348 (359)
+++.++|.+ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998777655
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=137.11 Aligned_cols=144 Identities=15% Similarity=0.226 Sum_probs=106.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCCCCC--CccEEEEcchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQSIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++..+ +++++|++. +++.|++ ..+++++.+|+.+..+ .||+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998865 699999965 8877763 1289999999955433 4999999999999987
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh---------hhhhhcCCcccCHHHHHHHHHH
Q 018205 268 EDCLKILKRCR-EAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM---------LMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 268 ~~~~~~L~~~~-~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
. .++|++++ ++|+| ||.+++.++....... ........ ..........++.+++.++|++
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSR-----QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 188 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHH-----HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEEcCChHHHHH-----HHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence 6 56999999 99999 8999998765432110 00000000 0001123456899999999999
Q ss_pred cCCceeEEEEe
Q 018205 338 AGFSHFKITPV 348 (359)
Q Consensus 338 aGf~~~~~~~~ 348 (359)
+||+++++...
T Consensus 189 ~Gf~~~~~~~~ 199 (250)
T 2p7i_A 189 AGLQVTYRSGI 199 (250)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEeee
Confidence 99999988754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=138.65 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=115.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+++.+. .+.+..+|||||||+|.++..+++++ +.+++++|++. +++.|++ .++++++.+|+.+ +++
T Consensus 106 ~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCC
Confidence 34455443 24567899999999999999999986 67999999954 8877662 3589999999965 444
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++..++|+++ ...+|++++++|+| ||.+++.+........... ......... .....++.++
T Consensus 184 ~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~s~~~ 251 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQPS--KWVSQINAH----FECNIHSRRE 251 (312)
T ss_dssp TCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSCC--HHHHHHHHH----HTCCCCBHHH
T ss_pred CCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccchh--HHHHHHHhh----hcCCCCCHHH
Confidence 499999999999994 56799999999999 9999999987765431110 111111111 1123678999
Q ss_pred HHHHHHHcCCceeEEEEeC
Q 018205 331 WEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~ 349 (359)
|.++|+++||+++++....
T Consensus 252 ~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 252 YLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHHHTTTEEEEEEEECH
T ss_pred HHHHHHHCCCEEEEEEeCC
Confidence 9999999999999988753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-16 Score=141.58 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=114.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHH-HHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIIS-EAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~ 260 (359)
+.+..+|||||||+|.++..++ ...|+.+++++|++. +++.|++ .++++++.+|+.+ +++ .||+|+++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999986 668899999999954 8777652 3459999999965 333 499999999
Q ss_pred hhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch------HHHH-HHHhhhhhhhhhcC---CcccCHH
Q 018205 261 IFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA------QLTE-AKLLYDMLMMVAVR---GSERTEK 329 (359)
Q Consensus 261 vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~---g~~~t~~ 329 (359)
++|++++++ ..+++++++++|+| ||.+++.+...+...... .+.. ........+..... ...++.+
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 999997554 45689999999999 899998776543321110 0000 00000000100111 1347999
Q ss_pred HHHHHHHHcCCceeEEEEeC-CceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPVY-GIKSLIEVY 358 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 358 (359)
++.++|+++||+++++.... .....+.++
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~ 302 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIAR 302 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEE
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEe
Confidence 99999999999999998653 334444443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-16 Score=137.47 Aligned_cols=150 Identities=13% Similarity=0.092 Sum_probs=114.0
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--C
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~ 252 (359)
++..+. .+.+..+|||||||+|.++..+++. +..+++++|++. +++.|++ .++++++.+|+.+ +++ .
T Consensus 37 ~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 37 ALSFID-NLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 344443 2456789999999999999999998 788999999954 8877662 3679999999965 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++|++ +. ..+|++++++|+| ||.+++.+.......... .....+. ......++.+++.
T Consensus 115 fD~i~~~~~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~ 180 (267)
T 3kkz_A 115 LDLIWSEGAIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---EINDFWM-----DAYPEIDTIPNQV 180 (267)
T ss_dssp EEEEEESSCGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---HHHHHHH-----HHCTTCEEHHHHH
T ss_pred EEEEEEcCCceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---HHHHHHH-----HhCCCCCCHHHHH
Confidence 9999999999999 33 5699999999999 999999998755443221 1111110 1112456899999
Q ss_pred HHHHHcCCceeEEEEeC
Q 018205 333 KLFLDAGFSHFKITPVY 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
++|+++||+++++...+
T Consensus 181 ~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 181 AKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHTTEEEEEEEECC
T ss_pred HHHHHCCCEEEEEEECC
Confidence 99999999999988764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=136.51 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=112.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC-CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP-PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p-~~D~i~ 257 (359)
..+++.+. ..+..+|||||||+|.++..+++ ++.+++++|++. +++.++. ..++++..+|+.+ +.+ .||+|+
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 56666665 55678999999999999999998 688999999954 8877763 3689999999965 333 499999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh-------hhcCCcccCHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM-------VAVRGSERTEKE 330 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~t~~~ 330 (359)
+++++|++++. ..+|++++++|+| ||.+++.......... . ...+...... .......++.++
T Consensus 123 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 123 SNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGGKGNIKY---I--LEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTTTHH---H--HHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred EcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecCCcchHH---H--HHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 99999999766 4699999999999 8888887654332111 0 0011111000 001123568999
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999999887655
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=130.35 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=113.2
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCCCccEEEEcc
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p~~D~i~~~~ 260 (359)
+++.++ ..+..+|||+|||+|.++..+++... +++++|++. +++.+++ .+++++..+| .. +...||+|+++.
T Consensus 9 ~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH--SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEES
T ss_pred HHHhcC--cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEcc
Confidence 444454 55678999999999999999999873 899999954 7777764 5789999999 22 223599999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
++|++++. ..++++++++|+| ||.+++.+.........+ .....++.++|.++|+ ||
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~--Gf 140 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKD---DGRVIIIDWRKENTGIGP----------------PLSIRMDEKDYMGWFS--NF 140 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSS----------------CGGGCCCHHHHHHHTT--TE
T ss_pred chhcccCH--HHHHHHHHHhcCC---CCEEEEEEcCccccccCc----------------hHhhhcCHHHHHHHHh--Cc
Confidence 99999765 5699999999999 999999887765433211 0013368999999998 99
Q ss_pred ceeEEEEeCCceeEEEE
Q 018205 341 SHFKITPVYGIKSLIEV 357 (359)
Q Consensus 341 ~~~~~~~~~~~~~vi~~ 357 (359)
+++++.........+.+
T Consensus 141 ~~~~~~~~~~~~~~l~~ 157 (170)
T 3i9f_A 141 VVEKRFNPTPYHFGLVL 157 (170)
T ss_dssp EEEEEECSSTTEEEEEE
T ss_pred EEEEccCCCCceEEEEE
Confidence 99999998766555544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=132.05 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=108.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCC-CCC--CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
++..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..++++..+|+.+ +++ .||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45789999999999999999998 67999999954 7766552 2367999999965 333 499999
Q ss_pred EcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc---------------
Q 018205 258 FKAIFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV--------------- 321 (359)
Q Consensus 258 ~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 321 (359)
+..+++++++.+ ..++|++++++|+| ||.+++.+......... + .......+......
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKL--Y-RKRYLHDFPITKEEGSFLARDPETGETEF 180 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHH--H-HHHHHHHHHHHCSTTEEEEECTTTCCEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHH--H-HHHhhhhccchhhhcceEecccccCCcce
Confidence 999999997653 55799999999999 99999988766443221 1 11111111110000
Q ss_pred CCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 322 RGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 322 ~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
....++.++|.++|+++||+++++...
T Consensus 181 ~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 181 IAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 013679999999999999999888654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=140.15 Aligned_cols=215 Identities=9% Similarity=0.016 Sum_probs=135.1
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc-cCCCCChh
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL-KDKPYCLS 117 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~-~~~~~~~~ 117 (359)
++|..| . +|.|++|||+.+|+ +++.+++||+.|.+.|+++.. ++ |++|+.+..+. ..++....
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~~~~~~~~~ 110 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVAEYGIGKRY 110 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHHHHTCCCCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHHhcCccccc
Confidence 778888 5 69999999999999 789999999999999999875 35 99998765333 22211111
Q ss_pred hHHhhhc--Cccccc----chhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccc
Q 018205 118 PVVLTLT--DQVFVN----PCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI 191 (359)
Q Consensus 118 ~~~~~~~--~~~~~~----~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 191 (359)
......+ ....+. .|..+.+.++... .+ ...|+..+..++. .. ..++......
T Consensus 111 ~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~-------~~~~~~~~~~~~~--~~-----------~~~l~~~~~~ 169 (373)
T 2qm3_A 111 DFTCPHCQGKTVDLQAFADLLEQFREIVKDRP-EP-------LHEFDQAYVTPET--TV-----------ARVILMHTRG 169 (373)
T ss_dssp C------------CGGGHHHHHHHHHHHTTCC-CC-------CGGGTCCCBCHHH--HH-----------HHHHHHHHTT
T ss_pred cccchhhcCCCcchhhhHHHHHHHHHHHhcCC-cc-------chhcCCeecCHHH--HH-----------HHHHHHhhcC
Confidence 1110000 001111 1233444444321 10 0111110001110 00 0111101101
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC-----CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP-----PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p-----~~D~i~~~ 259 (359)
..+..+|||+| |+|.++..+++..|+.+++++|++ .+++.|++ ..+++++.+|+.+.+| .||+|+++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 22468999999 999999999999887899999994 58887762 2389999999976443 49999998
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..++.. ....+++++.++|+| ||++++++...
T Consensus 249 ~p~~~~---~~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 249 PPETLE---AIRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp CCSSHH---HHHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred CCCchH---HHHHHHHHHHHHccc---CCeEEEEEEec
Confidence 766543 246799999999999 89776666543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=137.86 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=108.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--CccE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PADA 255 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D~ 255 (359)
.+.+.++ ..+..+|||||||+|.++..+++..+. +++++|++. +++.|++ ..+++++.+|+.+ +++ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444444 346789999999999999999998654 899999954 8877663 4789999999955 443 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC------------CCcchHHHHHHHhhhhh-----hh
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE------------KKEDAQLTEAKLLYDML-----MM 318 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~------------~~~~~~~~~~~~~~~~~-----~~ 318 (359)
|++..++|++++. .++|++++++|+| ||.+++....... ....... ....+++.. ..
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHW-PVDRYFNESMRTSHFL 185 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEE-EECCTTCCCEEEEEET
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEE-EeccccccceEEEeec
Confidence 9999999999654 6699999999999 8888886543210 0000000 000000000 00
Q ss_pred -hhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 319 -VAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 319 -~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.......++.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 186 GEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp TEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 001112349999999999999999998855
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-16 Score=136.21 Aligned_cols=138 Identities=14% Similarity=0.263 Sum_probs=110.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+..+|||||||+|.++..+++.. ..+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 47899999999999999998876 56899999954 8877662 2358899999854 333 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
++++++...+|++++++|+| ||.+++.+....... .++. ......++.++|.++|+++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~----------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGV----------ILDD----VDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSE----------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCcc----------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence 99988778899999999999 999999887765411 1110 112335689999999999999999
Q ss_pred EEEEeC
Q 018205 344 KITPVY 349 (359)
Q Consensus 344 ~~~~~~ 349 (359)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 998764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=137.01 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=109.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~vl 262 (359)
..+..+|||||||+|.++..+++.+|. .+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999984 8999999954 7776652 3389999999965 333 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec-----CCCCcchHHHH---HHHhhhhhh--hhhcCCcccCHHHHH
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI-----NEKKEDAQLTE---AKLLYDMLM--MVAVRGSERTEKEWE 332 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~-----~~~~~~~~~~~---~~~~~~~~~--~~~~~g~~~t~~~~~ 332 (359)
+++++. .+++++++++|+| ||.+++.++.. .....+..... ...+..... ....+....+..++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 999776 4699999999999 99999988761 11000000000 001111111 111233455677899
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++|+++||+.+++...
T Consensus 175 ~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 175 IYLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHHTTCEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999998877543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-17 Score=145.10 Aligned_cols=155 Identities=14% Similarity=0.247 Sum_probs=106.9
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCC--------------------------
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDT-------------------------- 236 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~-------------------------- 236 (359)
++..+...+....+|||||||+|.++..+++.++..+++++|++. +++.|++.
T Consensus 36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (292)
T 3g07_A 36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEE 115 (292)
T ss_dssp GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-------------------------
T ss_pred HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 334444233457899999999999999999999999999999954 77665421
Q ss_pred --------------------------------------CCceEeeCCCCCCC--------CCccEEEEcchhccC----C
Q 018205 237 --------------------------------------DNLKFIAGDMFQSI--------PPADAFFFKAIFHAF----V 266 (359)
Q Consensus 237 --------------------------------------~~v~~~~~d~~~~~--------p~~D~i~~~~vl~~~----~ 266 (359)
.++++.++|+.... +.||+|+|..+++++ +
T Consensus 116 ~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~ 195 (292)
T 3g07_A 116 GTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWG 195 (292)
T ss_dssp --------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHH
T ss_pred ccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCC
Confidence 58999999996422 259999999999765 6
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHH--cCCceeE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLD--AGFSHFK 344 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~--aGf~~~~ 344 (359)
++...++|++++++|+| ||.+++....+.. +......... .........+..+++.++|.+ +||+.++
T Consensus 196 ~~~~~~~l~~~~~~Lkp---GG~lil~~~~~~~------y~~~~~~~~~-~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~ 265 (292)
T 3g07_A 196 DEGLKRMFRRIYRHLRP---GGILVLEPQPWSS------YGKRKTLTET-IYKNYYRIQLKPEQFSSYLTSPDVGFSSYE 265 (292)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEECCCHHH------HHTTTTSCHH-HHHHHHHCCCCGGGHHHHHTSTTTCCCEEE
T ss_pred HHHHHHHHHHHHHHhCC---CcEEEEecCCchh------hhhhhcccHH-HHhhhhcEEEcHHHHHHHHHhcCCCceEEE
Confidence 67888999999999999 7877774322211 1100000000 000011123457899999999 9998887
Q ss_pred EEEe
Q 018205 345 ITPV 348 (359)
Q Consensus 345 ~~~~ 348 (359)
+...
T Consensus 266 ~~~~ 269 (292)
T 3g07_A 266 LVAT 269 (292)
T ss_dssp EC--
T ss_pred Eecc
Confidence 7654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=134.96 Aligned_cols=141 Identities=13% Similarity=0.048 Sum_probs=101.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C-------CCceEeeCCCCC-CCC--CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T-------DNLKFIAGDMFQ-SIP--PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~-------~~v~~~~~d~~~-~~p--~~D~i~ 257 (359)
.+..+|||||||+|.++..+++..|..+++++|++. +++.|++ . .+++++.+|+.. +.+ .||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 107 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence 456899999999999999999998888999999954 8877652 1 279999999844 222 599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH-HhhhhhhhhhcCCcccCHHHHH----
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK-LLYDMLMMVAVRGSERTEKEWE---- 332 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~t~~~~~---- 332 (359)
+..++|++++++..++|++++++|+| ||.+++.. ..... ... ......+........++.+++.
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTP-NIEYN-------VKFANLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE-BHHHH-------HHTC-----------CCSCBCHHHHHHHHH
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEcc-Ccccc-------hhhcccccccccccccccccCHHHHHHHHH
Confidence 99999999988888999999999999 78555443 21110 000 0000001111223457899998
Q ss_pred HHHHHcCCceeE
Q 018205 333 KLFLDAGFSHFK 344 (359)
Q Consensus 333 ~ll~~aGf~~~~ 344 (359)
++++++||++..
T Consensus 177 ~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 177 KITERFAYNVQF 188 (217)
T ss_dssp HHHHHSSEEEEE
T ss_pred HHHHHcCceEEE
Confidence 999999998644
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=134.76 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=109.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCCC--CccEEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSIP--PADAFF 257 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~p--~~D~i~ 257 (359)
..+++.+. ..+..+|||||||+|.++..+++.+|+.+++++|++. +++.+++ ..+++++.+|+.+..+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555555 4567899999999999999999999999999999954 8887763 5689999999965223 499999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHh--hhhhhhh--hcCCcccCHHHHHH
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLL--YDMLMMV--AVRGSERTEKEWEK 333 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~g~~~t~~~~~~ 333 (359)
++.++|++++. ..+|++++++|+| ||.+++.................... +...... ......++.++|.+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 99999999654 5699999999999 89988887543222111000000000 0000000 01234679999999
Q ss_pred HHHHcCCcee
Q 018205 334 LFLDAGFSHF 343 (359)
Q Consensus 334 ll~~aGf~~~ 343 (359)
+|+++||.+.
T Consensus 176 ~l~~aGf~v~ 185 (259)
T 2p35_A 176 ALSPKSSRVD 185 (259)
T ss_dssp HHGGGEEEEE
T ss_pred HHHhcCCceE
Confidence 9999999743
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-16 Score=132.29 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=102.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCC-----------CCceEeeCCCCC-CC--CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDT-----------DNLKFIAGDMFQ-SI--PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~-----------~~v~~~~~d~~~-~~--p~~D~i~ 257 (359)
.+..+|||||||+|.++..+++..|..+++++|++. +++.|++. .+++++.+|+.. +. ..||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 457899999999999999999998888999999955 88877631 289999999944 22 2599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH----H
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE----K 333 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~----~ 333 (359)
+..++|++++++..++|++++++|+| || +++............ ......+........++.+++. +
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG-~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRP---QT-VIVSTPNKEYNFHYG------NLFEGNLRHRDHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC---SE-EEEEEEBGGGGGCCC------CT-----GGGCCTTSBCHHHHHHHHHH
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCC---CE-EEEEccchhhhhhhc------ccCcccccccCceeeecHHHHHHHHHH
Confidence 99999999988888899999999999 77 444444332211000 0000001111223456888988 8
Q ss_pred HHHHcCCceeEE
Q 018205 334 LFLDAGFSHFKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
+++++||++...
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 899999976443
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=122.85 Aligned_cols=133 Identities=13% Similarity=0.156 Sum_probs=106.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAF 256 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i 256 (359)
..++..+. ++..+|||||||+|.++..+++. +.+++++|++. +++.++. ..+++++.+|+.+ +++ .||+|
T Consensus 37 ~~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i 111 (195)
T 3cgg_A 37 ARLIDAMA---PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI 111 (195)
T ss_dssp HHHHHHHS---CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE
T ss_pred HHHHHHhc---cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE
Confidence 44555543 46789999999999999999987 67999999954 7777663 4579999999965 444 49999
Q ss_pred EEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 257 FFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 257 ~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
++. .++|++++++...+|+++.++|+| ||.+++..... ..++.+++.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l 162 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVA 162 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHH
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHH
Confidence 998 899999888788999999999999 88888754221 124788999999
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+++||+++++...
T Consensus 163 ~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 163 ERVGLELENAFES 175 (195)
T ss_dssp HHHTEEEEEEESS
T ss_pred HHcCCEEeeeecc
Confidence 9999999888655
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=137.52 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=111.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC--CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS--IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~--~p- 251 (359)
.++..++ .++.+|||||||+|.++..+++. +.+++++|++. +++.|++ .++++++.+|+.+. ++
T Consensus 60 ~~l~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG---PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC---SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC---CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 4444444 34689999999999999999988 67999999954 8877763 26899999999552 22
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh--------hhcC
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM--------VAVR 322 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 322 (359)
.||+|++..++|++++. ..+|++++++|+| ||.+++............ .....+..... ....
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 206 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRP---GGVLSLMFYNAHGLLMHN---MVAGNFDYVQAGMPKKKKRTLSP 206 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEBHHHHHHHH---HHTTCHHHHHTTCCCC----CCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCC---CeEEEEEEeCCchHHHHH---HHhcCHHHHhhhccccccccCCC
Confidence 49999999999999766 5699999999999 899888876543211000 00000000000 0012
Q ss_pred CcccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 323 GSERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 323 g~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
...++.+++.++|+++||+++++..+..
T Consensus 207 ~~~~~~~~l~~~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 207 DYPRDPTQVYLWLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp SCCBCHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CCCCCHHHHHHHHHHCCCceeeeeeEEE
Confidence 2467899999999999999999887754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-15 Score=128.97 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=108.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC-CCC--Ccc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ-SIP--PAD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~-~~p--~~D 254 (359)
..+...++ ..+..+|||||||+|.++..+++... .+++++|++. +++.+++ ..+++++.+|+.+ +++ .||
T Consensus 33 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 33 PALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 34555555 44678999999999999999998732 2899999954 7776652 3479999999955 343 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC---CCcchHHHH-------HHHhhh-----hhhhh
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE---KKEDAQLTE-------AKLLYD-----MLMMV 319 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~---~~~~~~~~~-------~~~~~~-----~~~~~ 319 (359)
+|++..++|++++. ..+|++++++|+| ||.+++....... ......... ....+. .....
T Consensus 110 ~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (243)
T 3bkw_A 110 LAYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA 184 (243)
T ss_dssp EEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH
T ss_pred EEEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc
Confidence 99999999999754 5699999999999 8988887643210 000000000 000000 00000
Q ss_pred -hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 320 -AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 320 -~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
......++.++|.++|+++||+++++...
T Consensus 185 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 185 KGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred CceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 11223468999999999999999998765
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.5e-15 Score=132.06 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=113.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-------ccccCCC-------CCCceEeeCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-------VVPKVPD-------TDNLKFIAGD- 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-------~~~~a~~-------~~~v~~~~~d- 245 (359)
..+++.+. ..+..+|||||||+|.++..+++.+ |+.+++++|++. +++.|++ .+++++..+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 35566665 5677899999999999999999995 778999999954 6666552 2579999998
Q ss_pred CCC-C--CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHH-HHhhhhhh--
Q 018205 246 MFQ-S--IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA-KLLYDMLM-- 317 (359)
Q Consensus 246 ~~~-~--~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~-~~~~~~~~-- 317 (359)
+.. . ++ .||+|++..++|++++... +++.+.++++| ||.+++.+...+...... .... .......+
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~--~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANA--LALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHH--HHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHH--HHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 532 2 23 4999999999999987753 78888888887 899999998876543221 1110 00110000
Q ss_pred hh----hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 318 MV----AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 318 ~~----~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.. ......++.++|.++++++||+++++...
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 01124679999999999999999888766
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-16 Score=133.03 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=109.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC----C-C-CC-c
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----S-I-PP-A 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~-~-p~-~ 253 (359)
..++..+. ..+..+|||||||+|.++..+++. +.+++++|++. +++.+++..++.+..+|+.+ + . .. |
T Consensus 42 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 42 QAILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCc
Confidence 34555554 345689999999999999999988 67999999955 88888766788898888733 1 1 23 9
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh------hcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV------AVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~t 327 (359)
|+|++.+++| ..+. ..+|++++++|+| ||.+++.+.......... +.. .+....... ......++
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQD--GWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CSC--EEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-ccc--ccchhhhhccccCcccceEEEec
Confidence 9999999999 5444 5699999999999 899998886654332110 000 000000000 01123569
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|.++|+++||+++++...
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~~ 209 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQEP 209 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEecC
Confidence 999999999999999998763
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=129.99 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=103.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcc-hhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKA-IFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~-vl~~ 264 (359)
+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 56899999954 8877763 2279999999955 333 599999998 9999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCc---chHH----HH---H--------HHhhhhhhhhhcC---
Q 018205 265 FVD-EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE---DAQL----TE---A--------KLLYDMLMMVAVR--- 322 (359)
Q Consensus 265 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~---~~~~----~~---~--------~~~~~~~~~~~~~--- 322 (359)
+++ ++..++|++++++|+| ||.+++.......... ...+ .. . .......+....+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFY 191 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcc
Confidence 953 5678899999999999 7877763322110000 0000 00 0 0000000000001
Q ss_pred --------CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 323 --------GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 323 --------g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...++.++|.++|+++||+++++...
T Consensus 192 ~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 225 (246)
T 1y8c_A 192 KRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC 225 (246)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred cccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence 24569999999999999999999765
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=129.22 Aligned_cols=146 Identities=14% Similarity=0.146 Sum_probs=103.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
..+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 67899999954 7776652 4689999999955 343 39999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc----CCcccCHHHHHHHHHHc
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV----RGSERTEKEWEKLFLDA 338 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~t~~~~~~ll~~a 338 (359)
|++++. ..++++++++|+| ||.+++. ...........+ ...+......... ....++.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAEASPEWTL--QERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEECCCHHHHH--HHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCCccHHHHH--HHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999764 5699999999999 8888887 222211110000 0001111100000 12356889999999999
Q ss_pred CCceeEEEE
Q 018205 339 GFSHFKITP 347 (359)
Q Consensus 339 Gf~~~~~~~ 347 (359)
||+++.+..
T Consensus 187 Gf~~~~~~~ 195 (263)
T 2yqz_A 187 GLKPRTREV 195 (263)
T ss_dssp TCCCEEEEE
T ss_pred CCCcceEEE
Confidence 999776543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=126.30 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=101.4
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchHH
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~~ 270 (359)
..+|||||||+|.++..+++. +++|++. +++.++.. +++++.+|+.+ +++ .||+|++.+++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 689999999999999988654 9999955 88777654 79999999855 343 49999999999999765
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 271 LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 271 ~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
..+|+++.++|+| ||.+++.+...... ....................++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKK---GGYLIVGIVDRESF-----LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEE---EEEEEEEEECSSSH-----HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCC---CcEEEEEEeCCccH-----HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 5699999999999 89888877654321 1011000000000011235679999999999999999988766
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=122.29 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=109.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p-~ 252 (359)
..+++.++ ..+..+|||+|||+|.++..+++. +.+++++|++. +++.+++ ..++++..+|+.+ +.+ .
T Consensus 22 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 97 (199)
T 2xvm_A 22 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ 97 (199)
T ss_dssp HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence 35555555 445679999999999999999987 67999999954 8877652 2479999999855 333 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++..++|++++++...++++++++|+| ||.+++++.......... ......++.+++.
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~ 159 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELR 159 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHH
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHH
Confidence 9999999999999877788899999999999 899888877654432110 0112356889999
Q ss_pred HHHHHcCCceeEEEEe
Q 018205 333 KLFLDAGFSHFKITPV 348 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~ 348 (359)
++|++ |++++....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99976 998877643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-15 Score=129.07 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=107.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC-CCC-------CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ-SIP-------PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~-~~p-------~~D~i~~~ 259 (359)
..+..+|||||||+|.++..+++..+ +++++|++. +++.++ ...+++++++|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999976 799999955 887765 24589999999965 221 28999999
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH----HhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK----LLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
.++|++++++..++|++++++|+| ||.+++.+....+........... ......+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999977888999999999999 999999987654321000000000 0000000000111246899999999
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
+||+++.....
T Consensus 209 --aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 --PDFEILSQGEG 219 (245)
T ss_dssp --TTEEEEEEECC
T ss_pred --CCCEEEecccc
Confidence 99999886554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=126.36 Aligned_cols=95 Identities=19% Similarity=0.382 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcc-hhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKA-IFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~-vl~ 263 (359)
.+..+|||||||+|.++..+++. .+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34589999999999999999876 6899999954 8877762 3579999999855 333 499999986 999
Q ss_pred cC-CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 264 AF-VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 264 ~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++ +.++..++|++++++|+| ||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTD---GGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 98 456678899999999999 7877763
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=128.86 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDE 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~ 268 (359)
....+|||||||+|.++..|++.+ .+++++|+++ |++.|++..+++++++|+.+ +++ .||+|++..++|+++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~- 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL- 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH-
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH-
Confidence 345799999999999999999874 5799999965 99999988999999999955 455 3999999999987753
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 269 DCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 269 ~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.+++++++++|+| ||.+++.......
T Consensus 115 --~~~~~e~~rvLkp---gG~l~~~~~~~~~ 140 (257)
T 4hg2_A 115 --DRFWAELRRVARP---GAVFAAVTYGLTR 140 (257)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECCCB
T ss_pred --HHHHHHHHHHcCC---CCEEEEEECCCCC
Confidence 3589999999999 9999888866543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=124.51 Aligned_cols=152 Identities=18% Similarity=0.266 Sum_probs=108.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---CCC--CccE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---SIP--PADA 255 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~~p--~~D~ 255 (359)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|++. +++.++... .++..+|+.+ +++ .||+
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCE
Confidence 45555554 45789999999999999999988 4 8999999955 777766432 3788888854 233 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh------hhhhcCCcccCHH
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML------MMVAVRGSERTEK 329 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~t~~ 329 (359)
|++.+++|++++. ..+|++++++|+| ||.+++..+....... . ........ .........++.+
T Consensus 97 v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 97 VIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPNVSHISV---L--APLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEECTTSHHH---H--HHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCCcchHHH---H--HHHhcCCceeccCCCCCcceEEEecHH
Confidence 9999999999876 4699999999999 8988887755432110 0 00000000 0001122457999
Q ss_pred HHHHHHHHcCCceeEEEEeC
Q 018205 330 EWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~~ 349 (359)
+|.++|+++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999999888763
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=130.85 Aligned_cols=142 Identities=14% Similarity=0.158 Sum_probs=94.4
Q ss_pred CCCeEEEeCCCcchHHH----HHHHHCCCCeE--EEeeccc-ccccCCC-------CCCce--EeeCCCCC-C------C
Q 018205 194 GLGSLVDVGGGTGSFAR----IISEAFPGIKC--TVLDLPH-VVPKVPD-------TDNLK--FIAGDMFQ-S------I 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~--~~~D~~~-~~~~a~~-------~~~v~--~~~~d~~~-~------~ 250 (359)
+..+|||||||+|.++. .++.++|+.++ +++|++. |++.|++ ..+++ +..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45799999999997554 45566688754 9999965 8886652 12343 44555522 1 2
Q ss_pred C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 251 P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 251 p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
+ .||+|++++++|+++|. .++|++++++|+| ||.+++...... .. +......+.-.+........++.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGS-SG----WDKLWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTT-SH----HHHHHHHHGGGSCCCTTCCCCCH
T ss_pred CCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCC---CcEEEEEEecCC-cc----HHHHHHHHHHhccCCCcccCCCH
Confidence 2 49999999999999876 4599999999999 999999865421 11 11110000000000001245789
Q ss_pred HHHHHHHHHcCCceeEE
Q 018205 329 KEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~~ 345 (359)
++|.++|+++||+.+..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=128.21 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=103.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------------------CCCceEeeCCCCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------------------TDNLKFIAGDMFQ 248 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------------------~~~v~~~~~d~~~ 248 (359)
.+..+|||+|||+|..+..|++. +.+|+|+|+++ +++.|++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 67999999965 8876631 2579999999976
Q ss_pred -CC---CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 249 -SI---PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 249 -~~---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+. ..||+|++..+|+++++++..+++++++++|+| ||.++++.......... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 32 359999999999999988888899999999999 89987766553321100 0011
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEe
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++.+++.++|.. +|+++.....
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEecc
Confidence 2589999999987 5998777654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=120.43 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=99.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC-CCC--CccEEEEc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFK 259 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~ 259 (359)
.+++.+. ...+..+|||||||+|.++..++ .+++++|++.. ++++..+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 4555543 13456899999999999988773 57999999654 67888999865 343 49999999
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.++| +.+ ...+|++++++|+| ||.+++.+.... ..+.++|.++|+++|
T Consensus 123 ~~l~-~~~--~~~~l~~~~~~L~~---gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~~G 170 (215)
T 2zfu_A 123 LSLM-GTN--IRDFLEEANRVLKP---GGLLKVAEVSSR--------------------------FEDVRTFLRAVTKLG 170 (215)
T ss_dssp SCCC-SSC--HHHHHHHHHHHEEE---EEEEEEEECGGG--------------------------CSCHHHHHHHHHHTT
T ss_pred hhcc-ccC--HHHHHHHHHHhCCC---CeEEEEEEcCCC--------------------------CCCHHHHHHHHHHCC
Confidence 9998 443 46799999999999 899998763210 127899999999999
Q ss_pred CceeEEEEeCCceeEEEEe
Q 018205 340 FSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~~~vi~~~ 358 (359)
|++++.........++.++
T Consensus 171 f~~~~~~~~~~~~~~~~~~ 189 (215)
T 2zfu_A 171 FKIVSKDLTNSHFFLFDFQ 189 (215)
T ss_dssp EEEEEEECCSTTCEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEE
Confidence 9998877666666666655
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=134.40 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=107.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC----CC----CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----SI----PP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~~----p~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|++. +++.|++. .+......+.. .. ..
T Consensus 97 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 97 RDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCC
Confidence 45666665 566789999999999999999987 56899999965 88877654 34333332211 11 24
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++.+++||+++. ..+|++++++|+| ||.+++..+..... ... ..++. ....+...++.++|.
T Consensus 172 fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~------~~~-~~~~~--~~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDI------VAK-TSFDQ--IFDEHFFLFSATSVQ 237 (416)
T ss_dssp EEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHH------HHH-TCGGG--CSTTCCEECCHHHHH
T ss_pred EEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHh------hhh-cchhh--hhhhhhhcCCHHHHH
Confidence 9999999999999755 5699999999999 88888865443211 010 11111 112344568999999
Q ss_pred HHHHHcCCceeEEEEeC
Q 018205 333 KLFLDAGFSHFKITPVY 349 (359)
Q Consensus 333 ~ll~~aGf~~~~~~~~~ 349 (359)
++|+++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=128.06 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=83.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCC-CC--------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQ-SI--------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~-~~--------p~~ 253 (359)
.+..+|||||||+|.++..+++.+ +..+++++|++. +++.|++ ..+++++++|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 889999999955 8887752 5799999999965 22 249
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|+|++..++|++ +. .+++++++++|+| ||.+++.+..
T Consensus 115 D~V~~~~~l~~~-~~--~~~l~~~~~~Lkp---gG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-DF--EKFQRSAYANLRK---DGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-CH--HHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred eEEeHhhHHHHh-CH--HHHHHHHHHhcCC---CcEEEEEecC
Confidence 999999999999 44 6799999999999 8999885544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=126.66 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=102.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CC-------------------------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TD------------------------------- 237 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~------------------------------- 237 (359)
.+..+|||||||+|.++..+++..+ .+++++|++. +++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3567999999999999999888755 5899999965 7777642 11
Q ss_pred -Cc-eEeeCCCCCC-C------CCccEEEEcchhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 238 -NL-KFIAGDMFQS-I------PPADAFFFKAIFHAFVD--EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 238 -~v-~~~~~d~~~~-~------p~~D~i~~~~vl~~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
++ +++.+|+.+. . ..||+|++..++|+++. ++...+|++++++|+| ||.+++.+......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~------ 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY------ 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE------
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce------
Confidence 17 8999998652 1 24999999999995543 3667899999999999 89988887443211
Q ss_pred HHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 307 TEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
+...- .......++.+++.++|+++||+++++....
T Consensus 205 ------~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 ------YMIGE-QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp ------EEETT-EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ------EEcCC-ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00000 0011234688999999999999999888764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.50 E-value=9.1e-15 Score=129.97 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=98.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C-------------------------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T------------------------------- 236 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~------------------------------- 236 (359)
.+..+|||||||+|.++..++... ..+++++|+++ +++.|++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 456799999999998877666542 12699999965 8876542 0
Q ss_pred CCce-EeeCCCCCC-------CCCccEEEEcchhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH
Q 018205 237 DNLK-FIAGDMFQS-------IPPADAFFFKAIFHAFV--DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306 (359)
Q Consensus 237 ~~v~-~~~~d~~~~-------~p~~D~i~~~~vl~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~ 306 (359)
.+++ ++++|+.+. .+.||+|+++.+||+.. .++..++|++++++||| ||.+++.+.......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~~----- 204 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSY----- 204 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEE-----
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCccc-----
Confidence 0133 888998652 23599999999999853 35667899999999999 899988765432110
Q ss_pred HHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 307 TEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
...-. ......++.+++.++|+++||+++++....
T Consensus 205 -----~~g~~---~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 205 -----MVGKR---EFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp -----EETTE---EEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred -----eeCCe---EeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 00000 011124689999999999999999887653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-13 Score=111.42 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCCCC--CccEEEEcchhccCCch-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSIP--PADAFFFKAIFHAFVDE- 268 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~~~~~- 268 (359)
.+..+|||+|||+|.++..+++.. +++++|++. +++. .++++++.+|+.++.+ .||+|+++..++..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345799999999999999999886 999999955 7777 5689999999977555 49999999888865543
Q ss_pred ------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 269 ------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 269 ------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+...+++++.+.+ | ||.+++..... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 3456889999999 8 89998866321 14567889999999998
Q ss_pred eEEEEe-CCceeEEEE
Q 018205 343 FKITPV-YGIKSLIEV 357 (359)
Q Consensus 343 ~~~~~~-~~~~~vi~~ 357 (359)
..+... .+...++..
T Consensus 144 ~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 144 RILKVRKILGETVYII 159 (170)
T ss_dssp EEEEEEECSSSEEEEE
T ss_pred EEEEeeccCCceEEEE
Confidence 888766 344444443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=118.32 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=103.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC-CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP-PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++ .+..+++++|++. +++.|++ ..++++..+|+.+..+ .||+|+++..+++
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4578999999999999999876 4667999999954 8877762 2249999999976443 5999999888765
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+ ..++++++++|+| ||.+++.+.... +.+++.++++++||+.++
T Consensus 138 ~-----~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 138 L-----LDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQIDL 181 (205)
T ss_dssp H-----HHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEEE
T ss_pred H-----HHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceEE
Confidence 3 5799999999999 888888553321 356788999999999999
Q ss_pred EEEeCCceeEEEEeC
Q 018205 345 ITPVYGIKSLIEVYP 359 (359)
Q Consensus 345 ~~~~~~~~~vi~~~~ 359 (359)
+.....+.+++.-+|
T Consensus 182 ~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 182 KMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEETTEEEEEEEEC
T ss_pred eeccCCEEEEEEecc
Confidence 998888888876554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-14 Score=121.33 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=105.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
.+..+|||+|||+|..+..++.. ++.+++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 45689999999999985544443 467999999955 8877663 3679999999965 443 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh-hhhcCCcccCHHHHHHHHHHcCCce
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM-MVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
+++.++..+++++++++|+| ||.+++.+...++.............+.... ........++.+++.++|.++||..
T Consensus 101 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 99877788999999999999 8999998877654321000000000000000 0001124679999999999999986
Q ss_pred eEEE
Q 018205 343 FKIT 346 (359)
Q Consensus 343 ~~~~ 346 (359)
.+..
T Consensus 178 ~~~~ 181 (209)
T 2p8j_A 178 KEDR 181 (209)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=122.77 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=107.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~ 253 (359)
..+++.++ ..+..+|||+|||+|.++..+++. +.+++++|++. +++.++. ..++++..+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 45555554 346789999999999999999988 66999999955 8877662 2389999999965 233 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|+++.++|++++++...++++++++|+| ||.++++..........+ ......++.+++.+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE 247 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence 999999999999988888999999999999 898787766544322110 01123467888988
Q ss_pred HHHHcCCceeEEE
Q 018205 334 LFLDAGFSHFKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
++.. |.++...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 8854 8887764
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=130.17 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=85.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ-S 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~-~ 249 (359)
+.+.+.++ ..+..+|||||||+|.++..+++. +.+++++|++. +++.|++ ..++.+..+|+.+ +
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 34444444 345789999999999999999998 55999999965 8877752 2577889999855 2
Q ss_pred ---CC--CccEEEEc-chhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 250 ---IP--PADAFFFK-AIFHAFVD-----EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 250 ---~p--~~D~i~~~-~vl~~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++ .||+|++. +++||+++ ++..++|++++++|+| ||.+++..+.
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 33 49999998 99999988 6678899999999999 8888887654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-14 Score=126.06 Aligned_cols=153 Identities=14% Similarity=0.027 Sum_probs=106.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CC-C--CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SI-P--PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~-p--~~D~i~~~~ 260 (359)
.+..+|||||||+|.++..+++. +..+++++|++. +++.|++ ..+++++.+|+.+ ++ + .||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 46789999999999999998876 455999999954 8877662 2468999999965 44 2 499999999
Q ss_pred hhcc--CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCc--------chHH----------HH-HHHhhhhhhhh
Q 018205 261 IFHA--FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKE--------DAQL----------TE-AKLLYDMLMMV 319 (359)
Q Consensus 261 vl~~--~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~--------~~~~----------~~-~~~~~~~~~~~ 319 (359)
++|+ ...++..++|++++++|+| ||.+++..+....... ...+ .. ....+.+.+..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 218 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLD 218 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETT
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEch
Confidence 9998 5566778899999999999 8988887754321000 0000 00 00000000000
Q ss_pred ---hcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 320 ---AVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 320 ---~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
......++.++|.++|+++||+++++....
T Consensus 219 ~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 219 SVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred hhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 011245689999999999999999887653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-12 Score=114.80 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=81.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D 254 (359)
.++.... ..+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 32 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 4444443 345689999999999999999987 67999999954 8877762 3479999999965 333 499
Q ss_pred EEEEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+|++. ..+++++.++..++|++++++|+| ||.+++.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 99986 566777777788999999999999 7877654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-14 Score=128.18 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=96.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C----------C---------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T----------D--------------------- 237 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~----------~--------------------- 237 (359)
+..+|||||||+|.+... +...+..+++++|+++ +++.|++ . .
T Consensus 71 ~~~~vLDiGcG~G~~~~l-~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLL-SACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGT-TGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHH-hhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 568999999999995543 3333456999999965 8875542 0 0
Q ss_pred -CceEeeCCCCCC-------CCC--ccEEEEcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH
Q 018205 238 -NLKFIAGDMFQS-------IPP--ADAFFFKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ 305 (359)
Q Consensus 238 -~v~~~~~d~~~~-------~p~--~D~i~~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~ 305 (359)
.++++.+|+.+. ++. ||+|+++.+||++.++ +..++|++++++|+| ||.+++.+........
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~~~--- 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYL--- 223 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEE---
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcceEE---
Confidence 134566688542 222 9999999999995533 667899999999999 8999987644321100
Q ss_pred HHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 306 LTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
..+. ......++.++|.++|+++||+++++....
T Consensus 224 ------~~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 224 ------AGEA----RLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ------ETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------cCCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0000 011235689999999999999998887654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=117.93 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=96.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc----CC------CCCCceEeeCCCCC-CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK----VP------DTDNLKFIAGDMFQ-SI 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~----a~------~~~~v~~~~~d~~~-~~ 250 (359)
..+..+. ..+..+|||||||+|.++..+++.+|+.+++++|++. +++. |+ ..++++++.+|+.+ ++
T Consensus 18 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~ 95 (218)
T 3mq2_A 18 AEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP 95 (218)
T ss_dssp HHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred HHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence 3444444 4567899999999999999999999999999999955 6664 22 24589999999965 33
Q ss_pred C-CccEEE---Ecchhc--cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCc
Q 018205 251 P-PADAFF---FKAIFH--AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGS 324 (359)
Q Consensus 251 p-~~D~i~---~~~vl~--~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (359)
+ ..|.|+ ....++ ++++. ..+|++++++|+| ||.+++............ . ..+. .....
T Consensus 96 ~~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~----~~~~~ 160 (218)
T 3mq2_A 96 LSGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSVP---E---VGEH----PEPTP 160 (218)
T ss_dssp CCCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBCG---G---GTTC----CCCCH
T ss_pred CCCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEecccccccccc---c---cccC----Cccch
Confidence 3 125554 222332 44444 4699999999999 888887332221111100 0 0000 00111
Q ss_pred ccCHHHHHHHHHHcCCceeEEEEe
Q 018205 325 ERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 325 ~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+..+++.++++++||++.++...
T Consensus 161 ~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 161 DSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCceeeecc
Confidence 223456888999999999888765
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=111.82 Aligned_cols=120 Identities=16% Similarity=0.244 Sum_probs=95.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCC---CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSI---PP 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~---p~ 252 (359)
.++..+. ..+..+|||+|||+|.++..+++..|..+++++|++. +++.|++ .++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 4555665 5677899999999999999999999999999999954 8877763 368999999996533 45
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
||+|++...++ +..++++++.++|+| ||.+++...... +.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHHH
Confidence 99999988775 345799999999999 899888543210 345677
Q ss_pred HHHHHcCC
Q 018205 333 KLFLDAGF 340 (359)
Q Consensus 333 ~ll~~aGf 340 (359)
++++++||
T Consensus 153 ~~l~~~g~ 160 (204)
T 3e05_A 153 EFLEDHGY 160 (204)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88899998
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=116.17 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=99.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAF 256 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i 256 (359)
.++..+. .+..+|||||||+|.++..+ +. +++++|++. +++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~l~~~~---~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v 99 (211)
T 2gs9_A 28 RALKGLL---PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVV 99 (211)
T ss_dssp HHHHTTC---CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEE
T ss_pred HHHHHhc---CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEE
Confidence 3444443 36789999999999998877 45 899999954 8877663 3689999999965 444 49999
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh-hhhhhcCCcccCHHHHHHHH
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM-LMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~t~~~~~~ll 335 (359)
++.+++|++++. .++|++++++|+| ||.+++.+...... .......... ..........++.+++.++|
T Consensus 100 ~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l 169 (211)
T 2gs9_A 100 LLFTTLEFVEDV--ERVLLEARRVLRP---GGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALL 169 (211)
T ss_dssp EEESCTTTCSCH--HHHHHHHHHHEEE---EEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHH
T ss_pred EEcChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHh
Confidence 999999999765 5699999999999 89998887654321 1010000000 00001124568999999999
Q ss_pred HHcCCceeEEEE
Q 018205 336 LDAGFSHFKITP 347 (359)
Q Consensus 336 ~~aGf~~~~~~~ 347 (359)
+ | .+++..
T Consensus 170 ~--G--~~~~~~ 177 (211)
T 2gs9_A 170 G--P--PEAEGE 177 (211)
T ss_dssp C--S--CSEEEE
T ss_pred c--C--cceeEE
Confidence 8 7 444443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=116.69 Aligned_cols=141 Identities=21% Similarity=0.287 Sum_probs=99.8
Q ss_pred CCCeEEEeCCCc---chHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC-----CC----Ccc
Q 018205 194 GLGSLVDVGGGT---GSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS-----IP----PAD 254 (359)
Q Consensus 194 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~-----~p----~~D 254 (359)
+..+|||||||+ |.....+.+..|+.+++++|.+ .|++.|+. ..+++++++|+.+. .| .+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999997 3444444556899999999995 49998872 24799999999652 01 255
Q ss_pred -----EEEEcchhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCH
Q 018205 255 -----AFFFKAIFHAFVDED-CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTE 328 (359)
Q Consensus 255 -----~i~~~~vl~~~~~~~-~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~ 328 (359)
.|+++.+||++++++ ...++++++++|+| ||.|++.+...+.... ....+.+...........||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g~p~~~rs~ 229 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQ-----EVGRVAREYAARNMPMRLRTH 229 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHH-----HHHHHHHHHHHTTCCCCCCCH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHH-----HHHHHHHHHHhcCCCCccCCH
Confidence 688999999999875 47899999999999 8999888876543211 111111111111123456899
Q ss_pred HHHHHHHHHcCCceeE
Q 018205 329 KEWEKLFLDAGFSHFK 344 (359)
Q Consensus 329 ~~~~~ll~~aGf~~~~ 344 (359)
+++.++|. ||..++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999994 998543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-12 Score=111.22 Aligned_cols=140 Identities=11% Similarity=0.182 Sum_probs=98.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC----CCCCCceEeeCCCCC-----CC-CCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV----PDTDNLKFIAGDMFQ-----SI-PPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a----~~~~~v~~~~~d~~~-----~~-p~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..+++..+..+++++|++. +++.+ +...++.++.+|+.+ ++ ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 4567899999999999999999998877999999954 76543 345789999999854 12 2499998
Q ss_pred hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 261 IFHAFVDE-DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 261 vl~~~~~~-~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
|+++++ ....+++++.++|+| ||.+++. .......... .. . ....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~---~~----~----------~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTK---DP----K----------EIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSS---CH----H----------HHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCC---CH----H----------HhhHHHHH-HHHHCC
Confidence 444433 335679999999999 8888886 2211111000 00 0 01236777 899999
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|+.+++.....+ +.++.++
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~ 226 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEE
Confidence 999999887554 5555543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-13 Score=112.76 Aligned_cols=131 Identities=8% Similarity=0.075 Sum_probs=98.8
Q ss_pred eEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 197 SLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 197 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
+|||||||+|.++..+++. +.+++++|++. +++.|++ ..++++..+|+.+ +++ .||+|++. +.+++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999887 66999999954 8877763 2379999999965 444 49999985 345566
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEE
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITP 347 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~ 347 (359)
++...+|++++++|+| ||.+++.+........ ..... ......++.+++.++|+ ||+++++..
T Consensus 108 ~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY---------NTGGP---KDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG---------TSCCS---SSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEeccccccC---------CCCCC---CcceeecCHHHHHHHhc--CceEEEEEE
Confidence 6778899999999999 8998888766433210 00000 01124679999999998 999988765
Q ss_pred e
Q 018205 348 V 348 (359)
Q Consensus 348 ~ 348 (359)
.
T Consensus 171 ~ 171 (202)
T 2kw5_A 171 L 171 (202)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=116.13 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=103.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEc----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFK---- 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~---- 259 (359)
.+..+|||+|||+|..+..+++.+|+.+++++|++. +++.|+. ..+++++.+|+++..+ .||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 346799999999999999999999999999999955 8877662 2479999999976542 49999997
Q ss_pred ---------chhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 260 ---------AIFHAFVD----------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 260 ---------~vl~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
.++++.+. +....+++++.++|+| ||.+++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 34444331 3457799999999999 787776310
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
..+.+++.++++++||+.+++... .+...++.++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~ 274 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 274 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence 114577889999999998777654 6667777665
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=115.46 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=92.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-c-ccccC---CC------CCCceEeeCCCCCCCCC--ccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-H-VVPKV---PD------TDNLKFIAGDMFQSIPP--ADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~-~~~~a---~~------~~~v~~~~~d~~~~~p~--~D~i~~~ 259 (359)
.+..+|||||||+|.++..++++.|+.+++|+|++ + |++.| ++ ..++.++.+|+.+ +|. +|.|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~-l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES-LPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB-CCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH-hhhhccCeEEEE
Confidence 45679999999999999999998999999999996 5 54444 42 3579999999944 342 4666555
Q ss_pred chhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 260 AIFHAFVDE------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 260 ~vl~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
.+.+.|+.. +...+|++++++|+| ||.+++........... .. ....... ........+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~----~~-~~~~~~~---~~~~~~~~~el~~ 170 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDSYEEA----EI-KKRGLPL---LSKAYFLSEQYKA 170 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEeccccchhc----hh-hhcCCCC---CChhhcchHHHHH
Confidence 544333321 113589999999999 89888844333221100 00 0000000 0001112235999
Q ss_pred HHHHcCCceeEEEEeC
Q 018205 334 LFLDAGFSHFKITPVY 349 (359)
Q Consensus 334 ll~~aGf~~~~~~~~~ 349 (359)
+++++||.+..+....
T Consensus 171 ~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHTCEEEEEEEEC
T ss_pred HHHHcCCCeeeeeecC
Confidence 9999999998887664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-13 Score=114.92 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
..+..+|||||||+|.++..+++.. .+++++|++. +++.++ ...+++++.+|+.+..+ .||+|++++++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3456899999999999999999884 5899999954 777665 34589999999966323 4999999999999
Q ss_pred CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 265 FVD-EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 265 ~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+++ +...++|++++++|+| ||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEecC
Confidence 986 4556899999999999 8888886653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-13 Score=131.00 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=84.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------------CCCceEeeCCCCC-CCC--CccE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------------TDNLKFIAGDMFQ-SIP--PADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------------~~~v~~~~~d~~~-~~p--~~D~ 255 (359)
.+..+|||||||+|.++..+++.. |..+++++|++. +++.|++ ..+++++.+|+.+ +.+ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999987 567999999965 8877743 3579999999965 333 4999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|++..++||++++....++++++++|+| | .++|..+..
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECBG
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecCc
Confidence 9999999999998888899999999999 6 666666543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=117.20 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=98.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CC-------CceEeeCCCCC---------CCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TD-------NLKFIAGDMFQ---------SIP 251 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~-------~v~~~~~d~~~---------~~p 251 (359)
+..+|||||||+|..+..++... ..+++|+|+++ +++.|++ .. ++++.+.|+.. .++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999998777666543 46899999965 9988873 11 25677777721 123
Q ss_pred --CccEEEEcchhccC-CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc----------h-HHHH-HHHh----
Q 018205 252 --PADAFFFKAIFHAF-VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED----------A-QLTE-AKLL---- 312 (359)
Q Consensus 252 --~~D~i~~~~vl~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~----------~-~~~~-~~~~---- 312 (359)
.||+|+|..++|+. ..++..++|++++++|+| ||.+++..+....-... . .+.. ....
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 49999999999984 444567899999999999 89988876642210000 0 0000 0000
Q ss_pred hhhhh-hhhcC------CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 313 YDMLM-MVAVR------GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 313 ~~~~~-~~~~~------g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+... ....+ -...+.+++.++++++||+++.....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 00001 12567899999999999999888654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-13 Score=119.42 Aligned_cols=96 Identities=20% Similarity=0.297 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCcch----HHHHHHHHCC----CCeEEEeeccc-ccccCCCC----------------------------
Q 018205 194 GLGSLVDVGGGTGS----FARIISEAFP----GIKCTVLDLPH-VVPKVPDT---------------------------- 236 (359)
Q Consensus 194 ~~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~~~-~~~~a~~~---------------------------- 236 (359)
+..+|+|+|||+|. +++.|++..| +.+++++|++. +++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6666777654 46899999965 88876521
Q ss_pred ---------CCceEeeCCCCC-CCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 237 ---------DNLKFIAGDMFQ-SIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 237 ---------~~v~~~~~d~~~-~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+|.|.++|+.+ +++ .||+|+|.+++++++++...+++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 268999999977 354 49999999999999988888999999999999 787776
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-12 Score=107.58 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=92.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cc----ccCCCCCCceEeeCCCCCC-----CC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VV----PKVPDTDNLKFIAGDMFQS-----IP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~----~~a~~~~~v~~~~~d~~~~-----~p-~~D~i~~~~ 260 (359)
..+..+|||+|||+|.++..+++..++.+++++|+++ ++ +.|+...++.++.+|+... ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 4567899999999999999999998767999999964 43 4444456789999988542 22 49999986
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH----HHHHH
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW----EKLFL 336 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~----~~ll~ 336 (359)
+.+ .++...++++++++|+| ||.+++.-.... .+. ..+.+++ .+.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~--------------~~~---------~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARS--------------IDS---------TAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------HCT---------TSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCC--------------ccc---------cCCHHHHHHHHHHHHH
Confidence 222 23344569999999999 898888732210 000 0122222 12378
Q ss_pred HcCCceeEEEEeCC---ceeEEEEe
Q 018205 337 DAGFSHFKITPVYG---IKSLIEVY 358 (359)
Q Consensus 337 ~aGf~~~~~~~~~~---~~~vi~~~ 358 (359)
++ |++.+...... .+.++.++
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~ 208 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAY 208 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEE
Confidence 88 99999988732 44566654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.1e-12 Score=104.91 Aligned_cols=140 Identities=14% Similarity=0.291 Sum_probs=101.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CC--CceEeeCCCCCCCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TD--NLKFIAGDMFQSIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~--~v~~~~~d~~~~~p- 251 (359)
..+++.+. ..+..+|||+|||+|.++..+++. +.+++++|++ .+++.++. .. +++++.+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 35566665 456789999999999999999988 7799999995 47776652 23 49999999976543
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++...+|+ ..+....+++++.++|+| ||.+++....... ..+
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~----------------------------~~~ 165 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQG----------------------------AKS 165 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTHH----------------------------HHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCCC----------------------------hHH
Confidence 4999999888774 345567899999999999 8888887643211 123
Q ss_pred HHHHHHHcCCceeEEEEeCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPVYGIKSLIEVY 358 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 358 (359)
+.+.+++. |..+++......+.++.++
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~ 192 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSK 192 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEe
Confidence 55666666 6566666665555555554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=115.50 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---CCCceEeeCCCCC----C-CCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---TDNLKFIAGDMFQ----S-IPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---~~~v~~~~~d~~~----~-~p~ 252 (359)
..+++.++ ..+..+|||||||+|.++..++++ +.+++++|+++ |++.|++ ...+.....++.. . ...
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 45666666 667789999999999999999987 56899999965 8887763 1112222222211 1 125
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
||+|+++.++|++..++...+++++.++| | ||.+++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEecc
Confidence 99999999999999888889999999999 9 8988886543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=121.28 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=89.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------------CCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------------TDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------------~~~v~~~~~d 245 (359)
..+++.+. +.+..+|||||||+|..+..++...+..+++|+|+++ +++.|+. ..+|+++++|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 45666666 6778999999999999999999888766799999964 6665542 3689999999
Q ss_pred CCC-CC----CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 246 MFQ-SI----PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 246 ~~~-~~----p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
+++ ++ ..||+|+++++++ . ++..+.|+++++.|+| ||+|++.+...+...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 976 33 3599999987763 3 4556788999999999 999999988876543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=107.68 Aligned_cols=101 Identities=15% Similarity=0.269 Sum_probs=80.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCC----
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSI---- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~---- 250 (359)
.+++.+. ..+..+|||+|||+|.++..+++.+|+.+++++|++. +++.|++ .+++ ++.+|..+.+
T Consensus 16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 4455555 4567899999999999999999999999999999955 8877662 2377 8888885532
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
..||+|++...+++ ..+++++.++|+| ||.+++.+.
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 35999999999987 3489999999999 899888653
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-13 Score=113.62 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=90.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCCC-----CCceEeeCCCCCCC------
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPDT-----DNLKFIAGDMFQSI------ 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~-----~~v~~~~~d~~~~~------ 250 (359)
.+++.+. ...+..+|||+|||+|.++..+++.+|+.+++++|++ .+++.|+.. .+++++++|+.+.+
T Consensus 20 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 20 EAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 4444444 1256789999999999999999999999999999995 488888741 16888989886532
Q ss_pred -CCccEEEEcchhc------cCCchHH------------------HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH
Q 018205 251 -PPADAFFFKAIFH------AFVDEDC------------------LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ 305 (359)
Q Consensus 251 -p~~D~i~~~~vl~------~~~~~~~------------------~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~ 305 (359)
..||+|+++..++ +++++.. ..++++++++|+| ||.+++++...
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~-------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH-------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT--------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC--------
Confidence 3599999964433 2222211 6789999999999 89856654321
Q ss_pred HHHHHHhhhhhhhhhcCCcccCHHHHHHHHH--HcCCceeEEEEe-CCceeEEEE
Q 018205 306 LTEAKLLYDMLMMVAVRGSERTEKEWEKLFL--DAGFSHFKITPV-YGIKSLIEV 357 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~--~aGf~~~~~~~~-~~~~~vi~~ 357 (359)
...+++.++++ ++||..+++... .+...++.+
T Consensus 168 --------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~ 202 (215)
T 4dzr_A 168 --------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAV 202 (215)
T ss_dssp --------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEE
T ss_pred --------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEE
Confidence 13456777888 889988777766 334445444
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=109.54 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=82.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+.+..+|||+|||+|.++..+++..+. +++++|++. +++.+++ ..++++..+|+.+ +++ .||+|++..+++
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 356789999999999999999998654 899999954 7776652 3689999999965 444 499999999987
Q ss_pred cCC-------------chHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 264 AFV-------------DEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 264 ~~~-------------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
++. .++..++|+++.++|+| ||.+++.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 764 34567899999999999 89999877543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-13 Score=118.34 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=96.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
+..+|||||||+|.++..+++. +.+++++|++. +++.+++...-.++.+|+.+ +++ .||+|++..+++++.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5689999999999999999987 67899999954 88777632112388889855 443 49999998866665332
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc----hHHHHHHHhhhhhhhhhc------CCcccCHHHHHHHHHHcC
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKED----AQLTEAKLLYDMLMMVAV------RGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~g~~~t~~~~~~ll~~aG 339 (359)
...+|++++++|+| ||.+++........... ..+............... ....++.+++.++ +|
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---aG 204 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---EG 204 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---TT
T ss_pred HHHHHHHHHHHcCC---CeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHHh---cC
Confidence 56799999999999 89888876553210000 000000000000000000 0025688888877 99
Q ss_pred CceeEEEEeCC
Q 018205 340 FSHFKITPVYG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+++++.....
T Consensus 205 f~~~~~~~~~~ 215 (260)
T 2avn_A 205 FETVDIRGIGV 215 (260)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEECCCC
Confidence 99999887643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=110.75 Aligned_cols=125 Identities=19% Similarity=0.273 Sum_probs=97.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++..+ +++++|++ .+++.|++ ...+++..+|+.+.++ .||+|+++...+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4578999999999999999988754 99999994 48877662 1128999999855332 499999876554
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
....+++++.++|+| ||.+++...... +.+++.++++++||++++
T Consensus 196 ----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 196 ----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEEE
T ss_pred ----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEEE
Confidence 246799999999999 888888654321 356788999999999999
Q ss_pred EEEeCCceeEE
Q 018205 345 ITPVYGIKSLI 355 (359)
Q Consensus 345 ~~~~~~~~~vi 355 (359)
+.....+..++
T Consensus 241 ~~~~~~W~~l~ 251 (254)
T 2nxc_A 241 EAAEGEWVLLA 251 (254)
T ss_dssp EEEETTEEEEE
T ss_pred EeccCCeEEEE
Confidence 98887766554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=105.59 Aligned_cols=141 Identities=14% Similarity=0.141 Sum_probs=97.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCC----CCCCceEeeCCCCCC--CC----CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVP----DTDNLKFIAGDMFQS--IP----PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~----~~~~v~~~~~d~~~~--~p----~~D~i~~~ 259 (359)
+.++.+|||+|||+|.++..+++. .|+-+++++|++ .+++.++ +..++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999987 488899999995 4776544 467899999988542 11 38988763
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
+++. ++...+++++++.||| ||+++|......... .. ..-. ..++-.+.|+++|
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~-------~~----------p~~~--~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRD---GGYMLMAIKARSIDV-------TT----------EPSE--VYKREIKTLMDGG 208 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEE---EEEEEEEEECCHHHH-------HT----------CCCH--HHHHHHHHHHHTT
T ss_pred --ccCC--hhHHHHHHHHHHhccC---CCEEEEEEecccCCC-------CC----------ChHH--HHHHHHHHHHHCC
Confidence 3222 2345699999999999 899888653221110 00 0000 1133456779999
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|++.+...+..+ +.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 999999887442 5555543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.9e-12 Score=108.44 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=91.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-----ccccCCCCCCceEeeCCCCCC--C----CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-----VVPKVPDTDNLKFIAGDMFQS--I----PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-----~~~~a~~~~~v~~~~~d~~~~--~----p~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. |+.+++++|++. +++.|+...+++++.+|+.+. . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4567899999999999999999986 678999999963 344444457899999999652 2 249999985
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.. ..+....+++++.++|+| ||.+++ +.......... ... ..++ .+ .++|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~---------~~~-------~~~~-~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTA---------SAE-------AVFA-SE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSS---------CHH-------HHHH-HH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCC---------CHH-------HHHH-HH-HHHHHHCC
Confidence 44 223345579999999999 888877 33221000000 000 0011 23 58889999
Q ss_pred CceeEEEEeCC
Q 018205 340 FSHFKITPVYG 350 (359)
Q Consensus 340 f~~~~~~~~~~ 350 (359)
|+++++.....
T Consensus 209 f~~~~~~~~~~ 219 (233)
T 2ipx_A 209 MKPQEQLTLEP 219 (233)
T ss_dssp EEEEEEEECTT
T ss_pred CceEEEEecCC
Confidence 99999777643
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.6e-13 Score=118.18 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCC----CCCC-----CccEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMF----QSIP-----PADAF 256 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~----~~~p-----~~D~i 256 (359)
+..+|||+|||+|.++..++++.|+.+++++|++. +++.|++ .++++++.+|+. ++++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 56799999999999999999988889999999954 8877762 346999999853 2333 49999
Q ss_pred EEcchhccCCc-------------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC
Q 018205 257 FFKAIFHAFVD-------------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG 323 (359)
Q Consensus 257 ~~~~vl~~~~~-------------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
+++-.++.... +....++.+++++|+| ||.+.+++..... .........+.....+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~--------~~~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHD--------SLQLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHH--------HHHHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHH--------HHhcccceEEEEECCC
Confidence 99865554320 1123467889999999 8888776532211 0000000011111123
Q ss_pred cccCHHHHHHHHHHcCCceeEEEEe
Q 018205 324 SERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
...+.+++.++|+++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 3345688999999999998887766
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=103.84 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=92.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~p 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. +.+++++|++ .+++.|++ .++++++.+|+.+. .+
T Consensus 46 ~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 46 LTLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3455555 566789999999999999999988 7799999995 48877662 23899999999662 34
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++...+ +.. +++++.++|+| ||.+++...... +..++
T Consensus 122 ~~D~v~~~~~~------~~~-~l~~~~~~Lkp---gG~lv~~~~~~~----------------------------~~~~~ 163 (204)
T 3njr_A 122 LPEAVFIGGGG------SQA-LYDRLWEWLAP---GTRIVANAVTLE----------------------------SETLL 163 (204)
T ss_dssp CCSEEEECSCC------CHH-HHHHHHHHSCT---TCEEEEEECSHH----------------------------HHHHH
T ss_pred CCCEEEECCcc------cHH-HHHHHHHhcCC---CcEEEEEecCcc----------------------------cHHHH
Confidence 69999987644 123 99999999999 898887553210 23556
Q ss_pred HHHHHHcCCceeEEEE
Q 018205 332 EKLFLDAGFSHFKITP 347 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~ 347 (359)
.+++++.|+.+..+..
T Consensus 164 ~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 164 TQLHARHGGQLLRIDI 179 (204)
T ss_dssp HHHHHHHCSEEEEEEE
T ss_pred HHHHHhCCCcEEEEEe
Confidence 6788888988766543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=114.02 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=89.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-----CCCCceEeeCCCCC---CCC--CccEEEE---
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-----DTDNLKFIAGDMFQ---SIP--PADAFFF--- 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-----~~~~v~~~~~d~~~---~~p--~~D~i~~--- 258 (359)
.+..+|||||||+|..+..+++..|. +++++|++ .+++.|+ ...+++++.+|..+ .++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45689999999999999999887664 89999995 4888776 25577888888632 233 3888764
Q ss_pred --cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 259 --KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 259 --~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
...++++. +...++++++++||| ||.+++.+...... .....++ .......+.+...|.
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkP---GG~l~f~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKP---GGVLTYCNLTSWGE-------LMKSKYS-------DITIMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEE---EEEEEECCHHHHHH-------HTTTTCS-------CHHHHHHHHTHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCC---CCEEEEEecCCchh-------hhhhhhh-------hhhhhhHHHHHHHHH
Confidence 45566664 446699999999999 88877643221100 0000000 001112456777889
Q ss_pred HcCCceeEE
Q 018205 337 DAGFSHFKI 345 (359)
Q Consensus 337 ~aGf~~~~~ 345 (359)
++||+...+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999986544
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-12 Score=110.36 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=91.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CC-----CCccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SI-----PPADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~-----p~~D~i~~~ 259 (359)
.+..+|||||||+|..+..++...|+.+++++|++. +++.|++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 457899999999999999999988999999999955 8877662 3469999999844 22 249999997
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+ . +...+++.+.++|+| ||.+++...... . . ..+++.+.++++|
T Consensus 149 ~~----~--~~~~~l~~~~~~Lkp---gG~l~~~~g~~~----~----~------------------~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVKK---NGLFVALKAASA----E----E------------------ELNAGKKAITTLG 193 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEEE---EEEEEEEECC-C----H----H------------------HHHHHHHHHHHTT
T ss_pred cc----C--CHHHHHHHHHHhcCC---CCEEEEEeCCCc----h----H------------------HHHHHHHHHHHcC
Confidence 63 2 245799999999999 888887531110 0 0 1245778889999
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|.+.++...
T Consensus 194 ~~~~~~~~~ 202 (240)
T 1xdz_A 194 GELENIHSF 202 (240)
T ss_dssp EEEEEEEEE
T ss_pred CeEeEEEEE
Confidence 998887654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=103.83 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=89.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC---CCC-CccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ---SIP-PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~---~~p-~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..+++. +.+++++|+++ +++.|++ .++++++..|+.. ..+ .||+|+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 77999999955 8887762 3689999977643 123 399998763
Q ss_pred -hhccC------CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 261 -IFHAF------VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 261 -vl~~~------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
.+++. ..+....+|+++.++|+| ||.+++........... .. ....+|.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~~----------------~~~~~~~~ 154 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----EK----------------DAVLEYVI 154 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----HH----------------HHHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----HH----------------HHHHHHHH
Confidence 22220 224556789999999999 89988876543322111 00 12344556
Q ss_pred HHHHcCCceeEEEEe
Q 018205 334 LFLDAGFSHFKITPV 348 (359)
Q Consensus 334 ll~~aGf~~~~~~~~ 348 (359)
.+...+|.+......
T Consensus 155 ~l~~~~~~~~~~~~~ 169 (185)
T 3mti_A 155 GLDQRVFTAMLYQPL 169 (185)
T ss_dssp HSCTTTEEEEEEEES
T ss_pred hCCCceEEEEEehhh
Confidence 666678888877766
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=106.20 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=100.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC---CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP---PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p---~~D~i~~~~v 261 (359)
++..+|+|||||+|.++..+++..|..+++++|++ .+++.|++ .+++++..+|.++.++ .||+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 45689999999999999999999988899999995 48887762 4689999999987655 4999987665
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
- .+-...+|..+.+.|++ +|++++ .+.. ..+..+++|.+.||.
T Consensus 94 G----g~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTEE
T ss_pred C----hHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCCE
Confidence 3 24457799999999998 777666 3221 235577889999999
Q ss_pred eeEEEEe---CCceeEEEEe
Q 018205 342 HFKITPV---YGIKSLIEVY 358 (359)
Q Consensus 342 ~~~~~~~---~~~~~vi~~~ 358 (359)
+++-.-+ +-++.+|.+.
T Consensus 137 i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 137 IVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8876543 4467777664
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=105.74 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=94.2
Q ss_pred cCCCCeEEEeCCC-cchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCC--CCCCC--CccEEEEcc
Q 018205 192 FQGLGSLVDVGGG-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDM--FQSIP--PADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~--~~~~p--~~D~i~~~~ 260 (359)
..+..+|||+||| +|.++..+++.. +.+++++|++. +++.|++ ..+++++.+|+ +.+++ .||+|+++-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 77999999954 8877762 23799999996 23443 499999986
Q ss_pred hhccCCch-----------------HHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC
Q 018205 261 IFHAFVDE-----------------DCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG 323 (359)
Q Consensus 261 vl~~~~~~-----------------~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
.++..++. ....+++++.++|+| ||.+++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 66554331 136799999999999 898888532210
Q ss_pred cccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 324 SERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
...+++.+++++.||.+..+....+
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCC
Confidence 0246678899999998777765544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=112.42 Aligned_cols=156 Identities=14% Similarity=0.023 Sum_probs=105.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------------CCCceEeeCCCCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------------TDNLKFIAGDMFQ 248 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------------~~~v~~~~~d~~~ 248 (359)
.+++.+.....+..+|||||||+|.++..+++. +..+++++|++. +++.|++ ..+++++++|+.+
T Consensus 23 ~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 101 (313)
T 3bgv_A 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK 101 (313)
T ss_dssp HHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT
T ss_pred HHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc
Confidence 344443322346789999999999999999874 577999999965 8776652 1378999999965
Q ss_pred -C----C--C--CccEEEEcchhccC-C-chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHH------
Q 018205 249 -S----I--P--PADAFFFKAIFHAF-V-DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKL------ 311 (359)
Q Consensus 249 -~----~--p--~~D~i~~~~vl~~~-~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~------ 311 (359)
+ + + .||+|++..++|+. . .++...+|++++++|+| ||.+++..+.... ......
T Consensus 102 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~------l~~~~~~~~~~~ 172 (313)
T 3bgv_A 102 ELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTPNSFE------LIRRLEASETES 172 (313)
T ss_dssp SCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEECHHH------HHHHHTTSSSSE
T ss_pred cchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecCChHH------HHHHHHhhccCc
Confidence 2 3 2 59999999999987 3 35567899999999999 8888887654310 000000
Q ss_pred ---------hhhh------------hh-hh-hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 312 ---------LYDM------------LM-MV-AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 312 ---------~~~~------------~~-~~-~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+.+. .+ .. .......+.+++.+++++.||+++.....
T Consensus 173 ~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 173 FGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp EECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred cCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 0000 00 00 00112367899999999999999988754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=104.25 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC--CccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP--PADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p--~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|++. +++.|++ ..+++++.+|+.+ + ++ .||+|+++..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 46799999999999999999999999999999954 8877662 3689999999965 2 33 3999998865
Q ss_pred hccCCch------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFVDE------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
....... ....+++++.++|+| ||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 4322110 124699999999999 89888754
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-12 Score=112.26 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=92.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC----C---CCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD----T---DNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~----~---~~v~~~~~d~~~~~p-- 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ . +++++..+|+.+.++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 3444454 566789999999999999999998 788999999995 47776652 2 579999999976554
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++ +.++. ..+|+++.++|+| ||.+++...... ..+++
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~ 220 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKT 220 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 3999998 34444 3599999999999 898888763210 12445
Q ss_pred HHHHHHcCCceeEEEE
Q 018205 332 EKLFLDAGFSHFKITP 347 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~ 347 (359)
.+.++++||..+++..
T Consensus 221 ~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 221 VLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHSGGGTEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEE
Confidence 6677778888777765
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-12 Score=111.48 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=87.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC--CCC---CccEEEEcchhccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ--SIP---PADAFFFKAIFHAF 265 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~--~~p---~~D~i~~~~vl~~~ 265 (359)
.+..+|||||||+|.++..+++. +.+++++|++. +++.+++ ..+++++++|+.+ +++ .||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 45789999999999999999998 67999999955 8887763 5689999999965 333 49999987
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
.+ ...+|++++++|+| ||.++.. +...+.+++.+++.++||....+
T Consensus 119 ~~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 119 RG--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp SC--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred CC--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence 12 24589999999999 8877710 01124456888888999988776
Q ss_pred EEe
Q 018205 346 TPV 348 (359)
Q Consensus 346 ~~~ 348 (359)
...
T Consensus 165 ~~~ 167 (226)
T 3m33_A 165 DHV 167 (226)
T ss_dssp EEE
T ss_pred Eee
Confidence 544
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.9e-12 Score=103.62 Aligned_cols=134 Identities=11% Similarity=0.090 Sum_probs=91.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----C--CCceEeeCCCCCC-CCC-ccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----T--DNLKFIAGDMFQS-IPP-ADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~--~~v~~~~~d~~~~-~p~-~D~i~~~~vl 262 (359)
.+..+|||+|||+|.++..++...|+++++++|+++ +++.++. . .++++ .|..+. .++ ||+|++..++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 457899999999999999999999999999999965 9988772 1 24444 666443 333 9999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC-HHHHHHHHHHcCCc
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT-EKEWEKLFLDAGFS 341 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t-~~~~~~ll~~aGf~ 341 (359)
|++ ++....+.++.+.|+| ||.++-++ +..-.+..+ |..-+ ...|++.+ ...+.
T Consensus 126 HlL--~~~~~al~~v~~~L~p---ggvfISfp-tksl~Gr~~------------------gm~~~Y~~~~~~~~-~~~~~ 180 (200)
T 3fzg_A 126 PVL--KQQDVNILDFLQLFHT---QNFVISFP-IKSLSGKEK------------------GMEENYQLWFESFT-KGWIK 180 (200)
T ss_dssp HHH--HHTTCCHHHHHHTCEE---EEEEEEEE-CCCCC--CT------------------TCCCCHHHHHHHHT-TTTSC
T ss_pred Hhh--hhhHHHHHHHHHHhCC---CCEEEEeC-hHHhcCCCc------------------chhhhHHHHHHHhc-cCcce
Confidence 999 3334577799999999 55444444 322222110 11112 34455555 66777
Q ss_pred eeEEEEeCCcee
Q 018205 342 HFKITPVYGIKS 353 (359)
Q Consensus 342 ~~~~~~~~~~~~ 353 (359)
+++...+++-..
T Consensus 181 ~~~~~~~~nEl~ 192 (200)
T 3fzg_A 181 ILDSKVIGNELV 192 (200)
T ss_dssp EEEEEEETTEEE
T ss_pred eeeeeeeCceEE
Confidence 777777765443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-12 Score=111.66 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC---CCC--CccEEEE-cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ---SIP--PADAFFF-KA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~---~~p--~~D~i~~-~~ 260 (359)
.+..+|||||||+|.++..+++..+ .+++++|++. +++.|++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976543 3899999965 8877662 3678999999843 343 4999999 55
Q ss_pred h--hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 261 I--FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 261 v--l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
. .+.+.......++++++++|+| ||.+++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 3344444556789999999999 8988886643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=114.65 Aligned_cols=107 Identities=18% Similarity=0.335 Sum_probs=84.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------CCCceEeeCCCCCCCC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------TDNLKFIAGDMFQSIP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------~~~v~~~~~d~~~~~p- 251 (359)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|++. +++.|++ ..++++..+|+++.++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4566665 3445899999999999999999999999999999965 8877762 1257889999987665
Q ss_pred -CccEEEEcchhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHA---FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~---~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+++..+|+ ..+....++++++.++|+| ||.++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 4999999988885 3455556799999999999 89888864
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-12 Score=105.74 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=94.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC--C-C-CccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS--I-P-PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~--~-p-~~D~i~~ 258 (359)
..+..+|||+|||+|.++..+++.+ |..+++++|++. +++.|++ .++++++.+|+.+. . + .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3567899999999999999999986 677999999954 8887762 36899999997441 2 2 4999998
Q ss_pred cchhcc-------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 259 KAIFHA-------FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 259 ~~vl~~-------~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
...+.. ...++..++++++.++|+| ||.+++........... .. ....+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~----~~----------------~~~~~~ 156 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGDTGFE----EK----------------EKVLEF 156 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTTTBSH----HH----------------HHHHHH
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCCCcHH----HH----------------HHHHHH
Confidence 765511 1123445799999999999 89988877554332211 00 012334
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.+...+|.+......
T Consensus 157 ~~~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 157 LKGVDQKKFIVQRTDFI 173 (197)
T ss_dssp HTTSCTTTEEEEEEEET
T ss_pred HHhCCCCcEEEEEEEec
Confidence 44455677888777665
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=108.29 Aligned_cols=126 Identities=13% Similarity=0.209 Sum_probs=96.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ .+++++..+|+.+.++
T Consensus 84 ~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 84 LIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 4455555 567789999999999999999999 789999999995 48877762 3569999999976555
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++ +.++. ..+++++.++|+| ||.+++..+... ..+++
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~ 203 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMRL 203 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHHH
Confidence 3999997 34444 3589999999999 898888652210 13456
Q ss_pred HHHHHHcC--CceeEEEEe
Q 018205 332 EKLFLDAG--FSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aG--f~~~~~~~~ 348 (359)
.++++++| |..+++...
T Consensus 204 ~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 204 HEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHcCCCccccEEEEE
Confidence 67888888 887777654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=104.26 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=100.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC---CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP---PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p---~~D~i~~~~v 261 (359)
++..+|+|||||+|.++..+++..|..+++++|+++ +++.|++ .+++++..+|.++..+ .||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 456899999999999999999998888999999954 8887762 4689999999987543 4999987665
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
.- +-...+|....+.|++ +|.+++.- .. ..+.++++|.+.||.
T Consensus 100 Gg----~lI~~IL~~~~~~l~~---~~~lIlqp-~~-----------------------------~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 100 GG----RLIADILNNDIDKLQH---VKTLVLQP-NN-----------------------------REDDLRKWLAANDFE 142 (230)
T ss_dssp CH----HHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHTTEE
T ss_pred ch----HHHHHHHHHHHHHhCc---CCEEEEEC-CC-----------------------------ChHHHHHHHHHCCCE
Confidence 42 4466799999999998 77766633 10 245678999999999
Q ss_pred eeEEEEe---CCceeEEEEe
Q 018205 342 HFKITPV---YGIKSLIEVY 358 (359)
Q Consensus 342 ~~~~~~~---~~~~~vi~~~ 358 (359)
+++-.-+ +-++.+|.+.
T Consensus 143 i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 143 IVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8887644 4567777765
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=107.89 Aligned_cols=150 Identities=12% Similarity=0.119 Sum_probs=96.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-cccc-CCCCCCceEee-CCCCC----CCC--C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPK-VPDTDNLKFIA-GDMFQ----SIP--P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~-a~~~~~v~~~~-~d~~~----~~p--~ 252 (359)
..+++.+. ...+..+|||||||+|.++..+++. +..+++++|++. |++. ++...++.... .|+.. .+| .
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 34566665 1224679999999999999998886 345899999954 8887 34455654433 34311 233 3
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe-eecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID-IVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
||+|++..+++++ ..+|.+++++|+| ||.+++.- +.+...... +.......+.. ...++.+++
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lvkPqfe~~~~~--~~~~G~vrd~~------~~~~~~~~v 215 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVALVKPQFEAGREQ--IGKNGIVRESS------IHEKVLETV 215 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEECGGGTSCGGG--CC-CCCCCCHH------HHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEECcccccChhh--cCCCCccCCHH------HHHHHHHHH
Confidence 9999998888755 4599999999999 99998852 111111000 00000000000 023468899
Q ss_pred HHHHHHcCCceeEEEEeC
Q 018205 332 EKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~~ 349 (359)
.++++++||.+..+...+
T Consensus 216 ~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 216 TAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHTTEEEEEEEECS
T ss_pred HHHHHHCCCEEEEEEECC
Confidence 999999999988887653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-12 Score=115.74 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=87.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC-Ccc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP-PAD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p-~~D 254 (359)
..+++.++ .....+|||+|||+|.++..+++.+|+.+++++|++. +++.+++ ...++++.+|+++..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 45566664 2345799999999999999999999999999999965 7877662 3346788999866433 599
Q ss_pred EEEEcchhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAF---VDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~---~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|+++..+|+. ..+...+++++++++|+| ||.++++...
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~ 305 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVANA 305 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEET
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEcC
Confidence 99999999862 345567899999999999 8999887654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-12 Score=109.28 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CC-----CCccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SI-----PPADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~-----p~~D~i~~~ 259 (359)
.+..+|||||||+|..+..++..+|+.+++++|++. +++.|++ ..+++++++|+.+ .. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 457899999999999999999999999999999965 8877762 3469999999854 22 249999997
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+- +...+++.+.++|+| ||.+++....... . ...++.+.++..|
T Consensus 159 a~~------~~~~ll~~~~~~Lkp---gG~l~~~~g~~~~--------~------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEV---GGAAVAMKGPRVE--------E------------------ELAPLPPALERLG 203 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEE---EEEEEEEECSCCH--------H------------------HHTTHHHHHHHHT
T ss_pred CcC------CHHHHHHHHHHHcCC---CeEEEEEeCCCcH--------H------------------HHHHHHHHHHHcC
Confidence 542 235699999999999 8988875522110 0 1234667778889
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
|...++.++
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 999888766
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=100.84 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=95.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccC----CCCCCceEeeCCCCCC-----CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKV----PDTDNLKFIAGDMFQS-----IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a----~~~~~v~~~~~d~~~~-----~p-~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++.. |+.+++++|++. +++.+ +...+++++.+|+.+. .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4567899999999999999999885 667999999954 55443 3347899999999651 23 49999975
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.. .......++++++++|+| ||.+++. .......... . . .....+++.++ .++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~---~----~----------~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK---E----P----------EQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS---C----H----------HHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC---C----h----------hhhhHHHHHHH-Hhh-
Confidence 44 222333469999999999 8888887 2221111000 0 0 01235677777 777
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|++++....... +.++.++
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~ 225 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVR 225 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEE
T ss_pred ceeeeEeccCcccCCCEEEEEE
Confidence 999998887544 5555554
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=98.59 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=78.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC--CCeEEEeecccccccCCCCCCceEeeCCCCCC-----------
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP--GIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS----------- 249 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~----------- 249 (359)
.+.+.+. .+.+..+|||+|||+|.++..+++++| +.+++++|++++.. .++++++.+|+.+.
T Consensus 12 ~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~----~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 12 ELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP----IPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC----CTTCEEEECCTTTTSSCCC------
T ss_pred HHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC----CCCceEEEccccchhhhhhcccccc
Confidence 4455554 245668999999999999999999988 68999999977422 35789999999653
Q ss_pred ---------------CC--CccEEEEcchhccCC----chH-----HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 ---------------IP--PADAFFFKAIFHAFV----DED-----CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 ---------------~p--~~D~i~~~~vl~~~~----~~~-----~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++ .||+|++...+|... +.. ..+++++++++|+| ||.+++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 23 499999988776542 111 12489999999999 88877643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-11 Score=110.04 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=92.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---C--CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---S--IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~--~p~~D~i 256 (359)
+++.+|||||||+|.++..+++..+..+++++|++. +++.|++ .++++++.+|+.+ . ...||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 456899999999999999999877788999999954 7776652 4689999999854 1 1249999
Q ss_pred EEcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHH
Q 018205 257 FFKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKL 334 (359)
Q Consensus 257 ~~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~l 334 (359)
++....+..+.... .+++++++++|+| ||.+++..... .++ ....+++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~~--------------~~~----------~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGESI--------------WLD----------LELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECCT--------------TTC----------HHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCCc--------------ccc----------hHHHHHHHHH
Confidence 99766655443322 4799999999999 88877753210 000 1135678899
Q ss_pred HHHcCCceeEEEEe
Q 018205 335 FLDAGFSHFKITPV 348 (359)
Q Consensus 335 l~~aGf~~~~~~~~ 348 (359)
++++||..+.+...
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999998887755
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=107.97 Aligned_cols=95 Identities=17% Similarity=0.283 Sum_probs=76.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-CCCCccEEEEcchhc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-SIPPADAFFFKAIFH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~~p~~D~i~~~~vl~ 263 (359)
+.++.+|||||||+|.++..++.+.++.+++++|++ ++++.|++ .++++++++|+.+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 567899999999999877666666789999999995 59888873 3789999999955 2235999998654
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
. ++..+++++++++|+| ||++++.+
T Consensus 198 -~--~d~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -c--cCHHHHHHHHHHHcCC---CcEEEEEc
Confidence 2 3345799999999999 99999866
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=96.50 Aligned_cols=106 Identities=16% Similarity=0.242 Sum_probs=82.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCC-C--------CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ-S--------IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~-~--------~p- 251 (359)
.+++.+. ...+..+|||+|||+|.++..+++.+ |+.+++++|++.+++. .++++..+|+.+ + ++
T Consensus 12 ~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----CcEEEEEcccccchhhhhhhccCCC
Confidence 3444443 23566899999999999999999984 7789999999664433 679999999965 3 44
Q ss_pred -CccEEEEcchhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 -PADAFFFKAIFHAFVDED---------CLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.||+|++...+|...... ...+++++.++|+| ||.+++....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 499999998888765431 14789999999999 8888876643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=102.58 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=91.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~p 251 (359)
.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|++. +++.+++ ..++++..+|+.+. .+
T Consensus 24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (192)
T 1l3i_A 24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99 (192)
T ss_dssp HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence 3444454 5567899999999999999999886 7999999954 7776652 26899999998542 24
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..+++++ ..+++++.++|+| ||.+++...... +..++
T Consensus 100 ~~D~v~~~~~~~~~-----~~~l~~~~~~l~~---gG~l~~~~~~~~----------------------------~~~~~ 143 (192)
T 1l3i_A 100 DIDIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVTAILLE----------------------------TKFEA 143 (192)
T ss_dssp CEEEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEEECBHH----------------------------HHHHH
T ss_pred CCCEEEECCchHHH-----HHHHHHHHHhcCC---CcEEEEEecCcc----------------------------hHHHH
Confidence 69999998887543 5699999999999 888887653210 23567
Q ss_pred HHHHHHcCCce
Q 018205 332 EKLFLDAGFSH 342 (359)
Q Consensus 332 ~~ll~~aGf~~ 342 (359)
.+++++.||.+
T Consensus 144 ~~~l~~~g~~~ 154 (192)
T 1l3i_A 144 MECLRDLGFDV 154 (192)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHCCCce
Confidence 78889999954
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=99.90 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=90.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--Cc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PA 253 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~ 253 (359)
.+++.+. ..+..+|||+|||+|.++..+++ +..+++++|++. +++.+++ ..+++++.+|+.++++ .|
T Consensus 26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 4445554 45678999999999999999988 688999999954 8877663 2579999999865444 59
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..+ .....++++++++ | ||.+++...... +..++.+
T Consensus 102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~ 142 (183)
T 2yxd_A 102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIIN 142 (183)
T ss_dssp SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHH
T ss_pred cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHH
Confidence 99999888 2335689999998 7 899888663210 1355778
Q ss_pred HHHHcCCceeEE
Q 018205 334 LFLDAGFSHFKI 345 (359)
Q Consensus 334 ll~~aGf~~~~~ 345 (359)
.++++||.+..+
T Consensus 143 ~l~~~g~~~~~~ 154 (183)
T 2yxd_A 143 EFESRGYNVDAV 154 (183)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCeEEEE
Confidence 889999876554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-11 Score=103.53 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=92.0
Q ss_pred cC-CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---CC--CccEEE
Q 018205 192 FQ-GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---IP--PADAFF 257 (359)
Q Consensus 192 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~p--~~D~i~ 257 (359)
.. +..+|||+|||+|.++..++++.+. +++++|++ .+++.|++ .++++++.+|+.+. ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999998765 99999995 48777662 35799999999652 32 499999
Q ss_pred EcchhccC------------------CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhh
Q 018205 258 FKAIFHAF------------------VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMV 319 (359)
Q Consensus 258 ~~~vl~~~------------------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
++-.++.. .......+++.+.++|+| ||.++++. +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RP-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CT--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cH--------------------
Confidence 96443222 113346799999999999 88888842 11
Q ss_pred hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 320 AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 320 ~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
....++.+++.+.||....+.++
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEe
Confidence 02455777888899998887766
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=101.16 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=92.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccc-cc----ccCCCCCCceEeeCCCCCC-----C-CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPH-VV----PKVPDTDNLKFIAGDMFQS-----I-PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~-~~----~~a~~~~~v~~~~~d~~~~-----~-p~~D~i~~~ 259 (359)
+.+..+|||+|||+|.++..+++. .|..+++++|++. ++ +.++...++.++.+|+..+ . ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567799999999999999999887 4677999999954 53 3344456899999998542 1 249999987
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
... + ++...+++.+.+.|+| ||.+++....... |... +-.. ..++..+.|+++|
T Consensus 154 ~a~---~-~~~~il~~~~~~~Lkp---GG~lvisik~~~~--------------d~t~----~~~e-~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKV---NGDMLLVIKARSI--------------DVTK----DPKE-IYKTEVEKLENSN 207 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEE---EEEEEEEEC---------------------C----CSSS-STTHHHHHHHHTT
T ss_pred CCC---h-hHHHHHHHHHHHhCCC---CeEEEEEEccCCc--------------ccCC----CHHH-HHHHHHHHHHHCC
Confidence 543 2 2223345666779999 8998886322110 0000 0000 1133446778899
Q ss_pred CceeEEEEeCCc---eeEEEEe
Q 018205 340 FSHFKITPVYGI---KSLIEVY 358 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~ 358 (359)
|++.+...+..+ +.++.++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEE
Confidence 999999988433 5555544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=113.57 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=84.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++. +..+++++|++++++.|++ .++++++.+|+.+ +.+ .
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 45555554 446789999999999999998886 4569999999776665542 3689999999965 444 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
||+|++..+++++..+.....+.+++++|+| ||.+++..
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~ 155 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPTI 155 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESCE
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEec
Confidence 9999999998888777777889999999999 88877543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=103.55 Aligned_cols=129 Identities=9% Similarity=0.067 Sum_probs=98.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC---CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP---PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p---~~D~i~~~~v 261 (359)
++..+|+|||||+|.++..+++..|..+++++|+++ +++.|++ .+++++..+|.++.++ .||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 456899999999999999999998888999999954 8887762 4679999999987543 3999987655
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
. -+-...+|....+.|++ ++.+++.- .. ..+..+++|.+.||.
T Consensus 100 G----g~lI~~IL~~~~~~L~~---~~~lIlq~-~~-----------------------------~~~~lr~~L~~~Gf~ 142 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAG---VTKLILQP-NI-----------------------------AAWQLREWSEQNNWL 142 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHHTEE
T ss_pred c----hHHHHHHHHHHHHHhCC---CCEEEEEc-CC-----------------------------ChHHHHHHHHHCCCE
Confidence 3 24567799999999988 77766633 10 245678899999999
Q ss_pred eeEEEEe---CCceeEEEEe
Q 018205 342 HFKITPV---YGIKSLIEVY 358 (359)
Q Consensus 342 ~~~~~~~---~~~~~vi~~~ 358 (359)
+++-.-+ .-++.++.+.
T Consensus 143 i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 143 ITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEECCEEEEEEEEE
Confidence 8665533 4456676664
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=105.50 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=75.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC----CC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS----IP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~----~p--~~D~i~~~~ 260 (359)
...+|||||||+|.++..+++.+|+.+++|+|++. +++.|+ ...+++++.+|+.+. ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999999999999999954 777665 235799999997441 33 499999875
Q ss_pred hhccCCchHH------HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFHAFVDEDC------LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~~~~~~~~------~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.......... ..++++++++|+| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4332221111 2499999999999 88888865
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=104.19 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=90.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCC-C-CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSI-P-PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~-p-~~D~i~~~~vl 262 (359)
.+..+|||+|||+|.++..+++..+. +++++|++ .+++.|++ .++++++++|+.+.. + .||+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 45789999999999999999998766 89999995 48877662 346899999997633 2 49999985331
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
....+++++.++|+| ||.+++.+....... .....+++.+.++++||+.
T Consensus 203 ------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~~ 251 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDV 251 (278)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEE
T ss_pred ------hHHHHHHHHHHHCCC---CeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCee
Confidence 124589999999999 888888776532110 0124567889999999997
Q ss_pred eE
Q 018205 343 FK 344 (359)
Q Consensus 343 ~~ 344 (359)
..
T Consensus 252 ~~ 253 (278)
T 2frn_A 252 EK 253 (278)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-11 Score=101.94 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC--CccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP--PADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p--~~D~i~~~~v 261 (359)
+..+|||||||+|.++..+++.+|+.+++++|++. +++.|++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 46799999999999999999999999999999965 8877652 3579999999854 1 33 4899887543
Q ss_pred hccCCch------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 262 FHAFVDE------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 262 l~~~~~~------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..+.... ....+|+++.++|+| ||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 3211110 024699999999999 89888864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-11 Score=104.85 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=94.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC-CC-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-IP- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-~p- 251 (359)
.++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ .+++++..+|+.+. ++
T Consensus 87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4555555 567789999999999999999998 678899999995 47776652 26899999999663 55
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++ ++++. ..+++++.++|+| ||.+++..+... ...+
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 206 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE 206 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 3999997 34444 3589999999999 899988763210 1234
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+.+.++++||..+++...
T Consensus 207 ~~~~l~~~gf~~~~~~~~ 224 (258)
T 2pwy_A 207 LVRAAEAHPFRLERVLEV 224 (258)
T ss_dssp HHHHHTTTTEEEEEEEEE
T ss_pred HHHHHHHCCCceEEEEEe
Confidence 556677889987766653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=102.58 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=88.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCc--------eEee-CCCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNL--------KFIA-GDMFQSI 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v--------~~~~-~d~~~~~ 250 (359)
..+++.+. ...+..+|||||||+|.++..+++.. ..+++++|++. |++.|.. ..++ .+.. .|+. .
T Consensus 26 ~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~--~ 101 (232)
T 3opn_A 26 EKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFE--Q 101 (232)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCC--S
T ss_pred HHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcC--c
Confidence 34555555 12345799999999999999999873 24999999954 8887542 2333 2222 2221 1
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hhhhcCCcccCHH
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MMVAVRGSERTEK 329 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~t~~ 329 (359)
+.+|.+.+..++..+ ..+|++++++|+| ||.+++.. .+. +.......... ..........+.+
T Consensus 102 ~~~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~ 165 (232)
T 3opn_A 102 GRPSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIE 165 (232)
T ss_dssp CCCSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHH
T ss_pred CCCCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHH
Confidence 114555554444443 4599999999999 89888843 110 10000000000 0000001224788
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
++.++++++||++..+...
T Consensus 166 ~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 166 KVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHHHHHTEEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEEc
Confidence 9999999999999888765
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-11 Score=116.00 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=84.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++ .+..+++++|++.+++.|++ .++++++.+|+.+ +.+ .
T Consensus 148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 45566554 44568999999999999998887 56779999999767666652 3789999999976 455 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
||+|++..+++++.+++....+.+++++|+| ||.+++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 9999999888888877777888899999999 787774
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=109.90 Aligned_cols=111 Identities=15% Similarity=0.215 Sum_probs=85.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC-------C------C--CCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV-------P------D--TDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a-------~------~--~~~v~~~~~d 245 (359)
..+++.+. ..+..+|||||||+|.++..+++.++..+++|+|++. +++.| + . ..+++++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 34555555 5677899999999999999999988777899999954 76666 3 1 3689999875
Q ss_pred CCC-C------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 246 MFQ-S------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 246 ~~~-~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
.+. . ...||+|+++++++ . ++....|+++.+.|+| ||.+++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 432 1 23599999987773 2 4556789999999999 99999987665543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=8e-11 Score=105.18 Aligned_cols=126 Identities=16% Similarity=0.250 Sum_probs=93.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.++..+. +.+..+|||+|||+|.++..+++. .|..+++++|++ .+++.|++ .+++++..+|+.+.++
T Consensus 103 ~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 4555555 566789999999999999999999 678999999995 47777662 2579999999966554
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++. .++. ..+++++.++|+| ||.+++...... ...++
T Consensus 181 ~~D~V~~~-----~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~~ 222 (277)
T 1o54_A 181 DVDALFLD-----VPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQET 222 (277)
T ss_dssp SEEEEEEC-----CSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred ccCEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence 49999982 3433 3589999999999 888888663210 12345
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
.+.|+++||..+++...
T Consensus 223 ~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 223 LKKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHHSSEEEEEEECC
T ss_pred HHHHHHCCCceeEEEEE
Confidence 56677788887766543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=99.43 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=75.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccCCC-CCCceEeeCCCCCC--CC-----CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKVPD-TDNLKFIAGDMFQS--IP-----PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a~~-~~~v~~~~~d~~~~--~p-----~~D~i~~~~ 260 (359)
+..+|||||||+|..+..+++. .|+.+++++|++ .+++.|+. .++++++.+|+.+. ++ .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999997 688999999995 58888763 46899999999652 22 399999765
Q ss_pred hhccCCchHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 018205 261 IFHAFVDEDCLKILKRCRE-AIASRGDRGKVIIIDI 295 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~-~L~p~~~gG~lli~~~ 295 (359)
. |. +...+|+++.+ .|+| ||.+++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 42 34679999997 9999 898888664
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7e-11 Score=103.87 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHH--CCCCeEEEeeccc-ccccCCC---CC-------C----------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEA--FPGIKCTVLDLPH-VVPKVPD---TD-------N---------------------- 238 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~~~-~~~~a~~---~~-------~---------------------- 238 (359)
+..+|||+|||+|.++..+++. .++.+++++|++. +++.|+. .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999999998 7778999999954 8887762 12 2
Q ss_pred ---ce-------------EeeCCCCCCC------C--CccEEEEcchhccCCc-------hHHHHHHHHHHHhcccCCCC
Q 018205 239 ---LK-------------FIAGDMFQSI------P--PADAFFFKAIFHAFVD-------EDCLKILKRCREAIASRGDR 287 (359)
Q Consensus 239 ---v~-------------~~~~d~~~~~------p--~~D~i~~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~g 287 (359)
++ +..+|+++.. + .||+|+++..+++..+ +....++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 67 9999997743 3 5999999877665543 5566899999999999 8
Q ss_pred cEEEEEeee
Q 018205 288 GKVIIIDIV 296 (359)
Q Consensus 288 G~lli~~~~ 296 (359)
|.++++...
T Consensus 208 G~l~~~~~~ 216 (250)
T 1o9g_A 208 AVIAVTDRS 216 (250)
T ss_dssp CEEEEEESS
T ss_pred cEEEEeCcc
Confidence 998885433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.3e-11 Score=102.41 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------------CCCCceEeeCCCCCC----CC--Cc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------------DTDNLKFIAGDMFQS----IP--PA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------------~~~~v~~~~~d~~~~----~p--~~ 253 (359)
.+..+|||||||+|.++..+++.+|+.+++|+|++. +++.|+ ...+++++.+|+.+. ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 456789999999999999999999999999999965 776442 246799999999652 33 38
Q ss_pred cEEEEcchhccCCc--hH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 254 DAFFFKAIFHAFVD--ED----CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 254 D~i~~~~vl~~~~~--~~----~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
|.|++...-.+... .. ...+|+++.++|+| ||.+++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 99887543221110 00 13699999999999 88888765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-11 Score=97.46 Aligned_cols=114 Identities=10% Similarity=0.048 Sum_probs=84.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CC---C--CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SI---P--PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~---p--~~D~i~~~~vl 262 (359)
..+..+|||||||. +.+|++. |++.|++ ..++++..+|+.+ +. + .||+|++++++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56678999999996 2388854 8887763 2358999999854 33 3 39999999999
Q ss_pred ccC-CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 263 HAF-VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 263 ~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
|++ ++. .++|++++++|+| ||.+++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVD-------------------NNSKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSC-------------------SSSSSCCHHHHHHHHHHTTC-
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEcccccccc-------------------cccccCCHHHHHHHHHHCCC-
Confidence 998 665 5699999999999 899999655432211 01233588999999999999
Q ss_pred eeEEEE
Q 018205 342 HFKITP 347 (359)
Q Consensus 342 ~~~~~~ 347 (359)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 44 444
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=106.21 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=77.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~ 252 (359)
.+.+.+. ..+..+|||||||+|.++..+++. +..+++++|++++++.|++ .++++++.+|+.+ ++| .
T Consensus 55 ~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 55 FIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 3444433 456789999999999999999887 3458999999777776652 2789999999965 455 4
Q ss_pred ccEEEEcchhccC-CchHHHHHHHHHHHhcccCCCCcEEE
Q 018205 253 ADAFFFKAIFHAF-VDEDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 253 ~D~i~~~~vl~~~-~~~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
||+|++..+.+.+ .......+|+++.++|+| ||.++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 9999987743322 223456799999999999 88776
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7e-11 Score=109.09 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
.+..+|||||||+|.++..+++. +..+++++|++++++.|++ .++++++.+|+.+ ++| .||+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45789999999999999999987 5569999999877776652 4569999999966 455 49999997765
Q ss_pred ccC-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 263 HAF-VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 263 ~~~-~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.+ ..+....+++.+.++|+| ||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~Lkp---gG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAP---DGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCC---CCEEcc
Confidence 443 233456799999999999 787763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=98.42 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP---P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p---~ 252 (359)
.+++.+. ..+..+|||||||+|.++..+++. ..+++++|++. +++.|++ ..++++..+|+.+..+ .
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 4455555 567789999999999999999998 67999999954 8877662 3579999999966332 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
||+|++..+++++++ .+.+.|+| ||.+++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEcC
Confidence 999999999998875 47889999 8888886544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=108.67 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=79.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl 262 (359)
..+..+|||||||+|.++..+++.. ..+++++|++.+++.|++ .++++++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999873 338999999877776652 4679999999965 444 59999997766
Q ss_pred ccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 263 HAFVD-EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~-~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|.... .....+++.++++|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 65542 3456799999999999 8888765544
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=98.60 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=79.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC---
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--- 251 (359)
.+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|++. +++.+++ ..++++..+|+....+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 4445454 5567899999999999999999987 668999999954 7777663 3569999999855443
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||+|++..++++++ +++.++|+| ||.+++...
T Consensus 146 ~fD~v~~~~~~~~~~--------~~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIP--------EPLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred CeeEEEECCchHHHH--------HHHHHHcCC---CcEEEEEEC
Confidence 499999999999886 377899999 888888654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.6e-10 Score=93.50 Aligned_cols=103 Identities=13% Similarity=0.317 Sum_probs=75.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCC-----------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSI----------- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~----------- 250 (359)
..+.+.+. .+.+..+|||+|||+|.++..++++ +.+++++|++++. ...+++++++|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME----EIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC----CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc----cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 45566665 3466789999999999999999988 7799999997642 2358999999996531
Q ss_pred ---CCccEEEEcchhccCC---------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 251 ---PPADAFFFKAIFHAFV---------DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 251 ---p~~D~i~~~~vl~~~~---------~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
..||+|++........ .+....+|+.+.++|+| ||.+++..
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~ 139 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ 139 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 3699999854321111 12235689999999999 88877644
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=99.26 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++.+|+.+++++|++. +++.++. ..++++..+|+.+..+ .||+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 36799999999999999999999999999999954 7776652 2359999999966332 4999997542 2
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
....+++++.++|+| ||.+++.
T Consensus 143 ----~~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEE---EEEEEEE
T ss_pred ----CHHHHHHHHHHhcCC---CcEEEEE
Confidence 235699999999999 8888775
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-10 Score=98.11 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=70.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC--CC------CceEe--eCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD--TD------NLKFI--AGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~v~~~--~~d~~~-~~p~~D~i~~~~ 260 (359)
+.+..+|||||||+|.++..+++. .+++++|++.++..+.+ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456789999999999999999887 58999999776444332 11 68999 999965 222499999987
Q ss_pred hhccCCchH-----HHHHHHHHHHhcccCCCCc--EEEEEe
Q 018205 261 IFHAFVDED-----CLKILKRCREAIASRGDRG--KVIIID 294 (359)
Q Consensus 261 vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG--~lli~~ 294 (359)
. +...+.. ...+|+.+.++|+| || .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEe
Confidence 6 4443321 12488999999999 88 777744
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=102.11 Aligned_cols=99 Identities=10% Similarity=0.225 Sum_probs=74.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---C-------CCceEeeCCCCCC--------CC-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---T-------DNLKFIAGDMFQS--------IP- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~-------~~v~~~~~d~~~~--------~p- 251 (359)
..+..+|||+|||+|.++..+++++|+.+++++|++ .+++.|++ . ++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 445679999999999999999999999999999995 47766541 1 3689999999654 22
Q ss_pred -CccEEEEcchhcc----------------CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 -PADAFFFKAIFHA----------------FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 -~~D~i~~~~vl~~----------------~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|+++--++. ........+++.+.++|+| ||.++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 4999999732221 1222356799999999999 8888874
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=95.61 Aligned_cols=100 Identities=9% Similarity=0.049 Sum_probs=78.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC---C--CCccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS---I--PPADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~---~--p~~D~i~~~~ 260 (359)
.+..+|||+|||+|.++..+++. +..+++++|++ .+++.|++ .++++++++|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 45689999995 48887763 35899999998542 2 3599999988
Q ss_pred hhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeec
Q 018205 261 IFHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~ 297 (359)
.+++. .++..++++.+.+ +|+| ||.+++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 76643 3556789999999 9999 88888865543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=97.63 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=97.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
..+.+|||||||.|-++..++...|..+++++|+.+ +++.++. ..+.++...|.....| .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 457899999999999999999999999999999955 8887762 4567899999976433 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
+.+++....+ ++.+.|+| +|.++-++ ...-.+..+ .++- .-...|.+.+.+.|+. ++
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp-~ksl~Grs~-------gm~~----------~Y~~~~e~~~~~~g~~-~~ 267 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFP-TKSLGQRSK-------GMFQ----------NYSQSFESQARERSCR-IQ 267 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEE-CC--------------CHHH----------HHHHHHHHHHHHHTCC-EE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEecc-chhhcCCCc-------chhh----------HHHHHHHHHHHhcCCc-ee
Confidence 9877655566 99999999 45444444 321111110 1111 1246788999999994 45
Q ss_pred EEEeCCc
Q 018205 345 ITPVYGI 351 (359)
Q Consensus 345 ~~~~~~~ 351 (359)
...+++-
T Consensus 268 ~~~~~nE 274 (281)
T 3lcv_B 268 RLEIGNE 274 (281)
T ss_dssp EEEETTE
T ss_pred eeeecCe
Confidence 5555443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=8.6e-11 Score=103.24 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=77.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCC---CC---CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ---SI---PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~---~~---p~~D~i~ 257 (359)
.+..+|||||||+|..+..+++.+| +.+++++|++ .+++.|++ .++++++.+|+.+ .. ..||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 4578999999999999999999988 8899999995 48777662 3589999999844 22 1599999
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+... ......+++++.++|+| ||.+++.+....
T Consensus 142 ~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 142 IDAD-----KPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp ECSC-----GGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred ECCc-----hHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 8542 34456799999999999 887777655443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.6e-10 Score=105.24 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC-CC--CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS-IP--PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~-~p--~~D~i~~~~vl~~ 264 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ ..+++++.+|+.+. .+ .||+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 67999999955 8877762 23589999999763 33 5999999999887
Q ss_pred ---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 265 ---FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 265 ---~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
...+...+++++++++|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3346677899999999999 88888864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.8e-10 Score=92.53 Aligned_cols=104 Identities=20% Similarity=0.368 Sum_probs=75.8
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC---------CeEEEeecccccccCCCCCCceEe-eCCCCCC----
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG---------IKCTVLDLPHVVPKVPDTDNLKFI-AGDMFQS---- 249 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~d~~~~---- 249 (359)
+...+. .+.+..+|||+|||+|.++..+++.++. .+++++|++++.. ..+++++ .+|+.+.
T Consensus 13 l~~~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 13 VNERHQ-ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----LEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHC-CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----CTTCEEECSCCTTSHHHHH
T ss_pred HHHhcC-CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc----CCCCeEEEeccCCCHHHHH
Confidence 344444 2456789999999999999999999764 7999999977422 2468899 9998542
Q ss_pred -----CC--CccEEEEcchhccC----CchH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 250 -----IP--PADAFFFKAIFHAF----VDED-----CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 250 -----~p--~~D~i~~~~vl~~~----~~~~-----~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
++ .||+|++...++.. .+.. ...+++++.++|+| ||.+++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 22 49999986554432 1221 14689999999999 888887654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=105.62 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCC------cchHHHHHHHH-CCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CC--------CCccE
Q 018205 193 QGLGSLVDVGGG------TGSFARIISEA-FPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SI--------PPADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~--------p~~D~ 255 (359)
.+..+||||||| +|..+..++++ +|+.+++++|+++ +.. ..++++++++|+.+ ++ ..||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 66666666655 6999999999965 532 45789999999965 22 35999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|++.. .|++ .+..+.|++++++||| ||.+++.|..
T Consensus 292 Visdg-sH~~--~d~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDG-SHIN--AHVRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEECS-CCCH--HHHHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEECC-cccc--hhHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99864 5655 4456799999999999 8888887765
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-10 Score=99.81 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=71.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-cc-ccccCCC---------C-------CCceEeeCCCCCC---C-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PH-VVPKVPD---------T-------DNLKFIAGDMFQS---I- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~---------~-------~~v~~~~~d~~~~---~- 250 (359)
.+..+|||||||+|.++..+++.. ..+++++|+ +. +++.|+. . +++++...|..+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888763 348999999 44 7665541 0 3688886554321 1
Q ss_pred -----CCccEEEEcchhccCCchHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 018205 251 -----PPADAFFFKAIFHAFVDEDCLKILKRCREAIA---SRGDRGKVIII 293 (359)
Q Consensus 251 -----p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~---p~~~gG~lli~ 293 (359)
..||+|+++.++++.+ ....+++.+.++|+ | ++||.++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 3599999999998864 44679999999999 6 336776663
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=100.69 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~D 254 (359)
.++.+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3468999999999999999999886 7899999995 58888873 36899999998541 2 3599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++... ......+++++.++|+| ||.+++-+....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~ 174 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWD 174 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccC
Confidence 9998653 34456799999999999 777777655543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-10 Score=98.61 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC--CC------CceEe--eCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD--TD------NLKFI--AGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~v~~~--~~d~~~-~~p~~D~i~~~~ 260 (359)
+.+..+|||+|||+|.++..++++ .+++++|++.++..+.+ .. ++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999887 58999999776544432 11 68999 999954 222499999987
Q ss_pred hhccCCchH-----HHHHHHHHHHhcccCCCCc--EEEEEe
Q 018205 261 IFHAFVDED-----CLKILKRCREAIASRGDRG--KVIIID 294 (359)
Q Consensus 261 vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG--~lli~~ 294 (359)
. +...... ...+|+.+.++|+| || .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence 7 4433221 12479999999999 89 777743
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.6e-11 Score=102.88 Aligned_cols=97 Identities=13% Similarity=0.289 Sum_probs=76.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC-----CccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP-----PADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p-----~~D~i~~~ 259 (359)
.+..+|||||||+|..+..+++..|+.+++++|++ .+++.|++ .++++++.+|+.+..+ .||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 45789999999999999999998889999999995 48877762 3589999999966332 49999975
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.. ......+++++.++|+| ||.+++-+...
T Consensus 150 ~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp TT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred Cc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 43 23346799999999999 77776644433
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=97.91 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=78.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCCCCC---Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQSIP---PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~~~p---~~D 254 (359)
.+++.+. ..+..+|||||||+|.++..+++.. .+++++|++. +++.+++ ..+++++.+|+.+..+ .||
T Consensus 61 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 4455554 5567899999999999999999985 6899999954 7777652 2279999999965333 499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|++..++|++.+ ++.++|+| ||.+++....
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~~ 167 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILPIGV 167 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEEECS
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEcC
Confidence 9999999998863 57889999 8888887643
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=101.84 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC-Cc---cEEEEc--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP-PA---DAFFFK-- 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p-~~---D~i~~~-- 259 (359)
+..+|||+|||+|.++..+++. |+.+++++|++. +++.|+. .++++++.+|+++..+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 999999999954 8887762 3469999999977544 48 999996
Q ss_pred ----------chhccCCc------hHHHHHHHHHH-HhcccCCCCcEEEE
Q 018205 260 ----------AIFHAFVD------EDCLKILKRCR-EAIASRGDRGKVII 292 (359)
Q Consensus 260 ----------~vl~~~~~------~~~~~~L~~~~-~~L~p~~~gG~lli 292 (359)
.+. +.+. .+-..+++++. +.|+| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 222 2211 11126899999 99999 887776
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=101.09 Aligned_cols=94 Identities=22% Similarity=0.341 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC--------------CCCCceEeeCCCCCCCC------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP--------------DTDNLKFIAGDMFQSIP------ 251 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--------------~~~~v~~~~~d~~~~~p------ 251 (359)
++..+|||||||+|.++..+++.+|+.+++++|++. +++.++ ...+++++.+|+.+.++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 456899999999999999999999999999999965 776553 22579999999865322
Q ss_pred CccEEEEcchhccCCchHH-----------HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 PADAFFFKAIFHAFVDEDC-----------LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~-----------~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+|.|++. ++++.. ..+++++.++|+| ||.+++..
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTIT 173 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEEe
Confidence 37777643 232211 3699999999999 88888843
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=100.44 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=76.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C-----CCccE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I-----PPADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~-----p~~D~ 255 (359)
.+..+|||||||+|..+..+++.+| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999988 7899999994 47776652 45799999998542 1 34999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|++.... +....+++++.++|+| ||.+++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRP---GTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCT---TCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCC---CcEEEEeCCCc
Confidence 9986542 3446799999999999 88776655544
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=99.95 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++..|+.+++++|++. +++.|++ ..++.+..+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 456899999999999999999998888999999955 8877763 4678999999854 333 49999986552
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..++++.++|+| ||.+++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 258999999999 89999887654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-10 Score=103.37 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~vl 262 (359)
.+..+|||||||+|.++..+++. +..+++++|++.+++.|++ .++++++.+|+.+ +.| .||+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 45689999999999999998886 4458999999877766552 3679999999965 455 49999998654
Q ss_pred ccCC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 263 HAFV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 263 ~~~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+.+. ......+++.+.++|+| ||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 4432 23446799999999999 787763
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.02 E-value=3e-10 Score=102.39 Aligned_cols=98 Identities=17% Similarity=0.310 Sum_probs=75.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCC---CCC--CccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ---SIP--PADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~---~~p--~~D~i~~~~vl 262 (359)
..+|||||||+|.++..+++.+|+.+++++|++ .+++.|++ .++++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 359999999999999999999999999999995 48887762 4689999999854 233 49999986544
Q ss_pred ccCCchH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDED--CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+...... ..+++++++++|+| ||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 3322221 15699999999999 777766543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=99.99 Aligned_cols=96 Identities=14% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C---CCccEEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I---PPADAFFF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~---p~~D~i~~ 258 (359)
.+..+|||||||+|..+..+++.+|+.+++++|++ .+++.|++ .++++++.+|+.+. . ..||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 35689999999999999999999998999999995 47777662 25799999998652 1 24999999
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
....+ ....+++++.++|+| ||.+++.+..
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~ 162 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVL 162 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTT
T ss_pred CCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCC
Confidence 77654 346799999999999 8888776543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-10 Score=97.80 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=78.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~~p--- 251 (359)
..+++.+. ..+..+|||||||+|.++..+++..+ .+++++|++ .+++.|++ ..++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 34455554 55678999999999999999999987 799999995 47777652 2469999999844444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||+|++..+++++.+ ++.+.|+| ||.+++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3999999999988753 57889999 888877554
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=6e-10 Score=101.48 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=79.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSI---P 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~---p 251 (359)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|++. +++.|++ ..++++..+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 4555555 55678999999999999999999877 47899999954 8777662 346999999996533 2
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||+|++..++++++ +++.+.|+| ||.+++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 499999999999886 467889999 888888653
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-10 Score=99.17 Aligned_cols=98 Identities=12% Similarity=0.138 Sum_probs=76.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~D 254 (359)
.+..+|||||||+|..+..+++.+| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3568999999999999999999987 7899999995 47777652 35799999998442 1 4599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|++... ......+++++.++|+| ||.+++.+....
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9996543 34456799999999999 888777665543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-10 Score=94.43 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCC-------CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIP-------PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p-------~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..+++..+. ++++|++. +++.|+. ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999998655 99999954 8877762 1279999999854221 599999988
Q ss_pred hhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEeeec
Q 018205 261 IFHAFVDEDCLKILKRCR--EAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~~~~~ 297 (359)
.++ -..+ .+++.+. ++|+| ||.+++.....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPKD 150 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEETT
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCCc
Confidence 776 2222 3555555 99999 78777755443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-10 Score=98.88 Aligned_cols=98 Identities=10% Similarity=0.246 Sum_probs=76.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCC---CC------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ---SI------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~---~~------p~~D 254 (359)
.+..+|||||||+|..+..+++..+ +.+++++|++ .+++.|++ .++++++.+|+.+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999864 7899999995 48877763 3579999999732 22 2599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+|++....+++. ....+++.+ ++|+| ||.+++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccCC---CeEEEEeCCC
Confidence 999988777663 334578777 99999 8877775544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=104.74 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=76.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccc-ccccCCC-----------------CCCceEee
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPH-VVPKVPD-----------------TDNLKFIA 243 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~-~~~~a~~-----------------~~~v~~~~ 243 (359)
.++..+. ..+..+|||+|||+|.++..+++. .|+.+++++|+++ +++.|++ ..++++..
T Consensus 96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 3455555 566789999999999999999998 5778999999954 7776652 26899999
Q ss_pred CCCCCC---CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 244 GDMFQS---IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 244 ~d~~~~---~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+|+.+. ++ .||+|++.. +++. .+++++.++|+| ||.+++...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~ 220 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVV 220 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred CChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeC
Confidence 999653 33 399999843 2221 289999999999 898887664
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.5e-10 Score=102.38 Aligned_cols=95 Identities=15% Similarity=0.239 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~ 264 (359)
+.++|||||||+|.++...++.. ..+|+++|.+++++.|++ .++|+++.+|+.+ .+| .+|+|++-.+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46899999999999998877763 348999999777766652 5789999999966 566 4999998444333
Q ss_pred CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 265 FV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 265 ~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+. ......++....++|+| ||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEES
T ss_pred ccccchhhhHHHHHHhhCCC---CceECC
Confidence 22 23456788888999999 776653
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=92.43 Aligned_cols=134 Identities=10% Similarity=0.026 Sum_probs=91.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCC-CCC-CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~ 264 (359)
..+.+|||||||+|-++..+. |..+++++|++. +++.++ ...+.++...|... +.| .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999999887 789999999955 888776 25677899999966 444 4999999999999
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccC-HHHHHHHHHHcCCcee
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERT-EKEWEKLFLDAGFSHF 343 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t-~~~~~~ll~~aGf~~~ 343 (359)
+.+++....+ ++.+.|++ ++++|.=++..-.+..+ |...+ ...|++.+ ...+.++
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfPtksl~Gr~~------------------gm~~~Y~~~~e~~~-~~~~~~~ 236 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFPTRSLGGRGK------------------GMEANYAAWFEGGL-PAEFEIE 236 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEECC-----------------------------CHHHHHHHHS-CTTEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcChHHhcCCCc------------------chhhHHHHHHHHHh-hccchhh
Confidence 8766554455 88889998 45555444332221110 01112 33455554 5566777
Q ss_pred EEEEeCCcee
Q 018205 344 KITPVYGIKS 353 (359)
Q Consensus 344 ~~~~~~~~~~ 353 (359)
+...+++-..
T Consensus 237 ~~~~~~nEl~ 246 (253)
T 3frh_A 237 DKKTIGTELI 246 (253)
T ss_dssp EEEEETTEEE
T ss_pred hheecCceEE
Confidence 7777766443
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-10 Score=97.53 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=73.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------C--CCceEeeCCCCCC---C--CC-ccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------T--DNLKFIAGDMFQS---I--PP-ADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~--~~v~~~~~d~~~~---~--p~-~D~i~~ 258 (359)
+..+|||+|||+|.++..++.+.. .+++++|++. +++.|++ . ++++++.+|+.+. . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999998777643 5899999954 8887762 2 6899999998541 1 35 999999
Q ss_pred cchhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeeecC
Q 018205 259 KAIFHAFVDEDCLKILKRC--REAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~~~~~~ 298 (359)
...++ . .....+++.+ .++|+| ||.+++......
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~Lkp---gG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKP---NALIYVETEKDK 167 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEE---EEEEEEEEESSS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCC---CcEEEEEECCCC
Confidence 87754 3 3445688888 557999 888777665443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-09 Score=97.02 Aligned_cols=95 Identities=16% Similarity=0.264 Sum_probs=68.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-----ccccccCC--C--CCCceEeeC-CCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-----PHVVPKVP--D--TDNLKFIAG-DMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~--~~~v~~~~~-d~~~-~~p~~D~i~~~~ 260 (359)
+.+..+|||||||+|.++..++++ .+++++|+ +.+++.+. . .+++.++.+ |+.. +...||+|+|..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 456689999999999999999987 37999999 43443332 1 257899999 9865 333599999976
Q ss_pred hhc---cCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 018205 261 IFH---AFVDED-CLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 261 vl~---~~~~~~-~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.++ ...+.. ...+|+.+.++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 653 222221 22589999999999 886666
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-10 Score=91.93 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=77.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C-
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I- 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~- 250 (359)
.+++.+. ...+..+|||+|||+|.++..+++. +..+++++|+++ +++.|++ .++++++.+|+.+. .
T Consensus 21 ~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 21 AIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 4444443 1345689999999999999999887 567999999954 8877762 24799999998542 2
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEeeec
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCR--EAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~--~~L~p~~~gG~lli~~~~~ 297 (359)
..||+|++...++. .....+++.+. ++|+| ||.+++.....
T Consensus 99 ~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~~ 141 (177)
T 2esr_A 99 GRFDLVFLDPPYAK---ETIVATIEALAAKNLLSE---QVMVVCETDKT 141 (177)
T ss_dssp SCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred CCCCEEEECCCCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECCc
Confidence 24999999866542 23345677776 89999 78777765443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-10 Score=111.95 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=81.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CC--CCceEeeCCCCC---CC-C-CccEEEEcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DT--DNLKFIAGDMFQ---SI-P-PADAFFFKA 260 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~--~~v~~~~~d~~~---~~-p-~~D~i~~~~ 260 (359)
..+.+|||||||.|.++..+++. +.+|+|+|+++ +++.|+ +. .+++|.+++..+ .. + .||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999998 78999999965 888776 22 368999998843 22 2 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK 300 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~ 300 (359)
+|||.++++...-+.++.+.|++ ++..++......+.
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKEE 179 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTTS
T ss_pred chhcCCCHHHHHHHHHHHHHhcc---ccceeeEEeccccc
Confidence 99999887655556778888888 78888777665543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-10 Score=97.72 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=74.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC--C-CCCccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ--S-IPPADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~--~-~p~~D~i~~~~v 261 (359)
+..+|||||||+|..+..+++..| +.+++++|++. +++.|++ .++++++.+|..+ + .++||+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 468999999999999999999987 78999999954 8877662 3579999999854 2 222999998632
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
......+++++.++|+| ||.+++.+...
T Consensus 136 -----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 23346799999999999 78777655433
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-09 Score=91.59 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=75.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCC----
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSI---- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~---- 250 (359)
..+..+|||||||+|.++..+++.. |+.+++++|++. +++.|++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 567999999954 7777652 358999999996543
Q ss_pred C---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 P---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+ .||+|++...++++ ++++.+.|+| ||.+++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEcc
Confidence 2 49999999888754 4778899999 8888886543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.91 E-value=3.4e-09 Score=96.31 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=76.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC--CC-CccEEEEc-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS--IP-PADAFFFK- 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~--~p-~~D~i~~~- 259 (359)
..+..+|||+|||+|..+..+++..+ +.+++++|++. +++.+++ ..+++++.+|+.+. .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45678999999999999999999875 47999999954 7776652 34799999998542 22 49999973
Q ss_pred -----chhccCC-------chH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 -----AIFHAFV-------DED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 -----~vl~~~~-------~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.+++..+ .++ ..++|+++.++|+| ||.+++.+....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~~ 250 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLE 250 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCCC
Confidence 2333222 111 14799999999999 888888765443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.90 E-value=9e-10 Score=91.92 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC-------CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-------IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-------~p~~D~i~ 257 (359)
.+..+|||+|||+|.++..+++ .+..+++++|++ .+++.|+. .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3568999999999999998887 456799999995 48887762 25799999998552 23599999
Q ss_pred EcchhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeeec
Q 018205 258 FKAIFHAFVDEDCLKILKRC--REAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~~~~~ 297 (359)
+...++.... ..+++.+ .++|+| ||.+++.....
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~~---gG~l~~~~~~~ 157 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLTN---EAVIVCETDKT 157 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEEE---EEEEEEEEETT
T ss_pred ECCCCCchhH---HHHHHHHHHhcccCC---CCEEEEEeCCc
Confidence 9877653322 3466666 788999 78777755443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.8e-10 Score=97.78 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C----------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I---------- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~---------- 250 (359)
.+..+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .+++++..+|+.+. .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4578999999999999999999987 7899999995 47776652 24699999997431 1
Q ss_pred -------CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 251 -------PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 251 -------p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..||+|++.... +....+++++.++|+| ||.+++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 359999987543 3446799999999999 78877765443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.90 E-value=9.6e-10 Score=95.07 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=73.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC------CCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCCC--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP------GIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~p-- 251 (359)
..+..+|||||||+|.++..+++..+ ..+++++|++. +++.|++ ..++++..+|..+.++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998754 36899999954 7777662 3589999999966443
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|++...++++. +++.+.|+| ||.+++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 499999999988764 678889999 88877754
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-10 Score=97.12 Aligned_cols=93 Identities=10% Similarity=0.166 Sum_probs=72.3
Q ss_pred CeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------C-CCceEeeCCCCC---CC--CCccEEEEcc
Q 018205 196 GSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------T-DNLKFIAGDMFQ---SI--PPADAFFFKA 260 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~-~~v~~~~~d~~~---~~--p~~D~i~~~~ 260 (359)
.+|||||||+|..+..+++..| +.+++++|++. +++.|++ . ++++++.+|..+ .. ..||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4999999999999999999875 78999999954 8877762 2 589999999854 23 2499999864
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.. .....+++++.++|+| ||.+++.+..
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~ 165 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADAL 165 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTT
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCC
Confidence 32 3345699999999999 7766664433
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-09 Score=96.29 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC---C-------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS---I-------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~---~-------p~~ 253 (359)
.+..+|||||||+|..+..+++..| +.+++++|++. +++.|++ .++++++.+|..+. . ..|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3568999999999999999999987 78999999954 7777662 35799999998541 2 349
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|+|++... ......+++++.++|+| ||.+++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 99998643 23346799999999999 88777655443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-09 Score=94.77 Aligned_cols=102 Identities=14% Similarity=0.280 Sum_probs=78.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC---------CCCceEeeCCCCC-CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD---------TDNLKFIAGDMFQ-SI 250 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~---------~~~v~~~~~d~~~-~~ 250 (359)
.++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|++ .+++.|++ .+++++..+|+.+ ++
T Consensus 90 ~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 90 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 4555555 566789999999999999999986 578899999995 47776652 3589999999965 33
Q ss_pred C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+ .||+|++ +.++. ..+++++.++|+| ||.+++..+.
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 3 4999998 23333 2589999999999 8998887643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=91.52 Aligned_cols=100 Identities=15% Similarity=0.225 Sum_probs=77.9
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCC-C--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSI-P-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~-p-- 251 (359)
.++..+. ..+..+|||+|||+|.++..+++. ..+++++|+++ +++.|++ .+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 3444454 556789999999999999999998 77999999954 7776652 268999999997654 3
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.||+|++. .++. ..+++++.++|+| ||.+++....
T Consensus 158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFVD-----VREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp CBSEEEEC-----SSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred cccEEEEC-----CcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 49999972 3333 3589999999999 8999987643
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.5e-09 Score=91.34 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=73.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCCC---CCccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQSI---PPADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~~---p~~D~ 255 (359)
..+..+|||||||+|..+..+++.. |..+++++|++. +++.+++ .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 667999999954 7776652 357999999985432 24999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|++...++++ ++++.+.|+| ||.+++...
T Consensus 155 i~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHH--------HHHHHHhcCC---CcEEEEEEe
Confidence 9998888654 4578899999 888888654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=97.28 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----------CCCceEeeCCCCCC---C-CCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----------TDNLKFIAGDMFQS---I-PPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----------~~~v~~~~~d~~~~---~-p~~D~i~~ 258 (359)
.+.+|||||||+|.++..+++..+..+++++|++ .+++.|++ .++++++.+|..+. . ..||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4689999999999999999987677899999995 47776552 46899999998542 2 24999998
Q ss_pred cchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 259 KAIFHAFVDED--CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 259 ~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
....+..+... ..+++++++++|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 54433222110 14699999999999 7777664
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-09 Score=99.53 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---CCC--CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
..+.+|||||||+|..+..+++..|..+++++|++. +++.|++ .++++++.+|+.+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 456899999999999999999987888999999954 8776652 3689999999754 222 49999
Q ss_pred EEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 257 FFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 257 ~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++....+....+. ...++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854321111111 35799999999999 7777764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=94.54 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C------CCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I------PPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~------p~~D 254 (359)
.+..+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .++++++.+|+.+. . ..||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999887 7899999995 47776652 36899999998431 1 4599
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
+|++... ......+++++.++|+| ||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 9998543 23446799999999999 78777765443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=97.05 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCC---CC-CccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQS---IP-PADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~---~p-~~D~i~ 257 (359)
+.+.+|||||||+|..+..+++..|..+++++|+++ +++.|++ .++++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456899999999999999999887788999999954 7776551 46899999998542 23 499999
Q ss_pred EcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+....+..+.... .++++.++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8544332222222 5799999999999 7877764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=96.08 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=80.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC------CCCceEeeCCCCC-C--CC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQ-S--IP 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~-~--~p 251 (359)
.++.... +.+..+|||+|||+|.++..++... |+.+++++|++ .+++.|+. ..++++.++|+.+ + .+
T Consensus 194 ~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~ 271 (354)
T 3tma_A 194 ALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFP 271 (354)
T ss_dssp HHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCC
T ss_pred HHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccC
Confidence 3444444 5667899999999999999999987 88999999995 48887762 2379999999965 2 23
Q ss_pred CccEEEEcchhccCC--ch----HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 PADAFFFKAIFHAFV--DE----DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~--~~----~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+++--+.... .. ....+++++.++|+| ||.++++.
T Consensus 272 ~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 272 EVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred CCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 489999964432211 11 125799999999999 89998864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=97.19 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC----------------CCCCceEeeCCCCCC---CCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP----------------DTDNLKFIAGDMFQS---IPP 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~----------------~~~~v~~~~~d~~~~---~p~ 252 (359)
..+.+|||||||+|.++..+++. |..+++++|++ .+++.|+ ..++++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 34689999999999999999988 88899999995 4766543 246899999997432 235
Q ss_pred ccEEEEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
||+|++....+..+... ..+++++++++|+| ||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99999865432221121 25689999999999 77777653
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-09 Score=97.45 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=72.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~ 252 (359)
..+++.++ ..+..+|||||||+|.++..+++. ..+++++|++. +++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 45566665 556789999999999999999998 45899999954 7776652 2579999999976 5678
Q ss_pred ccEEEEcchhccCCchHHHHHHH--------------HH--HHhcccCCCCcEE
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILK--------------RC--REAIASRGDRGKV 290 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~--------------~~--~~~L~p~~~gG~l 290 (359)
||+|+++.. +++..+....+|. ++ +.+++| ||.+
T Consensus 94 fD~vv~nlp-y~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~ 143 (285)
T 1zq9_A 94 FDTCVANLP-YQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL 143 (285)
T ss_dssp CSEEEEECC-GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred hcEEEEecC-cccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence 999998533 3444443333442 22 358898 7755
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-09 Score=98.02 Aligned_cols=99 Identities=12% Similarity=0.090 Sum_probs=76.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----------CCCceEeeCCCCCC----CCCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----------TDNLKFIAGDMFQS----IPPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----------~~~v~~~~~d~~~~----~p~~D~i 256 (359)
+.+.+|||||||+|.++..+++..|..+++++|++. +++.|++ .++++++.+|+.+. ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 356899999999999999999987888999999954 7776551 46899999998542 2249999
Q ss_pred EEcchhcc---CCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHA---FVDED--CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~---~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++....+. -+... ..+++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99765543 11111 25799999999999 88887754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=99.26 Aligned_cols=96 Identities=13% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----C------CCCceEeeCCCCCC---C-CCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----D------TDNLKFIAGDMFQS---I-PPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~------~~~v~~~~~d~~~~---~-p~~D~i~~ 258 (359)
.+.+|||||||+|.++..+++..|..+++++|+++ +++.|+ . .++++++.+|..+. . ..||+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 46899999999999999999877888999999954 777654 1 46899999998542 2 24999998
Q ss_pred cchhccCC-chHH--HHHHHHHHHhcccCCCCcEEEEE
Q 018205 259 KAIFHAFV-DEDC--LKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 259 ~~vl~~~~-~~~~--~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
... +.+. .... .+++++++++|+| ||.+++.
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 543 2222 1111 5799999999999 7777664
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-09 Score=89.81 Aligned_cols=96 Identities=11% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC--CC--CCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ--SI--PPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~--~~--p~~D~i~~~~vl 262 (359)
+..+|||+|||+|.++..++.+.. .+++++|++. +++.|++ .++++++.+|+.+ +. ..||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 458999999999999998877742 3899999954 8887762 2589999999854 22 249999998775
Q ss_pred ccCCchHHHHHHHHHHHh--cccCCCCcEEEEEeee
Q 018205 263 HAFVDEDCLKILKRCREA--IASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~--L~p~~~gG~lli~~~~ 296 (359)
| . .....+++.+.+. |+| ||.+++....
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 4 3 2335688888764 999 7877765543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-09 Score=97.85 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----------CCCceEeeCCCCC---CC-CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----------TDNLKFIAGDMFQ---SI-PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----------~~~v~~~~~d~~~---~~-p~~D~i~ 257 (359)
..+.+|||||||+|.++..+++..|..+++++|++ .+++.|++ .++++++.+|..+ .. ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999998788899999995 48776652 4689999999854 12 2499999
Q ss_pred EcchhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 258 FKAIFHAFVDE--DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 258 ~~~vl~~~~~~--~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+....+..+.. ...+++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 85543322111 124689999999999 77776654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=89.56 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=79.8
Q ss_pred cCCCCeEEEeCCCc------chHHHHHHHHCC-CCeEEEeecccccccCCCCCCceE-eeCCCCC-CCC-CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGT------GSFARIISEAFP-GIKCTVLDLPHVVPKVPDTDNLKF-IAGDMFQ-SIP-PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~------G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~-~~~d~~~-~~p-~~D~i~~~~v 261 (359)
+.+..+|||+|||+ |. ..+++..| +.+++++|+++.+ .++++ +++|+.+ +.+ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 45678999999944 66 44566666 6899999996652 47899 9999965 333 4999998643
Q ss_pred hcc--------C-CchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHH
Q 018205 262 FHA--------F-VDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWE 332 (359)
Q Consensus 262 l~~--------~-~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~ 332 (359)
.+. . ..+....+++.++++|+| ||.+++...... ...++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence 211 1 012345799999999999 888887532211 123566
Q ss_pred HHHHHcCCceeEEE
Q 018205 333 KLFLDAGFSHFKIT 346 (359)
Q Consensus 333 ~ll~~aGf~~~~~~ 346 (359)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 77777888766655
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-09 Score=97.07 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCC----CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQS----IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~----~p~~D~i~ 257 (359)
..+.+|||||||+|..+..+++..|..+++++|++. +++.|++ .++++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 346899999999999999999887888999999954 7776551 46899999998542 22499999
Q ss_pred EcchhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 018205 258 FKAIFHAFVDEDC--LKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 258 ~~~vl~~~~~~~~--~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+...-+..+.... .+++++++++|+| ||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8553322122211 5799999999999 77776643
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-09 Score=94.73 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC---CC------CCccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ---SI------PPADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~---~~------p~~D~ 255 (359)
+..+|||||||+|..+..+++..| +.+++++|+++ +++.|++ .++++++.+|+.+ .+ ..||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 78999999954 7777652 3579999999743 11 45999
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|++... .+....+++++.++|+| ||.+++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCc
Confidence 997654 24456799999999999 77777655444
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-09 Score=93.07 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC---C-------CCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS---I-------PPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~---~-------p~~ 253 (359)
.+..+|||||||+|..+..+++..| +.+++++|++ .+++.|++ .++++++.+|..+. . ..|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3568999999999999999999987 7899999995 47776652 35799999998541 2 349
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|+|++... ......+++++.++|+| ||.+++-+.
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~p---GG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKV---GGIVAYDNT 182 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECT
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCC---CeEEEEecC
Confidence 99997532 34456799999999999 776655443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-09 Score=93.40 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=78.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC------CCCceEeeCCCCCC-CC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD------TDNLKFIAGDMFQS-IP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~------~~~v~~~~~d~~~~-~p-~~D~i~~~~vl 262 (359)
+.+..+|||+|||+|.++..+++..+..+++++|++ .+++.|++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 456789999999999999999999888899999994 58877762 35789999999653 22 49999986543
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
...++++++.+.|+| ||.+++......+
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence 234589999999999 8888877765543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.2e-09 Score=91.49 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----------CCCceEeeCCCCCCCCCccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----------TDNLKFIAGDMFQSIPPADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----------~~~v~~~~~d~~~~~p~~D~i~~~~v 261 (359)
+.+.+|||||||+|.++..+++. + .+++++|++ .+++.|++ .++++++.+|..+....||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999987 7 899999995 48888763 358999999986533459999985
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+++. .+++.++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23443 399999999999 7777764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=85.84 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCCCccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIPPADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~ 266 (359)
.+..+|||+|||+|.++..+++.. ..+++++|++. +++.++. ..+++++.+|+.+-...||+|+++-.+|...
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 356899999999999999998873 33799999954 7776652 1179999999955223599999998888776
Q ss_pred chHHHHHHHHHHHhc
Q 018205 267 DEDCLKILKRCREAI 281 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L 281 (359)
......+++++.+++
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 555567888888886
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.3e-08 Score=93.42 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=77.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCCCCCceEeeCCCCCCC--CCccEEEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSI--PPADAFFF 258 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~--p~~D~i~~ 258 (359)
.+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|++ .+++.| .+++++++|+++.. ..||+|++
T Consensus 30 ~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 4444444 2345699999999999999999886 67899999995 588877 68999999997643 35999999
Q ss_pred cchhc----------cCCchH-----------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 259 KAIFH----------AFVDED-----------------CLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 259 ~~vl~----------~~~~~~-----------------~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+--.. ++.++. ...+++++.++|+| ||.++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 52111 122221 12579999999999 898888664
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-09 Score=88.36 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-CCCceEeeCCCCCCCCCccEEEEcchhccCCchHH
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
.+..+|||+|||+|.++..+++. +..+++++|++ .+++.|+. ..+++++.+|+.+-...||+|+++..+|++.+...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35689999999999999999887 44579999995 48877763 22899999999552235999999999998876444
Q ss_pred HHHHHHHHHhc
Q 018205 271 LKILKRCREAI 281 (359)
Q Consensus 271 ~~~L~~~~~~L 281 (359)
.++++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 56888888876
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-10 Score=102.15 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=93.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~vl~ 263 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|+. .++++++.+|+.+..+ .||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 5789999999999999999987 47999999955 8887762 1589999999955222 599999999998
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCcee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHF 343 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~ 343 (359)
+..+.. ..+.+++++|+| ||.+++ +...... -+... .-....+.+++..++...|...+
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~-~~~~~~~------------~~~~~---~lp~~~~~~~~~~~l~~~g~~~i 214 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIF-RLSKKIT------------NNIVY---FLPRNADIDQVASLAGPGGQVEI 214 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHH-HHHHHHC------------SCEEE---EEETTBCHHHHHHTTCTTCCEEE
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHH-HHHHhhC------------CceEE---ECCCCCCHHHHHHHhccCCCEEE
Confidence 876553 377789999999 887444 2111000 00000 00123467788888888787666
Q ss_pred EEEEeCCc
Q 018205 344 KITPVYGI 351 (359)
Q Consensus 344 ~~~~~~~~ 351 (359)
......+.
T Consensus 215 ~~~~~~~~ 222 (241)
T 3gdh_A 215 EQNFLNNK 222 (241)
T ss_dssp EEEEETTE
T ss_pred EehhhcCc
Confidence 55555443
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-08 Score=94.43 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=79.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---CC--CccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---IP--PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~p--~~D~i~~ 258 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 456789999999999999999999876 7999999954 6765542 34799999998652 33 3999996
Q ss_pred ------cchhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 ------KAIFHAFVDE-------DC-------LKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ------~~vl~~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
..+++..++. +. .++|+++.++|+| ||.+++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3445443332 11 5789999999999 899988776654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-09 Score=96.47 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCCC---C-CCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQS---I-PPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~~---~-p~~D~i~~ 258 (359)
.+.+|||||||+|..+..+++..|..+++++|++. +++.|++ .++++++.+|+.+. . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 45899999999999999999887788999999954 7776552 46899999997442 2 24999997
Q ss_pred cchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 259 KAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 259 ~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
...-+..... ...+++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 4322201110 125699999999999 7777764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=93.60 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=87.3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
.+..+|||+|||+|.++..++...+..+++++|++. +++.|+. .+++++..+|+.+ +.+ .||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 467899999999999999999988766899999954 8887772 2589999999965 333 4999999654
Q ss_pred hccCC------chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 262 FHAFV------DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 262 l~~~~------~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
++... .+-..++++.++++| + |+.+++.. +.+.+.+.+
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i~~--------------------------------~~~~~~~~~ 339 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFITT--------------------------------EKKAIEEAI 339 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE-E---EEEEEEES--------------------------------CHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEEEC--------------------------------CHHHHHHHH
Confidence 33211 111257889999988 5 34444421 234566788
Q ss_pred HHcCCceeEEEEe
Q 018205 336 LDAGFSHFKITPV 348 (359)
Q Consensus 336 ~~aGf~~~~~~~~ 348 (359)
.+.||+..+...+
T Consensus 340 ~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 340 AENGFEIIHHRVI 352 (373)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCEEEEEEEE
Confidence 8999998887776
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=90.14 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CC-CceEeeCCCCCC-------CCCccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TD-NLKFIAGDMFQS-------IPPADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~-~v~~~~~d~~~~-------~p~~D~i~ 257 (359)
+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ .+ +++++++|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4579999999999999999986 44999999955 8887762 22 599999998652 12599999
Q ss_pred Ecch----------hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 258 FKAI----------FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 258 ~~~v----------l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
+.-- ++. .++...+++++.++|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 8321 111 13456799999999999 8887765544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=88.77 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=76.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C------CCCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S------IPPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~------~p~~D~i 256 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ ..+++++.+|+.+ . ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455789999999999999999998876 7999999954 7776552 3479999999854 1 2359999
Q ss_pred EEc------chhcc---CCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 257 FFK------AIFHA---FVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 257 ~~~------~vl~~---~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
++. .+++. +.. ....++|+++.++|+| ||.+++.......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~~~ 216 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSMEV 216 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCCCT
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCCh
Confidence 976 22221 111 1235799999999999 8888887765543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-08 Score=86.46 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=86.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-------CCCceEeeCCCCCCCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-------TDNLKFIAGDMFQSIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~p--~~D~i~~~~v 261 (359)
..++.+|||+|||+|.++..+++.. ..+++++|+ |..++.+++ .++++++.+|..+-.+ .||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3467899999999999999998874 568999999 457776652 5789999999965332 4999987532
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
. ....+|..+.++|++ ||.|.+.+....+.. .....+.++++..+.|+.
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCc
Confidence 1 123588889999999 887777655432211 112346677888899987
Q ss_pred ee
Q 018205 342 HF 343 (359)
Q Consensus 342 ~~ 343 (359)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-08 Score=90.55 Aligned_cols=97 Identities=16% Similarity=0.290 Sum_probs=67.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p~~ 253 (359)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|++. +++.+++ .++++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555555 456789999999999999999987 56899999954 7776652 3689999999966 45679
Q ss_pred cEEEEcchhccCCchHHHHHH---------------HHHHHhccc
Q 018205 254 DAFFFKAIFHAFVDEDCLKIL---------------KRCREAIAS 283 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L---------------~~~~~~L~p 283 (359)
|+|+++- -+++..+....++ ..+.+++++
T Consensus 108 D~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 9999854 4456555555555 336677877
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-08 Score=86.41 Aligned_cols=104 Identities=15% Similarity=0.247 Sum_probs=72.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCC---C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIP---P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p---~ 252 (359)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|++ .+++.+++ .++++++.+|+.+ +++ .
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 45666665 5567899999999999999999984 789999995 48888874 3579999999966 343 2
Q ss_pred ccEEEEcchhccCCchHHHH----------HH----HHHHHhcccCCCCcEEEEEe
Q 018205 253 ADAFFFKAIFHAFVDEDCLK----------IL----KRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~----------~L----~~~~~~L~p~~~gG~lli~~ 294 (359)
| .|++ +.-++...+.... ++ +.+.++|+| ||.+.+..
T Consensus 95 f-~vv~-n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KIVG-NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp E-EEEE-ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred c-EEEE-eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 6 4444 3222222222222 33 668899998 78766543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.3e-08 Score=92.03 Aligned_cols=99 Identities=10% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC-----CeEEEeecc-cccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG-----IKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..+++..+. .+++|+|++ .+++.|+. ..++.+..+|.+.+.+ .||+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999988754 689999995 47777662 2368999999977543 599999987
Q ss_pred hhccCCchHH----------------HHHHHHHHHhcccCCCCcEEEEEee
Q 018205 261 IFHAFVDEDC----------------LKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 261 vl~~~~~~~~----------------~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.+++++.++. ..+++++.+.|+| ||.++++.+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 7766654332 2589999999999 888888663
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=80.79 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=94.6
Q ss_pred CCCeEEEeCCCcchHHHHH--------HHHC-------CCCeEEEeeccc-c-------cccCCC-----------C-C-
Q 018205 194 GLGSLVDVGGGTGSFARII--------SEAF-------PGIKCTVLDLPH-V-------VPKVPD-----------T-D- 237 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~-----------~-~- 237 (359)
+..+|+|+|||+|..+..+ .+++ |..++..-|+|. . +....+ . .
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3689999999999877766 3333 778999999965 3 222211 0 1
Q ss_pred -CceEeeCCCCC-CCC--CccEEEEcchhccCCch------------------------------------HHHHHHHHH
Q 018205 238 -NLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDE------------------------------------DCLKILKRC 277 (359)
Q Consensus 238 -~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~------------------------------------~~~~~L~~~ 277 (359)
-+.-+.+.|.. .+| .+|+|+++.+||.+++. +...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334556655 456 49999999999987621 345679999
Q ss_pred HHhcccCCCCcEEEEEeeecCCCCcch--HHHHHH------Hhhhhhhh-----h-----hcCCcccCHHHHHHHHH-Hc
Q 018205 278 REAIASRGDRGKVIIIDIVINEKKEDA--QLTEAK------LLYDMLMM-----V-----AVRGSERTEKEWEKLFL-DA 338 (359)
Q Consensus 278 ~~~L~p~~~gG~lli~~~~~~~~~~~~--~~~~~~------~~~~~~~~-----~-----~~~g~~~t~~~~~~ll~-~a 338 (359)
++.|+| ||++++.-....+..... ...... .+.++... . ......++.+|++++++ +.
T Consensus 212 a~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~ 288 (374)
T 3b5i_A 212 AAEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG 288 (374)
T ss_dssp HHHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred HHHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence 999999 888888776655432100 000000 01111000 0 00123579999999998 58
Q ss_pred CCceeEEEEe
Q 018205 339 GFSHFKITPV 348 (359)
Q Consensus 339 Gf~~~~~~~~ 348 (359)
||++.++...
T Consensus 289 ~F~I~~le~~ 298 (374)
T 3b5i_A 289 SFAIDKLVVY 298 (374)
T ss_dssp SEEEEEEEEE
T ss_pred CcEEEEEEEE
Confidence 9998777654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=89.31 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=78.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---CC--CccEEEE--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---IP--PADAFFF-- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~p--~~D~i~~-- 258 (359)
..+..+|||+|||+|..+..+++..++.+++++|++. +++.+++ ..+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 4567899999999999999999999888999999954 7766552 23588999998652 22 4999996
Q ss_pred ----cchhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 ----KAIFHAFVDE-------DC-------LKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ----~~vl~~~~~~-------~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
..++++.++. +. .++|+++.+.|+| ||.+++.+....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~~ 378 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVL 378 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2344443331 11 4789999999999 898888776554
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-08 Score=92.70 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CC-CceEeeCCCCCCC-------CCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TD-NLKFIAGDMFQSI-------PPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~-~v~~~~~d~~~~~-------p~~D~i 256 (359)
.+..+|||+|||+|.++..+++.. ..+++++|++. +++.|++ .+ +++++++|+++.. ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 356899999999999999999863 23899999954 8887762 22 8999999985421 259999
Q ss_pred EEcchh-----ccCC--chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIF-----HAFV--DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl-----~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
++.--. .... .....++++.+.++|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984222 1121 13345688899999999 77766654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=83.17 Aligned_cols=80 Identities=19% Similarity=0.383 Sum_probs=57.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCC-Ccc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIP-PAD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p-~~D 254 (359)
..+++.+. ..+..+|||||||+|.++..++++. .+++++|++. +++.++ ..++++++.+|+.+ +++ ..+
T Consensus 20 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 20 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 34555555 4567899999999999999999985 6899999954 777655 23689999999965 444 233
Q ss_pred EEEEcchhccC
Q 018205 255 AFFFKAIFHAF 265 (359)
Q Consensus 255 ~i~~~~vl~~~ 265 (359)
..++++.-+++
T Consensus 96 ~~vv~nlPy~~ 106 (244)
T 1qam_A 96 YKIFGNIPYNI 106 (244)
T ss_dssp CEEEEECCGGG
T ss_pred eEEEEeCCccc
Confidence 34444444444
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=90.32 Aligned_cols=103 Identities=8% Similarity=0.075 Sum_probs=75.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEE-
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFF- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~- 258 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ .. +.++.+|..+ . .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999998765 6899999954 7776652 33 8999999744 1 23 4999995
Q ss_pred ---c--chhc-------cCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 ---K--AIFH-------AFVDEDC-------LKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ---~--~vl~-------~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+ .+++ .+..++. .++|+++.++|+| ||.+++.+....
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~~ 233 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTFA 233 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccCc
Confidence 1 2222 2322222 6799999999999 888887765543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=82.04 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC----
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP---- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p---- 251 (359)
.+++.+. ..+..+|||+|||+|.++..+++. ..+++++|++. +++.|+. ..+++++.+|+.+.++
T Consensus 277 ~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 455689999999999999999987 67899999954 8887762 3479999999966321
Q ss_pred ---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 252 ---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 252 ---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.||+|++.- +......+++.+.+ ++| ++.+++
T Consensus 353 ~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p---~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEP---IRIVYV 387 (433)
T ss_dssp GTTCCSEEEECC-----CTTCCHHHHHHHHH-HCC---SEEEEE
T ss_pred hcCCCCEEEECC-----CCccHHHHHHHHHh-cCC---CeEEEE
Confidence 499999742 21112235555554 677 454444
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-07 Score=88.83 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=71.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------C-C-CceEeeCCCCCCC-------CCccEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------T-D-NLKFIAGDMFQSI-------PPADAFF 257 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~-~-~v~~~~~d~~~~~-------p~~D~i~ 257 (359)
+..+|||+|||+|.++..+++.. ..+++++|++. +++.|++ . . +++++.+|+++.. ..||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 56899999999999999999874 45899999954 8777662 2 3 7899999985521 2599999
Q ss_pred EcchhccC-------CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 258 FKAIFHAF-------VDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 258 ~~~vl~~~-------~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.--.... .......++.++.+.|+| ||.+++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 85321100 013456799999999999 77777655
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-07 Score=85.83 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEc--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFK-- 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~-- 259 (359)
+..+|||+|||+|..+..+++..+ ..+++++|++. +++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 47999999954 7776652 3579999999855 1 33 49999972
Q ss_pred ----chhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 ----AIFH-------AFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 ----~vl~-------~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
.++. +|..++ ..++|+++.++|+| ||.+++.+.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~~ 251 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLNQ 251 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCSS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCCc
Confidence 2232 233222 24689999999999 8888887765543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=82.24 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=60.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCCC--c
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIPP--A 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p~--~ 253 (359)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|++ .+++.+++ .++++++.+|+.+ +++. |
T Consensus 40 ~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 45556555 556789999999999999999998 5689999995 48877763 4789999999976 5554 9
Q ss_pred cEEEEcch
Q 018205 254 DAFFFKAI 261 (359)
Q Consensus 254 D~i~~~~v 261 (359)
|+|+++.-
T Consensus 116 D~Iv~NlP 123 (295)
T 3gru_A 116 NKVVANLP 123 (295)
T ss_dssp SEEEEECC
T ss_pred cEEEEeCc
Confidence 99997643
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-07 Score=85.63 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCCCccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIPPADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++.. ++ ...+++++|++ .+++.|++ .++++++.+|+++....||+|++.---
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 4578999999999999999 76 47799999995 48777662 257999999996644569999985211
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
. ...+++.+.++|+| ||.+++.+....
T Consensus 269 ~----~~~~l~~~~~~L~~---gG~l~~~~~~~~ 295 (336)
T 2yx1_A 269 F----AHKFIDKALDIVEE---GGVIHYYTIGKD 295 (336)
T ss_dssp T----GGGGHHHHHHHEEE---EEEEEEEEEESS
T ss_pred h----HHHHHHHHHHHcCC---CCEEEEEEeecC
Confidence 1 12589999999999 888888776544
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-07 Score=87.40 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=74.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCC------CCCceEeeCCCCC-C--CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-S--IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~--~p-~~D~i~~~ 259 (359)
..+..+|||+|||+|..+..+++..++ .+++++|++. +++.+++ ..++.++.+|..+ . .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999988654 6899999954 7766552 3568999999843 1 23 49999973
Q ss_pred c------hhcc-------CCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 A------IFHA-------FVDED-------CLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~------vl~~-------~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
- ++.. +..++ ..++|+++.++|+| ||.|++.+....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 238 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTFA 238 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeecc
Confidence 1 2221 21111 12789999999999 888887766554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-07 Score=88.06 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC-------CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS-------IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~-------~p~~D~i~~ 258 (359)
+..+|||+|||+|.++..+++. +..+++++|++. +++.|++ .++++++.+|+++. ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5789999999999999999986 344899999954 8877662 12799999998542 125999998
Q ss_pred cchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 259 KAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 259 ~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.--....+. .....++.++.++|+| ||.+++.+..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence 432211111 3456789999999999 8888776644
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=87.94 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC-------CCCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS-------IPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~-------~p~~D~i~~~ 259 (359)
+..+|||+|||+|.++..+++. ..+++++|++. +++.|+. ..+++++.+|+++. -..||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 56899999954 8877762 23489999998542 1259999984
Q ss_pred chhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 260 AIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 260 ~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
--....+. .....+++++.++|+| ||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 22111111 3446799999999999 8887776643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-06 Score=76.56 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=91.4
Q ss_pred CCeEEEeCCCcchHHHHHHHH-----------------CCCCeEEEeeccc--c----------cccCC----CCCCceE
Q 018205 195 LGSLVDVGGGTGSFARIISEA-----------------FPGIKCTVLDLPH--V----------VPKVP----DTDNLKF 241 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~--~----------~~~a~----~~~~v~~ 241 (359)
..+|+|+||++|..+..+... .|.++++.-|+|. . .+..+ ...+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999888777665 4678899999972 1 11000 0112233
Q ss_pred ---eeCCCCC-CCC--CccEEEEcchhccCCchH-------------------------H------------HHHHHHHH
Q 018205 242 ---IAGDMFQ-SIP--PADAFFFKAIFHAFVDED-------------------------C------------LKILKRCR 278 (359)
Q Consensus 242 ---~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~-------------------------~------------~~~L~~~~ 278 (359)
+.+.|+. -+| .+|+|+++.+||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655 456 499999999999875321 1 12377789
Q ss_pred HhcccCCCCcEEEEEeeecCCC--CcchHHHHHHHhhhhhhhh--------hc--CCcccCHHHHHHHHHHcC-CceeEE
Q 018205 279 EAIASRGDRGKVIIIDIVINEK--KEDAQLTEAKLLYDMLMMV--------AV--RGSERTEKEWEKLFLDAG-FSHFKI 345 (359)
Q Consensus 279 ~~L~p~~~gG~lli~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~--~g~~~t~~~~~~ll~~aG-f~~~~~ 345 (359)
+.|+| ||++++.-....+. .....-.....+.++.... .. ....++.+|++++++++| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 88888777666553 2110000111122211100 01 134579999999999985 777666
Q ss_pred EE
Q 018205 346 TP 347 (359)
Q Consensus 346 ~~ 347 (359)
..
T Consensus 290 e~ 291 (384)
T 2efj_A 290 ET 291 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-07 Score=83.26 Aligned_cols=110 Identities=8% Similarity=0.027 Sum_probs=77.2
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--------------------------------------CeEEEe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--------------------------------------IKCTVL 224 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~ 224 (359)
.++.... +.+..+|||.+||+|.+++..+....+ .+++++
T Consensus 192 ~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 269 (393)
T 3k0b_A 192 ALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG 269 (393)
T ss_dssp HHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 4444445 566789999999999999888875433 569999
Q ss_pred eccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 225 DLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFHA-FV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 225 D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~-~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|++. +++.|+. .+++++.++|+++ +.+ .||+|+++--... .. .++...+.+.+.+.|++ -+|+.+++
T Consensus 270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~i 348 (393)
T 3k0b_A 270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVYV 348 (393)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEEE
Confidence 9954 8887762 3579999999966 233 4999998733211 11 24455677777777765 23788888
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 349 it~ 351 (393)
T 3k0b_A 349 LTS 351 (393)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.9e-07 Score=88.54 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=84.0
Q ss_pred ChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccc--cCCCCeEEEeCCCcchHHHHHHHHC----CCCeEEEeeccc
Q 018205 155 VFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPI--FQGLGSLVDVGGGTGSFARIISEAF----PGIKCTVLDLPH 228 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~~~ 228 (359)
..|+.+++|+-....|.+|+.. ++.+..... ..+...|+|||||+|-++...+++. -+++++++|-+.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYK------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhhcCChhhHHHHHHHHHH------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3477778888777777776652 333333211 1234679999999998854444332 224789999866
Q ss_pred ccccCCC-------CCCceEeeCCCCC-CCCC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEE
Q 018205 229 VVPKVPD-------TDNLKFIAGDMFQ-SIPP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKV 290 (359)
Q Consensus 229 ~~~~a~~-------~~~v~~~~~d~~~-~~p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~l 290 (359)
+...+.+ .++|+++.+|+.+ ..|+ +|+|++=.+=...-.+-...+|....+.|+| ||.+
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 5544441 6789999999976 6774 9999974443333334455678888899999 6654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.6e-07 Score=83.96 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCC---CC-CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQS---IP-PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~---~p-~~D~i~~~~vl 262 (359)
.+..+|||+|||+|.++..+++. +.+++++|++. +++.|++ .-..++..+|+++. .+ .||+|++.--.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34789999999999999999987 45699999965 8887762 11235678888542 22 39999985322
Q ss_pred ccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 263 HAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 263 ~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
..-+. .....+++.+.++|+| ||.+++.+...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s~ 329 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCSY 329 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 11111 2335789999999999 88888766544
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=79.79 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=79.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--------------------------------------CeEEEe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--------------------------------------IKCTVL 224 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~ 224 (359)
.++.... +.+...|+|.+||+|.+++..+....+ .+++++
T Consensus 185 all~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv 262 (384)
T 3ldg_A 185 AIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF 262 (384)
T ss_dssp HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred HHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence 4444444 566789999999999999888865433 569999
Q ss_pred eccc-ccccCCC-------CCCceEeeCCCCC-CCC-CccEEEEcchhc-cC-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 225 DLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP-PADAFFFKAIFH-AF-VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 225 D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~-~~-~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|++. +++.|+. .+++++.++|+.+ +.+ .||+|+++--.. .+ ..++...+.+.+.+.|++ -+|+.++|
T Consensus 263 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~i 341 (384)
T 3ldg_A 263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQFI 341 (384)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEEE
Confidence 9954 8887762 4579999999965 233 499999873322 12 235667788888888875 23788888
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 342 it~ 344 (384)
T 3ldg_A 342 LTN 344 (384)
T ss_dssp EES
T ss_pred EEC
Confidence 764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.1e-07 Score=78.02 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=61.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--CCCceEeeCCCCC-CCCC-c-cE
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ-SIPP-A-DA 255 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~-~~p~-~-D~ 255 (359)
..+++.++ ..+..+|||||||+|.++..+++. +..+++++|++. +++.+++ ..+++++.+|+++ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 35566665 556789999999999999999987 457899999954 7776654 3578999999965 4443 1 45
Q ss_pred EEEcchhccCCch
Q 018205 256 FFFKAIFHAFVDE 268 (359)
Q Consensus 256 i~~~~vl~~~~~~ 268 (359)
+++.+.-++...+
T Consensus 98 ~vv~NlPy~i~~~ 110 (249)
T 3ftd_A 98 KVVGNLPYNVASL 110 (249)
T ss_dssp EEEEECCTTTHHH
T ss_pred EEEEECchhccHH
Confidence 6666666555443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.30 E-value=8.3e-06 Score=74.62 Aligned_cols=151 Identities=16% Similarity=0.166 Sum_probs=92.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHH----------------CCCCeEEEeeccc-ccccC-CC------CCCceE---eeCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEA----------------FPGIKCTVLDLPH-VVPKV-PD------TDNLKF---IAGD 245 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-~~~~a-~~------~~~v~~---~~~d 245 (359)
++..+|+|+||++|..+..+... .|..+++.-|+|. ..... +. ..+-.| +.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45678999999999654433322 4677899999964 33211 11 012233 4456
Q ss_pred CCC-CCC--CccEEEEcchhccCCc-------------------------------hHHHHHHHHHHHhcccCCCCcEEE
Q 018205 246 MFQ-SIP--PADAFFFKAIFHAFVD-------------------------------EDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 246 ~~~-~~p--~~D~i~~~~vl~~~~~-------------------------------~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
|+. -+| .+|+|+++..||.+++ .+...+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 665 466 4999999999998753 1234569999999999 89888
Q ss_pred EEeeecCCCCcc-----hHHH-HHHHhhhhhhhh----------hcCCcccCHHHHHHHHHHcCC-ceeEEE
Q 018205 292 IIDIVINEKKED-----AQLT-EAKLLYDMLMMV----------AVRGSERTEKEWEKLFLDAGF-SHFKIT 346 (359)
Q Consensus 292 i~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~----------~~~g~~~t~~~~~~ll~~aGf-~~~~~~ 346 (359)
+.-....+.... ..+. ....+.++.... ......++.+|++++++++|. ++.+..
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 877766554210 0000 111122221110 012246789999999999965 665543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-07 Score=85.96 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-------------CCCeEEEeecc-cccccCCC------C--CCceEeeCCCCCC-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-------------PGIKCTVLDLP-HVVPKVPD------T--DNLKFIAGDMFQS- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~~-~~~~~a~~------~--~~v~~~~~d~~~~- 249 (359)
....+|+|.|||+|.++..+++.. +..+++|+|+. .+++.|+. . .++.+.++|.+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 446799999999999999888753 35689999994 47776651 1 2688999999763
Q ss_pred C-CCccEEEEcchhccCCch---------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 250 I-PPADAFFFKAIFHAFVDE---------------DCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 250 ~-p~~D~i~~~~vl~~~~~~---------------~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
. ..||+|+++--++..... ....+++++.+.|+| ||++.++.+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 2 259999997555442211 113689999999999 899888764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=73.18 Aligned_cols=111 Identities=10% Similarity=0.104 Sum_probs=69.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCC-CCCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMF-QSIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~-~~~p--~~ 253 (359)
..+.++. .+.+..+|||+|||+|.++..++++.+-.+++++|+.. ....... ..++.....++. ..++ .+
T Consensus 64 ~ei~ek~--~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 64 RWFHERG--YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHTT--SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhC--CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 3455553 25677899999999999999988876555677777743 2111111 114444555541 1333 49
Q ss_pred cEEEEcchhc---cCCch-HHHHHHHHHHHhcccCCCC-cEEEEEeeecC
Q 018205 254 DAFFFKAIFH---AFVDE-DCLKILKRCREAIASRGDR-GKVIIIDIVIN 298 (359)
Q Consensus 254 D~i~~~~vl~---~~~~~-~~~~~L~~~~~~L~p~~~g-G~lli~~~~~~ 298 (359)
|+|++....+ ++.|. ....+|+.+.++|+| | |.+++ ....+
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~p 187 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLAP 187 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESCT
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecCC
Confidence 9999977555 11122 223467999999999 8 87776 55543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-06 Score=76.96 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC---CCCceEeeCCCCC-CCC---Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD---TDNLKFIAGDMFQ-SIP---PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~---~~~v~~~~~d~~~-~~p---~~ 253 (359)
+.+++.+. ..+. +|||||||+|.++..+++.. .+++++|++ .+++.+++ ..+++++.+|+++ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 35566665 4556 99999999999999999984 689999995 48876652 4689999999965 444 46
Q ss_pred cEEEEcchhccCCchHHHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKR 276 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~ 276 (359)
|.|+. |.-++.+.+-..++|..
T Consensus 112 ~~iv~-NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVA-NLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEE-EECSSCCHHHHHHHHHH
T ss_pred cEEEe-cCcccccHHHHHHHhcC
Confidence 66555 45556665544444443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-06 Score=79.98 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=65.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC-CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP-PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~ 264 (359)
.+..+|||+|||+|.++..+++. ..+++++|++. +++.|+. .. ++++.+|+.+..+ .||+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 45689999999999999999986 56899999954 8887762 23 8999999966444 5999998433211
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.. ..+++.+. .|+| +|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred hH----HHHHHHHH-hcCC---CcEEEEE
Confidence 11 23555554 4888 6766663
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.23 E-value=8e-06 Score=63.94 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCCCeEEEeCCCcc-hHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCCCCC----CccEEEEcchhccCC
Q 018205 193 QGLGSLVDVGGGTG-SFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSIP----PADAFFFKAIFHAFV 266 (359)
Q Consensus 193 ~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~p----~~D~i~~~~vl~~~~ 266 (359)
....+|||||||.| ..+..|+++. +..++++|+. ..++ ++..|+|++.. .||+|...+ +
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 34679999999999 5888888743 7889999994 4544 89999988654 699997755 3
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
..+....+.++.+.. |.-++|....
T Consensus 99 P~El~~~i~~lA~~v-----~adliI~pL~ 123 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV-----GARLIIKPLT 123 (153)
T ss_dssp CTTTHHHHHHHHHHH-----TCEEEEECBT
T ss_pred CHHHHHHHHHHHHHc-----CCCEEEEcCC
Confidence 344444555555554 3456664433
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=81.26 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=77.6
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--------------------------------------CeEEEe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--------------------------------------IKCTVL 224 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~~ 224 (359)
.++.... +.+..+|||.+||+|.+++.++....+ .+++|+
T Consensus 186 ~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv 263 (385)
T 3ldu_A 186 GLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY 263 (385)
T ss_dssp HHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred HHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3444444 556789999999999999998776322 579999
Q ss_pred ecc-cccccCCC-------CCCceEeeCCCCCC-CC-CccEEEEcchhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 225 DLP-HVVPKVPD-------TDNLKFIAGDMFQS-IP-PADAFFFKAIFHA-FV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 225 D~~-~~~~~a~~-------~~~v~~~~~d~~~~-~p-~~D~i~~~~vl~~-~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
|++ .+++.|+. .+++++.++|+.+. .+ .||+|+++--... +. .++...+.+++.+.|++ -+|+.+++
T Consensus 264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~i 342 (385)
T 3ldu_A 264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYYL 342 (385)
T ss_dssp ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEEE
T ss_pred ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEEE
Confidence 995 48888772 34799999999662 33 4999998644321 22 34556777877777775 22788888
Q ss_pred Eee
Q 018205 293 IDI 295 (359)
Q Consensus 293 ~~~ 295 (359)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.6e-06 Score=86.83 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCCC---C-CCccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQS---I-PPADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~---~-p~~D~i~~~~ 260 (359)
+..+|||+|||+|.++..++... ..+++++|++. +++.|++ .++++++++|+++. . ..||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 56899999999999999988853 33699999965 8887762 24799999998652 2 2599999843
Q ss_pred hhc--------cCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 261 IFH--------AFV-DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 261 vl~--------~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
-.. .+. ......+++.+.++|+| ||.+++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 110 111 13456799999999999 77777544
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=78.88 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=60.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-C--C--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-S--I-- 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~--~-- 250 (359)
+.+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|++. +++.|++ .++++++++|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 56666665 5567899999999999999999999888999999954 8877652 2689999999843 1 1
Q ss_pred ---CCccEEEEcc
Q 018205 251 ---PPADAFFFKA 260 (359)
Q Consensus 251 ---p~~D~i~~~~ 260 (359)
..||.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 3599998743
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-06 Score=75.38 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----------CCCCceEeeCCCCCCC----CCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----------DTDNLKFIAGDMFQSI----PPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----------~~~~v~~~~~d~~~~~----p~~D~i 256 (359)
+.+++||-||+|.|..+..+++..+..+++.+|+ +.+++.++ ..+|++++.+|...-+ ..||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998777779999999 55887665 2689999999996632 249999
Q ss_pred EEcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 257 FFKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 257 ~~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.-.. ...... -...+++.++++|+| ||.+++..
T Consensus 162 i~D~~-dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCT-DPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EESCC-CCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEeCC-CcCCCchhhcCHHHHHHHHHHhCC---CCEEEEec
Confidence 96422 111100 013589999999999 67666543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.9e-07 Score=80.99 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=51.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC--CeEEEeeccc-ccccCCC--CCCceEeeCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG--IKCTVLDLPH-VVPKVPD--TDNLKFIAGDMFQ 248 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~-~~~~a~~--~~~v~~~~~d~~~ 248 (359)
..+++.+. ..+..+|||||||+|.++..|++..+. .+++++|++. +++.+++ ..+++++.+|+++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALT 101 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhc
Confidence 34555555 556789999999999999999998543 4599999954 8887764 3689999999965
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-06 Score=75.47 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=51.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ 248 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~ 248 (359)
..+++.+. ..+..+|||||||+|.++..++++. .+++++|++. +++.+++ .++++++.+|+++
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence 35566665 5567899999999999999999874 6899999954 8877652 4789999999976
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-06 Score=84.99 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=81.5
Q ss_pred ChhhhcccCccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-------------CCCeE
Q 018205 155 VFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-------------PGIKC 221 (359)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~ 221 (359)
..|+.+.+|+-....|.+|+... +.+.+.. ..+...|+|||||+|-++...+++. ...++
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a------l~d~~~~-~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV 449 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA------LKDLGAD-GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL 449 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH------HHHHHTT-CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH------HHHhhcc-cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence 44677777877777777666532 2222210 1235689999999999965332221 23489
Q ss_pred EEeeccc-ccccCC------CCCCceEeeCCCCC-CC------C-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCC
Q 018205 222 TVLDLPH-VVPKVP------DTDNLKFIAGDMFQ-SI------P-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGD 286 (359)
Q Consensus 222 ~~~D~~~-~~~~a~------~~~~v~~~~~d~~~-~~------p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~ 286 (359)
+++|-+. .+...+ -.++|+++.+|+.+ .. | .+|+|++=..=.....+-...+|..+.+.|+|
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp--- 526 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP--- 526 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---
Confidence 9999854 332211 15789999999966 44 4 59999986654333344456688888899999
Q ss_pred CcEEE
Q 018205 287 RGKVI 291 (359)
Q Consensus 287 gG~ll 291 (359)
||.++
T Consensus 527 ~Gi~i 531 (745)
T 3ua3_A 527 TTISI 531 (745)
T ss_dssp TCEEE
T ss_pred CcEEE
Confidence 66543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.1e-06 Score=71.18 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=69.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEee-C-CCCC-CCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIA-G-DMFQ-SIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~-~-d~~~-~~p~~ 253 (359)
..+.+++. +.+..+|||+|||.|.++..+++..+-.+++++|+.. +...+.. ..++.... . |+.. ....+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 56666664 6677899999999999999988877666788999843 3222221 12333222 2 4322 11249
Q ss_pred cEEEEcchhccCCc----h-HHHHHHHHHHHhcccCCCC--cEEEEEeeec
Q 018205 254 DAFFFKAIFHAFVD----E-DCLKILKRCREAIASRGDR--GKVIIIDIVI 297 (359)
Q Consensus 254 D~i~~~~vl~~~~~----~-~~~~~L~~~~~~L~p~~~g--G~lli~~~~~ 297 (359)
|+|+|-...+ -.. + ....+|+-+.++|+| | |.+++ ....
T Consensus 158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~-KvF~ 203 (282)
T 3gcz_A 158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI-KVLC 203 (282)
T ss_dssp SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE-EESC
T ss_pred CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE-EEec
Confidence 9999976665 322 1 223468888999999 6 76665 4443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.99 E-value=4.4e-05 Score=69.46 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC----C-----------------------CCCceEeeCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP----D-----------------------TDNLKFIAGDM 246 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~-----------------------~~~v~~~~~d~ 246 (359)
+...||.+|||.......+...++++.++-+|.|++++.-+ + .++..++..|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 46899999999999999999888888999999988664321 0 36899999999
Q ss_pred CCC---------C--C-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhh
Q 018205 247 FQS---------I--P-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYD 314 (359)
Q Consensus 247 ~~~---------~--p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
.+. . + ...++++-.+|++++.++..++|+.+.+.+ | +|.+++.|...+....+. +... ....
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~~-fg~~-m~~~ 250 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPNDR-FGAI-MQSN 250 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTCC-HHHH-HHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcch-HHHH-HHHH
Confidence 651 1 1 256888899999999999999999999988 4 688888998876332221 2211 1111
Q ss_pred hhh-h-h--hcCCcccCHHHHHHHHHHcCCc
Q 018205 315 MLM-M-V--AVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 315 ~~~-~-~--~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
+.. . . .......+.++..+.|.++||.
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 111 0 0 1112346889999999999997
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-06 Score=72.48 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=80.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-------CCC-----CeEEEeec-c---cccc-----------cCC------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-------FPG-----IKCTVLDL-P---HVVP-----------KVP------------ 234 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~------------ 234 (359)
+..+|||||+|+|..+..+++. .|+ ++++++|. | +.+. .|+
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988776654 674 58999997 4 1111 111
Q ss_pred --------CCCCceEeeCCCCC---CCC-----CccEEEEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 235 --------DTDNLKFIAGDMFQ---SIP-----PADAFFFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 235 --------~~~~v~~~~~d~~~---~~p-----~~D~i~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
...+++++.+|+.+ ..+ .||+|++-- +..-..++ ...+|+.+.++|+| ||.++...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys-- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARP---GGTLATFT-- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC--
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe--
Confidence 12457788999743 222 499999842 21111112 24599999999999 77766411
Q ss_pred cCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEE
Q 018205 297 INEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357 (359)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~ 357 (359)
. ...+++.|.++||.+.++.-.+....++.+
T Consensus 214 --a----------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a 244 (257)
T 2qy6_A 214 --S----------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCG 244 (257)
T ss_dssp --C----------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEE
T ss_pred --C----------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEE
Confidence 0 013567788899997766555444444443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.98 E-value=5e-06 Score=73.00 Aligned_cols=71 Identities=11% Similarity=0.284 Sum_probs=53.3
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-c-------cccccCCC-------CCCceEeeCCCCCC---C---
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-P-------HVVPKVPD-------TDNLKFIAGDMFQS---I--- 250 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~v~~~~~d~~~~---~--- 250 (359)
..+..+|||+|||+|..+..+++. +.+++++|+ + .+++.|+. .++++++.+|+.+. +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345679999999999999999986 578999999 5 55555542 25699999998542 2
Q ss_pred -CCccEEEEcchhcc
Q 018205 251 -PPADAFFFKAIFHA 264 (359)
Q Consensus 251 -p~~D~i~~~~vl~~ 264 (359)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999999655543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.98 E-value=3.6e-06 Score=73.60 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=56.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----CCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----TDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v~~~~~d~~~-~~p~--- 252 (359)
..+++.+. ..+..+|||||||+|.++. +. +.+..+++++|++ .+++.+++ .++++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 35555555 5567899999999999999 64 4443349999995 48876653 2479999999965 3332
Q ss_pred ---ccEEEEcchhccCCch
Q 018205 253 ---ADAFFFKAIFHAFVDE 268 (359)
Q Consensus 253 ---~D~i~~~~vl~~~~~~ 268 (359)
.+.++.++.-++.+.+
T Consensus 87 ~~~~~~~vvsNlPY~i~~~ 105 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHTSCEEEEEECCTTTHHH
T ss_pred ccCCceEEEECCCCCccHH
Confidence 2345555555555443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.4e-05 Score=69.57 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=56.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCC---CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIP---PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p---~~D~i~~~~vl 262 (359)
+.++.++||+||++|.++..++++ +.+|+++|+..+-......++|+++.+|.+...| .+|+|+|-.+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 467899999999999999999988 6799999986655544567899999999977333 49999997665
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.5e-06 Score=78.13 Aligned_cols=88 Identities=13% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---C--------------
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---I-------------- 250 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~-------------- 250 (359)
..+|||+|||+|.++..+++. ..+++++|++. +++.|+. .++++++.+|..+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999999875 45899999954 8877762 35799999998431 1
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
..||+|++.- |.. .+..++.+.|++ +|++++++.
T Consensus 292 ~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PRS---GLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Ccc---ccHHHHHHHHhC---CCEEEEEEC
Confidence 1589998632 111 234556666777 788888764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2e-05 Score=79.01 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=74.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC------------------------------------------CCCe
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF------------------------------------------PGIK 220 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~~ 220 (359)
.++.... +.+..+|||.+||+|.+++..+... +..+
T Consensus 181 ~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~ 258 (703)
T 3v97_A 181 AIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSH 258 (703)
T ss_dssp HHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCcc
Confidence 4444444 4567899999999999998887642 2358
Q ss_pred EEEeecc-cccccCCC-------CCCceEeeCCCCCC-CC----CccEEEEcchhc-cC-CchHHHHHHHHHHHhcc---
Q 018205 221 CTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-IP----PADAFFFKAIFH-AF-VDEDCLKILKRCREAIA--- 282 (359)
Q Consensus 221 ~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-~p----~~D~i~~~~vl~-~~-~~~~~~~~L~~~~~~L~--- 282 (359)
++|+|++ .+++.|+. .+.+++.++|+.+. .| .+|+|+++=-.. .+ .+++...+.+.+.+.|+
T Consensus 259 i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~ 338 (703)
T 3v97_A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQF 338 (703)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhC
Confidence 9999994 58887762 34689999999652 22 589999872221 12 23445556665555554
Q ss_pred cCCCCcEEEEEeee
Q 018205 283 SRGDRGKVIIIDIV 296 (359)
Q Consensus 283 p~~~gG~lli~~~~ 296 (359)
| ||.++|+...
T Consensus 339 ~---g~~~~ilt~~ 349 (703)
T 3v97_A 339 G---GWNLSLFSAS 349 (703)
T ss_dssp T---TCEEEEEESC
T ss_pred C---CCeEEEEeCC
Confidence 6 8999988653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.4e-05 Score=74.02 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=67.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC----C-----------------CCceEeeCCCCCC--
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD----T-----------------DNLKFIAGDMFQS-- 249 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~-----------------~~v~~~~~d~~~~-- 249 (359)
+..+|||+|||+|..+..++++.+..+++++|++ ..++.+++ . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 3689999999999999999999888899999994 46665541 1 2388999998431
Q ss_pred -CC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 -IP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 -~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+ .||+|++.- . ... ..+++.+.+.|++ ||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~---~~~--~~~l~~a~~~lk~---gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSP--MEFLDTALRSAKR---RGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-S---SCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred hccCCCCEEEeCC-C---CCH--HHHHHHHHHhcCC---CCEEEEEe
Confidence 22 499999532 1 111 3589999999999 78666543
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=63.50 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=66.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCc-eEeeC-CCCCCCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNL-KFIAG-DMFQSIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v-~~~~~-d~~~~~p-~~ 253 (359)
..+.++ . .+.+..+|||+||++|.++..++++.+-.+++++|+.. +...... ..++ .+..+ |++.-.+ .+
T Consensus 71 ~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 71 RWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 445555 3 46678899999999999999999876555788999843 2221110 1122 33322 4433122 49
Q ss_pred cEEEEcchhccCCch-----HHHHHHHHHHHhcccCCCC-cEEEE
Q 018205 254 DAFFFKAIFHAFVDE-----DCLKILKRCREAIASRGDR-GKVII 292 (359)
Q Consensus 254 D~i~~~~vl~~~~~~-----~~~~~L~~~~~~L~p~~~g-G~lli 292 (359)
|+|++...-+ -... ....+|+-+.++|+| | |.+++
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 9999965544 3221 123568888999999 7 77666
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-05 Score=73.78 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC------------------CCeEEEeecc-cccccCC------CCC-----CceEe
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP------------------GIKCTVLDLP-HVVPKVP------DTD-----NLKFI 242 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~~-~~~~~a~------~~~-----~v~~~ 242 (359)
....+|+|.+||+|.++..+++... ..+++|+|+. .+++.|+ ... ++.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4467999999999999988876531 2479999994 4776665 122 27899
Q ss_pred eCCCCCC----CCCccEEEEcchhccCCc------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 243 AGDMFQS----IPPADAFFFKAIFHAFVD------------EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 243 ~~d~~~~----~p~~D~i~~~~vl~~~~~------------~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
++|.+.. ...||+|+++--+..... .....+++++.+.|+| ||++.++-+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~p 313 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVVP 313 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEec
Confidence 9998762 235999998643332211 1123699999999999 899888754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.69 E-value=8.3e-05 Score=66.91 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=52.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC---C---CCccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS---I---PPADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~---~---p~~D~i~ 257 (359)
..+..+|||+|||+|..+..+++.. +..+++++|++. +++.+++ ..+++++.+|+.+. . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4567899999999999999999875 457999999954 7766552 35799999998541 1 2489999
Q ss_pred E
Q 018205 258 F 258 (359)
Q Consensus 258 ~ 258 (359)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=64.88 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC---------CCCCceEeeCCCCCCC------CCc-----
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP---------DTDNLKFIAGDMFQSI------PPA----- 253 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~v~~~~~d~~~~~------p~~----- 253 (359)
+...||++|||-=.....+.. .++++++-+|.|.+++..+ ...+..++..|+.+.+ .++
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998887666542 2257899999988766433 2567899999996521 123
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhh-h-hhhhh-----h-cCCcc
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY-D-MLMMV-----A-VRGSE 325 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~-~~g~~ 325 (359)
=++++-.+++++++++...+++.+.+.+.| |..++++....+.... ......+. . +.-.. . .....
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 254 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEW--REQMQLRFRRVSDALGFEQAVDVQELIY 254 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHH--HHHHHHHHHHHHC-----------CCTT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcch--hHHHHHHHHHHHHHcCCcCCCCcccccc
Confidence 367888999999999999999999999888 5566667665543111 00011111 1 10000 0 11122
Q ss_pred -cC-HHHHHHHHHHcCCcee
Q 018205 326 -RT-EKEWEKLFLDAGFSHF 343 (359)
Q Consensus 326 -~t-~~~~~~ll~~aGf~~~ 343 (359)
.+ .++..++|.+.||+.+
T Consensus 255 ~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 255 HDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CCTTCCCHHHHHTTTTEEEE
T ss_pred CCCChHHHHHHHHHCcCccc
Confidence 25 7899999999999987
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=74.40 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=68.1
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeecc-cccccCCC-------CCC-ceEeeCCCCC----CCC-CccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLP-HVVPKVPD-------TDN-LKFIAGDMFQ----SIP-PADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~-------~~~-v~~~~~d~~~----~~p-~~D~i~~ 258 (359)
+..+|||++||+|.++..++.+.++ .+++++|++ ..++.+++ .++ ++++.+|.++ ..+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998665 589999994 47766652 234 8999999843 223 4999998
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.- +... ..+++.+.+.|++ ||.|++..
T Consensus 132 DP----~g~~--~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTP--VPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp CC----SSCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred CC----CcCH--HHHHHHHHHHhCC---CCEEEEEe
Confidence 54 1111 3489999999999 77555544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.55 E-value=2.7e-05 Score=68.14 Aligned_cols=94 Identities=17% Similarity=0.304 Sum_probs=60.9
Q ss_pred HHHHhcccccCCC--CeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-c-------cccCC----C----CCCceEeeC
Q 018205 183 LIVKDCQPIFQGL--GSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-V-------VPKVP----D----TDNLKFIAG 244 (359)
Q Consensus 183 ~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~-------~~~a~----~----~~~v~~~~~ 244 (359)
.+.+.+. ..+. .+|||+|||+|..+..++.+ +.+++++|++. + ++.++ . ..+++++++
T Consensus 77 ~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp HHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 4455554 4445 89999999999999999998 56899999954 3 22221 1 157899999
Q ss_pred CCCC---CCC-CccEEEEcchhccCCchHHHHHHHHHHHhccc
Q 018205 245 DMFQ---SIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 245 d~~~---~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p 283 (359)
|..+ ..+ .||+|++.-.++.- ... ..+++..+.|++
T Consensus 153 D~~~~L~~~~~~fDvV~lDP~y~~~-~~s--aavkk~~~~lr~ 192 (258)
T 2oyr_A 153 SSLTALTDITPRPQVVYLDPMFPHK-QKS--ALVKKEMRVFQS 192 (258)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCCC-CC-------HHHHHHHH
T ss_pred CHHHHHHhCcccCCEEEEcCCCCCc-ccc--hHHHHHHHHHHH
Confidence 9843 233 49999997766542 221 344445555544
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0006 Score=58.52 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=62.6
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC----CeEEEeecccccccCCCCCCc---eEeeC-CCCCCCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG----IKCTVLDLPHVVPKVPDTDNL---KFIAG-DMFQSIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~~~~~a~~~~~v---~~~~~-d~~~~~p-~ 252 (359)
..+.+++ .+.+..+|||+||+.|.++...+++.+- -.++++|+ +.........++ .+..+ |+++..+ .
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 4566664 4788899999999999999998885211 12344443 111111111455 44447 9976333 5
Q ss_pred ccEEEEcchhccCCchH-----HHHHHHHHHHhcccCCCCc-EEEE
Q 018205 253 ADAFFFKAIFHAFVDED-----CLKILKRCREAIASRGDRG-KVII 292 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~-----~~~~L~~~~~~L~p~~~gG-~lli 292 (359)
+|+|+|-..= .-+... ....|.-+.++|+| || .+++
T Consensus 140 ~DvVLSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGE-SSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CSEEEECCCC-CCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCEEEeCCCC-CCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 9999975433 222111 12357777799999 77 5655
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0025 Score=57.71 Aligned_cols=146 Identities=12% Similarity=0.231 Sum_probs=101.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccccccc-CC----------------------------CCCCceEee
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPHVVPK-VP----------------------------DTDNLKFIA 243 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~-a~----------------------------~~~~v~~~~ 243 (359)
+...||-+|||.=.....+... .++++++=+|.|++++. .+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999988888765 35788999999886542 00 146889999
Q ss_pred CCCCC--CC---------C-C-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHH
Q 018205 244 GDMFQ--SI---------P-P-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAK 310 (359)
Q Consensus 244 ~d~~~--~~---------p-~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~ 310 (359)
.|+.+ .. . . .=++++=.++.+++.++..++|+.+.+..++ |.+++.|...++.. +...
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~----fg~~- 240 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDR----FGQI- 240 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSH----HHHH-
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCH----HHHH-
Confidence 99865 11 1 1 3377788899999999999999999998865 88888898865421 2111
Q ss_pred Hhhhhhhhhh-cCC--cccCHHHHHHHHHHcCCceeEEEEe
Q 018205 311 LLYDMLMMVA-VRG--SERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 311 ~~~~~~~~~~-~~g--~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+...+..... ..+ ...+.++..+.|.++||+.+++..+
T Consensus 241 M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 241 MIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111111000 011 2357889999999999998877665
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00027 Score=70.55 Aligned_cols=101 Identities=10% Similarity=0.084 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC---CCeEEEeecc-cccccC--C----------CCCCceEeeCCCCCC----CCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP---GIKCTVLDLP-HVVPKV--P----------DTDNLKFIAGDMFQS----IPP 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~~-~~~~~a--~----------~~~~v~~~~~d~~~~----~p~ 252 (359)
.+..+|+|.|||+|.++..+++..+ ..+++|+|+. .+++.| + ......+...|++.. ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4568999999999999999998875 3579999994 466655 1 112235566666542 235
Q ss_pred ccEEEEcchhcc-CC-ch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 253 ADAFFFKAIFHA-FV-DE-------------------------DCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 253 ~D~i~~~~vl~~-~~-~~-------------------------~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
||+|+++==+-. .. +. -...+++++.+.|+| ||++.++-+.
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP~ 467 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMPK 467 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEET
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEECh
Confidence 999998532211 11 10 123478899999999 8998886643
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0011 Score=56.13 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccccccc------CCCCCCceEeeC-CCCCCC-CCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPK------VPDTDNLKFIAG-DMFQSI-PPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~------a~~~~~v~~~~~-d~~~~~-p~~ 253 (359)
..+.+++. +.+..+|||+||++|.++...+....-.+|+++|+-.+-.. .-..+.|+|..+ |++.-. -.+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45666664 66778999999999999998888775558999999332111 113578999999 974422 239
Q ss_pred cEEEEcchhccCCchH--H---HHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 254 DAFFFKAIFHAFVDED--C---LKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~--~---~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+|+|--.= --+.+. . .++|.-+.++|++ |.++| ...-+.
T Consensus 146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~----~~fc~-KVl~py 190 (267)
T 3p8z_A 146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN----NQFCI-KVLNPY 190 (267)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS----CEEEE-EESCCC
T ss_pred cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc----CCEEE-EEccCC
Confidence 999985433 222222 1 2366666788887 55655 434333
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.40 E-value=4.3e-05 Score=71.14 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----C----CCceEeeCCCCCCC-----CCccEEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----T----DNLKFIAGDMFQSI-----PPADAFFF 258 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~----~~v~~~~~d~~~~~-----p~~D~i~~ 258 (359)
....+|||+|||+|..+..+++. +.+++++|++. +++.|+. . ++++++++|+.+.. ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34689999999999999999887 56899999954 8877652 1 47999999996531 25999998
Q ss_pred c
Q 018205 259 K 259 (359)
Q Consensus 259 ~ 259 (359)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00031 Score=68.01 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHC---CCCeEEEeecc-cccccCCC--------CCCceEeeCCCCCC-CC-----CccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAF---PGIKCTVLDLP-HVVPKVPD--------TDNLKFIAGDMFQS-IP-----PADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~~-~~~~~a~~--------~~~v~~~~~d~~~~-~p-----~~D~ 255 (359)
...+|+|.+||+|.++..+++.. +..+++|+|+. .+...|+. .+++.+..+|.+.. .| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 46799999999999999988875 35789999994 47666651 24678999998753 22 4999
Q ss_pred EEEcchh-ccC---------------------CchHHHHHHHHHHHhcc-cCCCCcEEEEEee
Q 018205 256 FFFKAIF-HAF---------------------VDEDCLKILKRCREAIA-SRGDRGKVIIIDI 295 (359)
Q Consensus 256 i~~~~vl-~~~---------------------~~~~~~~~L~~~~~~L~-p~~~gG~lli~~~ 295 (359)
|+++=-+ ..| .+.+ ..+++++.+.|+ | ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCC---ceeEEEEec
Confidence 9976111 011 0111 248999999999 8 899887653
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=57.81 Aligned_cols=110 Identities=11% Similarity=0.199 Sum_probs=71.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccc-ccc---CC--CCCCceEeeC-CCCC-CCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHV-VPK---VP--DTDNLKFIAG-DMFQ-SIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~~---a~--~~~~v~~~~~-d~~~-~~p~~ 253 (359)
..+.+++. +.+..+|||+||++|.++..++....-.+|+++|+-.. -+. .+ ..+-|.+..+ |++. +...+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 45556654 56677999999999999998887765457999999322 110 11 1244788888 8744 22349
Q ss_pred cEEEEcchhccCCchHH-----HHHHHHHHHhcccCCCC-cEEEEEeeecC
Q 018205 254 DAFFFKAIFHAFVDEDC-----LKILKRCREAIASRGDR-GKVIIIDIVIN 298 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~-----~~~L~~~~~~L~p~~~g-G~lli~~~~~~ 298 (359)
|+|+|--. .--+.+.+ .++|.-+.++|++ + |.++| ...-+
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~-KVl~p 207 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV-KVLCP 207 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE-EESCT
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE-EEcCC
Confidence 99998555 44443322 3467777899988 5 66655 44433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=82.63 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC-----CeEEEeeccc-ccccCCCC---CCceEeeCCCCCC---CC-CccEEEEcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG-----IKCTVLDLPH-VVPKVPDT---DNLKFIAGDMFQS---IP-PADAFFFKA 260 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~D~~~-~~~~a~~~---~~v~~~~~d~~~~---~p-~~D~i~~~~ 260 (359)
+..+||+||+|+|..+..+.+.... .+++..|++. ..+.|++. -.++....|..++ .+ .||+|++++
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 3579999999999887776665432 3689999965 77777642 1122222233222 12 499999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCC
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGF 340 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf 340 (359)
+||.-++. ...|++++++|+| ||.+++.+...... +......+... ...++...+.++|.++|.++||
T Consensus 1320 vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1320 ALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHP-----LGEMVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred cccccccH--HHHHHHHHHhcCC---CcEEEEEecccccc-----ccccccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence 99866443 5689999999999 99998877543110 00000000000 0011234577899999999999
Q ss_pred ceeEEEE
Q 018205 341 SHFKITP 347 (359)
Q Consensus 341 ~~~~~~~ 347 (359)
+.+....
T Consensus 1388 ~~~~~~~ 1394 (2512)
T 2vz8_A 1388 HLVALKR 1394 (2512)
T ss_dssp EEEEEEE
T ss_pred ceeeecc
Confidence 9876643
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00021 Score=62.57 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC--CCCceEeeCCCCC--C------C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD--TDNLKFIAGDMFQ--S------I 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~v~~~~~d~~~--~------~ 250 (359)
+.+++.+. ..+...+||.+||.|.++..++++ +.+++++|. +.+++.|++ .+|++++.+|+.+ . .
T Consensus 12 ~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 12 QEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcCC
Confidence 67778776 566789999999999999999998 679999999 447655432 2689999999943 1 1
Q ss_pred CCccEEEE
Q 018205 251 PPADAFFF 258 (359)
Q Consensus 251 p~~D~i~~ 258 (359)
..+|.|++
T Consensus 88 ~~vDgIL~ 95 (285)
T 1wg8_A 88 ERVDGILA 95 (285)
T ss_dssp SCEEEEEE
T ss_pred CCcCEEEe
Confidence 34888885
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=67.05 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC--------------CCCceEeeCCCCCC-------CC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD--------------TDNLKFIAGDMFQS-------IP 251 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~v~~~~~d~~~~-------~p 251 (359)
++++||-||+|.|..+..+++. |..+++.+|+ +.+++.+++ .+|++++.+|..+. ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999875 5579999999 558776541 35789999998531 12
Q ss_pred CccEEEEcchhccC-Cc-------hHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAF-VD-------EDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~-~~-------~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|+.--.-... ++ .-...+++.++++|+| ||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 59999974221110 11 1124688999999999 6765543
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=49.24 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=44.9
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALT 102 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t 102 (359)
+..|++.|.+.+.++|..|||+.+|+ +...+.+.++.|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence 44577777653368999999999999 6899999999999999998754 5778764
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00026 Score=68.71 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCC---------------CCeEEEeecc-cccccCCC-------CCCceEeeCCCCCC--
Q 018205 195 LGSLVDVGGGTGSFARIISEAFP---------------GIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQS-- 249 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~-- 249 (359)
..+|+|.+||+|.++..+++..+ ..+++|+|+. .+++.|+. ..++.+.++|.+..
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999888765432 4689999994 47766651 23455588998652
Q ss_pred CC--CccEEEEcchhc--cCCch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 250 IP--PADAFFFKAIFH--AFVDE-------------------------DCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 250 ~p--~~D~i~~~~vl~--~~~~~-------------------------~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+ .||+|+++=-+. .|..+ ....+++++.+.|+| ||++.++-
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl 395 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL 395 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence 22 499999852222 12110 112589999999999 89988865
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=54.04 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=59.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------C--CCCceEeeCCCCCC-------------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------D--TDNLKFIAGDMFQS------------- 249 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~--~~~v~~~~~d~~~~------------- 249 (359)
.+..+|||+||| .-+..+++ .++.+++.+|.. +..+.|+ - .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 457899999985 45555555 457899999984 4555554 1 46899999995321
Q ss_pred -----------C---CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 250 -----------I---PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 250 -----------~---p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
. ..||+|++-.-. ....+..+.+.|+| || ++++|.+
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~---GG-~Iv~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITR---PV-TLLFDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSS---CE-EEEETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCC---Ce-EEEEeCC
Confidence 1 249999985421 12456667789999 55 5566654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=57.50 Aligned_cols=96 Identities=17% Similarity=0.208 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeeccc-cc--------------------------ccCC------
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPH-VV--------------------------PKVP------ 234 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~-~~--------------------------~~a~------ 234 (359)
..+.+|||+|+..|..+..++... ++.+++++|.-+ +- +.++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 346899999999999888887654 478899999622 11 1111
Q ss_pred -C-CCCceEeeCCCCCC---CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 235 -D-TDNLKFIAGDMFQS---IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 235 -~-~~~v~~~~~d~~~~---~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
- .++|+++.||+.+. .+ .+|+|++-.-.+ +.....|..+...|+| |.++++|..
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p----GGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV----GGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE----EEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC----CEEEEEcCC
Confidence 0 37899999999542 32 388888754221 2345689999999999 456666644
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00064 Score=49.67 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=51.2
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.++..-.++.|+..| . ++.|+.|||+.+|+ +...+.+.|+.|...|++.... +.|++++.++
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~---------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG---------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC---------CEEEECCCch
Confidence 344455667788888 6 78999999999999 6899999999999999999873 5888887654
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00037 Score=52.32 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=52.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhc--CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccccC
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSAL--EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~~~ 111 (359)
+..|+..|.+. +++|+.+||+.+ |+ ....+++.|+.|...|+|+..+ .+.|++|+.+..+...
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~--------rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA--------NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS--------TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC--------CceEEECchHHHHHHH
Confidence 45567777653 699999999999 99 6799999999999999999874 5689999988755544
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0016 Score=48.02 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..-.++.|+..|.+ ++.|+.|||+.+|+ .+..+.+.|+.|...|++....
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEEC
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 333445556666655 68999999999999 6789999999999999998765
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00085 Score=59.24 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=46.9
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..|++.++. +++|++++..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA--------DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT--------TSEEEECTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCcEEehHHH
Confidence 4577777765468999999999999 6899999999999999999885 5789998754
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=45.0
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+|..-.++.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 34445566778888876 79999999999999 6899999999999999998775
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=45.78 Aligned_cols=60 Identities=8% Similarity=0.076 Sum_probs=47.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcc-cHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKAD-GLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~-~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|+..|+++..+.+ .-.|.+|+.++
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~g------RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGTT------PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECSS------SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCCC------CCCeEeCHhHH
Confidence 44556667664 79999999999999 456 899999999999999866422 23788887665
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=49.60 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.+|..-.++.|+..|... ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 4455555677888888742 79999999999999 6899999999999999998764
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0015 Score=49.68 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=44.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+|..-.++.|+..|.+ ++.++.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~ 65 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHK 65 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEe
Confidence 44555567777777775 79999999999999 6899999999999999998765
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0014 Score=57.38 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=48.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ ++..+.|+|+.|+..|++++... .++|++++..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-------~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-------ARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-------SSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-------CCcEEcCHHH
Confidence 3467777654468999999999999 78999999999999999998752 3799998754
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=48.82 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=39.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 22 TRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEe
Confidence 44556666744 68999999999999 6899999999999999998764
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0017 Score=48.27 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=40.8
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 25 ~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 25 DYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp SHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3345556666665 68999999999999 6899999999999999998765
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0011 Score=49.63 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|+..|.+ ++.|+.|||+.+|+ ++..+.+.|+.|...|++....
T Consensus 27 r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 27 RLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp THHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3445556654 68999999999999 6899999999999999998764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.022 Score=49.80 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=61.2
Q ss_pred cCCCCeEEEeCC------CcchHHHHHHHHCCC-CeEEEeecccccccCCCCCCceEeeCCCCCC--CCCccEEEEcchh
Q 018205 192 FQGLGSLVDVGG------GTGSFARIISEAFPG-IKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS--IPPADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~--~p~~D~i~~~~vl 262 (359)
.+.+.+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+. .++++|+.+. ...||+|++-..=
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 467899999996 66773 44455775 6999999977554332 5589997442 2349999964221
Q ss_pred -------ccC--CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 263 -------HAF--VDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 263 -------~~~--~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
..- ...-+..++.=+.+.|+| ||.+++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 100 112356678888999999 7877773
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.017 Score=51.30 Aligned_cols=127 Identities=21% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCcchHHHH----HHHHCCCCe--EEEeecccccccCC--------------------CCCCc--eEeeCC
Q 018205 194 GLGSLVDVGGGTGSFARI----ISEAFPGIK--CTVLDLPHVVPKVP--------------------DTDNL--KFIAGD 245 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~----l~~~~p~~~--~~~~D~~~~~~~a~--------------------~~~~v--~~~~~d 245 (359)
+.-+|+|+|=|+|..... +.+..|+.+ ++.+|-. .++... ...++ ++..+|
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~-pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKE-LLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESS-CCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHH-HHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 346899999999974432 334567765 4555531 111110 02333 566777
Q ss_pred CCC---CCC--CccEEEEcchhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhh
Q 018205 246 MFQ---SIP--PADAFFFKAIFHAFVDED--CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMM 318 (359)
Q Consensus 246 ~~~---~~p--~~D~i~~~~vl~~~~~~~--~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
+.+ .++ .+|++++-. |-.-.+++ ...++++++++++| ||.+.-..
T Consensus 175 a~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt------------------------ 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS------------------------ 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC------------------------
T ss_pred HHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe------------------------
Confidence 743 233 389888643 21111121 13599999999999 66554311
Q ss_pred hhcCCcccCHHHHHHHHHHcCCceeEEEEeCCceeEEEE
Q 018205 319 VAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSLIEV 357 (359)
Q Consensus 319 ~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~ 357 (359)
+...+++-|.++||.+.++.-.++-.-+..+
T Consensus 227 --------aag~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 227 --------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp --------CCHHHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred --------CcHHHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 1234678899999998888776665555544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0067 Score=54.40 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=53.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeec-ccccccCC--CCCCceEeeCCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDL-PHVVPKVP--DTDNLKFIAGDMF 247 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~--~~~~v~~~~~d~~ 247 (359)
+.+++.+. ..+...+||..||.|..+..++++. |+.+++++|. +.+++.|+ ..+|++++.+++.
T Consensus 47 ~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 47 DEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFS 114 (347)
T ss_dssp HHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGG
T ss_pred HHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHH
Confidence 78888887 6677899999999999999999985 7889999999 45777654 2478899999883
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=54.85 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=47.2
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.|++.|...++++|+.|||+.+|+ ++..+.|+|+.|+..|++++... +++|++++...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-------~~~Y~lg~~~~ 67 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-------AGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-------GCEEEECSHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------CCeEEECHHHH
Confidence 456666554358999999999999 78999999999999999998741 37899987543
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0026 Score=44.23 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+|.|+.|||+.+|+ ....+++-|+.|+..|+|....
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 579999999999999 5678999999999999999874
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=46.10 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..-.++.|+..|.. +++.|..|||+.+|+ +...+.+.|+.|...|++....
T Consensus 21 l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 21 MSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 333455667777765 358999999999999 6899999999999999998775
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=50.51 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 28 SSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+++|..-.++.|+..|.. +++|+.|||+.+|+ .+..+.+.|+.|...|+|+...
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~ 105 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRK 105 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4566667788889999986 79999999999999 6899999999999999998775
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=54.41 Aligned_cols=57 Identities=16% Similarity=0.360 Sum_probs=47.0
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+.+|+ ++..+.|+|+.|+..|++++.. .++|++++..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~--------~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC--------CCcEEECHHH
Confidence 3456666654358999999999999 7899999999999999999873 5889998753
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=43.53 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=44.9
Q ss_pred hcCcchhcccCC--CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 37 ELDIPEVIHKHG--RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 37 ~lglf~~L~~~~--~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
+..|++.|.+.+ .++|+.|||+++|+ +...+.+.|..|...|++...+. .++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~------~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS------SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCceEecC
Confidence 455666776631 37999999999999 67899999999999999988642 146676654
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0036 Score=54.72 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=46.7
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ ++..+.|+|+.|+..|++.+.. +++|++++..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~~ 82 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPEM 82 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHHH
Confidence 3456666543368999999999999 7899999999999999999875 3489998753
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.013 Score=45.29 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+....++++.+-|...+|... .. ++.++.||++.+ |+ ....|.+.|+.|+..|||++... +.
T Consensus 15 pi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~---~~ 77 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVY---HQ 77 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEE---CS
T ss_pred cHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEec---CC
Confidence 466777888888877666543 23 699999999999 99 68999999999999999998742 11
Q ss_pred C-ccceEeccccccccc
Q 018205 94 Q-EEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~-~~~~~~~t~~~~~l~ 109 (359)
+ ..-.|++|+.++.+.
T Consensus 78 d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 78 VPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp SSCEEEEEECTTGGGGH
T ss_pred CCCeEEEEECHhHHHHH
Confidence 1 113599999887665
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0041 Score=54.26 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=47.7
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+.|++.|...+++.|+.|||+.+|+ ++..+.|+|+.|+..|++++. +++|++++...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~ 73 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVL 73 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHH
Confidence 3456667643468999999999999 789999999999999999987 48999988653
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0065 Score=42.64 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=44.5
Q ss_pred hcCcchhcccC--CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 37 ELDIPEVIHKH--GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 37 ~lglf~~L~~~--~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+..|++.|.+. |.++|+.|||+++|+ +...+.+.|..|...|+|...+. .++.|.+.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~------~~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG------TPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS------SSCEEEEC----
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC------CCCeeEEeCcHH
Confidence 44566666653 137999999999999 67899999999999999987642 146787776543
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0046 Score=54.17 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=47.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+.|++.|...++++|+.|||+++|+ ++..+.|+|+.|+..|++++. +++|++++..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD---------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHH
Confidence 3466777643468999999999999 789999999999999999986 4899998754
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0037 Score=46.91 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCC--HHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPIT--LPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t--~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+ .+..+.+.|+.|+..|+|++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 3445566666777655554 3333 6777 99999999 99 68999999999999999998741
Q ss_pred ccCccceEeccccccccc
Q 018205 92 QQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 92 ~~~~~~~~~~t~~~~~l~ 109 (359)
....|++|+.++.+.
T Consensus 79 ---r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 ---QITTYALTEKGMNVR 93 (111)
T ss_dssp ---SSEEEEECHHHHHHH
T ss_pred ---CcEEEEECccHHHHH
Confidence 135788888876544
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.006 Score=46.62 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=42.0
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-.++.|+..|.+ ++.++.+||+.+|+ .+..+.+.|+.|...|++....
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3456677777875 68999999999999 6899999999999999998764
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=52.77 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=74.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC------------CCCCCceEeeCCCCC--C-CC-Ccc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV------------PDTDNLKFIAGDMFQ--S-IP-PAD 254 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a------------~~~~~v~~~~~d~~~--~-~p-~~D 254 (359)
..++.+|||+.+|.|.=+..+++..++..++++|++. -++.. +...++.+...|... . .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 4567899999999999999999987776899999843 32211 123578888888743 1 22 499
Q ss_pred EEEE----cc----hh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc
Q 018205 255 AFFF----KA----IF-------HAFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303 (359)
Q Consensus 255 ~i~~----~~----vl-------~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~ 303 (359)
.|++ +. ++ ..+..++ -.++|+++.+.|+| ||.|+...........+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~~ENE 293 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSHLQNE 293 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCTTTTH
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCchhhCH
Confidence 9984 33 11 1122221 14689999999999 88888877776655443
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0063 Score=42.55 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 35 AVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.....|.+.|.+ .+.|+.|||+++|+ ....+++.|..|+..|++..... .+-.|+++..
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~------~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDD------IPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSS------SSCEEESCC-
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC------CCCcceeccC
Confidence 345566777876 34999999999999 67999999999999999988752 1456766654
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.016 Score=43.34 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccc
Q 018205 13 FEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSA 91 (359)
Q Consensus 13 ~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~ 91 (359)
.-+...+++++.+.|...+|.. |.. ++.+..||++.+ ++ +...+.+.|+.|+..|+++....
T Consensus 9 ~c~~~~~l~~l~~~~~~~IL~~---------L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~--- 71 (112)
T 1z7u_A 9 QTSINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESF--- 71 (112)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEE---
T ss_pred CCCHHHHHHHHcCccHHHHHHH---------HHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 3345666776666666555543 333 589999999999 99 68999999999999999987641
Q ss_pred ccC-ccceEeccccccccc
Q 018205 92 QQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 92 ~~~-~~~~~~~t~~~~~l~ 109 (359)
+.+ -.-.|.+|+.++.+.
T Consensus 72 ~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 72 NELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp CCSSCEEEEEECHHHHHHH
T ss_pred CCCCCeEEEEECHhHHHHH
Confidence 011 012488888776443
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.008 Score=44.69 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=53.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccC-
Q 018205 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ- 94 (359)
Q Consensus 17 ~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~- 94 (359)
..+++++.+.|...+|. .|.. ++.++.||++.+ |+ ++..+.+.|+.|++.|++++.... .+
T Consensus 5 ~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~---~d~ 67 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILX---------HLTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYN---QVP 67 (107)
T ss_dssp HHHHHHHCSTTHHHHHH---------HHTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEEC---SSS
T ss_pred HHHHHHHcCccHHHHHH---------HHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecC---CCC
Confidence 44555555566555443 3333 689999999999 99 689999999999999999976421 11
Q ss_pred ccceEeccccccccc
Q 018205 95 EEEAYALTLTSKLFL 109 (359)
Q Consensus 95 ~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.++.+.
T Consensus 68 r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 68 PKVEYELSEYGRSLE 82 (107)
T ss_dssp CEEEEEECTTGGGGH
T ss_pred CeEEEEECccHHHHH
Confidence 112588888775443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.1 Score=52.11 Aligned_cols=148 Identities=13% Similarity=0.163 Sum_probs=99.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC--------CCeEEEeeccccccc-CC-----------------------------C
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP--------GIKCTVLDLPHVVPK-VP-----------------------------D 235 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~-a~-----------------------------~ 235 (359)
+...||-+|||.=.....|...+| ++.++=+|.|++++. .+ .
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999999987755 677888888875531 10 0
Q ss_pred CCCceEeeCCCCCC--C-----------CC-ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 236 TDNLKFIAGDMFQS--I-----------PP-ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 236 ~~~v~~~~~d~~~~--~-----------p~-~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
.++..++..|+.+. + +. .=++++=.+|.+++.++..++|+.+.+ + + ++.+++.|...+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14789999999651 1 11 225677789999999999999999985 4 5 588889898877544
Q ss_pred cchHHHHHHHhhhhhhhhh-cC--CcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 302 EDAQLTEAKLLYDMLMMVA-VR--GSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~--g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+. +... +...+..... .. ....+.++..+.|.+.||..+....+
T Consensus 262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 432 2211 1111111100 01 12447999999999999987666543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.012 Score=53.59 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ 248 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~ 248 (359)
...|||||.|.|.++..|+++....+++++|+.. .+...+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 5889999999999999999875445799999843 443222 35789999999964
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=44.68 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+.+|+ +...++++|+.|...|+++..++ ..|.|++++..
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g------~~ggy~L~~~~ 72 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG------AYGGYVLGSEP 72 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSCG
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC------CCCceEeCCCH
Confidence 68999999999999 78999999999999999987641 13678877643
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.017 Score=45.00 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 35 AVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
..++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 37 ~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~---~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNP---SDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSEEC-------------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEeeccCC---CCCCeeeeEECHHHHHHH
Confidence 4556677777764 69999999999999 678999999999999999986410 000 01266676665443
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.01 Score=41.25 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=38.2
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
|.+.|.+. +.++++|||+.+++ .+..++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 45666664 79999999999999 689999999999999999987
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=43.01 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=42.8
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++..+||..+|+ +.+.+++.++.|...|+++... +.|.+|+.+..+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~---------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG---------KQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC---------CeeEEChhHHHHH
Confidence 899999999999 6899999999999999999984 7799999987554
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0065 Score=44.22 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=50.9
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
.++..-.++.|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++...... .......|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~--~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI--ADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC--SSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC--CCcceEEEEECHHHH
Confidence 455555667777777542 68999999999999 689999999999999999865310 000123577777653
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=42.04 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=38.4
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.+.|.+. +.++++|||+.+++ .+..++|.|+.|+..|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45666664 79999999999999 6899999999999999999873
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.027 Score=45.08 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=40.9
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+.+++ ++..++++|..|...|++...++. .|.|++++..
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG~------~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRGA------HGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECST------TCEEEECSCT
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecCC------CCceEecCCH
Confidence 68999999999999 789999999999999999877531 4789887643
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.011 Score=45.80 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=55.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccC
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ 94 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~ 94 (359)
...+++++.+.|...+|.. |.. ++.++.||++.+ |+ .+..+.+.|+.|+..|+|++.... .+
T Consensus 25 ~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~---~d 87 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYP---VV 87 (131)
T ss_dssp HHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEEC---SS
T ss_pred HHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecC---CC
Confidence 4556666666666554433 333 699999999999 79 689999999999999999976410 01
Q ss_pred -ccceEeccccccccc
Q 018205 95 -EEEAYALTLTSKLFL 109 (359)
Q Consensus 95 -~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.++.+.
T Consensus 88 ~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 88 PPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCeEEEEECccHHHHH
Confidence 012588998776544
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=46.22 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|+.+||+.+|+ +...+.+.++.|+..|++.... ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence 68999999999999 6899999999999999999875 47899998776443
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0098 Score=41.84 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=41.2
Q ss_pred HhcCcchhcccCC-CCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHG-RPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-+..|++.|.+.+ ++.|++||++.+ ++ +...+.|.|+.|+..|++.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 3455777887643 689999999999 88 6899999999999999998764
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.13 Score=40.44 Aligned_cols=55 Identities=16% Similarity=0.232 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 248 (359)
-..-|+|+|=|+|.+=..+.+.+|+.+++++|..-.+.-....+.-.++.||+.+
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~ 94 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRE 94 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHH
T ss_pred CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHH
Confidence 3578999999999999999999999999999974333333334455788888854
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.026 Score=41.78 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+...+++++.+.|...+|. .|.. ++.++.||++.+ |+ +...+.+.|+.|+..|++++.... .
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~---~ 76 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYP---E 76 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEEC---S
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecC---C
Confidence 3556667777777665554 3333 689999999999 59 689999999999999999976421 1
Q ss_pred C-ccceEeccccccccc
Q 018205 94 Q-EEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~-~~~~~~~t~~~~~l~ 109 (359)
+ ..-.|.+|+.++.+.
T Consensus 77 d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp SSCEEEEEECHHHHTTH
T ss_pred CCCeeEEEECccHHHHH
Confidence 1 012488898876543
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.023 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=37.2
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.|++.|.+. ++.|..|||+.+|+ +...+++.|+.|...|++...
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 355566553 68999999999999 689999999999999999854
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.018 Score=45.31 Aligned_cols=66 Identities=8% Similarity=0.100 Sum_probs=46.1
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++.++..|...++++|..+||+.+++ +...+.++++.|+..|++++.... .+. .+.+|+.++.+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~-----~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDP-----SDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC----------------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCc-----cccchheeeECHHHHHHH
Confidence 345556666544457899999999999 689999999999999999876410 012 267777766444
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.031 Score=44.16 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=45.6
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.+|++.+.+... . +++.|+++||+.+++ +...++++|..|...|+++..++ .|.|++++..
T Consensus 15 yAl~~L~~La~~---~--~~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~rG-------~GGy~L~~~p 75 (149)
T 1ylf_A 15 IAVHILSILKNN---P--SSLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-------PGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHHS---C--GGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSCG
T ss_pred HHHHHHHHHHhC---C--CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEccC-------CCceEeCCCh
Confidence 455555554431 2 258999999999999 78999999999999999987652 4788887653
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.01 Score=48.77 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+++|.-=.++.|+..|.+ ++.|+.+|++.++ + ++..+.+.|+.|...|||+..++..........|++++.+.
T Consensus 17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 344455577888888876 7999999999996 7 67899999999999999986543211111123477666543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.019 Score=51.15 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=33.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP 234 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~ 234 (359)
.+...|||++||+|.++..+++. +.+++++|+++ +++.|+
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 45689999999999999998876 67899999954 777665
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.018 Score=39.13 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=47.6
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALT 102 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t 102 (359)
.+-.|+++|.++|.|++..+||+.+|+ +..-+...|..|-..|.+.... .-.|+++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk--------RCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS--------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC--------CceeeCC
Confidence 355677888887899999999999999 7899999999999999998775 4667765
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.041 Score=44.15 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=41.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++.|.++||+.+++ +...+++++..|...||++..++ ..|.|++.+...
T Consensus 27 ~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG------~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG------KNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS------TTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC------CCCCeEecCChh
Confidence 68999999999999 68999999999999999987652 146799876443
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.031 Score=43.88 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++.|+++||+.+++ +...++++|..|...|+++..++ ..|.|++++..
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG------~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG------AKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS------SSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC------CCCCeeecCCc
Confidence 58999999999999 78999999999999999987652 14789887643
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.11 Score=50.14 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=64.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-------------CCCeEEEeec-ccccccCC------CCCCceEeeCCCCC-CC-
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-------------PGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQ-SI- 250 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~-~~- 250 (359)
....+|+|-.||+|.++....+.. ...+++|+|+ +.+...|+ ..+.-.+..+|.+. +.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 445799999999999988765532 1346999999 44655554 12334677788754 21
Q ss_pred -----CCccEEEEcchhc---------cCC-----chHHHHHHHHHHHhcc-------cCCCCcEEEEEee
Q 018205 251 -----PPADAFFFKAIFH---------AFV-----DEDCLKILKRCREAIA-------SRGDRGKVIIIDI 295 (359)
Q Consensus 251 -----p~~D~i~~~~vl~---------~~~-----~~~~~~~L~~~~~~L~-------p~~~gG~lli~~~ 295 (359)
..||+|+++=-+- .++ .+....+++.+.+.|+ | ||++.++-+
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 1499999763221 111 1112357888888887 5 788888654
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.012 Score=43.11 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHhcCcchh-cccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEV-IHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~-L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-.++.|+.. +.. ++.++.|||+.+|+ .+..+.+.|+.|... ++....
T Consensus 26 ~~~Rl~IL~~l~~~--~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 26 HPMRLKIVNELYKH--KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp SHHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEE
T ss_pred CHHHHHHHHHHHHC--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheE
Confidence 3445556633 334 68999999999999 689999999999999 998664
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=43.67 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=40.6
Q ss_pred HHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 35 AVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 35 a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.++.|+..|.+ ++.|+.+||+.+|+ ++..+.+.|+.|+..|++....
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 345666666766 58999999999999 7899999999999999998764
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.025 Score=44.55 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=55.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE 95 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~ 95 (359)
..+.++++.+.|...+|... .. ++.++.||++.+|+ ....+.+.|+.|++.|++++.... .+.
T Consensus 14 ~~~~l~~l~~~w~l~IL~~L---------~~--g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~---~d~ 76 (146)
T 2f2e_A 14 VARPLDVIGDGWSMLIVRDA---------FE--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE---SGS 76 (146)
T ss_dssp TTTTHHHHCSSSHHHHHHHH---------HT--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS---SSS
T ss_pred HHHHHHHhCCchHHHHHHHH---------Hh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecC---CCC
Confidence 34456666666665555433 23 68999999999999 689999999999999999987421 011
Q ss_pred cceEeccccccccc
Q 018205 96 EEAYALTLTSKLFL 109 (359)
Q Consensus 96 ~~~~~~t~~~~~l~ 109 (359)
.-.|++|+.++.+.
T Consensus 77 ~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 77 HQEYRLTDKGRALF 90 (146)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eEEEEECchHHHHH
Confidence 23688888776544
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.016 Score=42.16 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=45.9
Q ss_pred CcchhcccCCCCCCHHHH----HHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQL----VSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~el----a~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.++..|... ++.|..+| |+.+++ +...+.++++.|+..|++++.... ....|.+|+.++.+.
T Consensus 12 ~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-----r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 12 IVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-----GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEECHHHHHHH
T ss_pred HHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-----CceEEEECHHHHHHH
Confidence 344555442 68999999 999999 689999999999999999886411 024577777766444
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.019 Score=43.88 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=39.3
Q ss_pred hcCcchhcccCCCC-CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRP-ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+.++| +|+.|||+.+++ +...+.|.|+.|+..|++.+.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 44566666654456 999999999999 789999999999999999876
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.019 Score=49.51 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=49.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.+.|+..|... +++|..|||+.+|+ ++..+.|.|+.|...|++++.+. ...|++|+.+..+.
T Consensus 154 ~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-------~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 154 EMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-------DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-------TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-------ccEEEECHHHHHHH
Confidence 34455555442 68999999999999 78999999999999999998631 46799998776543
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.062 Score=42.81 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=48.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|... +++|..+||+.+++ +...+.++++.|+..|+|++.... .|. .-.+.+|+.++.+.
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~---~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDP---THGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECC---SSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCC---CcCCeeEeEECHhHHHHH
Confidence 34566667664 68999999999999 689999999999999999987411 110 11377787776544
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.027 Score=43.76 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+++.|..+||+.+|+ +...+.+.++.|+..|+++... ..|.+|+.+..+
T Consensus 29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~---------~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE---------DGVWITNNGTRS 77 (139)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET---------TEEEECHHHHHH
T ss_pred CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC---------CeEEEChhHHHH
Confidence 368999999999999 6899999999999999999873 678888876543
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.037 Score=46.17 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=48.8
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
+|..-.++.|+..|.. +|+|+.+|++.+|+ +...+.+.|+.|...|++.........+...-.|++|+..
T Consensus 11 aL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 4444455566666655 79999999999999 6899999999999999998764210000112247776644
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.032 Score=40.30 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
++|..+||+.+++ +...+.++++.|+..|++.... ++ .+++|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~--------d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL--------EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE--------ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC--------CCCeEEEEEChhHHHHH
Confidence 4899999999999 6899999999999999994332 33 478887776443
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.058 Score=43.33 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=48.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+|++.... .+. .-.+.+|+.++.+.
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHP---TSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS---SCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCC---CCCCeeEEEECHHHHHHH
Confidence 44566666653 68999999999999 689999999999999999886410 010 11377777776444
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.037 Score=39.91 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=42.7
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCccc-HHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADG-LFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~-l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
+..|...+.+.|..|||+.+++ +... +.+.++.|+..|++..... + -...+.+|+.++.+.
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~-----drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETL-----SYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEE-----ETTEEEEEECHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCC-----CCCeEEEEECHhHHHHH
Confidence 3344443237999999999999 6788 9999999999999984321 0 012366777665443
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.035 Score=42.95 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=48.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++.... +.+. .-.|.+|+.+..+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~---~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRN---PDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---SSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC---CCCCCeeEEEECHHHHHHH
Confidence 44566667653 68999999999999 68999999999999999987641 0110 12477787776554
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.066 Score=38.69 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
+++.+..+||+.+++ +...|.|.|..|+..||++.... .++.+...+|+.++.+
T Consensus 34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~----~D~R~~v~LT~~G~~~ 87 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE----ADGRGHASLTQEGAAL 87 (96)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC----TTSCEEEEECHHHHHH
T ss_pred CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC----CCCceeEEECHHHHHH
Confidence 368899999999999 78999999999999999997541 2233445666666533
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.068 Score=41.95 Aligned_cols=45 Identities=7% Similarity=0.101 Sum_probs=38.8
Q ss_pred CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 52 TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 52 t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
|+++||+.+++ +...++++|..|...|||...++ .|.|++++...
T Consensus 25 s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~rG-------~GGy~Lar~p~ 69 (145)
T 1xd7_A 25 SSEIIADSVNT---NPVVVRRMISLLKKADILTSRAG-------VPGASLKKDPA 69 (145)
T ss_dssp CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCSS-------SSSCEESSCGG
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeecC-------CCCceecCCHH
Confidence 99999999999 78999999999999999987752 47788876543
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.13 Score=40.17 Aligned_cols=43 Identities=7% Similarity=0.174 Sum_probs=37.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
..++..| . .++.|..+||+.+++ +...+.+.++.|+..|+++.
T Consensus 41 ~~iL~~l-~-~~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 41 SHVLNML-S-IEALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHH-H-HSCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHH-H-cCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEe
Confidence 4467777 4 379999999999999 67999999999999999997
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.038 Score=43.77 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=42.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLF 108 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l 108 (359)
++.|..+||+.+|+ +...+.+.++.|+..|+|+... +..+.+|+.+..+
T Consensus 53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~ 101 (155)
T 2h09_A 53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKL 101 (155)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHH
Confidence 68999999999999 6899999999999999998875 4678888776543
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.017 Score=49.25 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~ 85 (359)
+.+|..-.++.|+..|.. +|+|+.|||+.+|+ .+..+.+.|+.|...|++..
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEE
Confidence 344555566777888875 79999999999999 67999999999999999987
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.021 Score=45.95 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=47.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|...++++|..+||+.+++ +...+.++++.|+..|+|++.... .|. .-.+.+|+.++.+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCA---SDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC-----------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCC---CCCCeeEEEECHHHHHHH
Confidence 45556666553468999999999999 789999999999999999986410 010 12367777766444
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.025 Score=43.65 Aligned_cols=66 Identities=12% Similarity=0.250 Sum_probs=47.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++...... .+. .-.+.+|+.++.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~---~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNP---NDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCC---CCCceeEEEECHHHHHHH
Confidence 44556666653 68999999999999 678999999999999999876310 010 11266777665443
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.023 Score=43.94 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=47.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADP---DDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEET---TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC---CCCCeeeeEECHhHHHHH
Confidence 45567777553 69999999999999 689999999999999999876310 000 11367777665443
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.023 Score=44.51 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=46.1
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++++... +.|. ...+.+|+.++.+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~---~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGH---SEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC------------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecC---CCCcceeEeEECHhHHHHH
Confidence 344566666654 69999999999999 68999999999999999987631 0010 12366676665433
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.033 Score=43.98 Aligned_cols=66 Identities=8% Similarity=0.148 Sum_probs=47.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .+ -.-.+.+|+.++.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~---~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADA---KDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC---CcCCeeEeEECHHHHHHH
Confidence 34566666653 68999999999999 689999999999999999876310 00 012377777765443
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.028 Score=43.31 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=39.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++...
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeec
Confidence 34455666553 68999999999999 6899999999999999999863
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.025 Score=44.98 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=46.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|...+++.|..+||+.+++ +...+.++++.|+..|++++.... .+. .-.+.+|+.++.+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSA---DDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC-----------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC---CCCCeEEEEEChhHHHHH
Confidence 45567777322379999999999999 678999999999999999986310 000 11266777665443
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.034 Score=42.97 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=46.0
Q ss_pred cCcchhcccCCC-CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGR-PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
..++..|...++ +.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.+..+.
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSG---KDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS---SCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCC---cCCCeeeeEECHHHHHHH
Confidence 345555655322 8999999999999 689999999999999999876410 010 11366676665443
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.073 Score=44.80 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+++++..+||+.+++ +...+.+.++.|...|++++.. ...+.+|+.++.+.
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLV 68 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHH
Confidence 479999999999999 6899999999999999999986 57789998876443
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.025 Score=43.73 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=47.2
Q ss_pred hcCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|...+ ++.|..+||+.+++ +...+.+.++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~---~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVD---AQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---CC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCC---CCCCCeeeeEECHHHHHHH
Confidence 344555665532 48999999999999 68999999999999999997641 1110 11366777665444
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.77 E-value=0.039 Score=42.50 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=46.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~---~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP---NDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT---TCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCc---ccCceeEeEEChhHHHHH
Confidence 34455555543 68999999999999 689999999999999999986410 010 01367777766444
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.13 Score=40.37 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=46.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNT---KDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS---SCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCC---CCCceEEEEECHHHHHHH
Confidence 3456666553 68999999999999 689999999999999999886410 010 11366777665443
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.041 Score=44.15 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=44.4
Q ss_pred hcCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 37 ELDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
++.|+..|... ++++|..+||+.+++ +...+.++++.|+..|+|++.... .+. .+.+|+.++.+.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~-----~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKP-----ENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCC-----CCCCeeEeEECHHHHHHH
Confidence 44455566553 269999999999999 678999999999999999986411 022 366676665443
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.12 Score=40.21 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=48.5
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~---~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEG---EQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCC---SSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccC---CCCCceeeeeEChhHHHHH
Confidence 345566666553 58999999999999 68999999999999999997641 0110 12377777766443
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.03 Score=44.04 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=46.5
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... ++.|..+||+.+++ +...+.++++.|+..|+|++.... .|. .-.+.+|+.++.+.
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~---~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQ---SDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC------------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCC---CCcceeeeeECHHHHHHH
Confidence 345556666653 79999999999999 689999999999999999976410 010 12367777665443
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.16 Score=39.35 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=48.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|++++.... .+. .+.+|+.++.+.
T Consensus 38 ~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~-----~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDS-----KDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCC-----CCCceEEEEECHHHHHHH
Confidence 345667777663 34 99999999999 689999999999999999987410 011 378888776544
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.04 Score=43.43 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=47.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceee--ecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFST--ANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~--~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... +++|..+||+.+++ +...+.++++.|+..|++++ ... +.+. .-.+.+|+.++.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~---~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTI---PNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC-----CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCC---CCCCceeEeEECHHHHHHH
Confidence 44556666654 68999999999999 68999999999999999998 421 0110 12477777766443
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.023 Score=44.23 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=47.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~---~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREIS---TEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCC---CccCceeeeeECHHHHHHH
Confidence 34455666553 69999999999999 68999999999999999997641 0110 12377777766444
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.03 Score=44.01 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=46.9
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEecccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLF 108 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l 108 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~---~d~R~~~~~lT~~G~~~ 107 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNP---EHARSHRYWLTPRGEAI 107 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCS---SSTTSCEEEECHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc---ccccceeeEEChhhHHH
Confidence 34456666653 68999999999999 689999999999999999986410 010 1146677766543
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.44 E-value=0.07 Score=41.53 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=47.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|...+++.|..+||+.+|+ +...+.+.++.|+..|++++.... .+. .-.+.+|+.+..+.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP---QDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC---------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCC---CCCCceeeEECHHHHHHH
Confidence 445666677651269999999999999 689999999999999999876310 010 12366777665433
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=92.41 E-value=0.046 Score=42.50 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=47.3
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|. . ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~---~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDR---EDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCC---CCCceEEEEECHHHHHHH
Confidence 3445566666 2 79999999999999 689999999999999999876410 010 11366777665443
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.043 Score=40.74 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=38.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++.|+..+...|.+.|..+||+.+|+ +...+++.|+.|...|+++..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34455555332348999999999999 689999999999999999876
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=92.22 E-value=0.059 Score=39.45 Aligned_cols=47 Identities=13% Similarity=0.310 Sum_probs=38.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|+..|... ++.|..+||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34455555442 68999999999999 6899999999999999998764
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.066 Score=42.29 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=45.5
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
++..|...+++.+..+||+.+++ +...+.++++.|+..|++++... +. +. ...+|+.++.+.
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~---~~--DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTS---AN--DRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEC---SS--CTTCEEEEECGGGHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecC---CC--CCcchhhhcCHHHHHHH
Confidence 44455443456788999999999 78999999999999999997641 11 22 377787776544
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.16 E-value=0.052 Score=42.18 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=45.7
Q ss_pred cCcchhc-ccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEecccccccc
Q 018205 38 LDIPEVI-HKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLF 108 (359)
Q Consensus 38 lglf~~L-~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l 108 (359)
+.++..| .. +++.|..+||+.+++ +...+.+.++.|+..|+++..... .+ -.-.+.+|+.+..+
T Consensus 40 ~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~---~d~R~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 40 WLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA---EDRRAKHIVLTPKADVL 105 (146)
T ss_dssp HHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB---TTBCSCEEEECTTHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCC---cccCeeeeEECHhHHHH
Confidence 4456666 43 379999999999999 689999999999999999886410 01 01136667665543
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.074 Score=38.27 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=45.5
Q ss_pred cchhcccCCCCCCHHHHHH-hcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVS-ALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~-~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
|+-.|... ++.|+.+||+ ..++ +...+.|=++.|...|+++..+ +| +.+|+.++.+.
T Consensus 21 iL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~--------~D-l~LT~~G~~~l 78 (95)
T 1bja_A 21 ILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG--------DG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET--------TE-EEECHHHHHHH
T ss_pred HHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC--------CC-eeeCHhHHHHH
Confidence 34445554 5999999999 9999 7889999999999999999332 34 88898877554
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=92.02 E-value=0.051 Score=42.15 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~---~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREE---KDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCC---CCcceeeeeEChHHHHHH
Confidence 34455666553 79999999999999 689999999999999999987410 010 12477777766444
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.038 Score=43.25 Aligned_cols=66 Identities=8% Similarity=0.111 Sum_probs=46.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++...... .+. .-.+.+|+.++.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~---~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDE---HDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---C---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC---CCcceeEeEECHhHHHHH
Confidence 34455666553 68999999999999 689999999999999999876310 010 11366777665443
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.038 Score=43.97 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=45.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+|++.... .+ -...+.+|+.++.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHG---DDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC------------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCC---CCCCeeEEEECHHHHHHH
Confidence 44566667653 69999999999999 689999999999999999876310 00 012366676665433
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.036 Score=44.11 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=48.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+ -.-.+.+|+.++.+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDS---DDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-----CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCC---CCCCeeEEEECHHHHHHH
Confidence 345566677653 68999999999999 689999999999999999876310 00 012366777665443
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.87 E-value=0.06 Score=41.77 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=47.2
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .+.+|+.++.+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~-----~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDP-----ADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC-----CCCceEEEEECHHHHHHH
Confidence 345566666553 68999999999999 689999999999999999986310 012 366676665443
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.063 Score=41.57 Aligned_cols=66 Identities=11% Similarity=0.230 Sum_probs=47.1
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLF 108 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l 108 (359)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++.... +.+.. -.+.+|+.+..+
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~---~~d~R~~~~~lT~~G~~~ 104 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERS---EVDQREVFIHLTDKSETI 104 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEEC---SSSTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecC---CCCcceEEEEEChHHHHH
Confidence 345566666653 68999999999999 67899999999999999988641 00101 136667666543
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.04 Score=42.79 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=46.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++...... .+. .-.+.+|+.++.+.
T Consensus 32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~---~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDA---SNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCC---CCCceeeeEEChhHHHHH
Confidence 3455556553 68999999999999 689999999999999999986410 010 11267777665443
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.075 Score=41.74 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=47.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~l~ 109 (359)
++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+ -.-.+.+|+.++.+.
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAA---SDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----------CEEEECHHHHHGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCc---ccCCeeEeeECHHHHHHH
Confidence 34456666653 68999999999999 689999999999999999986410 00 011367777666444
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.039 Score=43.83 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=45.6
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 54 ~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~---~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 54 PFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDE---KDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC------CCEEEEECHHHHHHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCC---CCCCeeEEEECHHHHHHH
Confidence 345555543 68999999999999 689999999999999999987410 110 11366777665443
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.094 Score=40.70 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=38.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++.|+..|... + .|..+||+.+++ +...+.+.++.|+..|++++..
T Consensus 39 ~~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 39 TQEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEecc
Confidence 345566666662 4 999999999999 6899999999999999998764
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.13 Score=42.55 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=43.1
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++....+..|+..|.+ ++.|..|||+.+|+ .+..+.+.++.|...|++...
T Consensus 16 ~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3344566678888874 79999999999999 679999999999999999876
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.39 E-value=0.051 Score=42.87 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=47.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.|+..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP---VDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT---TTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC---CCcceeEEEECHHHHHHH
Confidence 345566666653 58999999999999 689999999999999999876310 010 11366777665443
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=91.20 E-value=0.21 Score=36.36 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHhcCcch-hcccCCCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 31 SLKCAVELDIPE-VIHKHGRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 31 ~l~~a~~lglf~-~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+...++..|.+ .+.. |..+ |..+||+.+|+ ....+++.|+.|...|+++...
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344445555665 3443 3455 99999999999 6789999999999999998775
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.083 Score=41.08 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=48.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEecccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFLK 110 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~~ 110 (359)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++..... .+. .-.+.+|+.++.+..
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~---~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSE---EDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCS---SCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCC---CCCCeeEEEECHhHHHHHH
Confidence 44556666553 58999999999999 689999999999999999876410 010 123777887765543
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=91.13 E-value=0.33 Score=40.43 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=46.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.|+..|... +++|..+||+.+++ +...+.++++.|+..|+|.+.... .|. .-.+.+|+.++.+.
T Consensus 51 ~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 51 HHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRL---NDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC---------CEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCC---CCCceEEEEECHHHHHHH
Confidence 4455566543 68999999999999 689999999999999999987410 010 01467777776443
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.34 Score=30.69 Aligned_cols=44 Identities=11% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.++|+.|+|...|+ +.+..+.-|..|...|-+.+.+ .+|++.|-
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs---------SRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS---------SRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC---------CEEEECC-
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc---------cccccCcc
Confidence 58999999999999 6788889999999999999884 89988763
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.15 Score=40.38 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=47.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~---~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSIS---DADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCC---cccCCeeEeeECHHHHHHH
Confidence 34466666653 68999999999999 68999999999999999998641 0110 12377777766444
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.12 Score=39.83 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=42.2
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+-.+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEE
Confidence 445666777776544799999999999 67 6789999999999999998764
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=90.84 E-value=0.051 Score=44.28 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=45.8
Q ss_pred hcCcchhcccCCCC--CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKHGRP--ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~~~--~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.|+..|...+++ +|..+||+.+++ +...+.+.++.|+..|++++.... .+. .-.+.+|+.++.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDE---RDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCC---CCCCeeEEEECHHHHHHH
Confidence 34466666653333 999999999999 678999999999999999876310 000 11366776665443
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.15 Score=37.17 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|..|||+.+|+ +...+.+.|+.|...|++....
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 68999999999999 6899999999999999999874
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.26 Score=36.99 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=48.8
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhcC--------CCCCCc-ccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSALE--------INPTKA-DGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~~--------~~~~~~-~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
...++-|+..|.+ +|.+.-+|++.+. + +. ..+.+.|+.|+..|+|+...... +....-.|++|+.
T Consensus 12 ~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~-~~~~r~~Y~LT~~ 85 (118)
T 2esh_A 12 WWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTT-VSPPRKIYRITPQ 85 (118)
T ss_dssp HHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECS-SSSCEEEEEECHH
T ss_pred chHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecC-CCCCceEEEEChH
Confidence 3444555666665 6999999999883 5 67 88999999999999998764210 0111235899988
Q ss_pred ccccc
Q 018205 105 SKLFL 109 (359)
Q Consensus 105 ~~~l~ 109 (359)
++...
T Consensus 86 G~~~l 90 (118)
T 2esh_A 86 GKLYL 90 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.13 Score=40.17 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=38.5
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..|+..|.+ +++.|..|||+++|+ .+..+.+.++.|...|++...
T Consensus 8 ~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 8 LNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 356667765 378999999999999 689999999999999999865
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.11 Score=40.82 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=39.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 5 ~~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQY-NAKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTT-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 4556777765 368999999999999 689999999999999999864
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=90.61 E-value=0.075 Score=37.06 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=37.0
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCC-CCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINP-TKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~-~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+..|.. .++.|+.||++.++..+ -+...+.++|+.|+..|++.+..
T Consensus 12 ~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 334455544 26899999999997310 05688999999999999999875
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.48 E-value=0.13 Score=42.56 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.|.|..|||+.+|++ ...+.+.|+.|+..|++....
T Consensus 22 g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 4589999999999994 568999999999999998774
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=90.45 E-value=0.23 Score=38.66 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=32.7
Q ss_pred cCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..++..|...+ ++.|..+||+.+++ +...+.+.++.|+..|++++..
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeC
Confidence 34555555432 68999999999999 6789999999999999998764
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.069 Score=41.22 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=39.8
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|+++...
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeec
Confidence 345566666553 68999999999999 6899999999999999998763
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=90.41 E-value=0.29 Score=33.33 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=36.0
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|.+ |+..|+.+||+++|+ ...-+.|.|.-|...|++....
T Consensus 21 i~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence 346665 245999999999999 6788999999999999998774
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=90.40 E-value=0.14 Score=40.22 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=38.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.. +++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 9 ~~~iL~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAA-DGRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3456666665 368999999999999 689999999999999999765
|
| >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 | Back alignment and structure |
|---|
Probab=90.27 E-value=0.24 Score=33.97 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.++++++|+.+++. ..+++..++++|++.|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 678999999999993 3799999999999999999875
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=90.23 E-value=1.3 Score=34.71 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=47.7
Q ss_pred HhcCcchhcccC-CCCCCHHHHHHhcC-CCCCCcccHHHHHHHHHccCceeeecccccccCccc----eEeccccccccc
Q 018205 36 VELDIPEVIHKH-GRPITLPQLVSALE-INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE----AYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~-~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~----~~~~t~~~~~l~ 109 (359)
.++.|+..|..+ .+..|+++|++.++ + ....+++.|+.|+..|++++..... .....| .|++|+.++...
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~-~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPR-AKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCC-CTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCc-CcccCCCCceEEEECHHHHHHH
Confidence 344444544332 14689999999998 8 6899999999999999998653210 000112 699998887544
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=90.17 E-value=0.29 Score=44.98 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-------CCCeEEEeeccccc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-------PGIKCTVLDLPHVV 230 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 230 (359)
+...+|+|+|+|+|.++..+++.. ..++++.+|+|..+
T Consensus 79 p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 79 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 345689999999999988877642 34589999997633
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.11 Score=37.78 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=38.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCC-CCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINP-TKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~-~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|...|.+. +++|+.||++.++..+ -....+.++|+.|+..|+|.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 34556666543 6999999999998520 14578999999999999999875
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=89.97 E-value=0.16 Score=40.52 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=38.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..|+..|.+ +++.|..|||+++|+ .+..+.+.++.|...|++...
T Consensus 13 ~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 13 IKILQVLQE-NGRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 346666665 368999999999999 679999999999999999865
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=89.53 E-value=0.089 Score=43.20 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=49.8
Q ss_pred HhcCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccccc
Q 018205 36 VELDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFLK 110 (359)
Q Consensus 36 ~~lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~~ 110 (359)
.++.++..|... ++++|..+||+.+++ +...+.++++.|+..|+|++.... .+.. -.+.+|+.++.+..
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSP---HDKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS---SCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC---CCCCeeEEEECHHHHHHHH
Confidence 445566666531 268999999999999 689999999999999999986411 1101 24778888775543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.40 E-value=0.26 Score=42.70 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKV 233 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a 233 (359)
.+...|||..||+|.++....+. +.+++++|+.+ .++.+
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~ 250 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQA 250 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHH
Confidence 45789999999999999988776 67999999954 55544
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=89.37 E-value=0.17 Score=39.84 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=38.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+++|+ ++..+.+.++.|...|++...
T Consensus 10 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 3346666765 378999999999999 689999999999999999864
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=89.34 E-value=0.19 Score=39.34 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+-.+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEe
Confidence 344556788886645799999999999 66 6789999999999999998764
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.58 Score=40.37 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHH-------CCCCeEEEeec----cccccc------------------------------
Q 018205 194 GLGSLVDVGGGTGSFARIISEA-------FPGIKCTVLDL----PHVVPK------------------------------ 232 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~~~~------------------------------ 232 (359)
-+..|+|+|+-.|..+..++.. .++.+++++|. |+.-+.
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3579999999999988886642 36789999995 221000
Q ss_pred --CC---CCCCceEeeCCCCCCC-------C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 233 --VP---DTDNLKFIAGDMFQSI-------P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 233 --a~---~~~~v~~~~~d~~~~~-------p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.+ ..++++++.|++.+.+ | .+|++++-.=.+ +.....+..+...|+| |.++++|..
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~----GGvIv~DD~ 218 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTK----GSIVAFDEL 218 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEE----EEEEEESST
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCC----CcEEEEcCC
Confidence 00 1378999999985422 3 378887744221 3345689999999999 555555543
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.19 Score=39.50 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=39.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+.+|+ .+..+.+.++.|...|++...
T Consensus 11 d~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSE-NSRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3456677766 378999999999999 678999999999999999865
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=89.06 E-value=0.79 Score=35.30 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=33.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++.|..+||+.+|+ +...+.+.++.|+..|+++..
T Consensus 40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 68999999999999 689999999999999999886
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=89.06 E-value=0.29 Score=40.08 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=45.0
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCc-eeeecccccccCccceEecccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGF-FSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gl-l~~~~~~~~~~~~~~~~~~t~~ 104 (359)
-...|...|.+.++++|+.|||+.+|+ ..+.++|-++.|...|+ +... .+.|.+...
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~---------~~Gy~l~~~ 79 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCTT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE---------CCEEEECCc
Confidence 445677777653357999999999999 68999999999999999 7654 366777654
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.05 E-value=0.18 Score=37.96 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=51.0
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhcC------CCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSALE------INPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~------~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
+++.-..++-|+..|.+ +|.+.-+|++.+. + +...+...|+.|+..|+++..............|++|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34445555666667766 7999999988876 6 56899999999999999986531000000123599999
Q ss_pred cccccc
Q 018205 104 TSKLFL 109 (359)
Q Consensus 104 ~~~~l~ 109 (359)
.++...
T Consensus 84 ~G~~~l 89 (117)
T 3elk_A 84 AGKKFL 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887444
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.22 Score=40.19 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=39.1
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.. +++.|..|||+++|+ .+..+.+.++.|...|++...
T Consensus 19 d~~IL~~L~~-~~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKK-DARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 3456777766 368999999999999 689999999999999999754
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=88.76 E-value=0.16 Score=40.06 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=38.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ +++.|..|||+++|+ .+..+.+.++.|.+.|++...
T Consensus 9 ~~~il~~L~~-~~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3446666665 368999999999999 689999999999999999764
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=88.56 E-value=0.3 Score=37.26 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|.++||+.+|+ +...+.+.++.|+..|+|....
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 7899999999999999999864
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=88.56 E-value=1.4 Score=39.70 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCC-eEEEeeccc-ccccCC-CCCCceEeeCCCCCC----CC--CccEEEEcchhccC
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGI-KCTVLDLPH-VVPKVP-DTDNLKFIAGDMFQS----IP--PADAFFFKAIFHAF 265 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~~----~p--~~D~i~~~~vl~~~ 265 (359)
..+|+|+-||.|.+...+.+..-.. .+.++|+.. .++..+ ..+...++.+|+.+- ++ .+|+++...-...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3589999999999999999884222 478889844 555443 234456788888542 22 58999975443222
Q ss_pred C--------chHHHHHHHHHHHhcccCCCC--cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 266 V--------DEDCLKILKRCREAIASRGDR--GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 266 ~--------~~~~~~~L~~~~~~L~p~~~g--G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
+ ++..-.++.++.++++.. . -.+++.|.+..-.. + .+.+.+.+.|
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~~---------------------~--~~~~~i~~~l 136 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFEV---------------------S--STRDLLIQTI 136 (343)
T ss_dssp --------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGGG---------------------S--HHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccccC---------------------H--HHHHHHHHHH
Confidence 2 111123455444554320 1 25777776653110 0 1345677888
Q ss_pred HHcCCceeE
Q 018205 336 LDAGFSHFK 344 (359)
Q Consensus 336 ~~aGf~~~~ 344 (359)
++.||.+..
T Consensus 137 ~~~GY~v~~ 145 (343)
T 1g55_A 137 ENCGFQYQE 145 (343)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCeeEE
Confidence 889987644
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=88.55 E-value=0.13 Score=39.14 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=45.9
Q ss_pred cCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 38 LDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
+.++..|... +++.|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~---~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRN---EHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCC---SSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC---CCCCCeeEEEECHHHHHHH
Confidence 3345555442 258999999999999 68999999999999999988531 1110 12366777665443
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.32 E-value=0.21 Score=39.82 Aligned_cols=46 Identities=7% Similarity=0.270 Sum_probs=39.6
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|+..|.+ ++++|..+||+++|+ .+..+.+-++.|...|++...
T Consensus 5 d~~il~~L~~-~~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQE-DSTLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTT-CSCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 4567778876 479999999999999 678999999999999999754
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=88.25 E-value=0.17 Score=36.13 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=36.8
Q ss_pred cchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+..|.+.+ .+++..+|++++++ +...+.++|+.|+..||+.+..
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 444554421 48999999999999 7899999999999999999654
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=88.24 E-value=0.09 Score=39.67 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhcC----CCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALE----INPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.|..+||+.++ + ....+.++|+.|+..|++.+..
T Consensus 23 ~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEe
Confidence 6899999999999 6 5789999999999999999875
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=88.15 E-value=0.42 Score=35.87 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=48.6
Q ss_pred HHHHHhcCcchhcccCCCCCCHHHHHHhc------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 32 LKCAVELDIPEVIHKHGRPITLPQLVSAL------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 32 l~~a~~lglf~~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
++-.+++=|+..|.+ +|.+--+|++.+ ++ +...+...|+.|+..|+|+..............|++|+.+
T Consensus 8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G 82 (117)
T 4esf_A 8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAG 82 (117)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHH
T ss_pred HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHH
Confidence 333444445556665 799999999887 56 6789999999999999998763110000012348899887
Q ss_pred cccc
Q 018205 106 KLFL 109 (359)
Q Consensus 106 ~~l~ 109 (359)
+...
T Consensus 83 ~~~l 86 (117)
T 4esf_A 83 RQEL 86 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=87.93 E-value=0.19 Score=38.92 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=37.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
..|...|.. +++.|..|||+.+|+ +...+.+.|+.|...|++...
T Consensus 7 ~~il~~L~~-~~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEecc
Confidence 345556654 368999999999999 689999999999999999755
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.19 Score=39.34 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
+++|..+||+.+++ +...+.++++.|+..|++++.... . +. ...+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~---~--DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNP---N--DGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---------CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecC---C--cCceeEEEECHHHHHHH
Confidence 68999999999999 789999999999999999987421 1 22 266777766443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=87.32 E-value=2 Score=39.21 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=61.2
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCe-EEEeeccc-ccccCC-CCCCceEeeCCCCCC----C-------CCccEEEEcch
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIK-CTVLDLPH-VVPKVP-DTDNLKFIAGDMFQS----I-------PPADAFFFKAI 261 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~~----~-------p~~D~i~~~~v 261 (359)
.+++|+-||.|.++..+.++ +.+ +.++|+.. .++..+ ..+...++.+|+.+- + +.+|+|+..--
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999888 454 56889844 444333 245677888888541 1 35899996543
Q ss_pred hccCC-------chHHHHHHHHHH---HhcccCCCCcEEEEEeeecCC
Q 018205 262 FHAFV-------DEDCLKILKRCR---EAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 262 l~~~~-------~~~~~~~L~~~~---~~L~p~~~gG~lli~~~~~~~ 299 (359)
...++ ++....++.++. +.++| .+++.|.+..-
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~gl 123 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPGI 123 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchHh
Confidence 33332 122223444333 44566 68888877543
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=87.28 E-value=0.27 Score=37.96 Aligned_cols=50 Identities=12% Similarity=0.304 Sum_probs=40.7
Q ss_pred HHhcCcchhcccCC-CCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 35 AVELDIPEVIHKHG-RPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 35 a~~lglf~~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.+.-|++.|...+ ++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 34555778887644 689999999998 56 6789999999999999998764
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.26 E-value=0.37 Score=37.92 Aligned_cols=51 Identities=10% Similarity=0.344 Sum_probs=42.9
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 556667888887655799999999998 56 6789999999999999998764
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.20 E-value=0.34 Score=30.72 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=38.2
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.|++-+...||-+.++..++..|+ ..+-+..+|+-|.+.|++.-+
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 456667766788899999999999 678899999999999999754
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=0.27 Score=38.52 Aligned_cols=35 Identities=11% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+++|..+||+.+++ +...+.++++.|+..|++...
T Consensus 51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEee
Confidence 46899999999999 789999999999999999543
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=86.76 E-value=0.51 Score=35.28 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHhcCcchhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEec
Q 018205 30 TSLKCAVELDIPEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYAL 101 (359)
Q Consensus 30 ~~l~~a~~lglf~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~ 101 (359)
.+++-..++=|+..|.+ +|.+--+|.+.+ ++ +...+.+.|+.|+..|+++.......+......|++
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 34444455556667766 799988998887 45 678999999999999999875310000001234889
Q ss_pred cccccccc
Q 018205 102 TLTSKLFL 109 (359)
Q Consensus 102 t~~~~~l~ 109 (359)
|+.++...
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98876443
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=86.42 E-value=0.58 Score=34.10 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=35.9
Q ss_pred CcchhcccCCCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|...+.. |+.+ |..+||+.+|+ ....+++-|+.|...|+++...
T Consensus 32 ~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34444544 3455 99999999999 6789999999999999998764
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=3.7 Score=36.47 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=71.2
Q ss_pred CeEEEeCCCcchHHHHHHHHCCCCe-EEEeeccc-ccccCCCCCCceEeeCCCCC----CCCCccEEEEcchhcc-----
Q 018205 196 GSLVDVGGGTGSFARIISEAFPGIK-CTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----SIPPADAFFFKAIFHA----- 264 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~----- 264 (359)
.+|+|+=||.|.+...+.+. +.+ +.++|+.. .++.-+..-.-.++.+|+.+ .+|.+|+++.+.=...
T Consensus 1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCCSEEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 47999999999999998877 454 45778843 44332221223677888843 3667999985422111
Q ss_pred ----CCchHHHHHHHH---HHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHH
Q 018205 265 ----FVDEDCLKILKR---CREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 265 ----~~~~~~~~~L~~---~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
..|+. -.++.+ +.+.++| .+++.|.+..-.. ..++ ...+.+.+.|++
T Consensus 79 ~~~g~~d~R-~~L~~~~~r~i~~~~P-----k~~~~ENV~gl~~------------------~~~~--~~~~~i~~~l~~ 132 (331)
T 3ubt_Y 79 SLRGIDDPR-GKLFYEYIRILKQKKP-----IFFLAENVKGMMA------------------QRHN--KAVQEFIQEFDN 132 (331)
T ss_dssp EECCTTCGG-GHHHHHHHHHHHHHCC-----SEEEEEECCGGGG------------------CTTS--HHHHHHHHHHHH
T ss_pred CccCCCCch-hHHHHHHHHHHhccCC-----eEEEeeeeccccc------------------cccc--chhhhhhhhhcc
Confidence 22332 234443 3445577 5788887643110 0111 134667788888
Q ss_pred cCCceeE
Q 018205 338 AGFSHFK 344 (359)
Q Consensus 338 aGf~~~~ 344 (359)
.||.+..
T Consensus 133 ~GY~v~~ 139 (331)
T 3ubt_Y 133 AGYDVHI 139 (331)
T ss_dssp HTEEEEE
T ss_pred CCcEEEE
Confidence 9987543
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.02 E-value=0.37 Score=37.38 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=41.6
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..+.-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|++.|++.+..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 445666778887655799999999988 45 6789999999999999998764
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.79 E-value=0.52 Score=36.36 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
...|.++||+++|+ +.+-+.+.|+.|...|+++..
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 46799999999999 789999999999999999975
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=85.55 E-value=0.35 Score=37.38 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=37.4
Q ss_pred cCcchhcccCCCCCCHHHHHHhcC----CCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALE----INPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+..|...+++.|..+|++.++ + +...+.++|+-|+..|+|.+..
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 344455543126899999999998 5 5789999999999999999875
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=85.22 E-value=0.29 Score=38.33 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=48.5
Q ss_pred HHHhcCcchhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 34 CAVELDIPEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 34 ~a~~lglf~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
--.++-|+..|.+ +|++.-||++.+ ++ ....+.+.|+.|+..|+|+............-.|++|+.+
T Consensus 40 g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G 114 (145)
T 1xma_A 40 GYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEG 114 (145)
T ss_dssp GTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHH
T ss_pred CcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHH
Confidence 3445556666665 689988988887 46 6799999999999999998763210000012358889887
Q ss_pred cccc
Q 018205 106 KLFL 109 (359)
Q Consensus 106 ~~l~ 109 (359)
+.+.
T Consensus 115 ~~~l 118 (145)
T 1xma_A 115 IKYY 118 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=84.97 E-value=0.68 Score=42.44 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.++++...+..|++.|. . +++|..|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec
Confidence 45677778888999998 4 79999999999999 6899999999999999998864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.74 E-value=1.7 Score=38.69 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=51.9
Q ss_pred CCeEEEeCCCc--chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCCCccEEEEcchhccCCchHH
Q 018205 195 LGSLVDVGGGT--GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDC 270 (359)
Q Consensus 195 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~~~~ 270 (359)
..+|.=||+|. +.++..+++.....+++++|.+. .++.+.+..-+.-...|..+ ....+|+|+++- +....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence 36899999885 34555566553323899999843 54444322222222334423 345689998753 44456
Q ss_pred HHHHHHHHHhccc
Q 018205 271 LKILKRCREAIAS 283 (359)
Q Consensus 271 ~~~L~~~~~~L~p 283 (359)
..+++++...+++
T Consensus 108 ~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 108 REIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHhhccCC
Confidence 6789999999988
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=84.61 E-value=0.43 Score=40.44 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=43.3
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
++.|+.++|+.+++ .+..+.+.++.|+..|||++.... ....+++|+.++.+.
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~-----R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK-----RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC-----CeEEEEECHHHHHHH
Confidence 57899999999999 789999999999999999987310 025688888877555
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=84.44 E-value=0.28 Score=41.59 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=40.6
Q ss_pred CCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 51 ITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
.+..+||+.+++ +...+.+.++.|+..|++++.. +..+.+|+.++.+.
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHH
Confidence 344999999999 6789999999999999999885 46788998886443
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.38 E-value=0.76 Score=34.58 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=42.5
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~ 103 (359)
.-.|...+.. .|.++.+|++.+++ ++..+..||+.|...|.+.... ++.|..+.
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~--------~~~~~~~~ 62 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV--------KDRYYRND 62 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec--------CCceECHH
Confidence 3345556643 57899999999999 7889999999999999998886 56665444
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=84.01 E-value=1.3 Score=39.63 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCe-E-EEeeccc-ccccCCC-CCCceEeeCCCCCC----CC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIK-C-TVLDLPH-VVPKVPD-TDNLKFIAGDMFQS----IP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~-~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~----~p--~~D~i~~~~vl~ 263 (359)
...+++|+-||.|.+...+.+..-+.+ + .++|+.. .++..+. .+.. +..+|+.+- ++ .+|+++.+.-..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 356899999999999999988742234 4 5899944 4443321 1111 567888541 23 489999654433
Q ss_pred cC-----------CchHHHHHHHHHHH-hcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 264 AF-----------VDEDCLKILKRCRE-AIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 264 ~~-----------~~~~~~~~L~~~~~-~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.+ .|+. -.++.++.+ +++.....-.+++.|.+..-.. + .+.+.+
T Consensus 88 ~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---------------------~--~~~~~i 143 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKPKHIFIENVPLFKE---------------------S--LVFKEI 143 (327)
T ss_dssp TCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---------------------S--HHHHHH
T ss_pred CcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCCCEEEEEchhhhcC---------------------h--HHHHHH
Confidence 33 2332 246666666 5542000136888886643110 0 134678
Q ss_pred HHHHHHcCCceeEE
Q 018205 332 EKLFLDAGFSHFKI 345 (359)
Q Consensus 332 ~~ll~~aGf~~~~~ 345 (359)
.+.|++.||.+...
T Consensus 144 ~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 144 YNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHTTCEEEEE
T ss_pred HHHHHhCCCEEEEE
Confidence 88889999986544
|
| >3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A* | Back alignment and structure |
|---|
Probab=83.87 E-value=1.3 Score=38.51 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCC----CeEEEeeccc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPG----IKCTVLDLPH 228 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~~ 228 (359)
++..|+=||||.|.+...|++.+|+ ++.+++|+..
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap 98 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRH 98 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCc
Confidence 4579999999999999999998875 5899999833
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=83.31 E-value=1.3 Score=40.99 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=32.3
Q ss_pred CCCCeEEEeCCCcchHHHHHH-HHCCC-CeEEEeec-cccccc
Q 018205 193 QGLGSLVDVGGGTGSFARIIS-EAFPG-IKCTVLDL-PHVVPK 232 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 232 (359)
.+...|+|||++.|.++..++ +..+. .+++++|+ |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 567899999999999999988 56664 79999999 544443
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=83.18 E-value=0.64 Score=34.76 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=49.0
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhc------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSAL------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+++-.+++=|+..|.+ +|.+--||++.+ ++ +...+...|+.|+..|+++..............|++|+.
T Consensus 9 l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~ 83 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSS 83 (116)
T ss_dssp HHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHH
T ss_pred HHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHH
Confidence 3333344445566665 799988999887 45 678999999999999999875311000001224889988
Q ss_pred ccccc
Q 018205 105 SKLFL 109 (359)
Q Consensus 105 ~~~l~ 109 (359)
++...
T Consensus 84 G~~~l 88 (116)
T 3hhh_A 84 GEAEL 88 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76443
|
| >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=82.96 E-value=0.55 Score=36.91 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHhcCcchhcccCC-CCCCHHHHHHhc-----CCCCCCcccHHHHHHHHHccCceeeec
Q 018205 35 AVELDIPEVIHKHG-RPITLPQLVSAL-----EINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 35 a~~lglf~~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-.+.-|++.|...+ ++.|++||.+.+ ++ +...+.|.|+.|+..|++.+..
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 34455777776544 689999999998 55 6789999999999999998764
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=82.80 E-value=0.91 Score=38.29 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.+..+||+.+++ +...+.+.++.|+..|++++.. ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHH
Confidence 4456999999999 6789999999999999999885 46789999886443
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=82.33 E-value=1.7 Score=36.82 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=42.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALT 102 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t 102 (359)
.-|...|.. ++.|+++||+.+|+ +++.+...|+-|...|+++... +++..+.
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~--------~~~~~~~ 219 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN--------DNTVVLD 219 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET--------TTEEEEC
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec--------CCeEEec
Confidence 445556665 79999999999999 6899999999999999998765 5666544
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=82.31 E-value=0.43 Score=41.07 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=47.2
Q ss_pred hcCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 37 ELDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
+..++..|...+ +++|..|||+.+++ +...+.++++-|+..|++++... +.|.. -...+|+.++.+.
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~---~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERS---TEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEEC---SSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC---CCCCCeEEEEECHHHHHHH
Confidence 344566665543 35999999999999 78999999999999999998752 11111 1366677665443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=82.25 E-value=4.6 Score=36.03 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=69.7
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCe-EEEeeccc-ccccCCC-CCCceEeeCCCCC----CCCCccEEEEcchhccCC-
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIK-CTVLDLPH-VVPKVPD-TDNLKFIAGDMFQ----SIPPADAFFFKAIFHAFV- 266 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~~~- 266 (359)
..+++|+.||.|.+...+.+. +.+ +.++|+.. .++..+. .+... .+|+.+ .++.+|+++...-...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 468999999999999999887 454 66788843 4433221 11111 577743 245699999653322221
Q ss_pred --------chHHHHHHH---HHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHH
Q 018205 267 --------DEDCLKILK---RCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLF 335 (359)
Q Consensus 267 --------~~~~~~~L~---~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll 335 (359)
|+. -.++. ++.+.++| .+++.|.+..-... .+| ...+.+.+.|
T Consensus 87 ag~~~g~~d~r-~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~~------------------~~~--~~~~~i~~~l 140 (327)
T 2c7p_A 87 SGKQKGFEDSR-GTLFFDIARIVREKKP-----KVVFMENVKNFASH------------------DNG--NTLEVVKNTM 140 (327)
T ss_dssp TSCCCGGGSTT-SCHHHHHHHHHHHHCC-----SEEEEEEEGGGGTG------------------GGG--HHHHHHHHHH
T ss_pred hcccCCCcchh-hHHHHHHHHHHHhccC-----cEEEEeCcHHHHhc------------------ccc--HHHHHHHHHH
Confidence 211 11222 23344567 57888876532110 011 2356788888
Q ss_pred HHcCCceeEE
Q 018205 336 LDAGFSHFKI 345 (359)
Q Consensus 336 ~~aGf~~~~~ 345 (359)
++.||.+...
T Consensus 141 ~~~GY~v~~~ 150 (327)
T 2c7p_A 141 NELDYSFHAK 150 (327)
T ss_dssp HHTTBCCEEE
T ss_pred HhCCCEEEEE
Confidence 9999876443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=82.25 E-value=15 Score=28.24 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEeeCCCCC-----C--CCCccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMFQ-----S--IPPADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~-----~--~p~~D~i~~~~vl~~ 264 (359)
...+|+=+|+|. |......+... +.+++++|. ++.++.++....+.++.+|..+ . ..++|+|+..-
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~---- 92 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT---- 92 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS----
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe----
Confidence 467899999865 44333333333 568999998 4456655523345667677532 1 23589888643
Q ss_pred CCchHHHHHHHHHHHhccc
Q 018205 265 FVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p 283 (359)
+++.....+..+.+.+.+
T Consensus 93 -~~~~~~~~~~~~~~~~~~ 110 (155)
T 2g1u_A 93 -NDDSTNFFISMNARYMFN 110 (155)
T ss_dssp -SCHHHHHHHHHHHHHTSC
T ss_pred -CCcHHHHHHHHHHHHHCC
Confidence 223333344444444444
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=81.88 E-value=0.75 Score=33.38 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=34.3
Q ss_pred HHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHH
Q 018205 33 KCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLV 78 (359)
Q Consensus 33 ~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 78 (359)
..+.++||+..|.. +++|..|||+.+|+ ....+.|+=|+|.
T Consensus 43 ~l~~R~~l~~~L~~--ge~TQREIA~~lGi---S~stISRi~r~L~ 83 (101)
T 1jhg_A 43 ALGTRVRIIEELLR--GEMSQRELKNELGA---GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHHH--CCSCHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHHCC---ChhhhhHHHHHHH
Confidence 45677999999987 78999999999999 6788888766664
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=81.87 E-value=0.4 Score=36.10 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=37.3
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCC-CCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEIN-PTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~-~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|...|.+. ++.|..||++.++.. +-+...+.++|+-|+..|+|.+..
T Consensus 13 ~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3344555543 689999999999741 004688999999999999999875
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=81.61 E-value=1.3 Score=32.74 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..+ |..+||+.+|+ +...+++.|+.|...|+++...
T Consensus 31 ~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp CEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 6788999999999999998875
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=81.47 E-value=3.8 Score=31.26 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=50.3
Q ss_pred CCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEeeCCCCCC-------CCCccEEEEcchhccC
Q 018205 195 LGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMFQS-------IPPADAFFFKAIFHAF 265 (359)
Q Consensus 195 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~p~~D~i~~~~vl~~~ 265 (359)
..+|+=+|||. |......+... +.+++++|. ++.++.++. ..+.++.+|..++ ...+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----
Confidence 46899999875 44333333332 678999999 445554443 4678888988542 235888876321
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+.+...+.. ..+.+.| +..++.
T Consensus 81 ~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 1223333334 3444566 555544
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=81.41 E-value=0.83 Score=36.97 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=45.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhc--------CCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSAL--------EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++-|+..|.+ +|++.-||++.+ ++ +...+.+.|+.|+..|+++..............|++|+.++
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 4446667776 799999999998 45 67899999999999999987532100000123599999886
|
| >2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.72 E-value=0.67 Score=33.24 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=38.4
Q ss_pred cCcchhcccCC-CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHG-RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.-|+..+.++| .+++..+|..++++ ++..+.+.|+.|+..+|+....
T Consensus 40 ~lVy~~I~~aGn~GIw~kdL~~~tnL---~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 40 KLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCEEEec
Confidence 33455555432 57999999999999 6899999999999999999875
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=80.70 E-value=4.2 Score=30.51 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHC--CCCeEEEeecc-cccccCCCCCCceEeeCCCCC-------CCCCccEEEEcchhcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAF--PGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQ-------SIPPADAFFFKAIFHA 264 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~-------~~p~~D~i~~~~vl~~ 264 (359)
.++|+=+|+|. .+..+++.. .+.+++++|.. +.++.......+.++.+|..+ ....+|+|+..-
T Consensus 4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~---- 77 (140)
T 1lss_A 4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT---- 77 (140)
T ss_dssp -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC----
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee----
Confidence 46788888854 333333322 25689999984 343333222245667777632 134589888752
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+++.....+..+.+.+.+ +.+++
T Consensus 78 -~~~~~~~~~~~~~~~~~~----~~ii~ 100 (140)
T 1lss_A 78 -GKEEVNLMSSLLAKSYGI----NKTIA 100 (140)
T ss_dssp -SCHHHHHHHHHHHHHTTC----CCEEE
T ss_pred -CCchHHHHHHHHHHHcCC----CEEEE
Confidence 223333345555556776 45554
|
| >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A | Back alignment and structure |
|---|
Probab=80.59 E-value=2.2 Score=32.47 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..+ |..+||+.+|+ +...+++-|+.|...|+++...
T Consensus 25 G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3466 89999999999 6788999999999999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-89 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 1e-76 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 7e-64 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-39 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 4e-32 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 6e-29 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 1e-24 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 8e-24 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 5e-14 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 7e-13 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 4e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 4e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 5e-04 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 5e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.003 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 266 bits (681), Expect = 2e-89
Identities = 121/245 (49%), Positives = 173/245 (70%), Gaps = 2/245 (0%)
Query: 115 CLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174
CL+P+V + D H L +W + +L+ + G+ FWD++ KNP++N+ +N AM
Sbjct: 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDAM 60
Query: 175 ASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP 234
ASDS+L NL ++DC +F GL S+VDVGGGTG+ A+II E FP +KC V D P VV +
Sbjct: 61 ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS 120
Query: 235 DTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294
++NL ++ GDMF SIP ADA K I H + D+DCL+ILK+C+EA+ + G RGKV IID
Sbjct: 121 GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 180
Query: 295 IVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIKSL 354
+VI++KK++ Q+T+ KLL D+ M + G ER E+EW+KLF++AGF H+KI+P+ G SL
Sbjct: 181 MVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239
Query: 355 IEVYP 359
IE+YP
Sbjct: 240 IEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 234 bits (597), Expect = 1e-76
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 5/244 (2%)
Query: 116 LSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMA 175
L+ L + D ++ ++ + G +++M K+ N I+N++M
Sbjct: 4 LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSMV 62
Query: 176 SDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD 235
+ + F+G+ +LVDVGGG+G +I +P IK DLP V+ P
Sbjct: 63 DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122
Query: 236 TDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295
++ + GDMF S+P DA KA+ H + DE C++ L C +A+ GKVII++
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEF 179
Query: 296 VINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKIT-PVYGIKSL 354
++ E+ ++ ++ D LM + V G ERTEK++EKL +GFS F++ + +
Sbjct: 180 ILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 355 IEVY 358
+E Y
Sbjct: 240 MEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 201 bits (512), Expect = 7e-64
Identities = 84/243 (34%), Positives = 124/243 (51%), Gaps = 6/243 (2%)
Query: 115 CLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAM 174
+S + L D+V + + L D + A G ++Y +P FN ++N+ M
Sbjct: 4 SISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAY-GMTAFEYHGTDPRFNKVFNKGM 61
Query: 175 ASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP 234
+ S + + + F+GL SLVDVGGGTG+ I +P IK DLPHV+ P
Sbjct: 62 SDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP 121
Query: 235 DTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294
++ + GDMF SIP ADA F K I H + DE CLK LK C EA D GKVI+ +
Sbjct: 122 SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEA---LPDNGKVIVAE 178
Query: 295 IVINEKKEDAQLTEAKLLYDMLMMVAVRGS-ERTEKEWEKLFLDAGFSHFKITPVYGIKS 353
++ + + T+ + D++M+ G ERT+KE+E L AGF FK+
Sbjct: 179 CILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238
Query: 354 LIE 356
++E
Sbjct: 239 IME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 138 bits (348), Expect = 2e-39
Identities = 50/238 (21%), Positives = 85/238 (35%), Gaps = 21/238 (8%)
Query: 135 LSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQG 194
L R AY G FW+ ++ + ++ M+ D LA D +
Sbjct: 25 LLDVVRTGR-PAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81
Query: 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKV-------PDTDNLKFIAGD-M 246
+ ++DVGGG G I+ P ++ T+++L + D + GD
Sbjct: 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF 141
Query: 247 FQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306
AD + + DED L IL+ C A+ G+++++D E +
Sbjct: 142 KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDGADRF 198
Query: 307 TEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGIK-----SLIEVYP 359
L D+ M+ + G RT E L AG + S++E
Sbjct: 199 FST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 119 bits (297), Expect = 4e-32
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 22/238 (9%)
Query: 135 LSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLANLIVKDCQPIFQG 194
L R YE+ G F++ +A PD + ++ +A D +A +
Sbjct: 24 LPDAIRTGR-PTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTN 80
Query: 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPD--------TDNLKFIAGDM 246
+ ++DVGGG G FA I+ P + TVL++ V
Sbjct: 81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFF 140
Query: 247 FQSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL 306
ADA + + D D ++IL RC EA+ G+++I + +
Sbjct: 141 EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERDDLH---ENSF 194
Query: 307 TEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYG-----IKSLIEVYP 359
E D+ M+V + G+ RT ++W+ L AG ++ + SL+ + P
Sbjct: 195 NEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 105 bits (264), Expect = 6e-29
Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 8 GAKEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKA 67
E+F+AQA L+K IY ++ S SLK AVE++IP +I HG+PI+L LVS L++ +K
Sbjct: 2 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKI 61
Query: 68 DGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111
+ +LMR L H GFF +EEE+YALT+ S+L ++
Sbjct: 62 GNVRRLMRYLAHNGFF------EIITKEEESYALTVASELLVRG 99
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 94.9 bits (236), Expect = 1e-24
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVSALEI---NPTKA 67
A + N V L A++L++ E+I K P ++ ++ S L +
Sbjct: 5 SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLP 64
Query: 68 DGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDK 112
+ L +++RLL ++ E Y L++ K + D+
Sbjct: 65 NRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 92.2 bits (229), Expect = 8e-24
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEI---NPTKADGL 70
EA ++ V LK A+ELD+ E+I K G + + A ++ NP L
Sbjct: 6 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVML 65
Query: 71 FKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKDK 112
+++RLL + + + + Y L +K +K++
Sbjct: 66 DRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 64.8 bits (158), Expect = 5e-14
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKL 73
+ L K + N V+ +L+ A L + + + TL L + +P L +L
Sbjct: 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHP---QALSRL 60
Query: 74 MRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105
+R L G E++ L T
Sbjct: 61 VRHLTVVGVLE--------GGEKQGRPLRPTR 84
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 61.4 bits (149), Expect = 7e-13
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 13/95 (13%)
Query: 17 AHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRL 76
+ + + ++ A L + + H T+ L + + P +L+R
Sbjct: 3 LRTLIRLGSLHTPMVVRTAATLRLVD--HILAGARTVKALAARTDTRPEALL---RLIRH 57
Query: 77 LVHTGFFSTANVQSAQQQEEEAYALTLTSKLFLKD 111
LV G + + T +L D
Sbjct: 58 LVAIGLLE--------EDAPGEFVPTEVGELLADD 84
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (98), Expect = 4e-05
Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 21/162 (12%)
Query: 198 LVDVGGGTGSFARIISEAFPGIKCTVLDL----------PHVVPKVPDTDNLKFIAGDMF 247
++D+G G G A S +C +D V + + A +
Sbjct: 20 VLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 248 QSIPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLT 307
D + H F D K ++ + G+ +++D E +
Sbjct: 78 FPDDSFDIITCRYAAHHF--SDVRKAVREVARVLK---QDGRFLLVDHYAPEDPVLDEF- 131
Query: 308 EAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVY 349
+ + + E + EW+ +F ++ I
Sbjct: 132 ---VNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN 170
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 16/177 (9%)
Query: 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKF 241
+V+ P F+ G+L+++G G F + E F T ++
Sbjct: 9 PFMVRAFTPFFRP-GNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDG 65
Query: 242 IAGDMFQSIPPADAFFFKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIIIDIVIN 298
I + + I V E D + +LKR + + G G++ + + N
Sbjct: 66 ITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEG--GRLFL--VCPN 121
Query: 299 EKKEDAQLTEAKLLYDMLMMVAVRGSER------TEKEWEKLFLDAGFSHFKITPVY 349
Q+ + V E+ AG + ++
Sbjct: 122 ANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGIF 178
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 38.9 bits (89), Expect = 5e-04
Identities = 19/162 (11%), Positives = 41/162 (25%), Gaps = 21/162 (12%)
Query: 198 LVDVGGGTGSFARIISEAFPGIKCTVLDL--------PHVVPKVPDTDNLKFIAGDMFQS 249
++DV G G A + K DL +
Sbjct: 19 VLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 250 IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEA 309
A + + + G+++++D E
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLK---KGGQLLLVDNSAPEND------AF 127
Query: 310 KLLYDMLMMVAVRGSER--TEKEWEKLFLDAGFSHFKITPVY 349
+ Y+ + R + +W K+ +AGF ++ +
Sbjct: 128 DVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH 169
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 38.8 bits (89), Expect = 5e-04
Identities = 27/224 (12%), Positives = 63/224 (28%), Gaps = 24/224 (10%)
Query: 141 DNELSAYETANDGTVFWDYMAKNPD-FNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLV 199
D E Y A + +W + + D + + + G +
Sbjct: 44 DPEKGWYGKALE---YWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPG--HGTSRAL 98
Query: 200 DVGGGTGSFARIISEAFPGIKCTVLDLPHVV----PKVPDTDNLKFIAGDMFQSIPPADA 255
D G G G + + + + H++ ++ KFI M + P +
Sbjct: 99 DCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158
Query: 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM 315
+ I + +K + + G + + + ++ L
Sbjct: 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLT--- 215
Query: 316 LMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYGI-KSLIEVY 358
R++ +++LF ++G K L +
Sbjct: 216 ----------RSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLK 249
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.1 bits (87), Expect = 0.001
Identities = 30/229 (13%), Positives = 62/229 (27%), Gaps = 37/229 (16%)
Query: 165 DFNSIYNQAMASD---SQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKC 221
F IY++ + +D + ++ I++ C +D+ GTG+ + F
Sbjct: 5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWA 64
Query: 222 TVLDLPHVVPKVPDTDNLK----FIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKILKRC 277
L + + D+ + LK+
Sbjct: 65 VDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKY 124
Query: 278 REAIASRGDRGKVIIIDIV-------------INEKKEDAQLTEAKLLYDMLMMVAVRGS 324
+A+++ G V I DI N ++ D L+ + +
Sbjct: 125 FKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFF 184
Query: 325 ER-----------------TEKEWEKLFLDAGFSHFKITPVYGIKSLIE 356
R E++ EK + Y K + +
Sbjct: 185 VRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEK 233
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.003
Identities = 15/148 (10%), Positives = 35/148 (23%), Gaps = 11/148 (7%)
Query: 198 LVDVGGGTGSFARIISEAFP----GIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPPA 253
++D+G G+G + GI + L + + + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLY 313
S G ++I + + ++ +A +
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 156
Query: 314 DMLMMVAVRGSERTEKEWEKLFLDAGFS 341
T F D G+
Sbjct: 157 STSDF-------LTLPGLVGAFDDLGYD 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.76 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.74 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.74 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.68 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.67 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.65 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.64 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.63 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.62 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.6 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.58 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.57 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.52 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.49 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.49 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.49 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.48 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.46 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.43 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.41 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.4 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.38 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.38 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.38 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.26 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.25 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.22 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.22 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.21 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.21 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.19 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.19 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.15 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.15 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.13 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.11 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.04 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.98 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.98 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.98 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.92 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.9 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.9 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.88 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.73 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.67 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.67 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.66 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.64 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.41 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.33 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.31 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.29 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.23 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.22 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.22 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.21 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.21 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.2 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.15 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.1 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.09 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.08 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.08 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.05 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.03 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.0 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.0 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.96 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.96 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.93 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.92 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.87 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.83 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.82 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.69 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.65 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.58 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.58 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.53 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.52 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.48 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.28 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.17 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.0 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.9 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.87 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.56 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.44 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.41 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 96.35 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 96.25 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 96.22 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 96.19 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.12 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 95.73 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.7 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.62 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.52 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.46 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.37 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 95.34 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 95.07 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.95 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 94.87 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 94.77 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 94.77 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 94.76 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 94.59 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 94.26 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.14 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 93.99 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 93.89 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 93.86 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 93.5 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.4 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 93.08 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.06 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 92.81 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.8 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.72 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 92.71 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 92.54 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.51 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 92.42 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 92.31 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.22 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 92.17 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 92.08 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 91.97 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 91.87 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 91.76 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 91.75 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 91.7 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.3 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 91.23 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 91.09 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 90.91 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 90.79 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.77 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.74 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.49 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 90.4 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 89.81 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 89.6 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.56 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.86 | |
| d1cf7a_ | 67 | Cell cycle transcription factor E2F-4 {Human (Homo | 88.8 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 88.79 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.6 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 88.08 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.0 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 87.58 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 87.48 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 87.02 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 86.91 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 86.35 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 85.82 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 85.42 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 85.12 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 84.98 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.68 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.58 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 84.42 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 84.42 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 84.24 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 84.07 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 83.97 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 83.72 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 83.27 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.19 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 82.99 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 82.92 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.9 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 82.86 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 82.67 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 82.65 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 82.39 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 81.52 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 81.46 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.24 | |
| d1y0ua_ | 89 | Putative arsenical resistance operon repressor AF0 | 81.22 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 80.18 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.5e-42 Score=302.37 Aligned_cols=240 Identities=30% Similarity=0.573 Sum_probs=205.1
Q ss_pred ChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccch-HHHHHhcccccC
Q 018205 115 CLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQ 193 (359)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~ 193 (359)
++++++.+++++.++++|.+|.++++++.+++|+..| |.++|+|+.++|+..+.|+.+|...+... +.+++.++ .++
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~-G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~ 80 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFE 80 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTT
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhc-CCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc
Confidence 6788888888888999999999999999888899999 99999999999999999999999888777 88888887 468
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKI 273 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~ 273 (359)
+..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+++++.++
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~i 160 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEF 160 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHH
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHH
Confidence 88999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe-CCce
Q 018205 274 LKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV-YGIK 352 (359)
Q Consensus 274 L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~ 352 (359)
|++++++|+| ||+++|+|.+.++.............+|+.|+...+|+.||.+||.++|++|||+.+++.+. .+..
T Consensus 161 L~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~ 237 (244)
T d1fp1d2 161 LSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 237 (244)
T ss_dssp HHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTE
T ss_pred HHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCE
Confidence 9999999999 99999999998876544322234456788888778999999999999999999999999866 5788
Q ss_pred eEEEEeC
Q 018205 353 SLIEVYP 359 (359)
Q Consensus 353 ~vi~~~~ 359 (359)
+|||++|
T Consensus 238 ~viE~~K 244 (244)
T d1fp1d2 238 GVMEFYK 244 (244)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999987
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=7.7e-42 Score=298.10 Aligned_cols=239 Identities=49% Similarity=0.948 Sum_probs=212.5
Q ss_pred ChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccch-HHHHHhcccccC
Q 018205 115 CLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQ 193 (359)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~ 193 (359)
++..++.++.++.++.+|..|.++++++.+++|+..+ |.++|+|+.++|+..+.|+.+|...+... ..+.. +.+.++
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~-G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~ 79 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTL-GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFD 79 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHH-SSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhh-CCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hccccc
Confidence 4566777777888889999999999999889999999 99999999999999999999999887766 44433 323467
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHHH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLKI 273 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~~ 273 (359)
+..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|++|+|+++++||+|+|+++.++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i 159 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI 159 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence 88999999999999999999999999999999999999999899999999999998899999999999999999999999
Q ss_pred HHHHHHhcccCCCC---cEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCC
Q 018205 274 LKRCREAIASRGDR---GKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYG 350 (359)
Q Consensus 274 L~~~~~~L~p~~~g---G~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~ 350 (359)
|++++++|+| | |+++|+|...++.............+++.|+. .+|+.||.++|+++|++|||+.+++++.++
T Consensus 160 L~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~ 235 (244)
T d1fp2a2 160 LKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTG 235 (244)
T ss_dssp HHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence 9999999999 7 88999999998776554333344567777765 588999999999999999999999999999
Q ss_pred ceeEEEEeC
Q 018205 351 IKSLIEVYP 359 (359)
Q Consensus 351 ~~~vi~~~~ 359 (359)
..++||++|
T Consensus 236 ~~svIE~~p 244 (244)
T d1fp2a2 236 FLSLIEIYP 244 (244)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.9e-39 Score=283.68 Aligned_cols=238 Identities=35% Similarity=0.597 Sum_probs=213.2
Q ss_pred CChhhHHhhhcCcccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccch-HHHHHhccccc
Q 018205 114 YCLSPVVLTLTDQVFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIF 192 (359)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~ 192 (359)
.++++++.+..++.+++.|.+|.+++|+|+ ++|+..+ |.++|+|+.++|+..+.|+.+|...+... ..++..+++ +
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~-G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~ 79 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-F 79 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHH-SSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-T
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhc-CCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-c
Confidence 377888888877778999999999999998 5899999 99999999999999999999999887766 888888872 3
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHH
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLK 272 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~ 272 (359)
++..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|++++++++|+|+++++.+
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~ 159 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK 159 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhc-CCcccCHHHHHHHHHHcCCceeEEEEeCCc
Q 018205 273 ILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAV-RGSERTEKEWEKLFLDAGFSHFKITPVYGI 351 (359)
Q Consensus 273 ~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~t~~~~~~ll~~aGf~~~~~~~~~~~ 351 (359)
+|++++++|+| ||+++|.|...++.............+|+.|+... +|+.||.++|+++|++|||+.+++.+....
T Consensus 160 iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~ 236 (243)
T d1kyza2 160 FLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFN 236 (243)
T ss_dssp HHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETT
T ss_pred HHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 99999999999 99999999998766544322233456788887764 789999999999999999999999999888
Q ss_pred eeEEEE
Q 018205 352 KSLIEV 357 (359)
Q Consensus 352 ~~vi~~ 357 (359)
.+|||.
T Consensus 237 ~~viE~ 242 (243)
T d1kyza2 237 TYIMEF 242 (243)
T ss_dssp EEEEEE
T ss_pred CEEEEe
Confidence 999985
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=2.3e-37 Score=272.75 Aligned_cols=238 Identities=22% Similarity=0.323 Sum_probs=201.2
Q ss_pred CCChhhHHhhhcCc-ccccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccch-HHHHHhccc
Q 018205 113 PYCLSPVVLTLTDQ-VFVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQP 190 (359)
Q Consensus 113 ~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~ 190 (359)
|.++++|+.+.... ....+|.+|.+++|+|. +.|...+ |.++|+|+.++|+..+.|+++|...+... +.+++.++
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~-G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d- 78 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD- 78 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHH-SSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhh-CCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-
Confidence 55677777665321 22347899999999998 5788889 99999999999999999999999988877 88999998
Q ss_pred ccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-------CCCCceEeeCCCCCCCC-CccEEEEcchh
Q 018205 191 IFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQSIP-PADAFFFKAIF 262 (359)
Q Consensus 191 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~~~p-~~D~i~~~~vl 262 (359)
+++..+|||||||+|.++..+++++|+++++++|+|++++.++ ..++++++.+|+++++| +||+|+++++|
T Consensus 79 -~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vL 157 (256)
T d1qzza2 79 -WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL 157 (256)
T ss_dssp -CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCG
T ss_pred -CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccc
Confidence 8888999999999999999999999999999999988776655 26899999999988776 59999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
|+|+++++.++|++++++|+| ||+++|.|....+..... ......+++.|+...+|+.||.++|.++|++|||++
T Consensus 158 h~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~ 232 (256)
T d1qzza2 158 LNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 232 (256)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred cccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCccc--HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCce
Confidence 999999999999999999999 999999998765443221 134456788888888999999999999999999999
Q ss_pred eEEEEeCC-----ceeEEEEeC
Q 018205 343 FKITPVYG-----IKSLIEVYP 359 (359)
Q Consensus 343 ~~~~~~~~-----~~~vi~~~~ 359 (359)
+++.+.+. ..+|+|+.|
T Consensus 233 ~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 233 ASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEEECCSSCSSCEEEEEEEE
T ss_pred eEEEEeCCcCccCceEEEEEEe
Confidence 99988743 468999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=4.4e-36 Score=264.47 Aligned_cols=222 Identities=26% Similarity=0.461 Sum_probs=192.8
Q ss_pred cccchhhhhHhhhcCCCchhhhhcCCCChhhhcccCccHHHHHHHHHhhcccch-HHHHHhcccccCCCCeEEEeCCCcc
Q 018205 128 FVNPCHFLSRWFRDNELSAYETANDGTVFWDYMAKNPDFNSIYNQAMASDSQLA-NLIVKDCQPIFQGLGSLVDVGGGTG 206 (359)
Q Consensus 128 ~~~~~~~L~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G 206 (359)
...+|.+|++++|+|. ++|+..+ |.++|+++.++|+..+.|+.+|...+... +.+++.++ +++..+|||||||+|
T Consensus 17 ~~~~~~~L~~~vr~G~-~~~~~~~-G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G 92 (253)
T d1tw3a2 17 ADISFTRLPDAIRTGR-PTYESIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKG 92 (253)
T ss_dssp HGGGGGGHHHHHHHCC-CCHHHHH-SSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTS
T ss_pred ccccHHHHHHHHHhCC-chhhhcc-CCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCC
Confidence 3567899999999998 5788899 99999999999999999999999888777 89999998 888899999999999
Q ss_pred hHHHHHHHHCCCCeEEEeecccccccCC-------CCCCceEeeCCCCCCCC-CccEEEEcchhccCCchHHHHHHHHHH
Q 018205 207 SFARIISEAFPGIKCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQSIP-PADAFFFKAIFHAFVDEDCLKILKRCR 278 (359)
Q Consensus 207 ~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~ 278 (359)
.++..+++++|+++++++|+|++++.++ ..++++++.+|++++.| +||+|+++++||+|+++++.++|++++
T Consensus 93 ~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~ 172 (253)
T d1tw3a2 93 GFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCA 172 (253)
T ss_dssp HHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHH
Confidence 9999999999999999999988777665 25799999999988665 599999999999999999999999999
Q ss_pred HhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEeCC-----cee
Q 018205 279 EAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPVYG-----IKS 353 (359)
Q Consensus 279 ~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~~~-----~~~ 353 (359)
++|+| ||+++|.|.......... .....+++.|+...+|+.||.++|.++|+++||++++++.++. ..+
T Consensus 173 ~~LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~ 246 (253)
T d1tw3a2 173 EALEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLS 246 (253)
T ss_dssp HTEEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEE
T ss_pred HhcCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEE
Confidence 99999 999999997665443322 2334567888877889999999999999999999999887643 356
Q ss_pred EEEEeC
Q 018205 354 LIEVYP 359 (359)
Q Consensus 354 vi~~~~ 359 (359)
++++.|
T Consensus 247 li~~~P 252 (253)
T d1tw3a2 247 LLVLAP 252 (253)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 777765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=1.6e-20 Score=161.26 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=121.4
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHH--CCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEA--FPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p~~D~i~~~~ 260 (359)
.++..+|||||||+|..+..+++. .|+.+++|+|+++ |++.|++ ..++.+..+|+.+ +.+.+|+|+++.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 356789999999999999999986 4789999999965 9998862 4577888888855 445699999999
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh--------------cCCccc
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA--------------VRGSER 326 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~ 326 (359)
++|+++.++..++|++++++|+| ||.+++.+...++....... .......+..... ..-..+
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 99999988888999999999999 99999999887665432100 0001111100000 001246
Q ss_pred CHHHHHHHHHHcCCceeEEEEeCCceeEEEEeC
Q 018205 327 TEKEWEKLFLDAGFSHFKITPVYGIKSLIEVYP 359 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 359 (359)
+.+++.++|+++||+.++++.....+..+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 899999999999999988875555555566654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.81 E-value=9.9e-20 Score=156.77 Aligned_cols=152 Identities=15% Similarity=0.291 Sum_probs=116.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC-CCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ-SIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~-~~p-- 251 (359)
..+++..+ +.++.+|||||||+|.++..+++.. .+++++|+++ +++.|+ ..++++++++|+.+ +++
T Consensus 5 ~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 5 AKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 35566666 7788999999999999999999885 5799999965 888775 35789999999965 444
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh--hhhcCCcccCHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM--MVAVRGSERTEK 329 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~t~~ 329 (359)
.||+|++.+++||++|. .++|++++++|+| ||.+++.+...+..... ...++... ........++.+
T Consensus 81 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 149 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPENDAF------DVFYNYVEKERDYSHHRAWKKS 149 (231)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCSSHHH------HHHHHHHHHHHCTTCCCCCBHH
T ss_pred ccccccccccccccCCH--HHHHHHHHHhcCC---CcEEEEEeCCCCCCHHH------HHHHHHHHhhcccCcccCCCHH
Confidence 49999999999999876 4599999999999 99999998876654211 11111111 111233567899
Q ss_pred HHHHHHHHcCCceeEEEEe
Q 018205 330 EWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 330 ~~~~ll~~aGf~~~~~~~~ 348 (359)
+|.++|+++||+++++...
T Consensus 150 ~~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 150 DWLKMLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEe
Confidence 9999999999998876543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=5.6e-19 Score=156.81 Aligned_cols=152 Identities=17% Similarity=0.301 Sum_probs=116.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCC-CCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQ-SIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~-~~p- 251 (359)
..+....+ +++..+|||||||+|.++..+++++ +++++++|++. +++.|++ .++++++++|+.+ ++|
T Consensus 57 ~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 57 SELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 34444445 6788999999999999999999876 67999999955 8877762 5789999999966 445
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.||+|++..++||+++. .++|++++++|+| ||.+++.+.......... ......+.. ......+.++
T Consensus 134 ~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~s~~~ 201 (282)
T d2o57a1 134 NSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGL 201 (282)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHH
T ss_pred cccchhhccchhhhccCH--HHHHHHHHHhcCC---CcEEEEEEeecCCCCchh---HHHHHHHHh----ccCCCCCHHH
Confidence 39999999999999876 4699999999999 999999988876554322 111111111 1123458899
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+.++++++||+.+.+...
T Consensus 202 ~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 202 YRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHcCCceEEEEEC
Confidence 999999999998887754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=4.2e-19 Score=154.90 Aligned_cols=148 Identities=17% Similarity=0.265 Sum_probs=116.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCC--Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIP--PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p--~~ 253 (359)
..+++.++ ..+..+|||+|||+|.++..|+.++.+ +++++|++. +++.|+ ..+++++.++|+.+ +++ .|
T Consensus 83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence 45666666 567789999999999999998877644 899999965 888876 24568999999854 333 39
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++.+++||+++++..++|++++++|+| ||.++|.+......... .+. ..+...|+.++|.+
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~ 223 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHH
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHH
Confidence 999999999999999888999999999999 89999988765543211 111 12234679999999
Q ss_pred HHHHcCCceeEEEEe
Q 018205 334 LFLDAGFSHFKITPV 348 (359)
Q Consensus 334 ll~~aGf~~~~~~~~ 348 (359)
+|+++||++++....
T Consensus 224 l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 224 LFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHTCCEEEEEEC
T ss_pred HHHHcCCEEEEEEee
Confidence 999999999887664
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.8e-18 Score=149.25 Aligned_cols=151 Identities=19% Similarity=0.316 Sum_probs=115.4
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~ 252 (359)
-+++..+ +++..+|||||||+|.++..++++. .+++++|+++ +++.|++ .+++.++++|+.+ +++ .
T Consensus 7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 4556676 7888999999999999999999985 4799999965 8888762 4689999999965 444 3
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhh--hhhcCCcccCHHH
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLM--MVAVRGSERTEKE 330 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~t~~~ 330 (359)
||+|+|.+++|++++. .++|++++++|+| ||.+++.+...+.... ...+++... ......+.++..+
T Consensus 83 fD~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPEDPV------LDEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred cceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEEEcCCCCCHH------HHHHHHHHHhhCCCcccccCCHHH
Confidence 9999999999999776 5699999999999 9999998876554321 111111111 1112345678999
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
|..+++++||.+..+...
T Consensus 152 ~~~~~~~~gf~~~~~~~~ 169 (234)
T d1xxla_ 152 WQAMFSANQLAYQDIQKW 169 (234)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEEe
Confidence 999999999987766543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=7.8e-19 Score=150.29 Aligned_cols=139 Identities=14% Similarity=0.240 Sum_probs=111.5
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
..+..+|||||||+|.++..++++.+ .+++++|+++ +++.|++ ..+++++++|+.+ +.+ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 34568999999999999999877764 3899999965 9887762 3467999999965 333 4999999999
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCc
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFS 341 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~ 341 (359)
+||+++++..++|++++++|+| ||.+++.+....+.... +. ......++.++|.++|+++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~----------~~----~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVIL----------DD----VDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEE----------ET----TTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEEEccccccccc----------cc----CCceeeCCHHHHHHHHHHcCCE
Confidence 9999998888999999999999 89999998776554211 00 1223457899999999999999
Q ss_pred eeEEEEe
Q 018205 342 HFKITPV 348 (359)
Q Consensus 342 ~~~~~~~ 348 (359)
+++....
T Consensus 200 ii~~~~q 206 (222)
T d2ex4a1 200 LLAEERQ 206 (222)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9888765
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=3.3e-18 Score=144.78 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=102.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEEcchhccCCchH
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVDED 269 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~~~ 269 (359)
+..+|||||||+|.++..+. +++|+|++. +++.|++ .+++++++|+.+ +.+ .||+|++.++|||+++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~- 107 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 107 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc-
Confidence 35689999999999988773 368999955 8888774 368999999965 444 49999999999999775
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 270 CLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 270 ~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.++|++++++|+| ||.+++.++...+.. ...............+...+|.+++.++|+++||+.+++...
T Consensus 108 -~~~l~~~~~~L~p---gG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~ 177 (208)
T d1vlma_ 108 -ERALKEAYRILKK---GGYLIVGIVDRESFL-----GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 177 (208)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEECSSSHH-----HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -ccchhhhhhcCCC---CceEEEEecCCcchh-----HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence 5699999999999 899998886554321 011000000011112345689999999999999998887764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.9e-18 Score=147.45 Aligned_cols=152 Identities=12% Similarity=0.097 Sum_probs=116.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
..+.+.+. +.+..+|||||||+|.++..++++++ ++++|+|++. +++.|++ .++++++.+|+.+..+
T Consensus 23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 35666666 77889999999999999999998874 7999999965 8877652 5689999999966433
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHH
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEW 331 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~ 331 (359)
.||+|++..+++++++. .++|++++++|+| ||++++.++......... ......... ......+..++
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~ 167 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQACGVS----STSDFLTLPGL 167 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTTTCS----CGGGSCCHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCc---CcEEEEEeccccCCCChH---HHHHHhccC----CCcccCCHHHH
Confidence 49999999999999876 4599999999999 999999988765544322 111111110 11235688999
Q ss_pred HHHHHHcCCceeEEEEe
Q 018205 332 EKLFLDAGFSHFKITPV 348 (359)
Q Consensus 332 ~~ll~~aGf~~~~~~~~ 348 (359)
..+++++||.++.....
T Consensus 168 ~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999998876544
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.74 E-value=1.1e-18 Score=128.37 Aligned_cols=97 Identities=47% Similarity=0.823 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccc
Q 018205 10 KEMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQ 89 (359)
Q Consensus 10 ~~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~ 89 (359)
.+...++..|++++.||+.+++|++|+++||||+|.+.|+|+|++|||+++++++.+.+.|.|+||+|++.|+|++...
T Consensus 4 ~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~- 82 (101)
T d1fp2a1 4 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK- 82 (101)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC-
Confidence 4566789999999999999999999999999999987668999999999999976666889999999999999986532
Q ss_pred ccccCccceEeccccccccccCC
Q 018205 90 SAQQQEEEAYALTLTSKLFLKDK 112 (359)
Q Consensus 90 ~~~~~~~~~~~~t~~~~~l~~~~ 112 (359)
++++|.+|+.+++|++++
T Consensus 83 -----~~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 83 -----EEESYALTVASELLVRGS 100 (101)
T ss_dssp -----SSEEEEECHHHHTTSTTS
T ss_pred -----CCCeEecCHHHHHhhcCC
Confidence 147899999999888765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=1.6e-16 Score=139.88 Aligned_cols=161 Identities=18% Similarity=0.230 Sum_probs=120.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~~p~~ 253 (359)
+.+++++. +.++.+|||||||.|.++..+++++ +++++++|++. +++.|+ ...++.+...|..+....|
T Consensus 42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 46777777 7889999999999999999998887 56999999965 776655 2467788888874333359
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcch----HHH-HHHHhhhhhhh-hhcCCcccC
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDA----QLT-EAKLLYDMLMM-VAVRGSERT 327 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~----~~~-~~~~~~~~~~~-~~~~g~~~t 327 (359)
|.|++..+++|++++....++++++++|+| ||+++|.+.......... ... ......++... ...+|...|
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 999999999999988778899999999999 999999886654432110 000 01111122111 124677889
Q ss_pred HHHHHHHHHHcCCceeEEEEe
Q 018205 328 EKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 328 ~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.+++.+.++++||.+.++...
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEEC
T ss_pred hHhhhhhHHhhccccceeeec
Confidence 999999999999999888765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.67 E-value=2.1e-16 Score=135.21 Aligned_cols=143 Identities=15% Similarity=0.238 Sum_probs=103.7
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC--CCCCceEeeCCCCC-CCC-CccEEEEcchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP--DTDNLKFIAGDMFQ-SIP-PADAFFFKAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--~~~~v~~~~~d~~~-~~p-~~D~i~~~~vl~~~~~ 267 (359)
.++.+|||||||+|.++..+++.. .+++++|+++ +++.|+ ...+++++.+|+.+ +.+ .||+|++.++|||+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence 456799999999999999998874 5799999965 888887 35679999999854 233 4999999999999987
Q ss_pred hHHHHHHHHHH-HhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhh---------hhhhhcCCcccCHHHHHHHHHH
Q 018205 268 EDCLKILKRCR-EAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDM---------LMMVAVRGSERTEKEWEKLFLD 337 (359)
Q Consensus 268 ~~~~~~L~~~~-~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~t~~~~~~ll~~ 337 (359)
+ ..+|++++ ++|+| ||.+++..+....... ........ .-........++.+++++++.+
T Consensus 97 ~--~~~l~~i~~~~Lk~---gG~l~i~~pn~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~ 166 (225)
T d2p7ia1 97 P--VALLKRINDDWLAE---GGRLFLVCPNANAVSR-----QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 166 (225)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEEEECTTCHHH-----HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCC---CceEEEEeCCcccHHH-----HHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence 6 45899998 68999 8888887654332110 00000000 0000123346799999999999
Q ss_pred cCCceeEEEE
Q 018205 338 AGFSHFKITP 347 (359)
Q Consensus 338 aGf~~~~~~~ 347 (359)
+||++++...
T Consensus 167 ~Gf~i~~~~~ 176 (225)
T d2p7ia1 167 AGLQVTYRSG 176 (225)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 9999887653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.65 E-value=2.6e-16 Score=139.08 Aligned_cols=150 Identities=15% Similarity=0.263 Sum_probs=106.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~~vl 262 (359)
+.++.+|||||||+|.++..+++.+| +.+++|+|+++ +++.|++ ..++++..+|+.+ +++ .||+|++++++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 56789999999999999999999887 47899999965 8887762 3478999999965 344 49999999999
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCC--------CcchH---HHHHHHhhhhhhhhhcCCcc-cCHHH
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEK--------KEDAQ---LTEAKLLYDMLMMVAVRGSE-RTEKE 330 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~g~~-~t~~~ 330 (359)
||+++++ ++|++++++|+| ||.+++.++..... ..... .......+.... ...+.. ....+
T Consensus 105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~ 177 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDT--QRNGKDGNIGMK 177 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHH--HTTCCCTTGGGT
T ss_pred hcCCCHH--HHHHHHHHHcCc---CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHH--HHcCCCCCHHHH
Confidence 9998774 599999999999 99999998652111 00000 000111111111 112221 12246
Q ss_pred HHHHHHHcCCceeEEEEe
Q 018205 331 WEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~~ 348 (359)
+..+|+++||+.+++...
T Consensus 178 l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 178 IPIYLSELGVKNIECRVS 195 (281)
T ss_dssp HHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHcCCeEEEEEEe
Confidence 778899999999887654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=1.1e-15 Score=134.60 Aligned_cols=161 Identities=15% Similarity=0.160 Sum_probs=121.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCCCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQSIP-P 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~~p-~ 252 (359)
+.+++++. +.+..+|||||||.|.++..+++++ +++++|++++. .++.|+ ..+++++..+|+. .+| .
T Consensus 52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~-~~~~~ 127 (285)
T d1kpga_ 52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEP 127 (285)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCC
T ss_pred HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh-ccccc
Confidence 46677777 7888999999999999999999998 68999999964 555443 3689999999984 334 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc-----hHHHHHHHhhhhhh-hhhcCCccc
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED-----AQLTEAKLLYDMLM-MVAVRGSER 326 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~g~~~ 326 (359)
||.|++..+++|+.......++++++++|+| ||++++.+......... +.........++.. ....+|...
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 9999999999999877667899999999999 99999988775432110 00000111111111 112467788
Q ss_pred CHHHHHHHHHHcCCceeEEEEeC
Q 018205 327 TEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
+.+++.++++++||++.++...+
T Consensus 205 sl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEECH
T ss_pred ChhhHHHHHHHhchhhcccccch
Confidence 99999999999999999987763
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.8e-15 Score=133.49 Aligned_cols=162 Identities=16% Similarity=0.200 Sum_probs=121.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCCCCCc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQSIPPA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~~p~~ 253 (359)
+.+++++. +.++.+|||||||.|.++..+++++ +++++|++++. .++.++ ...++.+...|+...-..|
T Consensus 51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 46777777 7889999999999999999999988 46999999965 655544 2578888888884333459
Q ss_pred cEEEEcchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHH-----HHHHHhhhhhhh-hh
Q 018205 254 DAFFFKAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQL-----TEAKLLYDMLMM-VA 320 (359)
Q Consensus 254 D~i~~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~ 320 (359)
|.|++..+++|+++ +....++++++++|+| ||++++.....++....... .......++... ..
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiF 204 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 204 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhc
Confidence 99999999999976 3356799999999999 99999988886554211000 000011111111 12
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEeC
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPVY 349 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~~ 349 (359)
.+|...|..++..+++++||++.++...+
T Consensus 205 pgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 205 PGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCHHHHHhhhcccccccceeeecc
Confidence 46788899999999999999999987764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.62 E-value=1.4e-15 Score=131.77 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-CccEEEEc-chhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PADAFFFK-AIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~D~i~~~-~vl~ 263 (359)
.++.+|||||||+|.++..++++. .+++|+|+++ |++.|++ ..+++++++|+.+ +.+ .||+|+|. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 446899999999999999999984 5799999965 9988762 4579999999965 334 49999875 6777
Q ss_pred cCC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 264 AFV-DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 264 ~~~-~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
++. .++..++|++++++|+| ||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 774 55778899999999999 776664
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.62 E-value=2.6e-15 Score=125.66 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=101.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC-CC-Cc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS-IP-PA 253 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~-~p-~~ 253 (359)
.++.... ...+.+|||||||+|..+..++++ +.+++++|+++ +++.++ ..+++.+...|+.+. .+ .|
T Consensus 21 ~~~~~~~--~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f 96 (198)
T d2i6ga1 21 DVLAAAK--VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY 96 (198)
T ss_dssp HHHHHHT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred HHHHHcc--cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence 4555444 334579999999999999999998 56899999965 888665 246789999998653 22 49
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHH
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEK 333 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ 333 (359)
|+|++..++|++++++..++|++++++|+| ||.+++........... .. .....++..++.+
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~~~~~~~--------~~-------~~~~~~~~~el~~ 158 (198)
T d2i6ga1 97 DFILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMDTPDFPC--------TV-------GFPFAFKEGELRR 158 (198)
T ss_dssp EEEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC------------------------CCCCBCTTHHHH
T ss_pred cEEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecCCccCCC--------CC-------CCCCccCHHHHHH
Confidence 999999999999988888999999999999 88888876553322110 00 0112345566777
Q ss_pred HHHHcCCceeEEE
Q 018205 334 LFLDAGFSHFKIT 346 (359)
Q Consensus 334 ll~~aGf~~~~~~ 346 (359)
+| +||.++...
T Consensus 159 ~~--~~~~i~~~~ 169 (198)
T d2i6ga1 159 YY--EGWDMLKYN 169 (198)
T ss_dssp HT--TTSEEEEEE
T ss_pred Hh--CCCeEEEee
Confidence 76 578776544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=8.3e-16 Score=131.09 Aligned_cols=99 Identities=22% Similarity=0.397 Sum_probs=84.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
++..+|||||||+|.++..+++. +.+++|+|++. +++.|+ ....+.++.+|+.+ +++ .||+|++.+++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 45689999999999999999986 67899999965 998876 24678899999865 444 499999999999
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
++++++..++|+++.++|+| ||.+++....
T Consensus 114 ~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence 99888888999999999999 8998887654
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.60 E-value=7.9e-16 Score=109.65 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceE
Q 018205 20 FKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAY 99 (359)
Q Consensus 20 ~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~ 99 (359)
+..+.+|+.+++|++|+++||||.|.. +|+|++|||+++|+ +++.+.|+||+|++.|++++.+ ++.|
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~---~~~~l~rlLr~l~a~gl~~e~~--------~~~y 72 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA--------PGEF 72 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE--------TTEE
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCc---ChhHHHHHHHHHHHCCCeEecC--------CCeE
Confidence 445688999999999999999999986 89999999999999 7899999999999999999876 6899
Q ss_pred eccccccccccCC
Q 018205 100 ALTLTSKLFLKDK 112 (359)
Q Consensus 100 ~~t~~~~~l~~~~ 112 (359)
.+|+.++.|.+|+
T Consensus 73 ~lt~~s~~L~~Dh 85 (85)
T d1tw3a1 73 VPTEVGELLADDH 85 (85)
T ss_dssp EECTTGGGGSTTS
T ss_pred ecCHHHHHhhcCC
Confidence 9999999988774
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.60 E-value=2.5e-15 Score=130.38 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=86.2
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCC-CCC-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQ-SIP-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~-~~p-~~ 253 (359)
..++..+. ..+..+|||||||+|.++..++++ +.+++|+|+++ |++.|++ ..++++.++|+.+ +++ .|
T Consensus 31 ~~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 31 EEIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp HHHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence 44555555 566789999999999999999987 56899999965 9988873 4579999999965 444 49
Q ss_pred cEEEEc-chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 254 DAFFFK-AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 254 D~i~~~-~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
|+|+|. .++++++.++..++|++++++|+| ||.+++..
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence 999985 688888877888999999999999 78777643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.58 E-value=3.3e-15 Score=124.61 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=89.3
Q ss_pred HHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------------------CCCceEeeC
Q 018205 184 IVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------------------TDNLKFIAG 244 (359)
Q Consensus 184 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------------------~~~v~~~~~ 244 (359)
....+. .+++.+|||+|||+|..+..|+++ +.+++|+|+++ +++.|++ ...+++..+
T Consensus 12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHC--CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHcC--CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 344454 677899999999999999999998 78999999976 8887762 345678888
Q ss_pred CCCCCCC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 245 DMFQSIP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 245 d~~~~~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|+++..+ .+|+|++..++|++++++...+++++.++|+| ||.+++.......
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~ 143 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ 143 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence 8865322 49999999999999988888999999999999 8888876655443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.57 E-value=1e-14 Score=124.29 Aligned_cols=136 Identities=10% Similarity=0.075 Sum_probs=104.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCCC--C--CccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQSI--P--PADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~~--p--~~D~i~~~~vl 262 (359)
+.++.+|||+|||+|.++..+++..|+.+++++|+++ +++.+. ..+++.++.+|...+. . .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 6788999999999999999999999999999999954 776554 4678888888885421 1 37787777888
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
++..+ ...+++++++.|+| ||.+++...........+ .....+++.+.|+++||++
T Consensus 152 ~~~~~--~~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~-------------------~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 AQPNQ--AEILIKNAKWFLKK---GGYGMIAIKARSIDVTKD-------------------PKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSC-------------------HHHHHHHHHHHHHHHTEEE
T ss_pred cchHH--HHHHHHHHHHhccc---CceEEEEeeccccCCCCC-------------------HHHHHHHHHHHHHHcCCEE
Confidence 87754 45699999999999 898888776554332211 0012367889999999999
Q ss_pred eEEEEeCCc
Q 018205 343 FKITPVYGI 351 (359)
Q Consensus 343 ~~~~~~~~~ 351 (359)
++...+..+
T Consensus 208 ve~idL~py 216 (230)
T d1g8sa_ 208 VDEVDIEPF 216 (230)
T ss_dssp EEEEECTTT
T ss_pred EEEecCCCC
Confidence 999887543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=5.6e-15 Score=127.51 Aligned_cols=97 Identities=16% Similarity=0.338 Sum_probs=78.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC-CCC--CccEEEE-cchhccCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ-SIP--PADAFFF-KAIFHAFV 266 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~-~~p--~~D~i~~-~~vl~~~~ 266 (359)
.++..+|||||||+|.++..+++. +.+++|+|+++ +++.|++.....++.+|+.+ +++ .||+|++ ..++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 356789999999999999999876 67999999965 99988864444577888855 444 4999997 57899998
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
|.+ ++|++++++|+| ||.+++..+
T Consensus 118 d~~--~~l~~i~r~Lk~---gG~~ii~~~ 141 (246)
T d2avna1 118 NKD--KAFSEIRRVLVP---DGLLIATVD 141 (246)
T ss_dssp CHH--HHHHHHHHHEEE---EEEEEEEEE
T ss_pred hHH--HHHHHHHhhcCc---CcEEEEEEC
Confidence 774 599999999999 887777654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.2e-14 Score=119.45 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=101.1
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----------------------CCCCceEeeCCCC
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----------------------DTDNLKFIAGDMF 247 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----------------------~~~~v~~~~~d~~ 247 (359)
..+..+|||+|||+|..+..|+++ +.+|+|+|+++ +++.|+ ...++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 456789999999999999999987 77999999966 776432 1468899999986
Q ss_pred CC--C--CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCC
Q 018205 248 QS--I--PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRG 323 (359)
Q Consensus 248 ~~--~--p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (359)
+. . ..||+|+...++|+++.++...+++++.++|+| ||.+++........... ..-
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~-----------------gpp 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHP-----------------GPP 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCC-----------------CSS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCC-----------------CCC
Confidence 52 2 249999999999999999889999999999999 89888877665432211 001
Q ss_pred cccCHHHHHHHHHHcCCceeEE
Q 018205 324 SERTEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 324 ~~~t~~~~~~ll~~aGf~~~~~ 345 (359)
...+.+++.++|.. +|.+..+
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEEE
Confidence 23478999999954 6765444
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.49 E-value=1.5e-14 Score=104.09 Aligned_cols=85 Identities=20% Similarity=0.233 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 14 EAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
.....+++++.||+.+++|++|+++||||.|.+ +|+|++|||+++|+ +++.+.|+||+|++.|+|++.+.
T Consensus 6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~---~~~~l~rLlr~L~a~gll~~~~d----- 75 (92)
T d1qzza1 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGEK----- 75 (92)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCCC-----
T ss_pred hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCc---CchHHHHHHHHHHHCCCeeeecC-----
Confidence 356789999999999999999999999999987 89999999999999 78999999999999999998752
Q ss_pred CccceEeccccccccc
Q 018205 94 QEEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~ 109 (359)
+.+.|++|+.+..+.
T Consensus 76 -~~~~~~~t~~g~lL~ 90 (92)
T d1qzza1 76 -QGRPLRPTRLGMLLA 90 (92)
T ss_dssp --CCCCEECTTGGGGS
T ss_pred -CCceecccHHHHhcc
Confidence 134688888887765
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.49 E-value=3.4e-14 Score=123.35 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=83.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-CC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-SI-P 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~~-p 251 (359)
..+++.+. ++..+|||||||+|..+..+++... .+++|+|+++ +++.|+ ...++.+.++|+.. +. +
T Consensus 15 ~~lI~~~~---~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~ 90 (252)
T d1ri5a_ 15 ACLIRLYT---KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL 90 (252)
T ss_dssp HHHHHHHC---CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC
T ss_pred HHHHHHhC---CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc
Confidence 44555553 5678999999999999999988743 4799999965 888775 23478999999965 32 2
Q ss_pred --CccEEEEcchhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 252 --PADAFFFKAIFHAFV--DEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 252 --~~D~i~~~~vl~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.||+|+|..++|++. .++...+|++++++|+| ||.+++..
T Consensus 91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~ 134 (252)
T d1ri5a_ 91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTV 134 (252)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEe
Confidence 399999999999973 45677899999999999 88877754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=8.2e-14 Score=122.77 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=91.9
Q ss_pred CCCeEEEeCCCcchHHHHHHH----HCCC--CeEEEeeccc-ccccCCC-------CCCc--eEeeCCCC-------CCC
Q 018205 194 GLGSLVDVGGGTGSFARIISE----AFPG--IKCTVLDLPH-VVPKVPD-------TDNL--KFIAGDMF-------QSI 250 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~----~~p~--~~~~~~D~~~-~~~~a~~-------~~~v--~~~~~d~~-------~~~ 250 (359)
+..+|||||||+|.++..+++ .+++ .+++++|+++ +++.|++ ...+ .+...++. ...
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 345899999999998776655 4554 3679999965 8876652 1233 33344331 112
Q ss_pred --CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhh-hh-hhcCCccc
Q 018205 251 --PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDML-MM-VAVRGSER 326 (359)
Q Consensus 251 --p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~g~~~ 326 (359)
..||+|++.+++|++++. .++|++++++|+| ||.++|........ .... +..+. .. .......+
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp---gG~l~i~~~~~~~~-----~~~l--~~~~~~~~~~~~~~~~~ 187 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLIIVVSGSSG-----WDKL--WKKYGSRFPQDDLCQYI 187 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEEEECTTSH-----HHHH--HHHHGGGSCCCTTSCCC
T ss_pred CCCceeEEEEccceecCCCH--HHHHHHHHhhCCC---CCEEEEEEecCcch-----HHHH--HHHHHHhcCCCcccccC
Confidence 249999999999999776 5699999999999 88888876532211 1111 11111 10 01234567
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 018205 327 TEKEWEKLFLDAGFSHFKI 345 (359)
Q Consensus 327 t~~~~~~ll~~aGf~~~~~ 345 (359)
+.++|.++|.+.||+....
T Consensus 188 ~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 188 TSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999985443
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.46 E-value=8.7e-14 Score=102.21 Aligned_cols=101 Identities=21% Similarity=0.338 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCC---CCHHHHHHhcCCCCCCc---ccHHHHHHHHHccCceee
Q 018205 12 MFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRP---ITLPQLVSALEINPTKA---DGLFKLMRLLVHTGFFST 85 (359)
Q Consensus 12 ~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~---~t~~ela~~~~~~~~~~---~~l~~~L~~L~~~gll~~ 85 (359)
..++....+++..+++.+++|++|++|||+|+|..+|++ +|+.||+.++.+.+.+. ..|.|+||.|++.|+|..
T Consensus 3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~ 82 (110)
T d1fp1d1 3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 82 (110)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcccc
Confidence 345667889999999999999999999999999986544 79999999988643333 469999999999999976
Q ss_pred ecccccccCccceEeccccccccccCC
Q 018205 86 ANVQSAQQQEEEAYALTLTSKLFLKDK 112 (359)
Q Consensus 86 ~~~~~~~~~~~~~~~~t~~~~~l~~~~ 112 (359)
......+...+..|.+||.+++|++++
T Consensus 83 ~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 83 TTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccCCCCCeeeEEecchhhHhhcCCC
Confidence 532111111233699999999999875
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.9e-14 Score=123.96 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=95.8
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCc--------------------------
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNL-------------------------- 239 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v-------------------------- 239 (359)
..++.+|||||||+|.++..++... ..+++|+|+++ +++.|++ ...+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3456799999999999887776653 33799999965 8887652 1111
Q ss_pred -----eEee----CCC-CCCCC--CccEEEEcchhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchH
Q 018205 240 -----KFIA----GDM-FQSIP--PADAFFFKAIFHAFVD--EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQ 305 (359)
Q Consensus 240 -----~~~~----~d~-~~~~p--~~D~i~~~~vl~~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~ 305 (359)
.... .+. ..+.+ .||+|++.+++|+++. ++...++++++++|+| ||.+++.+..........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~~~- 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMVG- 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEET-
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccccceec-
Confidence 0111 111 11222 4999999999999863 4667899999999999 899888876543321100
Q ss_pred HHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 306 LTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+. ......++.+++.++|++|||+++++...
T Consensus 204 --------~~----~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 204 --------KR----EFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp --------TE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred --------cc----cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00 01123568999999999999998888544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=1.8e-13 Score=118.03 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=95.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-----CCCceEeeCCCCCCCC--CccEEEEcchhcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-----TDNLKFIAGDMFQSIP--PADAFFFKAIFHA 264 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-----~~~v~~~~~d~~~~~p--~~D~i~~~~vl~~ 264 (359)
.++.+|||+|||+|.++..+++. +.+++++|++ .+++.|++ .-++++..+|+.+..+ .||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc-
Confidence 56789999999999999988775 5789999995 48888772 3466888888854333 599999865443
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeE
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFK 344 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~ 344 (359)
....+++.+.++|+| ||++++.+.... ..+++.+.++++||++++
T Consensus 196 ----~l~~l~~~~~~~Lkp---GG~lilSgil~~----------------------------~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 196 ----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEEE
T ss_pred ----cHHHHHHHHHHhcCC---CcEEEEEecchh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 346689999999999 898888653321 235678889999999999
Q ss_pred EEEeCCceeE
Q 018205 345 ITPVYGIKSL 354 (359)
Q Consensus 345 ~~~~~~~~~v 354 (359)
......+..+
T Consensus 241 ~~~~~~Wv~l 250 (254)
T d2nxca1 241 EAAEGEWVLL 250 (254)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 8887766544
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.41 E-value=1.8e-13 Score=100.17 Aligned_cols=100 Identities=24% Similarity=0.294 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCC--CCCCHHHHHHhcCCCCCC-cccHHHHHHHHHccCceeeeccc
Q 018205 13 FEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHG--RPITLPQLVSALEINPTK-ADGLFKLMRLLVHTGFFSTANVQ 89 (359)
Q Consensus 13 ~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~--~~~t~~ela~~~~~~~~~-~~~l~~~L~~L~~~gll~~~~~~ 89 (359)
.++.-..+++..+++.+++|++|++|||||+|..+| .++|..||+.++...+.+ ...|.|+||.|++.|+|......
T Consensus 5 ee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~ 84 (107)
T d1kyza1 5 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRT 84 (107)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeec
Confidence 345556779999999999999999999999998865 467999999999884222 35799999999999999865321
Q ss_pred ccccCccceEeccccccccccCC
Q 018205 90 SAQQQEEEAYALTLTSKLFLKDK 112 (359)
Q Consensus 90 ~~~~~~~~~~~~t~~~~~l~~~~ 112 (359)
..++..+..|.+||.+++|++|+
T Consensus 85 ~~dg~~~~~Y~LTpvsk~Lv~de 107 (107)
T d1kyza1 85 QQDGKVQRLYGLATVAKYLVKNE 107 (107)
T ss_dssp CTTSCEEEEEEECHHHHHHSCCT
T ss_pred CCCCCeeeEEecchhHHhhcCCC
Confidence 11111234699999999998763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.1e-13 Score=119.19 Aligned_cols=93 Identities=16% Similarity=0.233 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-CCCCceEeeCCCCC-CCC--CccEEEEcchhccCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFHAFVD 267 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~~~~~ 267 (359)
.+..+|||||||+|.++..+++.+|+.+++|+|++. +++.|+ ..+++++.++|+.+ +++ .||+|++.+++++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 467899999999999999999999999999999965 888876 36789999999965 444 3999999888765
Q ss_pred hHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 268 EDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 268 ~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
+++++++||| ||.+++..+..
T Consensus 160 ------~~e~~rvLkp---gG~l~~~~p~~ 180 (268)
T d1p91a_ 160 ------AEELARVVKP---GGWVITATPGP 180 (268)
T ss_dssp ------HHHHHHHEEE---EEEEEEEEECT
T ss_pred ------HHHHHHHhCC---CcEEEEEeeCC
Confidence 4678999999 89999887653
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.2e-13 Score=117.76 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=96.0
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCC---------------------------
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDN--------------------------- 238 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~--------------------------- 238 (359)
..++.+|||||||+|.+....+.+.. .+++++|.++ +++.+++ ...
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 34578999999999988765554443 3799999965 8876641 111
Q ss_pred ----ceEeeCCCCCC-------C-C-CccEEEEcchhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcc
Q 018205 239 ----LKFIAGDMFQS-------I-P-PADAFFFKAIFHAFV--DEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKED 303 (359)
Q Consensus 239 ----v~~~~~d~~~~-------~-p-~~D~i~~~~vl~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~ 303 (359)
......|+..+ . + .||+|++.+++|+.+ .++..++|++++++||| ||.+++.+.........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~~ 207 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYLA 207 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCccccc
Confidence 12334455331 1 1 399999999999985 24578899999999999 89988888765432110
Q ss_pred hHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 304 AQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
.... .....++.+++.++|+++||++++....
T Consensus 208 ----------~~~~---~~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 208 ----------GEAR---LTVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp ----------TTEE---EECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----------CCcc---cccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 0000 0113469999999999999998776533
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.38 E-value=8.6e-13 Score=110.61 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=95.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCC-CC--CccEE-EEcchh
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQS-IP--PADAF-FFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~-~p--~~D~i-~~~~vl 262 (359)
+.+..+|||+|||+|.++..+++..|+.+++++|+++ +++.|+ ...++.++.+|...+ .+ .+|.+ ++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 6788999999999999999999999988999999954 888765 367899999998542 22 12222 233345
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
++..+ ...+++++++.|+| ||.+++...........+ ... ..++..+.+ ++||++
T Consensus 134 ~~~~~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~---~~~----------------~~~~~~~~l-~~gf~i 188 (209)
T d1nt2a_ 134 AQKNQ--IEILKANAEFFLKE---KGEVVIMVKARSIDSTAE---PEE----------------VFKSVLKEM-EGDFKI 188 (209)
T ss_dssp CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSC---HHH----------------HHHHHHHHH-HTTSEE
T ss_pred cChhh--HHHHHHHHHHHhcc---CCeEEEEEEccccCCCCC---HHH----------------HHHHHHHHH-HcCCEE
Confidence 55533 45699999999999 899988764332211110 000 011122233 479999
Q ss_pred eEEEEeCC---ceeEEEEe
Q 018205 343 FKITPVYG---IKSLIEVY 358 (359)
Q Consensus 343 ~~~~~~~~---~~~vi~~~ 358 (359)
++...+.+ .+.+|.++
T Consensus 189 ~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 189 VKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEEEECTTTCTTEEEEEEE
T ss_pred EEEEccCCCccCcEEEEEE
Confidence 99887754 35566665
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=2e-12 Score=107.41 Aligned_cols=103 Identities=14% Similarity=0.340 Sum_probs=82.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC--------CCCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP--------DTDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--------~~~~v~~~~~d~~~~~p-- 251 (359)
-+++.++ ..+..+|||+|||+|.++..+++..+ +++++|++. +++.++ ...++++..+|+++..+
T Consensus 43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 4566666 56789999999999999999998765 699999954 777765 24578999999977554
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++...+|.. .+...++++++.++|+| ||.+++.
T Consensus 119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEE
Confidence 49999998887754 34456799999999999 8888764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.3e-11 Score=104.44 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=99.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCCCC--CccEEEEcch--
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQSIP--PADAFFFKAI-- 261 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~~p--~~D~i~~~~v-- 261 (359)
....+|||+|||+|..+..++..+|+++++++|++. .++.|++ ..+++++.+|++++++ .||+|+++--
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 456789999999999999999999999999999965 8887772 3579999999988665 4999998611
Q ss_pred -----------hccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhh
Q 018205 262 -----------FHAFVD----------EDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVA 320 (359)
Q Consensus 262 -----------l~~~~~----------~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (359)
+.+-+. ....++++++.+.|+| ||.+++ |... +
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig~-~--------------------- 240 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHGW-Q--------------------- 240 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECCS-S---------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EECc-h---------------------
Confidence 111110 2345688999999999 676665 3211 0
Q ss_pred cCCcccCHHHHHHHHHHcCCceeEEEEe-CCceeEEEEe
Q 018205 321 VRGSERTEKEWEKLFLDAGFSHFKITPV-YGIKSLIEVY 358 (359)
Q Consensus 321 ~~g~~~t~~~~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 358 (359)
..+...+++++.||+.+++... .+...++.++
T Consensus 241 ------q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 241 ------QGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp ------CHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred ------HHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 2356778899999987766554 6666777654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=3.3e-12 Score=112.97 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----------CCCceEeeCCCCC---CC---CCccE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----------TDNLKFIAGDMFQ---SI---PPADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----------~~~v~~~~~d~~~---~~---p~~D~ 255 (359)
.+..+|||||||+|.++..|+++ +.+++|+|+++ |++.|++ ..+..+...|+.. .. ..||+
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 45679999999999999999987 67999999965 9887762 1233455555532 12 24998
Q ss_pred EEEc-chhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 256 FFFK-AIFHAFVD-----EDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 256 i~~~-~vl~~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|+|. ++++|+++ ++..++|++++++|+| ||.+++.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 173 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVID 173 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEEe
Confidence 8864 68888764 4577899999999999 7876663
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.8e-12 Score=110.51 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=87.8
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCC---CCC--CccEEE----
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQ---SIP--PADAFF---- 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~---~~p--~~D~i~---- 257 (359)
..+.+|||||||+|..+..+++..+ .+++++|++. +++.|+ ...++.++.+|... .++ .||.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4567999999999999999988654 4899999954 888776 24566777776522 333 377766
Q ss_pred -EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHH
Q 018205 258 -FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFL 336 (359)
Q Consensus 258 -~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~ 336 (359)
+...++++.+. ..++++++++|+| ||.+++.+..... . ..... .........+.+...+.
T Consensus 131 ~~~~~~~~~~~~--~~~~~~~~r~Lkp---GG~~~~~~~~~~~--------~--~~~~~----~~~~~~~~~~~~~~~l~ 191 (229)
T d1zx0a1 131 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWG--------E--LMKSK----YSDITIMFEETQVPALL 191 (229)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHH--------H--HTTTT----CSCHHHHHHHHTHHHHH
T ss_pred ccccccccccCH--HHHHHHHHHHcCC---CcEEEEEecCCcc--------h--hhhhh----hhhcchhhhhHHHHHHH
Confidence 56777777544 5699999999999 8877663321110 0 00000 00111112456677888
Q ss_pred HcCCceeEEE
Q 018205 337 DAGFSHFKIT 346 (359)
Q Consensus 337 ~aGf~~~~~~ 346 (359)
++||+..++.
T Consensus 192 ~agF~~~~i~ 201 (229)
T d1zx0a1 192 EAGFRRENIR 201 (229)
T ss_dssp HTTCCGGGEE
T ss_pred HCCCeeEEEE
Confidence 9999865554
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.22 E-value=4.6e-12 Score=104.38 Aligned_cols=101 Identities=21% Similarity=0.285 Sum_probs=80.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC---CC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ---SI 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~---~~ 250 (359)
..++..+. ..+..+|||+|||+|.++..+++.. .+++++|++ .+++.|++ .++++++++|+.+ +.
T Consensus 23 ~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~ 98 (186)
T d1l3ia_ 23 CLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (186)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence 35566666 6788999999999999999998764 589999995 58888772 4799999999854 33
Q ss_pred CCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 251 PPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 251 p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
+.||+|++....+++ ..+++.+.+.|+| ||++++..
T Consensus 99 ~~~D~v~~~~~~~~~-----~~~~~~~~~~Lkp---gG~lvi~~ 134 (186)
T d1l3ia_ 99 PDIDIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVTA 134 (186)
T ss_dssp CCEEEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeCccccc-----hHHHHHHHHHhCc---CCEEEEEe
Confidence 469999998765543 4689999999999 88887754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.21 E-value=1.6e-11 Score=102.10 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=76.8
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC--CccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP--PADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl 262 (359)
...|||||||+|.++..+++.+|+..++|+|++. ++..|. ...++.++.+|+.. .++ .+|.|++.+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 4579999999999999999999999999999954 666554 35689999999843 144 48999887776
Q ss_pred ccCCchH------HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 263 HAFVDED------CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 263 ~~~~~~~------~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.+..... ...+|+.++++|+| ||.|+|.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 5443321 14699999999999 99998865
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=1.3e-11 Score=105.69 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=78.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC--
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP-- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p-- 251 (359)
.++..++ +.++.+|||+|||+|.++..+++. .|+.+++++|.++ +++.|++ ..++++..+|+.+.++
T Consensus 76 ~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 76 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 4555666 778899999999999999999987 5788999999954 7877662 4789999999966555
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.||.|++ +.+++ ..+|++++++|+| ||.+++..+
T Consensus 154 ~fD~V~l-----d~p~p--~~~l~~~~~~LKp---GG~lv~~~P 187 (250)
T d1yb2a1 154 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLP 187 (250)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEES
T ss_pred eeeeeee-----cCCch--HHHHHHHHHhcCC---CceEEEEeC
Confidence 3999986 34444 3589999999999 888887543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.3e-11 Score=110.70 Aligned_cols=110 Identities=11% Similarity=0.126 Sum_probs=87.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---------------CCCCceEeeCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---------------DTDNLKFIAGD 245 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---------------~~~~v~~~~~d 245 (359)
..+++.+. +.+..+|||||||+|.++..+++.++..+++|+|+++ +++.|+ ...+++++++|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 46777776 7788999999999999999999999888999999955 777664 25689999999
Q ss_pred CCC-CCC----CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 246 MFQ-SIP----PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 246 ~~~-~~p----~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
+.+ ++. .+|+|++++.. +. ++....|+++.+.||| ||++++.+...+.
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~-f~--~~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~ 271 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKE---GGRIVSSKPFAPL 271 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTT-TC--HHHHHHHHHHHTTCCT---TCEEEESSCSSCT
T ss_pred ccccccccccCcceEEEEccee-cc--hHHHHHHHHHHHhCCC---CcEEEEecccCCC
Confidence 965 222 36888876654 34 4556799999999999 9999887765443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=7.6e-11 Score=99.54 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=96.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCC----CCCCceEeeCCCCCC--C----CCccEEEEc
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQS--I----PPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~~--~----p~~D~i~~~ 259 (359)
+.++.+|||+|||+|.++..+++.. |+-+++++|+++ +++.++ ...++..+..|...+ . +.+|+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999975 788999999954 777654 456778888887432 1 23676665
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+++. ++...+++++++.|+| ||.+++............ .. .-.++..++ .+.|
T Consensus 150 -d~~~~--~~~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~---~~----------------~v~~~v~~l-~~~g 203 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKE---PE----------------QVFREVERE-LSEY 203 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSC---HH----------------HHHHHHHHH-HHTT
T ss_pred -Ecccc--chHHHHHHHHHHhccc---CCeEEEEEECCccCCCCC---HH----------------HHHHHHHHH-HHcC
Confidence 34444 3445699999999999 888887654332221110 00 011233344 4679
Q ss_pred CceeEEEEeCCc---eeEEEEeC
Q 018205 340 FSHFKITPVYGI---KSLIEVYP 359 (359)
Q Consensus 340 f~~~~~~~~~~~---~~vi~~~~ 359 (359)
|++++...+.++ +.++.++|
T Consensus 204 f~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCCceEEEEEEe
Confidence 999999887543 67887775
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=2.9e-11 Score=104.75 Aligned_cols=126 Identities=16% Similarity=0.257 Sum_probs=95.0
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCCC-------CCCceEeeCCCCCCCC-
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQSIP- 251 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~~~p- 251 (359)
..++..++ +.++.+|||+|||+|.++..+++.. |+.+++++|.+ ++++.|++ .+++.+...|+...++
T Consensus 93 ~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 93 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 35666777 7889999999999999999999875 78899999995 48887762 4678888888755443
Q ss_pred -CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHH
Q 018205 252 -PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKE 330 (359)
Q Consensus 252 -~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~ 330 (359)
.+|.|+ ++.+++ ..+|+++.++||| ||++++..+... ..++
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKp---GG~lv~~~P~~~----------------------------Qv~~ 212 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE 212 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCC---CCEEEEEeCccc----------------------------HHHH
Confidence 377765 466666 3599999999999 899988653321 1234
Q ss_pred HHHHHHHcCCceeEEEE
Q 018205 331 WEKLFLDAGFSHFKITP 347 (359)
Q Consensus 331 ~~~ll~~aGf~~~~~~~ 347 (359)
..+.+++.||..+++..
T Consensus 213 ~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 213 TLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHCCceeEEEEE
Confidence 45667888988777664
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.15 E-value=3.2e-11 Score=103.87 Aligned_cols=104 Identities=13% Similarity=0.269 Sum_probs=84.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC---------CCCceEeeCCCCC-C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD---------TDNLKFIAGDMFQ-S 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~---------~~~v~~~~~d~~~-~ 249 (359)
..++..++ ..++.+|||+|||+|.++..|++. .|+-+++++|++ ++++.|++ .+++.++.+|+.+ +
T Consensus 86 s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 86 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 35566666 788999999999999999999987 688899999995 48887762 5789999999965 4
Q ss_pred CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 250 IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 250 ~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
++ .||.|++ +++++. .++.+++++||| ||.+++..+..
T Consensus 164 ~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCcc
Confidence 55 4999986 466663 489999999999 89998876443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=3.6e-11 Score=100.93 Aligned_cols=98 Identities=19% Similarity=0.353 Sum_probs=78.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecc-cccccCC------CCCCceEeeCCCCCCCC---
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLP-HVVPKVP------DTDNLKFIAGDMFQSIP--- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~------~~~~v~~~~~d~~~~~p--- 251 (359)
.+++.+. +.+..+|||||||+|..+..+++.. ++.+++++|+. ++++.|+ ...++.++.+|..+..+
T Consensus 66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 4566666 7788999999999999999999875 67899999994 4888776 25788999999865333
Q ss_pred CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 252 PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 252 ~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.||+|++..++++.++ .+.+.|+| ||++++.
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKE---GGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEE---EEEEEEE
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCC---CcEEEEE
Confidence 4999999999988764 34567999 8988773
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.11 E-value=1.6e-10 Score=96.00 Aligned_cols=96 Identities=17% Similarity=0.261 Sum_probs=74.3
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCC---CCC--CccEEEEcchh
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ---SIP--PADAFFFKAIF 262 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~---~~p--~~D~i~~~~vl 262 (359)
...|||||||+|.++..+++.+|+..++|+|++. ++..|. ...++.++.+|+.. .+| .+|.|++.+.-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 4579999999999999999999999999999954 666554 35789999999844 234 38888765543
Q ss_pred ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 263 HAFVDED-------CLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 263 ~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
.|+... ...+|+.+.++|+| ||.+++.+
T Consensus 112 -Pw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T 146 (204)
T d1yzha1 112 -PWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 146 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred -cccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 333221 14699999999999 99998854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=2.1e-10 Score=104.51 Aligned_cols=110 Identities=15% Similarity=0.204 Sum_probs=82.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------------CCCceE-eeC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------------TDNLKF-IAG 244 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------------~~~v~~-~~~ 244 (359)
..+++.+. +.+..+|||||||+|..+..++..++..+++|+|++. +++.|+. ...+.+ ..+
T Consensus 206 ~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 56777777 7888999999999999999999999877999999965 8877752 223333 345
Q ss_pred CCCCC------CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 245 DMFQS------IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 245 d~~~~------~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
+++.. ++.+|+|++++.+ +. ++....|+++.+.||| ||+|++.+...+.
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~-f~--~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~ 338 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKV---GCKIISLKSLRSL 338 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCT---TCEEEESSCSSCT
T ss_pred chhhccccccccccceEEEEeccc-Cc--hHHHHHHHHHHHhcCC---CcEEEEecccCCC
Confidence 55432 2358888887644 33 5567799999999999 9999887765443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=3.4e-10 Score=100.88 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-------CCCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+.++|||||||+|.++..+++..+ .+|+++|.+++...+. ..++++++.+|+.+ +.+ .+|+|++..+.+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 468999999999999998888743 3799999976444332 26789999999966 444 499999877777
Q ss_pred cCCch-HHHHHHHHHHHhcccCCCCcEEEE
Q 018205 264 AFVDE-DCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 264 ~~~~~-~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
....+ ....++..+.++|+| ||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp---~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAP---DGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCC---CeEEEe
Confidence 65433 567799999999999 787763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=3.2e-10 Score=95.66 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=77.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-----------CCCceEeeCCCCCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-----------TDNLKFIAGDMFQS 249 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-----------~~~v~~~~~d~~~~ 249 (359)
.+++.+...+.+..+|||||||+|..+..+++. .|..+++++|+. ++++.|++ ..++.+..+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 455555322567899999999999999888875 567899999994 58877652 46889999998653
Q ss_pred CC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 250 IP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 250 ~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
.+ .||+|++...+++.++ .+.+.|+| ||++++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKP---GGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcCC---CcEEEEE
Confidence 33 4999999999987754 35678999 8888874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=4.1e-10 Score=100.88 Aligned_cols=94 Identities=14% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-------CCCCceEeeCCCCC-CCC--CccEEEEcchhc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQ-SIP--PADAFFFKAIFH 263 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~-~~p--~~D~i~~~~vl~ 263 (359)
+.++|||||||+|.++..++++. ..+++++|.+++++.|+ ..++++++.+|+.+ ++| .+|+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 46899999999999999888764 34899999987655554 26789999999965 454 499999977776
Q ss_pred cCCc-hHHHHHHHHHHHhcccCCCCcEEE
Q 018205 264 AFVD-EDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 264 ~~~~-~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
.... .....++..+.++|+| ||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeccchhHHHHHHHHHhccCC---CeEEE
Confidence 6543 3456689999999999 77664
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.92 E-value=4.6e-10 Score=92.53 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=71.8
Q ss_pred CCCCeEEEeCCCcch----HHHHHHHHC----CCCeEEEeeccc-ccccCCC----------------------------
Q 018205 193 QGLGSLVDVGGGTGS----FARIISEAF----PGIKCTVLDLPH-VVPKVPD---------------------------- 235 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~----~~~~l~~~~----p~~~~~~~D~~~-~~~~a~~---------------------------- 235 (359)
.+..+|+++|||+|. +++.+.+.. ...++++.|++. +++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 346799999999997 344444432 245799999955 7776641
Q ss_pred ---------CCCceEeeCCCCCC----CCCccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 236 ---------TDNLKFIAGDMFQS----IPPADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 236 ---------~~~v~~~~~d~~~~----~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
...+.+...+.... ...||+|+|.+||++++++...+++++++++|+| ||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 12344555665442 1249999999999999999889999999999999 787666
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.9e-09 Score=95.64 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=73.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccCC-------CCCCceEeeCCCCC-CCC--CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKVP-------DTDNLKFIAGDMFQ-SIP--PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~d~~~-~~p--~~D~i~~~~v 261 (359)
..+.++|||||||+|.++..+++..+ .+++++|.++....+. ..++++++.+|+.+ ..| .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34578999999999999999998754 4899999976332222 36789999999965 344 5999999877
Q ss_pred hccCCch-HHHHHHHHHHHhcccCCCCcEEEE
Q 018205 262 FHAFVDE-DCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 262 l~~~~~~-~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.|....+ ....++....+.|+| ||.++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEES
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEec
Confidence 7765544 455678878899999 787763
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.90 E-value=1.1e-09 Score=91.94 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=75.3
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC----CCCCceEeeCCCCCCCC---Ccc
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP----DTDNLKFIAGDMFQSIP---PAD 254 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~----~~~~v~~~~~d~~~~~p---~~D 254 (359)
.+++.++ +.+..+|||||||+|.++..+++. ..+++++|.. ..++.|+ ...+++++.+|.....+ .||
T Consensus 61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhh--hcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 4566666 778899999999999999988887 4589999994 4776665 46789999999865333 399
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+|++...+++.++ .+.+.|+| ||++++.
T Consensus 137 ~Iiv~~a~~~ip~--------~l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred HHHhhcchhhhhH--------HHHHhcCC---CCEEEEE
Confidence 9999988877753 34467999 8988874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=9.8e-10 Score=97.41 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=80.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHH-CCCCeEEEeecc-cccccCCC-----------------CCCceEe
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA-FPGIKCTVLDLP-HVVPKVPD-----------------TDNLKFI 242 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~~-~~~~~a~~-----------------~~~v~~~ 242 (359)
..++..++ +.++.+|||+|||+|.++..|++. .|+.+++++|+. ++++.|++ .+++.+.
T Consensus 88 ~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 88 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 35667777 788999999999999999999987 588899999994 47776651 4689999
Q ss_pred eCCCCCC---CC--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 243 AGDMFQS---IP--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 243 ~~d~~~~---~p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.+|+.+. ++ .||.|++ +++++. .+|.+++++||| ||.+++..+..
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeCCH
Confidence 9998542 22 3899886 445442 389999999999 99998876544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.73 E-value=6e-09 Score=85.26 Aligned_cols=111 Identities=16% Similarity=0.275 Sum_probs=84.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCCC-----CCCceEeeCCCCC------C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVPD-----TDNLKFIAGDMFQ------S 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v~~~~~d~~~------~ 249 (359)
+++++.+. ..+...+||++||+|.++..+++++|+.+++++|. +++++.|++ .+++.++.++|.+ .
T Consensus 13 ~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 13 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 67788776 56778999999999999999999999999999999 558888762 5689999999843 1
Q ss_pred --CCCccEEEEcchh-----ccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 250 --IPPADAFFFKAIF-----HAFV--DEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 250 --~p~~D~i~~~~vl-----~~~~--~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
...+|.|++-.-+ ..-. -......|..+.++|+| ||.+++++...
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s 144 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHS 144 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSH
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeecccc
Confidence 2358888753222 1111 12345789999999999 99999877553
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.4e-07 Score=80.32 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=56.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC----C-----CCccE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS----I-----PPADA 255 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~----~-----p~~D~ 255 (359)
++..++||+|||+|..+..|+++.|+++++++|+++ +++.|++ .+++.++..+.... . ..||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 456799999999999999999999999999999954 8888772 57788877654221 1 13999
Q ss_pred EEEcchhcc
Q 018205 256 FFFKAIFHA 264 (359)
Q Consensus 256 i~~~~vl~~ 264 (359)
|+|+==++.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999876654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.67 E-value=2.7e-08 Score=85.42 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=85.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-------CCCCceEeeCCCCCCCC--CccEEEEcchh
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQSIP--PADAFFFKAIF 262 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~~p--~~D~i~~~~vl 262 (359)
.++.+|||+|||+|.++..+++.. ..+++++|+ |..++.++ -.+++++.++|+.+-.+ .||.|++...-
T Consensus 106 ~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 106 KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 184 (260)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence 467999999999999999999874 569999999 45777665 25789999999966333 39999875321
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcCCce
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAGFSH 342 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aGf~~ 342 (359)
....++..+.+.|++ ||.+.+.+....... .....+.+.++....|+.+
T Consensus 185 ------~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~~----------------------~~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 185 ------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDV 233 (260)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEE
T ss_pred ------chHHHHHHHHhhcCC---CCEEEEEeccccccc----------------------hhhHHHHHHHHHHHcCCce
Confidence 123478889999999 787766554322110 1123466778888899976
Q ss_pred e
Q 018205 343 F 343 (359)
Q Consensus 343 ~ 343 (359)
.
T Consensus 234 ~ 234 (260)
T d2frna1 234 E 234 (260)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.66 E-value=1.3e-08 Score=84.66 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=75.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC------CCCCceEeeCCCCCCCC---C
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP------DTDNLKFIAGDMFQSIP---P 252 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~~~p---~ 252 (359)
.+++.+. +.+..+|||||||+|..+..+++.. +.+++++|. +++++.|+ ..+++.++.+|..+..| .
T Consensus 69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 4566666 7788999999999999999888764 457999999 45777666 36899999999966433 4
Q ss_pred ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 253 ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
||.|++.......++. + .+.|+| ||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~----l----~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP----L----IEQLKI---GGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH----H----HHTEEE---EEEEEEE
T ss_pred ceeEEeecccccCCHH----H----HHhcCC---CCEEEEE
Confidence 9999999888877543 3 456999 8888774
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.64 E-value=1.8e-08 Score=84.47 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=74.7
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC------CCCeEEEeecc-cccccCCC-----------CCCceEeeC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF------PGIKCTVLDLP-HVVPKVPD-----------TDNLKFIAG 244 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------p~~~~~~~D~~-~~~~~a~~-----------~~~v~~~~~ 244 (359)
.+++.+...+.+..+|||||||+|..+..+++.. +..+++++|.. ++++.|++ ..++.+..+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 4555552226678999999999999988887752 45689999994 47776652 358999999
Q ss_pred CCCCCCC---CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 245 DMFQSIP---PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 245 d~~~~~p---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
|..+..+ .||.|++...+...++ .+.+.|+| ||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLAS---GGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH--------HHHHhcCC---CcEEEEE
Confidence 9866333 4999999999887753 24578999 8888774
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.41 E-value=1.2e-07 Score=77.56 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-CCCceEeeCCCCCCCCCccEEEEcc
Q 018205 195 LGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-TDNLKFIAGDMFQSIPPADAFFFKA 260 (359)
Q Consensus 195 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-~~~v~~~~~d~~~~~p~~D~i~~~~ 260 (359)
+++|||+|||+|.++..++...+ .+++++|++. +++.|++ ..+++++.+|+.+....||+|+++=
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NP 115 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNP 115 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCc
Confidence 68999999999999988777643 4899999954 7777763 5679999999954333599999863
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.33 E-value=3.1e-07 Score=72.05 Aligned_cols=95 Identities=8% Similarity=0.160 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC-------CCCCceEeeCCCCCC----CCCccEEEEcch
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQS----IPPADAFFFKAI 261 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~----~p~~D~i~~~~v 261 (359)
.+.+|||+|||+|.++...+.+... +++++|.. .+++.++ ..++++++++|.... ...||+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4689999999999999988887543 89999994 4766544 257799999998542 235999987421
Q ss_pred hccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 018205 262 FHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIV 296 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~ 296 (359)
+.......+|..+.+ +|+| +| ++++|..
T Consensus 93 ---y~~~~~~~~l~~i~~~~~L~~---~g-~iiiE~~ 122 (152)
T d2esra1 93 ---YAKETIVATIEALAAKNLLSE---QV-MVVCETD 122 (152)
T ss_dssp ---SHHHHHHHHHHHHHHTTCEEE---EE-EEEEEEE
T ss_pred ---hccchHHHHHHHHHHCCCcCC---Ce-EEEEEeC
Confidence 112334556666654 5888 55 4555544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.31 E-value=1.3e-06 Score=73.88 Aligned_cols=83 Identities=16% Similarity=0.309 Sum_probs=65.5
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC----CCCceEeeCCCCC-CCCC-cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD----TDNLKFIAGDMFQ-SIPP-AD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~----~~~v~~~~~d~~~-~~p~-~D 254 (359)
..+++.+. ..+..+|||||||+|.++..|++. ..+++++|+.. +++.+++ .++++++.+|+++ +++. .+
T Consensus 19 ~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 46677766 667889999999999999999998 45899999954 7777763 4789999999976 5553 44
Q ss_pred EEEEcchhccCCch
Q 018205 255 AFFFKAIFHAFVDE 268 (359)
Q Consensus 255 ~i~~~~vl~~~~~~ 268 (359)
..+.++.=++++.+
T Consensus 95 ~~vv~NLPY~Ist~ 108 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQ 108 (245)
T ss_dssp EEEEEECCSSSCHH
T ss_pred eeEeeeeehhhhHH
Confidence 55667777788765
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=3.9e-07 Score=78.18 Aligned_cols=66 Identities=15% Similarity=0.361 Sum_probs=53.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCCCC----CccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQSIP----PADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~~p----~~D~i~~~ 259 (359)
.+..+|+|+|||+|..+..+++ +|+.+++++|++. .++.|++ .+++.+..+|+++..+ .||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 3457899999999999999875 6899999999954 8877762 5678889999977543 59999986
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.3e-07 Score=76.31 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCC-------CCCCceEeeCCCCCC---------CCCcc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQS---------IPPAD 254 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~---------~p~~D 254 (359)
.++++|||||||+|..+..+++..| +.+++.+|.. +..+.|+ ..+++++..+|..+. ...||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 4579999999999999999999876 7899999994 4666655 367899999997431 12499
Q ss_pred EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 255 AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 255 ~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
+|+... ..+.....+..+.+.|+| || ++++|....
T Consensus 138 ~ifiD~-----dk~~y~~~~~~~~~lL~~---GG-vii~Dn~l~ 172 (219)
T d2avda1 138 VAVVDA-----DKENCSAYYERCLQLLRP---GG-ILAVLRVLW 172 (219)
T ss_dssp EEEECS-----CSTTHHHHHHHHHHHEEE---EE-EEEEECCSG
T ss_pred EEEEeC-----CHHHHHHHHHHHHHHhcC---Cc-EEEEeCCcc
Confidence 999743 223446688999999999 44 555555543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.22 E-value=8.7e-07 Score=72.78 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-----CCCceEeeCCCCCCCCCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-----TDNLKFIAGDMFQSIPPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-----~~~v~~~~~d~~~~~p~~D~i~~~~vl 262 (359)
.+.+|||+|||+|.++..++.+. ..+++++|++. +++.+++ ..+.+++.+|..+....||+|+++--.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF 119 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence 46899999999999999887764 35899999954 7776652 457788999985444459999986544
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.22 E-value=2e-07 Score=77.47 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeecc-cccccCC-------CCCCceEeeCCCCCCC---------CCccE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLP-HVVPKVP-------DTDNLKFIAGDMFQSI---------PPADA 255 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~-------~~~~v~~~~~d~~~~~---------p~~D~ 255 (359)
++.+|||+|||+|..+..+++..+ +.+++.+|.. ++.+.|+ -.++|+++.+|..+.+ ..||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 478999999999999999999875 6899999994 4777665 2578999999985422 24899
Q ss_pred EEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 256 FFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 256 i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
|++-+- .........+.++.+.|+| || ++|+|.+...
T Consensus 136 ifiD~~---~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl~~ 172 (214)
T d2cl5a1 136 VFLDHW---KDRYLPDTLLLEKCGLLRK---GT-VLLADNVIVP 172 (214)
T ss_dssp EEECSC---GGGHHHHHHHHHHTTCEEE---EE-EEEESCCCCC
T ss_pred eeeccc---ccccccHHHHHHHhCccCC---Cc-EEEEeCcCCC
Confidence 987521 1111122346677788999 55 6676665543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.21 E-value=4.5e-07 Score=79.04 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=72.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC--------CCCceEeeCCCCCCC-------CCccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD--------TDNLKFIAGDMFQSI-------PPADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~--------~~~v~~~~~d~~~~~-------p~~D~ 255 (359)
..+..+|||+.||+|.++..++.. +.+|+++|.+. +++.|++ ..+++++++|.++.+ ..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 345789999999999999998876 67999999966 8887762 347999999996521 24999
Q ss_pred EEEc---chhc----cCC-chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 256 FFFK---AIFH----AFV-DEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 256 i~~~---~vl~----~~~-~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
|++. +.-. .+. ......+++.+.++|+| ||.+++....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~~ 253 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY 253 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEecC
Confidence 9972 1110 111 23345577888999999 7776666544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=4.6e-07 Score=80.26 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=71.9
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC-------CCCceEeeCCCCCC-------CCCccEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD-------TDNLKFIAGDMFQS-------IPPADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~-------~~~v~~~~~d~~~~-------~p~~D~i 256 (359)
..+..+|||+|||+|.++..++.... .+++++|+++ +++.+++ .++++++.+|+++. -..||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 35678999999999999999988743 3899999955 8777762 45789999998642 1249999
Q ss_pred EEcchhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 257 FFKAIFHAFVD-------EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 257 ~~~~vl~~~~~-------~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
++.---..-.. ....++++.+.++|+| ||.|++...
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s~ 264 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 264 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 97422111111 1234588888999999 787777653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.20 E-value=5.3e-07 Score=79.13 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC-----------CCCCceEeeCCCCC---CC-CCccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP-----------DTDNLKFIAGDMFQ---SI-PPADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----------~~~~v~~~~~d~~~---~~-p~~D~i 256 (359)
+.+++||.||+|.|..+..+++..|..+++++|+ +.+++.++ ..+|++++.+|..+ .. ..||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4578999999999999999998778889999999 55887665 36799999999854 22 359999
Q ss_pred EEcchhccCC----c--hHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 257 FFKAIFHAFV----D--EDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 257 ~~~~vl~~~~----~--~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++-.. +.+. . --..++++.+++.|+| ||.+++.
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ 194 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence 95321 1111 0 0124699999999999 7766553
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=3.5e-07 Score=80.72 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC------CCCceEeeCCCCCC-------CCCccEEEEc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD------TDNLKFIAGDMFQS-------IPPADAFFFK 259 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~------~~~v~~~~~d~~~~-------~p~~D~i~~~ 259 (359)
.+.+|||++||+|.++..++.. ..+++++|.+. +++.|++ .++++++++|.++. -..||+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4689999999999999998865 56899999965 8887762 46789999998541 1249999974
Q ss_pred chhccCC-------chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 260 AIFHAFV-------DEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 260 ~vl~~~~-------~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
---.... .....++++.+.++|+| ||.|++...
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 2111111 12234689999999999 787776553
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.10 E-value=3.5e-06 Score=70.66 Aligned_cols=83 Identities=18% Similarity=0.372 Sum_probs=61.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCCC-cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIPP-AD 254 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p~-~D 254 (359)
..+++... ..+..+|||||||+|.++..|++. ..+++++|+.. +++..+ ..++++++.+|+++ +++. -.
T Consensus 11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~ 86 (235)
T d1qama_ 11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 86 (235)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccccc
Confidence 34455555 567899999999999999999998 45799999954 665443 46899999999976 4553 34
Q ss_pred EEEEcchhccCCch
Q 018205 255 AFFFKAIFHAFVDE 268 (359)
Q Consensus 255 ~i~~~~vl~~~~~~ 268 (359)
..+.++.=++.+-+
T Consensus 87 ~~vv~NLPYnIss~ 100 (235)
T d1qama_ 87 YKIFGNIPYNISTD 100 (235)
T ss_dssp CEEEEECCGGGHHH
T ss_pred ceeeeeehhhhhHH
Confidence 45556766666443
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.09 E-value=1.1e-06 Score=70.30 Aligned_cols=95 Identities=9% Similarity=0.183 Sum_probs=59.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCCC-------CCCceEeeCCCCC-----CCCCccEEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVPD-------TDNLKFIAGDMFQ-----SIPPADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~-------~~~v~~~~~d~~~-----~~p~~D~i~~ 258 (359)
...+.+|||+|||+|.++..++.+ +.+++++|.+ .+++.+++ ..++.....|.+. ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 456789999999999999988877 5689999995 47776652 3344444444321 1224999997
Q ss_pred cchhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 018205 259 KAIFHAFVDEDCLKILKRC--REAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~--~~~L~p~~~gG~lli~~~~ 296 (359)
.=-.+ .... +++.++ ..+|+| || +++++..
T Consensus 117 DPPY~-~~~~---~~l~~l~~~~ll~~---~g-~ivie~~ 148 (171)
T d1ws6a1 117 APPYA-MDLA---ALFGELLASGLVEA---GG-LYVLQHP 148 (171)
T ss_dssp CCCTT-SCTT---HHHHHHHHHTCEEE---EE-EEEEEEE
T ss_pred ccccc-cCHH---HHHHHHHHcCCcCC---Ce-EEEEEec
Confidence 42211 1211 233333 246888 55 5555543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=9.8e-07 Score=76.08 Aligned_cols=96 Identities=14% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC----------------CCCCceEeeCCCCC---CCCC
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP----------------DTDNLKFIAGDMFQ---SIPP 252 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~d~~~---~~p~ 252 (359)
+++.+||.+|+|.|..+..+++ +|..+++++|+ +.+++.|+ ..+|++++.+|... .-..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 5678999999999999999886 55679999999 55887664 25799999999853 2346
Q ss_pred ccEEEEcchhccCCchH---HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 253 ADAFFFKAIFHAFVDED---CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 253 ~D~i~~~~vl~~~~~~~---~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
||+|++-.. ....... ..++++.+++.|+| +|.+++.
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 189 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence 999996332 2221111 14689999999999 7766553
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=1.6e-06 Score=74.48 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC----------CCCCceEeeCCCCC---C-CCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP----------DTDNLKFIAGDMFQ---S-IPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------~~~~v~~~~~d~~~---~-~p~~D~i~ 257 (359)
+.+.+||-||+|.|..+..+++..+..+++++|+ +.+++.|+ ..+|++++.+|... . -..||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4578999999999999999998777779999999 55887765 36899999999854 2 22599999
Q ss_pred EcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEE
Q 018205 258 FKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 258 ~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
+-..- ..... -..++++.+++.|+| +|.++.
T Consensus 154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~ 187 (274)
T d1iy9a_ 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKE---DGIFVA 187 (274)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEE---EEEEEE
T ss_pred EcCCC-CCCcchhhccHHHHHHHHhhcCC---CceEEE
Confidence 64321 11100 124599999999999 665554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=1.1e-06 Score=76.12 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC----------CCCCceEeeCCCCC---CC-CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP----------DTDNLKFIAGDMFQ---SI-PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------~~~~v~~~~~d~~~---~~-p~~D~i~ 257 (359)
+.+.+||-||+|.|..+..+++..|..+++++|+ +.+++.++ ..+|++++.+|..+ .. ..||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4578999999999999999998777789999999 55888776 26899999999854 22 2499999
Q ss_pred EcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+-..-..-... -..++++.+++.|+| +|.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence 64221110000 024699999999999 6765553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.5e-06 Score=75.06 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=71.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC----------CCCCceEeeCCCCC---CC-CCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP----------DTDNLKFIAGDMFQ---SI-PPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------~~~~v~~~~~d~~~---~~-p~~D~i~ 257 (359)
+.+++||-||+|.|..+..+++..+..+++++|+ +.+++.|+ ..+|++++.+|..+ .. ..||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998777789999999 55888776 26899999999754 22 2599999
Q ss_pred EcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+-. .+..... -..++++.+++.|+| ||.+++.
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 191 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ 191 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence 742 2211111 113589999999999 6765554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.00 E-value=1.9e-06 Score=74.68 Aligned_cols=97 Identities=14% Similarity=0.187 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC----------CCCCceEeeCCCCC---CCC--CccEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP----------DTDNLKFIAGDMFQ---SIP--PADAF 256 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------~~~~v~~~~~d~~~---~~p--~~D~i 256 (359)
+.+.+||-||+|.|..+..+++..|-.+++++|+ +.+++.++ ..+|++++.+|.++ ..+ .||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 5678999999999999999998777678999999 55888776 27899999999753 222 59999
Q ss_pred EEcchhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 257 FFKAIFHAFVDE---DCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 257 ~~~~vl~~~~~~---~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
++-.. ...... -..++++.+++.|+| ||.+++.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 194 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence 96322 111111 124699999999999 6666653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.00 E-value=1.5e-06 Score=76.41 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=69.6
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC--------CCCCceEeeCCCCCCC-------CCccE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP--------DTDNLKFIAGDMFQSI-------PPADA 255 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--------~~~~v~~~~~d~~~~~-------p~~D~ 255 (359)
..++.+|||+.||+|.++...+... ..+++++|++. .++.++ ...+++++++|.++.+ ..||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3457899999999999998877652 34799999955 777665 2467899999996521 24999
Q ss_pred EEEc--------chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 256 FFFK--------AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 256 i~~~--------~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
|++- .-++.. ..+..++++.+.++|+| ||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~p---gG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSE---NGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 9973 111111 12345799999999999 77777655
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.96 E-value=1.6e-06 Score=72.35 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeec-ccccccCC-------CCCCceEeeCCCCCC----------CCCc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDL-PHVVPKVP-------DTDNLKFIAGDMFQS----------IPPA 253 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~d~~~~----------~p~~ 253 (359)
.++++|||||+++|.-+..+++..| +.+++.+|. ++..+.|+ -.++++++.+|..+. ...|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3579999999999999999999886 679999999 44666555 257899999998432 1249
Q ss_pred cEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 254 DAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 254 D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
|+|++-. ........++.+.+.|+| || ++|+|.+.
T Consensus 138 D~iFiDa-----~k~~y~~~~e~~~~ll~~---gG-iii~DNvl 172 (227)
T d1susa1 138 DFIFVDA-----DKDNYLNYHKRLIDLVKV---GG-VIGYDNTL 172 (227)
T ss_dssp SEEEECS-----CSTTHHHHHHHHHHHBCT---TC-CEEEETTT
T ss_pred eEEEecc-----chhhhHHHHHHHHhhcCC---Cc-EEEEccCC
Confidence 9999742 224456789999999999 55 55555443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.96 E-value=2.2e-06 Score=74.53 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=69.5
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC----------CCCCceEeeCCCCC----CCCCccEEE
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP----------DTDNLKFIAGDMFQ----SIPPADAFF 257 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------~~~~v~~~~~d~~~----~~p~~D~i~ 257 (359)
+.+.+||-||+|.|..+..+++..|..+++++|+ +.+++.++ ..+|++++.+|..+ .-..||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4578999999999999999998766679999999 55887665 25899999999854 223599999
Q ss_pred EcchhccCCc---hHHHHHHHHHHHhcccCCCCcEEEEE
Q 018205 258 FKAIFHAFVD---EDCLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 258 ~~~vl~~~~~---~~~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
+-..- .... --...+++.+++.|+| ||.++..
T Consensus 185 ~D~~d-p~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSD-PVGPAESLFGQSYYELLRDALKE---DGILSSQ 219 (312)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCCC-CCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence 74221 1111 1124689999999999 6665553
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.93 E-value=2.6e-06 Score=57.84 Aligned_cols=56 Identities=16% Similarity=0.379 Sum_probs=48.3
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
+.|++.+...++|+|+.|||+.+|+ +...+.|+|..|+..|+++++. +++|++++.
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~---~~st~~rll~tL~~~g~l~~~~--------~g~y~lG~~ 63 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK--------DKRYVPGYK 63 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT--------TSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC--------CCCEeecHH
Confidence 3466777765579999999999999 6899999999999999999985 688998874
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=2.3e-05 Score=62.73 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=73.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeecccccccCCCCCCceEeeCCCCCC-----------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPHVVPKVPDTDNLKFIAGDMFQS----------- 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~----------- 249 (359)
.++.+++. .+.+..+|||+||+.|.++..+.+.. +..+++++|+..+- .-+++.++.+|+.+.
T Consensus 11 ~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----ccCCceEeecccccchhhhhhhhhcc
Confidence 45667776 56788899999999999999988764 45789999985532 246789999999642
Q ss_pred CCCccEEEEcchhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEE
Q 018205 250 IPPADAFFFKAIFHAFVDED---------CLKILKRCREAIASRGDRGKVIII 293 (359)
Q Consensus 250 ~p~~D~i~~~~vl~~~~~~~---------~~~~L~~~~~~L~p~~~gG~lli~ 293 (359)
...+|+|++-....-..+.. +...+.-+.+.|++ ||.+++=
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~K 135 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVK 135 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEEE
Confidence 12499999865543322221 12456667789999 7777663
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=1.2e-05 Score=64.77 Aligned_cols=95 Identities=12% Similarity=0.189 Sum_probs=66.2
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC----CCCccEEEEcchh
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS----IPPADAFFFKAIF 262 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~----~p~~D~i~~~~vl 262 (359)
...+|||++||+|.++...+.+... +++.+|... +++.++ ...+++++.+|.++. ...||+|++.=-.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3579999999999999998887543 899999954 776554 256788999987541 2249999985322
Q ss_pred ccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 018205 263 HAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIV 296 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~ 296 (359)
......+++..+.+ +|++ +| ++++|..
T Consensus 122 ---~~~~~~~~l~~l~~~~~L~~---~~-iIiiE~~ 150 (183)
T d2fpoa1 122 ---RRGLLEETINLLEDNGWLAD---EA-LIYVESE 150 (183)
T ss_dssp ---STTTHHHHHHHHHHTTCEEE---EE-EEEEEEE
T ss_pred ---ccchHHHHHHHHHHCCCCCC---Ce-EEEEEec
Confidence 22334556777665 5888 44 5555543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=1.3e-05 Score=65.66 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc----ccccCC---CCCCceEeeCCCCCC--CCCccEEEEcchhcc
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH----VVPKVP---DTDNLKFIAGDMFQS--IPPADAFFFKAIFHA 264 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~----~~~~a~---~~~~v~~~~~d~~~~--~p~~D~i~~~~vl~~ 264 (359)
+..+|+|||+|.|.=+.-++-.+|+.+++.+|... .++.+. .-.++++++....+. ...||+|++..+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 35799999999999999999999999999999832 333322 346899999988552 2359999886653
Q ss_pred CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 265 FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 265 ~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
....++.-+...+++ +|.+++.-
T Consensus 143 ----~~~~ll~~~~~~l~~---~g~~~~~K 165 (207)
T d1jsxa_ 143 ----SLNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp ----SHHHHHHHHTTSEEE---EEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCC---CcEEEEEC
Confidence 124588888999999 88887754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.82 E-value=8.2e-05 Score=61.32 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=72.0
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCC-CeEEEeeccc-ccccCCCCCCceEeeCCCCCCC--CCccEEEE
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPG-IKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQSI--PPADAFFF 258 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~~--p~~D~i~~ 258 (359)
.+++.+. ..++.+|+|.|||+|.++..+.++.+. .+++++|+.+ .+..+ .+..+..+|++... ..||++++
T Consensus 10 ~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 10 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecc
Confidence 3444444 456789999999999999998877654 5799999954 55544 34577788886532 35999997
Q ss_pred cchhccCC---c------------------------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 259 KAIFHAFV---D------------------------EDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 259 ~~vl~~~~---~------------------------~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+--+.... . .-...++.++.+.|++ ||.+.++-+
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~p 145 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 145 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEEe
Confidence 64432110 0 0123578899999999 898877653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.69 E-value=2.4e-05 Score=62.58 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=79.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeec-ccccccCC--CCCCceEeeCCCCC--C------C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDL-PHVVPKVP--DTDNLKFIAGDMFQ--S------I 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~~~~v~~~~~d~~~--~------~ 250 (359)
+++++.+. ..+...++|..+|.|.++..++++ +.+++++|. |++++.++ ..+++.++.+++-+ . .
T Consensus 8 ~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 8 QEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence 67777776 567889999999999999999997 568999999 55777665 46789999998832 1 2
Q ss_pred CCccEEEEc-----chhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 PPADAFFFK-----AIFHAFVD--EDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p~~D~i~~~-----~vl~~~~~--~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
..+|.|++- +-+.+..+ ......|....+.|+| ||.++++...
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fh 133 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFH 133 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecc
Confidence 247877753 22222211 1234578899999999 8999987754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.65 E-value=2e-05 Score=63.26 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=72.7
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCCC----
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQS---- 249 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~~---- 249 (359)
+.+...+.. ...+.+|||+.||+|.++...+.+... +++.+|.+. +++.++ ..+++++..+|.++.
T Consensus 30 ealFn~l~~-~~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~ 107 (182)
T d2fhpa1 30 ESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF 107 (182)
T ss_dssp HHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHH-hcCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhh
Confidence 445555441 235789999999999999998888532 799999954 666654 245899999998541
Q ss_pred ---CCCccEEEEcchhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeecC
Q 018205 250 ---IPPADAFFFKAIFHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 250 ---~p~~D~i~~~~vl~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~~ 298 (359)
...||+|++-==. .......+|..+.+ +|++ +| ++|+|....
T Consensus 108 ~~~~~~fDlIflDPPY---~~~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~~ 154 (182)
T d2fhpa1 108 YEEKLQFDLVLLDPPY---AKQEIVSQLEKMLERQLLTN---EA-VIVCETDKT 154 (182)
T ss_dssp HHTTCCEEEEEECCCG---GGCCHHHHHHHHHHTTCEEE---EE-EEEEEEETT
T ss_pred cccCCCcceEEechhh---hhhHHHHHHHHHHHCCCCCC---CE-EEEEEcCCC
Confidence 1249999974221 12334567777765 6898 45 666675443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.58 E-value=2.6e-05 Score=68.79 Aligned_cols=100 Identities=10% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHC-----CCCeEEEeeccc-ccccCC-----CCCCceEeeCCCCCCCC--CccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAF-----PGIKCTVLDLPH-VVPKVP-----DTDNLKFIAGDMFQSIP--PADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~-~~~~a~-----~~~~v~~~~~d~~~~~p--~~D~i~~~ 259 (359)
.+..+|+|.+||+|.++..+.++. ++.+++|+|+.. +++.|+ ......+..+|.+...+ .||+|+++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 346789999999999998887642 445799999954 776665 25667788888766433 59999987
Q ss_pred chhccCCch----------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 260 AIFHAFVDE----------------DCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 260 ~vl~~~~~~----------------~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
--+...... -...++.++.+.|+| ||++.++-+
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~p 244 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 244 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEec
Confidence 433111111 112479999999999 898777554
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.58 E-value=0.00022 Score=59.11 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=66.4
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHH----CCCCeEEEeecc-cccccC-CCCCCceEeeCCCCCC-----C
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEA----FPGIKCTVLDLP-HVVPKV-PDTDNLKFIAGDMFQS-----I 250 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~~a-~~~~~v~~~~~d~~~~-----~ 250 (359)
+.++..+. +++|||+|++.|..+..++.. .++.+++++|+. ...... ....++++..+|..+. +
T Consensus 73 ~eli~~~K-----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l 147 (232)
T d2bm8a1 73 HDMLWELR-----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL 147 (232)
T ss_dssp HHHHHHHC-----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG
T ss_pred HHHHHHhC-----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHH
Confidence 34555443 789999999999866655432 367899999993 344333 3468999999997442 1
Q ss_pred C--CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 251 P--PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 251 p--~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
. .+|.|+.-. -|.. +....-+ .....|++ ||.++|-|.+
T Consensus 148 ~~~~~dlIfID~-~H~~--~~v~~~~-~~~~lLk~---GG~iIveD~i 188 (232)
T d2bm8a1 148 REMAHPLIFIDN-AHAN--TFNIMKW-AVDHLLEE---GDYFIIEDMI 188 (232)
T ss_dssp SSSCSSEEEEES-SCSS--HHHHHHH-HHHHTCCT---TCEEEECSCH
T ss_pred HhcCCCEEEEcC-Ccch--HHHHHHH-HHhcccCc---CCEEEEEcCC
Confidence 1 278777643 3543 2222233 35688998 7777775543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.53 E-value=0.00033 Score=57.82 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=67.9
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc---ccccCC---CCCCceEeeCCCCCCC-C-Cc
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH---VVPKVP---DTDNLKFIAGDMFQSI-P-PA 253 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~---~~~~a~---~~~~v~~~~~d~~~~~-p-~~ 253 (359)
..+.+++- +.+..+|+|+|||.|.++..++.+.+..++.++++-. ...... ..+-+++...+-.... + .+
T Consensus 56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 34555554 6677899999999999999999887666777777721 111111 1233355544332222 3 39
Q ss_pred cEEEEcchhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 254 DAFFFKAIFHAFVD-----EDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 254 D~i~~~~vl~~~~~-----~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
|+|+|-..-. -++ ....++|.-+.+.|+| ||.+++ -..-+
T Consensus 134 D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv-KVl~p 178 (257)
T d2p41a1 134 DTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSN---NTQFCV-KVLNP 178 (257)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE-EESCC
T ss_pred CEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHccc---CCEEEE-EECCC
Confidence 9999865422 222 2234677888899999 787655 44433
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.52 E-value=0.00012 Score=60.78 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=84.4
Q ss_pred CCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc----ccccCC---CCCCceEeeCCCCC-----CC-CCccEEEEc
Q 018205 193 QGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH----VVPKVP---DTDNLKFIAGDMFQ-----SI-PPADAFFFK 259 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~----~~~~a~---~~~~v~~~~~d~~~-----~~-p~~D~i~~~ 259 (359)
....+|+|||+|.|.-+.-++-.+|+.+++.+|... .++.+. .-.++.++...+.+ +. ..||+|++.
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 456799999999999999999999999999999832 333332 35678888776632 12 249999997
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhhhhhhhhcCCcccCHHHHHHHHHHcC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYDMLMMVAVRGSERTEKEWEKLFLDAG 339 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~ll~~aG 339 (359)
.+- ....++.-+...+++ +|.+++.-..... -..++.++.+...|
T Consensus 149 Ava------~l~~ll~~~~~~l~~---~g~~i~~KG~~~~--------------------------~El~~a~~~~~~~~ 193 (239)
T d1xdza_ 149 AVA------RLSVLSELCLPLVKK---NGLFVALKAASAE--------------------------EELNAGKKAITTLG 193 (239)
T ss_dssp CCS------CHHHHHHHHGGGEEE---EEEEEEEECC-CH--------------------------HHHHHHHHHHHHTT
T ss_pred hhh------CHHHHHHHHhhhccc---CCEEEEECCCChH--------------------------HHHHHHHHHHHHcC
Confidence 653 234589999999999 8888775421100 01234456677788
Q ss_pred CceeEEEEe
Q 018205 340 FSHFKITPV 348 (359)
Q Consensus 340 f~~~~~~~~ 348 (359)
++...+...
T Consensus 194 ~~~~~v~~~ 202 (239)
T d1xdza_ 194 GELENIHSF 202 (239)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 887776554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.0011 Score=58.58 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=63.5
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecc-cccccCC------CCCCceEeeCCCCCCCC----
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLP-HVVPKVP------DTDNLKFIAGDMFQSIP---- 251 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~------~~~~v~~~~~d~~~~~p---- 251 (359)
.+.+.+. ..+..+|||+-||+|.++..|+++ ..+++++|.. ..++.|+ .-.+++++.+|..+.++
T Consensus 203 ~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 203 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 3444444 456789999999999999999886 4579999994 4777666 25688999998855332
Q ss_pred ---CccEEEEcchhccCCchHHHHHHHHHHHhccc
Q 018205 252 ---PADAFFFKAIFHAFVDEDCLKILKRCREAIAS 283 (359)
Q Consensus 252 ---~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p 283 (359)
.+|+|++ +-|+.-+.++++.+.+. +|
T Consensus 279 ~~~~~d~vil-----DPPR~G~~~~~~~l~~~-~~ 307 (358)
T d1uwva2 279 AKNGFDKVLL-----DPARAGAAGVMQQIIKL-EP 307 (358)
T ss_dssp GTTCCSEEEE-----CCCTTCCHHHHHHHHHH-CC
T ss_pred hhccCceEEe-----CCCCccHHHHHHHHHHc-CC
Confidence 3898876 33333333466666654 55
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00018 Score=61.34 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=54.1
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------CCCCceEeeCCCCC-CCCC
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------DTDNLKFIAGDMFQ-SIPP 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~~~~v~~~~~d~~~-~~p~ 252 (359)
+.+++... ..+..+|||||+|.|.++..|+++. .+++++|+.. +++..+ ...+++++.+|+++ +.|.
T Consensus 11 ~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 11 NSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 34555555 5667899999999999999999984 4799999844 554433 13689999999977 5565
Q ss_pred ccEEEE
Q 018205 253 ADAFFF 258 (359)
Q Consensus 253 ~D~i~~ 258 (359)
.+.|+.
T Consensus 87 ~~~vV~ 92 (278)
T d1zq9a1 87 FDTCVA 92 (278)
T ss_dssp CSEEEE
T ss_pred hhhhhc
Confidence 555553
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.17 E-value=0.0018 Score=55.53 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=79.1
Q ss_pred HHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccccC---------CCCCCceEee
Q 018205 173 AMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVPKV---------PDTDNLKFIA 243 (359)
Q Consensus 173 ~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a---------~~~~~v~~~~ 243 (359)
.+...+++.+..+..+- -.+...|+.+|||--.....+ ...++++++-+|.|++++.- ....+..++.
T Consensus 70 ~~~~Rtr~~D~~~~~~~--~~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~ 146 (297)
T d2uyoa1 70 YQAVRTNFFDTYFNNAV--IDGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVP 146 (297)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHH--hhCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEec
Confidence 34444444433333332 245678889999988877665 33568899999998876521 1245668888
Q ss_pred CCCCCCCC------Ccc-----EEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 244 GDMFQSIP------PAD-----AFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 244 ~d~~~~~p------~~D-----~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
.|+.++.+ +|| ++++-.++++++.++..++|+.+.+...| |+ .+++|...
T Consensus 147 ~Dl~~~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS-~l~~d~~~ 207 (297)
T d2uyoa1 147 IDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GS-RIAVETSP 207 (297)
T ss_dssp CCTTSCHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TC-EEEEECCC
T ss_pred ccccchHHHHHHhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCC---CC-EEEEEecc
Confidence 88854321 233 56677789999999999999999999988 54 55556443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00014 Score=61.14 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=56.8
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC----CCCCceEeeCCCCC-CCCC---
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP----DTDNLKFIAGDMFQ-SIPP--- 252 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~----~~~~v~~~~~d~~~-~~p~--- 252 (359)
+.+++... ..+...|||||||.|.++..|++.. .+++++|+.. +++..+ ..++++++.+|+++ +.+.
T Consensus 11 ~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~~ 86 (252)
T d1qyra_ 11 DSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccccc
Confidence 35555555 5678899999999999999999874 5799999954 555432 35789999999965 2221
Q ss_pred ---ccEEEEcchhccCC
Q 018205 253 ---ADAFFFKAIFHAFV 266 (359)
Q Consensus 253 ---~D~i~~~~vl~~~~ 266 (359)
--+.+..+.=++.+
T Consensus 87 ~~~~~~~vvgNlPY~Is 103 (252)
T d1qyra_ 87 KMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp HHTSCEEEEEECCTTTH
T ss_pred ccCCCeEEEecchHHHH
Confidence 12455566655554
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.90 E-value=0.00018 Score=50.58 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++|.--.++.|+..|.+ ++.++.||++.+|+ .+..+.+.|+.|...|++...+
T Consensus 12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~---s~~~vS~HL~~L~~~glv~~~r 65 (94)
T d1r1ua_ 12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 65 (94)
T ss_dssp HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCceEEEE
Confidence 445666677888888887 79999999999999 6899999999999999998776
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.87 E-value=0.00025 Score=50.29 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 29 STSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 29 ~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++|.--.++.|+..|.. ++.++.||++.+|+ .+..+...|+.|...|++...+
T Consensus 17 ~kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~i---s~stvS~HL~~L~~aglV~~~r 70 (98)
T d1r1ta_ 17 FAVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 70 (98)
T ss_dssp HHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 356666778888888876 79999999999999 6899999999999999998776
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.56 E-value=0.00057 Score=49.33 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 28 SSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+++|..-.++.|+..|... ++.++.||++.+|+ .+..+...|+.|...|++....
T Consensus 24 ~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~---s~s~vS~HL~~L~~aGlv~~~r 79 (108)
T d1u2wa1 24 ILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRK 79 (108)
T ss_dssp HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHcc---ChhHHHHHHHHHHHCCeeEEEE
Confidence 45677788889999988642 78999999999999 6899999999999999999876
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.44 E-value=0.0015 Score=51.98 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC--------CCCCceEeeCCCCC----C--CCCccEEEE
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP--------DTDNLKFIAGDMFQ----S--IPPADAFFF 258 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--------~~~~v~~~~~d~~~----~--~p~~D~i~~ 258 (359)
...+|||+-||+|.++...+.+... +++.+|.+. .++..+ ......+...|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3579999999999999999988533 899999944 554333 23356666666532 1 224999987
Q ss_pred cchhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeecC
Q 018205 259 KAIFHAFVDEDCLKILKRCRE--AIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~--~L~p~~~gG~lli~~~~~~ 298 (359)
-==. .......+|+.+.+ +|++ +.++++|....
T Consensus 122 DPPY---~~~~~~~~l~~l~~~~~L~~----~~liiiE~~~~ 156 (183)
T d2ifta1 122 DPPF---HFNLAEQAISLLCENNWLKP----NALIYVETEKD 156 (183)
T ss_dssp CCCS---SSCHHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred chhH---hhhhHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence 4221 12334557777765 6888 55666675543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.41 E-value=0.0026 Score=57.58 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=71.8
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCC-------------CCeEEEeecc-cccccCC--------CCCCce
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFP-------------GIKCTVLDLP-HVVPKVP--------DTDNLK 240 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~~-~~~~~a~--------~~~~v~ 240 (359)
.+++.+. .....+|+|-.||+|.++..+.+... ...+.|+|+. .+...|+ ......
T Consensus 153 ~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~ 230 (425)
T d2okca1 153 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 230 (425)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred hhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccce
Confidence 3444444 34568999999999999988776532 1358899984 3555443 234567
Q ss_pred EeeCCCCCCCC--CccEEEEcchhccC---------------CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 241 FIAGDMFQSIP--PADAFFFKAIFHAF---------------VDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 241 ~~~~d~~~~~p--~~D~i~~~~vl~~~---------------~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
+..+|.+...+ .||+|+++=-+..- .......++.++.+.|++ ||++.++-+
T Consensus 231 i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~p 299 (425)
T d2okca1 231 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 299 (425)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred eecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEec
Confidence 88888876433 49999976333110 011123599999999999 888877654
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.35 E-value=0.00083 Score=54.03 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=51.4
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
+|..-.+..|+..|.+ +|.|+.|||+.+|+ ++..+++.|+.|...|+++........+-....|+++..+.
T Consensus 11 ~l~~~~R~~Il~~L~~--~~~~~~ela~~l~~---s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 11 VLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 3444456667777776 79999999999999 68999999999999999986542211111123577777654
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0018 Score=41.56 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=42.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCce-eeecccccccCccceEecc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFF-STANVQSAQQQEEEAYALT 102 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll-~~~~~~~~~~~~~~~~~~t 102 (359)
++.|+..|.+ +...|.+|||+.+|+ ....+.+-++.|...|+. +... +..|++.
T Consensus 7 ~~~iL~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~i~~L~~~G~~I~~~~--------g~GY~L~ 61 (63)
T d1biaa1 7 PLKLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP--------GKGYSLP 61 (63)
T ss_dssp HHHHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET--------TTEEECS
T ss_pred HHHHHHHHHH-CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCcEEEeC--------CCeEEeC
Confidence 4457777766 478999999999999 689999999999999984 4443 3468764
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.22 E-value=0.0014 Score=52.47 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 28 SSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 28 ~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
...+|..-.+..|+..|.+ +|+|+.|||+.+|+ ++..+.+.|+.|...|+++...
T Consensus 12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~---s~~~v~~hl~~L~~~glv~~~~ 66 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVKR 66 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3566777788889999976 79999999999999 6899999999999999997553
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.19 E-value=0.0026 Score=41.07 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=43.7
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCc-eeeecccccccCccceEeccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGF-FSTANVQSAQQQEEEAYALTL 103 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gl-l~~~~~~~~~~~~~~~~~~t~ 103 (359)
...|+..|.+..+++|+++||+.+++ ..+.++|-++.|.+.|+ +... .+.|.+.+
T Consensus 9 ~~~Il~~L~~~~~~vs~~~La~~l~V---S~~TI~rdi~~L~~~G~~I~~~---------~gGY~L~~ 64 (65)
T d1j5ya1 9 LKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE---------TTEEECCT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEEe---------CCCEEeCC
Confidence 34567777654468999999999999 68999999999999997 5555 46888753
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.032 Score=48.16 Aligned_cols=147 Identities=11% Similarity=0.138 Sum_probs=97.8
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeecccccc-cCC--------------------------CCCCceEeeCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPHVVP-KVP--------------------------DTDNLKFIAGDM 246 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~-~a~--------------------------~~~~v~~~~~d~ 246 (359)
+...|+-+|||.-.....+...+|++.++=+|.|++++ +.+ ..++..++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 34689999999999998898889998899999888554 110 146788889998
Q ss_pred CCC--C-----CC-----ccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCCCCcchHHHHHHHhhh
Q 018205 247 FQS--I-----PP-----ADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINEKKEDAQLTEAKLLYD 314 (359)
Q Consensus 247 ~~~--~-----p~-----~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
.+. . .+ .=++++=.+|.+++.++..++|+.+.+..+. +.+++.|++.+....++ ++.. +..+
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~p~D~-FG~~-M~~n 249 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQPNDR-FGAI-MQSN 249 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCSTTCC-HHHH-HHHH
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCCCCCh-HHHH-HHHH
Confidence 541 1 11 2367888999999999999999999999875 88999999876544342 3221 1111
Q ss_pred hhhh-h---hcCCcccCHHHHHHHHHHcCCceeEEEEe
Q 018205 315 MLMM-V---AVRGSERTEKEWEKLFLDAGFSHFKITPV 348 (359)
Q Consensus 315 ~~~~-~---~~~g~~~t~~~~~~ll~~aGf~~~~~~~~ 348 (359)
+... . .+-....|.+...+-+ .||..+....+
T Consensus 250 l~~~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm 285 (328)
T d1rjda_ 250 LKESRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDM 285 (328)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEH
T ss_pred HHHhcCCCCCccccCCCHHHHHHHH--hcCCccchhhH
Confidence 1100 0 0111234666665544 37776655544
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.73 E-value=0.0013 Score=46.71 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=51.4
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccC-ccceEeccccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQ-EEEAYALTLTSKL 107 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~-~~~~~~~t~~~~~ 107 (359)
++..-.++.|+..|... +++|+.|||+.+++ ....+.+.|+.|+..|+++..... .+ ..-.|++|+.++.
T Consensus 12 ~l~~p~r~~IL~~L~~~-~~~~~~eLa~~l~i---s~~~vs~~l~~L~~~glV~~~~~~---~d~r~~~~~LT~~G~~ 82 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI---ADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC---SSSCEEEEEECHHHHH
T ss_pred hcCCHHHHHHHHHhccC-CCeeHHHHHHHHhh---ccccccHHHHHHhhhceeEEEEcC---cCCccccccCCHHHHH
Confidence 33344567777888553 69999999999999 689999999999999999866310 01 0123888887653
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.70 E-value=0.19 Score=43.55 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=89.9
Q ss_pred CCCCeEEEeCCCcchHH--------HHHHHH--------CCCCeEEEeeccc--c---cccCCC----CC--CceEeeCC
Q 018205 193 QGLGSLVDVGGGTGSFA--------RIISEA--------FPGIKCTVLDLPH--V---VPKVPD----TD--NLKFIAGD 245 (359)
Q Consensus 193 ~~~~~vlDvG~G~G~~~--------~~l~~~--------~p~~~~~~~D~~~--~---~~~a~~----~~--~v~~~~~d 245 (359)
++..+|.|+||.+|..+ ..+.++ .|..++..-|+|. . ...... .. -+.-+.+.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 44578999999999754 233222 3566888889964 2 222211 11 13456788
Q ss_pred CCCC-CC--CccEEEEcchhccCCc-------------------------------hHHHHHHHHHHHhcccCCCCcEEE
Q 018205 246 MFQS-IP--PADAFFFKAIFHAFVD-------------------------------EDCLKILKRCREAIASRGDRGKVI 291 (359)
Q Consensus 246 ~~~~-~p--~~D~i~~~~vl~~~~~-------------------------------~~~~~~L~~~~~~L~p~~~gG~ll 291 (359)
|+.. +| ..++++++..+|.++. .+...+|+.=.+=|.| ||+++
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mv 206 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEE
Confidence 8773 66 3999999999998742 1333577776777888 99999
Q ss_pred EEeeecCCCCcchH-----HHH-HHHhhhhhhhhh----------cCCcccCHHHHHHHHHHcC-CceeEE
Q 018205 292 IIDIVINEKKEDAQ-----LTE-AKLLYDMLMMVA----------VRGSERTEKEWEKLFLDAG-FSHFKI 345 (359)
Q Consensus 292 i~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~----------~~g~~~t~~~~~~ll~~aG-f~~~~~ 345 (359)
+.-...++...... +.. ...+.++..... ..-..+|.+|+++.+++.| |.+.++
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 98877665432110 000 111222221110 0123579999999999987 444444
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.62 E-value=0.0034 Score=41.30 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=40.3
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|+..|... +++|..|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 8 ~~~Il~~l~~~-g~~sr~eLa~~~gl---S~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 8 AGRVYKLIDQK-GPISRIDLSKESEL---APASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 34567777764 79999999999999 6899999999999999998763
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.0049 Score=39.26 Aligned_cols=44 Identities=16% Similarity=0.321 Sum_probs=39.4
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|+..|.+ +|+|..|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 3 ~Il~~i~~--~pisr~eLa~~~gl---s~~TVs~~v~~L~~~GlV~e~~ 46 (62)
T d2hoea1 3 RILKRIMK--SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 46 (62)
T ss_dssp CSHHHHHH--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC
Confidence 46778877 79999999999999 6899999999999999998764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.46 E-value=0.037 Score=47.42 Aligned_cols=107 Identities=8% Similarity=0.128 Sum_probs=70.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCC-CCeEEEeeccc-ccccCC------CCCCceEeeCCCCC--C-CCCccEEEE--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFP-GIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQ--S-IPPADAFFF-- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~--~-~p~~D~i~~-- 258 (359)
..++.+|||+.+|.|.=+..++.... +..+++.|... -++..+ ...++.....|... . ...||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 35678999999999999888888765 56899999943 333322 24567777777643 1 234898884
Q ss_pred --c--chh-------ccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 259 --K--AIF-------HAFVDEDC-------LKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 259 --~--~vl-------~~~~~~~~-------~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
+ .++ ..+..++. .++|+++.+.|+| ||.|+..........
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl~~eE 251 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSLEPEE 251 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCCGGG
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccCChHh
Confidence 1 111 12222221 3688999999999 888777776655443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.051 Score=45.83 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=70.2
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC---CC-CccEEEE--
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS---IP-PADAFFF-- 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~---~p-~~D~i~~-- 258 (359)
..+..+|||+.+|.|.=+..+++...+.+++++|++. -++..+ ....+.....|.... .+ .||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 4567899999999999999999988888999999943 333222 123344444444221 22 4999983
Q ss_pred --c--c-------hhccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeecCCCC
Q 018205 259 --K--A-------IFHAFVDED-------CLKILKRCREAIASRGDRGKVIIIDIVINEKK 301 (359)
Q Consensus 259 --~--~-------vl~~~~~~~-------~~~~L~~~~~~L~p~~~gG~lli~~~~~~~~~ 301 (359)
+ . +...+...+ -.++|+++.+.|+| ||.|+..........
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~~~~E 237 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSVLPEE 237 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCCCGGG
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecCchhh
Confidence 2 2 222233222 23688899999999 888887776665443
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=95.34 E-value=0.0062 Score=39.01 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=34.2
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|.++.||++.+|+ ++..++.+|+.|...|.+.+..
T Consensus 22 ~PP~vrdl~~~l~~---~e~~~~~lL~~l~~~G~lvkI~ 57 (64)
T d1lvaa3 22 QPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN 57 (64)
T ss_dssp SCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 69999999999999 7899999999999999999986
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=95.07 E-value=0.0048 Score=42.13 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=41.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEecccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLF 108 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l 108 (359)
+++|..+||+.+++ ....+.++|+.|+..|++++.. ++ .+++|+.+..+
T Consensus 20 ~~lt~~eLa~~l~i---~~~~vs~~l~~Le~~GlV~r~~--------D~R~~~i~LT~~G~~~ 71 (85)
T d3ctaa1 20 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTV--------TKRGQILNITEKGLDV 71 (85)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE--------ETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeec--------ccccccceECHHHHHH
Confidence 68999999999999 6899999999999999999864 33 36777766543
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.012 Score=50.77 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC---CCCCceEeeCCCCC
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP---DTDNLKFIAGDMFQ 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~---~~~~v~~~~~d~~~ 248 (359)
...+|||||+|.|.++..|++...--+++++|... ..+..+ ..++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 46789999999999999999874223899999843 444332 35789999999863
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=94.87 E-value=0.01 Score=44.47 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLT 104 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~ 104 (359)
.+.|.++||+.+++ ++..++++|+.|...|+|+..++ .|.|++...
T Consensus 22 ~~vss~~IA~~~~i---~~~~l~kil~~L~~aGlv~S~rG-------~GG~~L~~~ 67 (138)
T d1ylfa1 22 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-------PGGAGLLKD 67 (138)
T ss_dssp GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeecC-------CCCceecCC
Confidence 58999999999999 78999999999999999987763 577887653
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=94.77 E-value=0.014 Score=43.01 Aligned_cols=36 Identities=6% Similarity=0.158 Sum_probs=33.5
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++|.++||+.+++ ++..++++|+.|...|+++..+
T Consensus 17 ~~~ss~~IA~~~~~---~~~~v~kIl~~L~~aglV~s~r 52 (127)
T d1xd7a_ 17 EKTSSEIIADSVNT---NPVVVRRMISLLKKADILTSRA 52 (127)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS
T ss_pred CCCCHHHHHHHhCc---CHHHHHHHHHHHHHhCcccccC
Confidence 68999999999999 6799999999999999998765
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.77 E-value=0.0086 Score=41.10 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=42.8
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
+.+...|...+++ +-..+...|+.|+..|+++.. ++.|.+|+.+..++
T Consensus 18 g~~kT~i~~~aNL---s~~~~~kyl~~L~~~GLI~~~---------~~~Y~iT~kG~~~L 65 (90)
T d1r7ja_ 18 GSPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELL 65 (90)
T ss_dssp CBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCCccHHHHHcCC---CHHHHHHHHHHHHHCCCeeec---------CCEEEECccHHHHH
Confidence 5678999999999 679999999999999999877 58999999987655
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.011 Score=38.61 Aligned_cols=47 Identities=9% Similarity=0.185 Sum_probs=40.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..|+..|... +++|-.|||+.+|+ ....+.++++.|.+.|++.+.+
T Consensus 7 ~~~Il~~i~~~-g~~sr~eLa~~~gL---S~~Tvs~iv~~L~~~glv~e~g 53 (70)
T d1z6ra1 7 AGAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 53 (70)
T ss_dssp HHHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 34477778774 79999999999999 6899999999999999998763
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=94.59 E-value=0.0048 Score=44.26 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++|+|+.+||+.+|+ +...+.+.++.|...|++.+..
T Consensus 34 ~~~~t~~eLa~~~~i---~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 34 EKPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp CSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCc---cHhHHHHHHHHHHHCCCEEEee
Confidence 378999999999999 6899999999999999998764
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.26 E-value=0.011 Score=35.18 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=45.4
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEec
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYAL 101 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~ 101 (359)
|-+|+..|.++|+|....+|++++++ +...|.++|..|...+-+...+ ++.|++
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV---pkk~lNqVL~rlkke~kVsl~~--------patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPE--------PATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE--------TTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC---CHHHHHHHHHHHHhccccccCC--------CccccC
Confidence 44567788887899999999999999 6889999999999988888776 567764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.14 E-value=0.045 Score=42.12 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=56.1
Q ss_pred eEEEeCCCc--chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCC-CCCCccEEEEcchhccCCchHHHH
Q 018205 197 SLVDVGGGT--GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQ-SIPPADAFFFKAIFHAFVDEDCLK 272 (359)
Q Consensus 197 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~-~~p~~D~i~~~~vl~~~~~~~~~~ 272 (359)
+|+=||||. |.++..|.+..+..+++++|.. +.++.+++...+.....+... .....|+|++.- +......
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 588899986 3466777777777899999994 477766644434333333322 223579888643 4456778
Q ss_pred HHHHHHHhccc
Q 018205 273 ILKRCREAIAS 283 (359)
Q Consensus 273 ~L~~~~~~L~p 283 (359)
++.++...+++
T Consensus 78 vl~~l~~~~~~ 88 (171)
T d2g5ca2 78 IAKKLSYILSE 88 (171)
T ss_dssp HHHHHHHHSCT
T ss_pred hhhhhhccccc
Confidence 99999999987
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.99 E-value=0.032 Score=41.70 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=47.3
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEecccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLF 108 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l 108 (359)
.++.++..|... +++|+.+||+.+++ +...+.+.++.|+..|++++... +.|. .-.+.+|+.++.+
T Consensus 37 ~q~~vL~~l~~~-~~~t~~~la~~l~~---~~~~vsr~l~~L~~~G~v~r~~~---~~D~R~~~l~lT~~G~~~ 103 (141)
T d1lnwa_ 37 PDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERN---PSDQRSFQLFLTDEGLAI 103 (141)
T ss_dssp HHHHHHHHHHSS-TTCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEC---SSSSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCc---cHhHHHHHHHHHHHhhceeeecc---CCCCcchhhccCHHHHHH
Confidence 344455566553 57999999999999 78999999999999999987752 1111 1236677766533
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=93.89 E-value=0.038 Score=39.20 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccc
Q 018205 11 EMFEAQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQ 89 (359)
Q Consensus 11 ~~~~~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~ 89 (359)
+..-+....++++.+-|...+|... .. |+....||.+.+ |+ ....|.+=|+.|++.|++.+....
T Consensus 4 d~~c~i~~al~iig~kW~~~Il~~L---------~~--g~~RF~el~~~l~gI---S~~~Ls~rLk~L~~~glv~R~~~~ 69 (108)
T d1z7ua1 4 DKQTSINLALSTINGKWKLSLMDEL---------FQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFN 69 (108)
T ss_dssp CHHHHHHHHHHTTCSTTHHHHHHHH---------HH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred CcCCcHHHHHHHHcCCCHHHHHHHH---------Hc--CCCCHHHHHHHCcCC---ChhHHHHHHHHHHHCCcceeeccC
Confidence 3445667778888888887776653 23 688999999998 78 679999999999999999886421
Q ss_pred ccccCccceEeccccccccc
Q 018205 90 SAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 90 ~~~~~~~~~~~~t~~~~~l~ 109 (359)
..| ..-.|.+|+.++.+.
T Consensus 70 ~~p--~~veY~LT~~G~~L~ 87 (108)
T d1z7ua1 70 ELP--PRVEYTLTPEGYALY 87 (108)
T ss_dssp CSS--CEEEEEECHHHHHHH
T ss_pred CCc--ceehhhhchhHHHHH
Confidence 100 012499999887665
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.86 E-value=0.017 Score=43.55 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=48.4
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
.++.++..|...++++|+.+||+.+++ +...+.++++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 35 ~q~~vL~~L~~~~g~~t~~~La~~~~~---~~~~vs~~i~~L~~~glv~r~~~~---~DrR~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 35 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP---QDGRRTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC---------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeeeCc---cchhHHHhccCHHHHHHH
Confidence 345555666544468999999999999 689999999999999999877421 110 12377777766443
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.50 E-value=0.014 Score=41.66 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=37.0
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
.++..|... ++.|+.|||+.+|+ +...+.+.|+-|...|++.+.
T Consensus 24 ~v~~~L~~~-g~~t~~eia~~~~i---~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 24 RIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhc-CCCCHHHHHHHhCC---CcchHHHHHHHHHhCCCEEEE
Confidence 344455443 79999999999999 789999999999999999865
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.40 E-value=0.043 Score=37.96 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=53.4
Q ss_pred HHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeecccccccCccc
Q 018205 19 LFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE 97 (359)
Q Consensus 19 l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~ 97 (359)
.++++.+-|...+|... .. |+..+.||.+.+ |+ ....|.+=|+.|++.|++++......| ..-
T Consensus 4 ~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gi---s~~~Ls~rLk~Le~~glv~r~~~~~~p--~~v 67 (95)
T d2hzta1 4 TLEVIGGKWKCVILCHL---------TH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVP--PKV 67 (95)
T ss_dssp HHHHHCSTTHHHHHHHH---------TT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSS--CEE
T ss_pred HHHHHcCCCHHHHHHHH---------Hc--CCCCHHHHHHHhhcC---ChhHHHHHHHHHHHhHHHhheeccccc--cch
Confidence 45555666665555542 23 689999999997 99 679999999999999999977421100 012
Q ss_pred eEeccccccccc
Q 018205 98 AYALTLTSKLFL 109 (359)
Q Consensus 98 ~~~~t~~~~~l~ 109 (359)
.|++|+.+..+.
T Consensus 68 eY~LT~~G~~L~ 79 (95)
T d2hzta1 68 EYELSEYGRSLE 79 (95)
T ss_dssp EEEECTTGGGGH
T ss_pred hhhhhhhHHHHH
Confidence 499999887665
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=93.08 E-value=0.048 Score=40.68 Aligned_cols=62 Identities=11% Similarity=0.243 Sum_probs=47.0
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++..|... ++.|+.+||+.+++ +...+.+.++.|+..|++++.... .+. .+.+|+.++.+.
T Consensus 39 ~iL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~l~~L~~~glv~r~~~~-----~D~R~~~v~lT~~G~~~~ 103 (143)
T d1s3ja_ 39 FVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNT-----KDRRVIDLSLTDEGDIKF 103 (143)
T ss_dssp HHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS-----SCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHhhhheeeeec-----CCCCceEEEECHHHHHHH
Confidence 345556553 68999999999999 689999999999999999876421 122 377787776544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.06 E-value=0.058 Score=41.27 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=54.4
Q ss_pred CeEEEeCCCc--chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCCCCCCccEEEEcchhccCCchHHHH
Q 018205 196 GSLVDVGGGT--GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQSIPPADAFFFKAIFHAFVDEDCLK 272 (359)
Q Consensus 196 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~~~p~~D~i~~~~vl~~~~~~~~~~ 272 (359)
++|.=||+|. +.++..|.++ +.++++.|.. +.++.+.+...+.....+. +....+|+|++. .+.....+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~-~~~~~~DiIila-----vp~~~~~~ 72 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAGQDL-SLLQTAKIIFLC-----TPIQLILP 72 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEESCG-GGGTTCSEEEEC-----SCHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceeeeec-cccccccccccc-----CcHhhhhh
Confidence 3677788874 3455666555 6789999994 4666555333232222222 445569999863 35567788
Q ss_pred HHHHHHHhcccCCCCcEEEE
Q 018205 273 ILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 273 ~L~~~~~~L~p~~~gG~lli 292 (359)
+++++...+++ +.+++
T Consensus 73 vl~~l~~~l~~----~~iv~ 88 (165)
T d2f1ka2 73 TLEKLIPHLSP----TAIVT 88 (165)
T ss_dssp HHHHHGGGSCT----TCEEE
T ss_pred hhhhhhhhccc----cccee
Confidence 99999999987 55554
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=92.81 E-value=0.059 Score=38.59 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+....++++.+-|...+|.. |.. |+....||.+.+ |+ ..+.|.+=|+.|++.|++++......|
T Consensus 13 pv~~~l~~ig~kW~l~Il~~---------L~~--g~~RF~el~~~l~gi---s~~~Ls~rL~~Le~~glv~R~~~~~~p- 77 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRKMGGV---SEKMLAQSLQALEQDGFLNRVSYPVVP- 77 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSS-
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hhc--CCCCHHHHHHHcccc---chhHHHHHHHHHHHHHHHhhcccCCCC-
Confidence 35678899999998777754 223 688999999999 78 678899999999999999877421000
Q ss_pred CccceEeccccccccc
Q 018205 94 QEEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~ 109 (359)
..-.|.+|+.++.|.
T Consensus 78 -~~veY~LT~~G~~L~ 92 (114)
T d1yyva1 78 -PHVEYSLTPLGEQVS 92 (114)
T ss_dssp -CEEEEEECHHHHHHH
T ss_pred -chhHhHhhHhHHHHH
Confidence 013499999887665
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.80 E-value=0.05 Score=47.75 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=64.4
Q ss_pred CCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCCC---------------------CCCceEeeCCCCC---
Q 018205 194 GLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVPD---------------------TDNLKFIAGDMFQ--- 248 (359)
Q Consensus 194 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~---------------------~~~v~~~~~d~~~--- 248 (359)
+..+|||..||+|..++..+...+..+++..|++. .++.+++ ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 36899999999999999888877767899999954 7665541 1234555566521
Q ss_pred CCC-CccEEEEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 249 SIP-PADAFFFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 249 ~~p-~~D~i~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
... .||+|.+-- +.-+ ..+|..+.++++. ||.|.|..
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~---~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKR---RGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhcc---CCEEEEEe
Confidence 122 499988643 4433 3499999999998 66666643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.72 E-value=0.52 Score=35.64 Aligned_cols=94 Identities=10% Similarity=0.122 Sum_probs=59.6
Q ss_pred cCCCCeEEEeCCC-cchHHHHHHHHCCCCeEEEeeccc-ccccCCCCC-CceEeeCCCCCC-----------CC-CccEE
Q 018205 192 FQGLGSLVDVGGG-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTD-NLKFIAGDMFQS-----------IP-PADAF 256 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~-~v~~~~~d~~~~-----------~p-~~D~i 256 (359)
..+..+|+-+||| .|.++..+++.. +++++++|..+ -++.|++.. ...+..-+..++ .+ ++|+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667899999988 577778888776 67999999843 555555321 122221111111 12 38888
Q ss_pred EEcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 257 FFKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 257 ~~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
+-.- .. ...+..+.++++| +|+++++....
T Consensus 103 id~~-----g~---~~~~~~a~~~~~~---~G~iv~~G~~~ 132 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITRT---GGTLMLVGMGS 132 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSCT---TCEEEECSCCS
T ss_pred eecC-----CC---hHHHHHHHHHHhc---CCceEEEecCC
Confidence 7432 11 2378888899999 89999877443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=0.089 Score=48.41 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=65.3
Q ss_pred HHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC----C--------------CCeEEEeec-ccccccCC--------
Q 018205 182 NLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF----P--------------GIKCTVLDL-PHVVPKVP-------- 234 (359)
Q Consensus 182 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~-------- 234 (359)
+.+++.+. .....+|+|-.||+|.++....+.. . ...++|+|+ +.+...|.
T Consensus 154 ~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 154 KTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred Hhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 33444444 3446799999999999998765532 1 125899998 43554443
Q ss_pred C---CCCceEeeCCCCC----CCCCccEEEEcchhcc-------------CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 018205 235 D---TDNLKFIAGDMFQ----SIPPADAFFFKAIFHA-------------FVDEDCLKILKRCREAIASRGDRGKVIIID 294 (359)
Q Consensus 235 ~---~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~-------------~~~~~~~~~L~~~~~~L~p~~~gG~lli~~ 294 (359)
. ...-.+..++.+. ..+.||+|+++==+-. -.+.+ ..+++++.+.|++ ||++.++-
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~---gGr~aiIl 307 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHP---GGRAAVVV 307 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccc---cCcEEEEE
Confidence 0 1122344455543 1345999997632210 11122 3589999999999 89888865
Q ss_pred e
Q 018205 295 I 295 (359)
Q Consensus 295 ~ 295 (359)
+
T Consensus 308 P 308 (524)
T d2ar0a1 308 P 308 (524)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.06 Score=34.92 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|-|.|+.||++.+|+. ....+.+.|+.|+..|+|++..
T Consensus 22 G~~Ps~rei~~~~g~~--S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFR--SPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp SSCCCHHHHHHHTTCS--SHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHcCCC--CHHHHHHHHHHHHHCcCeecCC
Confidence 4699999999999995 5678999999999999999873
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.51 E-value=0.2 Score=38.57 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=61.5
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEee---CCCCC-------CCCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIA---GDMFQ-------SIPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~---~d~~~-------~~p~~D~i~~~ 259 (359)
.++..+||=+|||. |.++..+++..-..++++.|.++ -.+.|++..--.++. .|-.. ...++|+++-+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 56778999999997 88899999988555788999854 555555432222222 12100 01248888742
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDR-GKVIIIDIV 296 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~g-G~lli~~~~ 296 (359)
- .. ...+.+..+.+++ + |+++++-..
T Consensus 106 ~-----G~---~~~~~~a~~~~~~---g~G~~v~vG~~ 132 (174)
T d1e3ia2 106 A-----GT---AQTLKAAVDCTVL---GWGSCTVVGAK 132 (174)
T ss_dssp S-----CC---HHHHHHHHHTBCT---TTCEEEECCCS
T ss_pred c-----cc---chHHHHHHHHhhc---CCeEEEecCCC
Confidence 2 22 2478899999998 6 888887643
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=92.42 E-value=0.034 Score=41.08 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=48.0
Q ss_pred hcCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 37 ELDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 37 ~lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++.++..|... ++++|..+||+.+++ +...+.++++.|+..|++++... +.|. .-.+.+|+.++.+.
T Consensus 31 q~~vL~~l~~~~~~~it~~ela~~~~~---~~~~vs~~l~~L~~~g~v~r~~~---~~D~R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 31 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVS---GKDSRQKCLKLTKKANKLE 99 (135)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---SSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHCc---CHhHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhcccHHHHHHH
Confidence 34444555543 357999999999999 78999999999999999987741 1111 12488888776554
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.31 E-value=0.031 Score=42.12 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=38.6
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
..|+..|...++|+|+.|||+.+|+ +...+.+.++.|...|++.+..
T Consensus 29 ~~i~~~L~~~~~plt~~ela~~l~v---sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 29 GAVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCEEEEE
Confidence 3445555443478999999999999 6899999999999999998763
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.22 E-value=0.026 Score=35.37 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=38.2
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|...|.+ ++..|+.+||+.+|+ ++..+.+-++.|...|++..-
T Consensus 5 D~kIl~~L~~-n~r~s~~~lA~~~gl---s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d1i1ga1 5 DKIILEILEK-DARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 50 (60)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 3456667766 479999999999999 678899999999999999643
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=92.17 E-value=0.018 Score=43.04 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=49.2
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.+..++..|... ++.|+.+||+.+++ +...+.+.++.|+..|++++.... .|.. -..++|+.+..+.
T Consensus 33 ~q~~iL~~l~~~-~~~t~~~La~~l~i---~~~~vs~~v~~L~~~gli~r~~~~---~D~R~~~l~lT~~G~~~~ 100 (140)
T d2etha1 33 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP---VDRRTYRVVLTEKGKEIF 100 (140)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT---TTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeeecc---cccchhhhhcCHHHHHHH
Confidence 344566666664 68999999999999 789999999999999999977521 1101 2477777765443
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=92.08 E-value=0.091 Score=36.72 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhc-CCCCCCcccHHHHHHHHHccCceeeeccccccc
Q 018205 15 AQAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSAL-EINPTKADGLFKLMRLLVHTGFFSTANVQSAQQ 93 (359)
Q Consensus 15 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~ 93 (359)
+.....+++.+-|...+|... .. |+....||.+.+ |+ ....|.+=|+.|++.|++.+......|
T Consensus 9 pv~~~l~ilg~kW~l~Il~~L---------~~--g~~rF~el~~~l~gI---s~~~Ls~rLkeL~~~glv~r~~~~~~p- 73 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQI---------NR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP- 73 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHHH---------TT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS-
T ss_pred CHHHHHHHHcCCCHHHHHHHH---------cc--CCCCHHHHHhhCccc---chhHHHHHHHHHHHCCceeecccCCCC-
Confidence 467788888888887776552 22 689999999998 89 678999999999999999886421100
Q ss_pred CccceEeccccccccc
Q 018205 94 QEEEAYALTLTSKLFL 109 (359)
Q Consensus 94 ~~~~~~~~t~~~~~l~ 109 (359)
..-.|++|+.+..+.
T Consensus 74 -~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 74 -PRVEYSLTPLGEKVL 88 (102)
T ss_dssp -CEEEEEECHHHHTTH
T ss_pred -CeehhhhhHhHHHHH
Confidence 113499999887665
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=91.97 E-value=0.035 Score=41.32 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=45.8
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++..|... ++.|+.+||+.+++ +...+.+.++.|+..|++++.... .|. .-.+.+|+.++.+.
T Consensus 35 iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~gli~r~~~~---~D~R~~~i~LT~~G~~~~ 98 (139)
T d2a61a1 35 ILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDP---ADRRAYFLVITRKGEEVI 98 (139)
T ss_dssp HHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHhCC---CcccchHHHHHHHhcCeeeeeecc---CCCCeEEEEECHHHHHHH
Confidence 34444443 68999999999999 689999999999999999877421 110 12377787776544
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.87 E-value=0.034 Score=34.84 Aligned_cols=47 Identities=11% Similarity=0.246 Sum_probs=39.3
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
++..|...|.+ ++..|+.|||+++|+ ++..+.+-++.|...|++..-
T Consensus 4 ~D~~Il~~L~~-n~r~s~~eiA~~l~l---s~~~v~~Ri~~L~~~giI~~~ 50 (60)
T d2cyya1 4 IDKKIIKILQN-DGKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 50 (60)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 35567777777 479999999999999 678899999999999999754
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=91.76 E-value=0.052 Score=34.33 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=38.9
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|.+.|.. ++..|..+||+.+|+ .+..+.+-++-|...|++...
T Consensus 7 D~~IL~~L~~-n~r~s~~~iA~~lgi---s~~tv~~Ri~~L~~~giI~~~ 52 (63)
T d2cfxa1 7 DLNIIEELKK-DSRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (63)
T ss_dssp HHHHHHHHHH-CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 4556777776 479999999999999 678899999999999999754
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.75 E-value=0.1 Score=32.90 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+++.+..+||+.+|+ ....+.+.++-|...|++....
T Consensus 21 ~~~v~~~~iA~~L~v---s~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 21 GVTPLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp TCCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCcHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcC
Confidence 478999999999999 5789999999999999999874
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.045 Score=34.62 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=39.0
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeee
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTA 86 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~ 86 (359)
+..|...|.+ ++..|..|||+++|+ +...+.+=++.|.+.|++...
T Consensus 7 D~~IL~~L~~-~~r~s~~eiA~~l~l---s~~~v~~Ri~rL~~~GiI~~~ 52 (63)
T d2cg4a1 7 DRGILEALMG-NARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 52 (63)
T ss_dssp HHHHHHHHHH-CTTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeE
Confidence 4556777776 479999999999999 678899999999999999854
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.30 E-value=0.068 Score=41.03 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=56.8
Q ss_pred cCCCCeEEEeCCC-cchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEee-CCC---CCC-CCCccEEEEcch-hc
Q 018205 192 FQGLGSLVDVGGG-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIA-GDM---FQS-IPPADAFFFKAI-FH 263 (359)
Q Consensus 192 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~-~d~---~~~-~p~~D~i~~~~v-l~ 263 (359)
..+..+|+-+|+| .|.++..+++.. +++++++|.++ -++.+++..--.++. .+- .+. ...+|+++-.-. -+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 5678899999998 577888888765 78999999844 566555311011221 111 111 224888775321 11
Q ss_pred cCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 264 AFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 264 ~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.. .+....++|+| +|+++++..
T Consensus 104 ~~-------~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKV---GGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEE---EEEEEECCC
T ss_pred cc-------hHHHHHHHhhc---cceEEEecc
Confidence 11 23456778999 899988764
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.23 E-value=0.036 Score=41.09 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=43.7
Q ss_pred hcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 43 VIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 43 ~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.|...++++|..+||+.+++ +...+.++++.|+..|++++... +.|.. -...+|+.++.+.
T Consensus 36 ~l~~~~~~~t~~~la~~~~~---~~~~vs~~v~~L~~~gli~r~~~---~~D~R~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 36 HLARHRDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAV---AEDRRAKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHCSSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---BTTBCSCEEEECTTHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHcCCccccCC---CCCCCchhhhcCHHHHHHH
Confidence 34333346899999999999 78999999999999999997742 11111 1367777665444
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=91.09 E-value=0.059 Score=33.79 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=32.0
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++.+..+||+.+|+ ....+...++-|...|+++...
T Consensus 20 ~~v~~~~iA~~L~v---s~~SVs~mikrL~~~GlV~~~~ 55 (61)
T d2ev0a1 20 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK 55 (61)
T ss_dssp SSCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred CCccHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcc
Confidence 79999999999999 6789999999999999998764
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.91 E-value=0.078 Score=39.52 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=57.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc
Q 018205 16 QAHLFKIIYNYVSSTSLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE 95 (359)
Q Consensus 16 ~~~l~~~~~g~~~~~~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~ 95 (359)
..+.++++.+-|...+|+.+. . |+..+.||.+.+|+ ....|.+=|+.|+..|++++.. .. ...
T Consensus 10 v~~~l~ilg~kW~l~Il~~l~---------~--G~~rf~el~~~lgi---s~~vLs~rL~~L~~~gLv~r~~-~~--~p~ 72 (142)
T d2f2ea1 10 VARPLDVIGDGWSMLIVRDAF---------E--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVP-AE--SGS 72 (142)
T ss_dssp TTTTHHHHCSSSHHHHHHHHH---------T--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEE-CS--SSS
T ss_pred HHHHHHHHcCCCHHHHHHHHH---------c--CCCCHHHHHHHhhc---cHHHHHHHHHHHHHhcceeeec-CC--CCC
Confidence 345667777788877777642 2 79999999999999 6788999999999999998742 11 111
Q ss_pred cceEeccccccccc
Q 018205 96 EEAYALTLTSKLFL 109 (359)
Q Consensus 96 ~~~~~~t~~~~~l~ 109 (359)
...|++|+.+..|.
T Consensus 73 r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 73 HQEYRLTDKGRALF 86 (142)
T ss_dssp CEEEEECHHHHTTH
T ss_pred eeEEecCcCcchHH
Confidence 24599999887665
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.13 Score=31.20 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=37.3
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|..|.+ +...|+..||.++++ +...+.|.|..|...|.+.+.+
T Consensus 7 ~l~~lg~-~~~~tA~~LA~kl~v---pKk~iNr~LYsL~~kgkl~k~~ 50 (59)
T d2gxba1 7 FLEELGE-GKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEA 50 (59)
T ss_dssp HHHHHCT-TCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhcCC-ccchhHHHHHHHhCC---cHHHHHHHHHHHHHccchhhcC
Confidence 3445554 368899999999999 7899999999999999999885
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.77 E-value=0.19 Score=38.13 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=55.6
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC---C----CCCccEEEEcchh
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ---S----IPPADAFFFKAIF 262 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~---~----~p~~D~i~~~~vl 262 (359)
..+..+|+=+|+|. |.++..+++.. +.+++++|..+ -++.+++..--.++..+-.+ . .+++|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 55678888899885 66777888776 68999999843 55555532222222221111 0 123444333211
Q ss_pred ccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 263 HAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 263 ~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
. ...+....+.|+| +|+++++-.
T Consensus 103 ---~----~~~~~~~~~~l~~---~G~iv~~G~ 125 (166)
T d1llua2 103 ---S----NSAFGQAIGMARR---GGTIALVGL 125 (166)
T ss_dssp ---C----HHHHHHHHTTEEE---EEEEEECCC
T ss_pred ---c----chHHHHHHHHhcC---CcEEEEEEe
Confidence 1 2367888899999 899988753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.74 E-value=0.088 Score=41.57 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=65.1
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEee---CCCCC------CCCCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIA---GDMFQ------SIPPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~---~d~~~------~~p~~D~i~~~~ 260 (359)
.++..+||.+|||. |.++..+++.....+++++|.++ -++.|++..--..+. .|+.+ .-.++|+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 66788999999998 66778888887677899999954 666665322111111 11111 112488888432
Q ss_pred hh------c-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 261 IF------H-AFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 261 vl------~-~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
-. + ..........|+.+.++++| +|++.++-....
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~ 144 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVT 144 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCS
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCC
Confidence 11 1 01111123589999999999 999998875443
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.74 Score=34.83 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=60.0
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEeeCCCCC--C--------CC-CccEEEE
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFIAGDMFQ--S--------IP-PADAFFF 258 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~~~d~~~--~--------~p-~~D~i~~ 258 (359)
..+..+|+=+|||. |.++..+++.....+++++|.. .-++.|++..--.+...+-.+ . .+ ++|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56678999999986 5566777777644489999984 455555532111122211111 0 11 4888875
Q ss_pred cchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 259 KAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 259 ~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.- .. ...++...+.+++ ||+++++.....
T Consensus 104 ~~-----G~---~~~~~~a~~~~~~---gG~iv~~G~~~~ 132 (171)
T d1pl8a2 104 CT-----GA---EASIQAGIYATRS---GGTLVLVGLGSE 132 (171)
T ss_dssp CS-----CC---HHHHHHHHHHSCT---TCEEEECSCCCS
T ss_pred cc-----CC---chhHHHHHHHhcC---CCEEEEEecCCC
Confidence 32 22 2378899999999 999999875443
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=90.40 E-value=0.11 Score=38.20 Aligned_cols=65 Identities=11% Similarity=0.243 Sum_probs=46.8
Q ss_pred hcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccc
Q 018205 37 ELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLF 108 (359)
Q Consensus 37 ~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l 108 (359)
+..++..|... ++.|..+||+.+++ +...+.++++-|+..|++++... +.|.. -.+.+|+.++.+
T Consensus 36 q~~vL~~i~~~-~~~t~~~la~~l~~---~~~~~s~~l~~L~~~Gli~r~~~---~~D~R~~~l~lT~~G~~~ 101 (136)
T d2bv6a1 36 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERS---EVDQREVFIHLTDKSETI 101 (136)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEEC---SSSTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEEeec---CCcccchhhccCHHHHHH
Confidence 34455566553 68999999999999 67889999999999999997752 11111 135777766543
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=89.81 E-value=0.056 Score=40.09 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=44.7
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++..|...+++.|..+|++.+++ +...+.+.++.|+..|+++..... .|. .-.+++|+.++.+.
T Consensus 36 ~L~~l~~~~~~~t~~~la~~l~i---~~~~vs~~l~~L~~~glI~~~~~~---~D~R~~~l~lT~~G~~~~ 100 (140)
T d3deua1 36 TLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCA---SDRRAKRIKLTEKAEPLI 100 (140)
T ss_dssp HHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC-----------CEEEECGGGHHHH
T ss_pred HHHHHHHcCCCccHHHHHHHHCC---CHhHHHHHHHHHHhCCCEEecccC---CCCCceeeEECHHHHHHH
Confidence 34444433357999999999999 789999999999999999876411 000 02478888776544
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=89.60 E-value=0.19 Score=32.23 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEeccccccccc
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSKLFL 109 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~~l~ 109 (359)
|++-|...|+++.++ +-..|+|.|-.|.+.|+.+-.- +.++.|.-++|..++.+.
T Consensus 22 g~~WSLaklsKra~~---PMS~LRR~LTqL~~aGl~~t~~----~edG~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 22 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSV----EADGRGHASLTQEGAALA 76 (81)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE----CTTSCEEEEECHHHHHHH
T ss_pred CCCccHHHHHhhcCC---cHHHHHHHHHHHhhcCceeeee----ccCCcceeeccHHHHHHH
Confidence 468899999999999 7999999999999999997542 122356677777765443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.56 E-value=0.2 Score=38.52 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=58.3
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCC---CCCC----CC-CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGD---MFQS----IP-PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d---~~~~----~p-~~D~i~~~~v 261 (359)
.++..+|+-+|||. |.++..+++......+++.|..+ -++.+++..-..++..+ ..+. .+ ++|+|+-+-
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~- 104 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST- 104 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC-
Confidence 56778899999985 55677777777555778888744 55555432222232221 1110 11 488877432
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.. ...++.+.++++| +|+++++...
T Consensus 105 ----G~---~~~~~~~~~~~~~---~G~i~~~G~~ 129 (174)
T d1f8fa2 105 ----GS---PEILKQGVDALGI---LGKIAVVGAP 129 (174)
T ss_dssp ----CC---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred ----Cc---HHHHHHHHhcccC---ceEEEEEeec
Confidence 11 2377888999999 8999887643
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.63 Score=38.90 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=47.7
Q ss_pred cCCCCeEEEeCCCcchHHHHHHHHC-CCCeEEEeeccc-ccccCC------CCCCceEeeCCCCCC---C---CCccEEE
Q 018205 192 FQGLGSLVDVGGGTGSFARIISEAF-PGIKCTVLDLPH-VVPKVP------DTDNLKFIAGDMFQS---I---PPADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~-~~~~a~------~~~~v~~~~~d~~~~---~---p~~D~i~ 257 (359)
..+..+|||+.+|.|.-+..++... +..+++++|++. -++..+ ...++.+...|+... . ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 3457899999999999888888764 466899999943 443333 246788888887431 1 2489888
Q ss_pred E
Q 018205 258 F 258 (359)
Q Consensus 258 ~ 258 (359)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.86 E-value=0.17 Score=44.10 Aligned_cols=63 Identities=13% Similarity=0.299 Sum_probs=38.7
Q ss_pred CccHHHHHHHHHhhcccchHHHHHhcccccCCCCeEEEeCCCcchHHHHHHHHC-------CCCeEEEeeccccc
Q 018205 163 NPDFNSIYNQAMASDSQLANLIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAF-------PGIKCTVLDLPHVV 230 (359)
Q Consensus 163 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 230 (359)
.|+....|...++.. ...+...+. .++..+|||+|+|+|.++..+++.. ..++++.+|.+..+
T Consensus 53 sp~is~~Fg~~ia~~---~~~~~~~~~--~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 53 SPEISQMFGELLGLW---SASVWKAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp HHHHCHHHHHHHHHH---HHHHHHHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCchHHHHHHHHHHH---HHHHHHHhC--CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 345545555544321 123333333 3456789999999999998776653 23468888886643
|
| >d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Cell cycle transcription factor e2f-dp domain: Cell cycle transcription factor E2F-4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.18 Score=31.91 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=33.1
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+..++++.|+.++++ ..+++..+.++|++.|++++..
T Consensus 24 ~~~~L~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 60 (67)
T d1cf7a_ 24 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 60 (67)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CeeeHHHHHHHhcCc--chhhHHHHHHHHhhhhhhhccc
Confidence 677999999999994 3699999999999999999875
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.79 E-value=0.11 Score=34.92 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=38.1
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.|++.|.+.++.+|=++||+.+|+ ....+++.|..|...|+++..+
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi---~in~VRk~Ly~L~~~~L~~y~R 67 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYRK 67 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCC---cHHHHHHHHHHHHhCCceEEEE
Confidence 356666432358999999999999 7899999999999999997664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.60 E-value=0.38 Score=37.03 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=58.7
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCCCCCceEe-e--CCCCC--------CCC-CccEEE
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPDTDNLKFI-A--GDMFQ--------SIP-PADAFF 257 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~v~~~-~--~d~~~--------~~p-~~D~i~ 257 (359)
..+..+||-+|+|. |.++..+++..--.+++++|.+ +-.+.+++..--.++ . .|..+ ..+ ++|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 45678999999984 7888888888732379999984 355555432111111 1 11100 011 489887
Q ss_pred EcchhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 258 FKAIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 258 ~~~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
-.- ..+ ..++...++|++ +|+++++....
T Consensus 106 d~v-----G~~---~~~~~a~~~l~~---~G~iv~~G~~~ 134 (182)
T d1vj0a2 106 EAT-----GDS---RALLEGSELLRR---GGFYSVAGVAV 134 (182)
T ss_dssp ECS-----SCT---THHHHHHHHEEE---EEEEEECCCCS
T ss_pred ecC-----Cch---hHHHHHHHHhcC---CCEEEEEeecC
Confidence 432 112 267888899999 89998876443
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=88.08 E-value=0.18 Score=37.11 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=46.2
Q ss_pred cCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 38 LDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 38 lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
..+...|... ++.|..+|++.+++ +...+.++++.|+..|++++.... +++ .+++|+.++.+.
T Consensus 37 ~~vL~~l~~~-~~~t~~ela~~~~i---~~~~vs~~v~~L~~~glv~r~~~~-----~D~R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 37 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP-----NDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT-----TCSSCEEEEECHHHHHHH
T ss_pred HHHHHhHHhC-cCCCHHHHHHHHCC---CHhHHHHHHHHHhhCCCEEEeecc-----CCCCeeEEEECHHHHHHH
Confidence 3344444443 68999999999999 789999999999999999876421 122 477777766443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.00 E-value=0.18 Score=38.43 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=57.7
Q ss_pred cCCCCeEEEeCC-C-cchHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCC---CCC-----CCC-CccEEEEc
Q 018205 192 FQGLGSLVDVGG-G-TGSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGD---MFQ-----SIP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~-G-~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d---~~~-----~~p-~~D~i~~~ 259 (359)
..+..+||=+|| | .|.++..+++.....+++++|..+ -.+.+++..--.++..+ ..+ ..+ .+|+++-.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 567789999996 3 566777777776557899999843 44444321111222221 111 112 38888753
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
.. . ...++.+.++++| +|+++++...
T Consensus 105 ~g-----~---~~~~~~a~~~l~~---~G~iv~~G~~ 130 (170)
T d1jvba2 105 NN-----S---EKTLSVYPKALAK---QGKYVMVGLF 130 (170)
T ss_dssp CC-----C---HHHHTTGGGGEEE---EEEEEECCSS
T ss_pred cc-----c---chHHHhhhhhccc---CCEEEEeccc
Confidence 22 1 2367778889999 8999887644
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=87.58 E-value=0.12 Score=36.97 Aligned_cols=54 Identities=22% Similarity=0.128 Sum_probs=40.7
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLF 108 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l 108 (359)
++.|..+||+.+++ +...+.++++.|+..|++.+... +.|.. -...+|+.++.+
T Consensus 47 ~~~t~~ela~~l~~---~~~~vs~~i~~Le~~gli~r~~~---~~D~R~~~i~LT~~G~~~ 101 (115)
T d1hsja1 47 NEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRS---LQDERTVIVYVTDTQKAN 101 (115)
T ss_dssp SEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEEC---CSSSSCCEEECCSSHHHH
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHcCCeEEEee---cCCCceEEEEECHHHHHH
Confidence 68999999999999 78999999999999999987742 11111 136666665433
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=87.48 E-value=0.28 Score=31.27 Aligned_cols=37 Identities=14% Similarity=0.386 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..++..+||+.+|+ +..-+++-|+.|++.|+++...
T Consensus 23 G~~l~~~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 59 (69)
T d2hs5a1 23 GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL 59 (69)
T ss_dssp TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence 356688999999999 6789999999999999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=87.02 E-value=0.3 Score=37.07 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=56.8
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCC----CCCCccEEEEcchhccC
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQ----SIPPADAFFFKAIFHAF 265 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~----~~p~~D~i~~~~vl~~~ 265 (359)
..+..+|+=+|+|. |.++..+++.. +++++++|.+. -.+.+++..--.++...-.. ...++|+++-.--
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g---- 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---- 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee----
Confidence 56778888899875 77888888886 77888888743 44444421111222211100 1224898775322
Q ss_pred CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 266 VDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.+ ..++...+.+++ +|+++++-.
T Consensus 103 -~~---~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1uufa2 103 -AP---HNLDDFTTLLKR---DGTMTLVGA 125 (168)
T ss_dssp -SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred -cc---hhHHHHHHHHhc---CCEEEEecc
Confidence 11 146677789999 899998764
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=86.91 E-value=0.11 Score=38.66 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=43.4
Q ss_pred hcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 43 VIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 43 ~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
.|.+. +++|..+||+.+++ +...+.+.++.|+..|++++... +.|.. -...+|+.+..+.
T Consensus 37 ~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~glI~r~~~---~~D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 37 RVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQED---ASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC---SSCTTCEEEEECHHHHHHH
T ss_pred HHHhC-CCCCHHHHHHHHCc---cHhhHHHHHHHHHhhhcccccCC---CCCCCccccccCHHHHHHH
Confidence 34443 57999999999999 78999999999999999998752 11100 1466677665443
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=86.35 E-value=0.12 Score=36.99 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=41.4
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEecccccccc
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLF 108 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l 108 (359)
+++|..+||+.+++ +...+.+.++.|+..|++.+... +.|. .-.+.+|+.++..
T Consensus 48 ~~~t~~~la~~l~~---~~~tvs~~i~~Le~~gli~r~~~---~~D~R~~~i~LT~~G~~~ 102 (115)
T d2frha1 48 KEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRN---EHDERTVLILVNAQQRKK 102 (115)
T ss_dssp SEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCC---SSSSCCCEEECCSHHHHH
T ss_pred CCCCHHHHHHHHCC---CHhHHHHHHHHHHhhhhheeeec---ccCCceEEEEECHHHHHH
Confidence 56899999999999 68999999999999999988752 1111 1236777776543
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=85.82 E-value=0.45 Score=30.67 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=32.2
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
++|-++||+-+|+ ....+.|.|+.|...|+++...
T Consensus 27 ~lt~~elA~~lg~---sr~tvsr~l~~l~~~g~I~~~~ 61 (73)
T d1zyba1 27 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELHR 61 (73)
T ss_dssp ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEET
T ss_pred ecCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 6799999999999 6799999999999999998763
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=85.42 E-value=0.2 Score=36.76 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=45.8
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEeccccccccc
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLFL 109 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l~ 109 (359)
+..|... +++|..+||+.+++ +...+.+.++.|+..|++.+... +.|.. -..++|+.+..+.
T Consensus 39 L~~l~~~-~~~t~~~La~~~~i---~~~~vsr~i~~L~~~glv~r~~~---~~D~R~~~i~lT~~G~~~~ 101 (137)
T d1z91a1 39 LLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRS---EEDERSVLISLTEDGALLK 101 (137)
T ss_dssp HHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBC---SSCTTSBEEEECHHHHSGG
T ss_pred HHHHHcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHhhccceEEeec---CCCCCeEEEEECHHHHHHH
Confidence 3444432 68999999999999 78999999999999999998752 11111 2367788776554
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=85.12 E-value=0.65 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=33.2
Q ss_pred CCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..+ |..+||+.+++ +...+++-|+.|++.|+++...
T Consensus 19 G~~LPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 56 (78)
T d3bwga1 19 GDKLPVLETLMAQFEV---SKSTITKSLELLEQKGAIFQVR 56 (78)
T ss_dssp TCBCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence 3566 89999999999 6899999999999999999885
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=84.98 E-value=0.22 Score=36.11 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred CcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCcc-ceEecccccccc
Q 018205 39 DIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEE-EAYALTLTSKLF 108 (359)
Q Consensus 39 glf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~-~~~~~t~~~~~l 108 (359)
.++..|... ++++|..+||+.+++ +...+.+.++.|+..|++++... +.|.. -...+|+.++.+
T Consensus 37 ~vL~~l~~~~~~~~~~~~ia~~l~~---~~~~vs~~v~~L~~~glV~r~~~---~~D~R~v~i~LT~~G~~~ 102 (125)
T d1p4xa2 37 TILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERS---TEDERKILIHMDDAQQDH 102 (125)
T ss_dssp HHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEEC---SSSTTCEEEECCHHHHHH
T ss_pred HHHHHHHHccCCCccHHHHHHHHCC---CcchHHHHHHHHHhccCEeeeec---CCCCCeEEEEECHHHHHH
Confidence 345555332 257899999999999 68999999999999999987742 11111 126667666543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.68 E-value=0.065 Score=41.03 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=58.5
Q ss_pred CCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeecc-cccccCCC--CCCceEeeCCC---CCCCCCccEEEEcchhccCC
Q 018205 194 GLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLP-HVVPKVPD--TDNLKFIAGDM---FQSIPPADAFFFKAIFHAFV 266 (359)
Q Consensus 194 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~--~~~v~~~~~d~---~~~~p~~D~i~~~~vl~~~~ 266 (359)
++.+|+-+|+|. |..+...+... +.+++++|.. +.++..+. ..+++....+- .+.+..+|+|+..-...--.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 468999999996 67778888877 7899999994 35554331 23344433322 11244699999865543322
Q ss_pred chHHHHHHHHHHHhcccCCCCcEEEE
Q 018205 267 DEDCLKILKRCREAIASRGDRGKVII 292 (359)
Q Consensus 267 ~~~~~~~L~~~~~~L~p~~~gG~lli 292 (359)
.+.. +=++..+.||| |.++|
T Consensus 110 aP~l--It~~mv~~Mk~----GSVIV 129 (168)
T d1pjca1 110 APIL--VPASLVEQMRT----GSVIV 129 (168)
T ss_dssp CCCC--BCHHHHTTSCT----TCEEE
T ss_pred cCee--ecHHHHhhcCC----CcEEE
Confidence 3322 56777788999 55544
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.58 E-value=0.54 Score=35.70 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=57.3
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCC--CC-----CCC-CccEEEEcch
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDM--FQ-----SIP-PADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~--~~-----~~p-~~D~i~~~~v 261 (359)
..+..+||-+|+|. |..+..+++......++++|.++ -++.+++..-..++..+- .+ ..+ ++|+++-.-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~- 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV- 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS-
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec-
Confidence 45678899999886 45557777766566889999843 455444322223332211 11 011 388777432
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDI 295 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~ 295 (359)
.. ...++...+.+++ +|+++++-.
T Consensus 109 ----g~---~~~~~~a~~~l~~---~G~iv~~G~ 132 (172)
T d1h2ba2 109 ----GS---QATVDYTPYLLGR---MGRLIIVGY 132 (172)
T ss_dssp ----CC---HHHHHHGGGGEEE---EEEEEECCC
T ss_pred ----Cc---chHHHHHHHHHhC---CCEEEEEeC
Confidence 22 2368888899999 899998763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.42 E-value=1.2 Score=31.96 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=50.9
Q ss_pred CeEEEeCCCcchHHHHHHHHC--CCCeEEEeec-ccccccCCCCCCceEeeCCCCCC-------CCCccEEEEcchhccC
Q 018205 196 GSLVDVGGGTGSFARIISEAF--PGIKCTVLDL-PHVVPKVPDTDNLKFIAGDMFQS-------IPPADAFFFKAIFHAF 265 (359)
Q Consensus 196 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~-------~p~~D~i~~~~vl~~~ 265 (359)
++|+=+|+ |.++..+++.. .+..++++|. ++.++.+.+...+.++.||..++ +..+|.+++. .
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t 73 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----T 73 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence 35777776 55655555543 2678999998 55666554333678899998642 2358888763 2
Q ss_pred CchHHHHHHHHHHHhccc
Q 018205 266 VDEDCLKILKRCREAIAS 283 (359)
Q Consensus 266 ~~~~~~~~L~~~~~~L~p 283 (359)
++++...+.....+.+.+
T Consensus 74 ~~d~~N~~~~~~~k~~~~ 91 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGI 91 (132)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 334444455556667776
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.42 E-value=0.3 Score=31.33 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=46.6
Q ss_pred HhcCcchhcccCCCCCCHHHHHHhcCCCCCCc-ccHHHHHHHHHccCceeeecccccccCccceEeccccc
Q 018205 36 VELDIPEVIHKHGRPITLPQLVSALEINPTKA-DGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTS 105 (359)
Q Consensus 36 ~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~-~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~ 105 (359)
.+..|++.|... ++.++-.||+.+|+ .. .-+.+.|..|...|.+.+.+.+ +..|.++...
T Consensus 6 ~eekI~~~L~~~-g~~~Al~iak~lGl---~kakeVN~~LY~L~k~g~v~k~~~t------PP~W~L~~~~ 66 (73)
T d1xmka1 6 IKEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGTT------PPIWHLTDKK 66 (73)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECSS------SCEEEECHHH
T ss_pred HHHHHHHHHHHc-CCchHHHHHHHhCC---CcHHHHhHHHHHHHHCCCeecCCCC------CCceeeecch
Confidence 455677888775 68999999999999 44 4589999999999999987522 4567776543
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.24 E-value=0.15 Score=37.41 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=45.6
Q ss_pred CcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccc---eEeccccccccc
Q 018205 39 DIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEE---AYALTLTSKLFL 109 (359)
Q Consensus 39 glf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~---~~~~t~~~~~l~ 109 (359)
.++..|... ++.|..+||+.+++ +...+.++++.|+..|++++.... .++ ..++|+.+..+.
T Consensus 34 ~vL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~i~~L~~~gli~r~~~~-----~D~R~~~l~lT~~G~~~~ 98 (136)
T d2fbia1 34 RVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAP-----KDQRRVYVNLTEKGQQCF 98 (136)
T ss_dssp HHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEET-----TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeecC-----ccCchhhhccCHHHHHHH
Confidence 344455553 68999999999999 789999999999999999876421 122 266777665443
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=84.07 E-value=0.63 Score=30.42 Aligned_cols=36 Identities=6% Similarity=0.138 Sum_probs=32.9
Q ss_pred CCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 49 RPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
-++|-++||..+|+ ....+.|.|+.|...|+++..+
T Consensus 28 ~~lt~~eLA~~~G~---sretvsr~L~~l~~~glI~~~~ 63 (81)
T d2gaua1 28 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG 63 (81)
T ss_dssp CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 38899999999999 5799999999999999999874
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.97 E-value=0.4 Score=30.46 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+|-++||.-+|+ ....+.|.|+.|...|+++..+
T Consensus 29 ~lt~~~lA~~~G~---sRetvsr~L~~l~~~glI~~~~ 63 (69)
T d1i5za1 29 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG 63 (69)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 7899999999999 6799999999999999999874
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=83.72 E-value=0.14 Score=39.12 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=45.1
Q ss_pred cchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 40 IPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 40 lf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++..|... ++.|+.+||+.+++ +...+.++++.|...|++++.... .|. .-...+|+.+..+.
T Consensus 46 vL~~l~~~-~~~t~~~la~~~~l---~~~tvs~~i~rL~~~gli~r~~~~---~D~R~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 46 ILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRL---NDKRNTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC---------CEEEECHHHHHHH
T ss_pred HHhhhccC-CCcCHHHHHHHHcC---CchhhHHHHHHHHHCCCceeeccc---ccCeeeeeccCHhHHHHH
Confidence 44555543 68999999999999 789999999999999999977421 110 11367777665443
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=83.27 E-value=0.22 Score=38.18 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=39.5
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCc-cceEeccccccccc
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQE-EEAYALTLTSKLFL 109 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~-~~~~~~t~~~~~l~ 109 (359)
++|..+||+.+++ +...+.++++.|+..|++++.... .|. .-..++|+.++.+.
T Consensus 79 ~lt~~eLa~~l~i---~~~tvsr~l~~Le~~GlV~r~~~~---~DrR~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 79 GLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDE---RDRRSASIRLTPQGRALV 133 (172)
T ss_dssp CBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC----------CCBEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHhHHHHHHHHHHhCCCeeeeccc---cchhhHHhhcCHHHHHHH
Confidence 5899999999999 679999999999999999987521 110 01266677665443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.19 E-value=1.2 Score=34.00 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=56.8
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeec-ccccccCCCCCCceEe---eCCCCCC------CC-CccEEEEc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDL-PHVVPKVPDTDNLKFI---AGDMFQS------IP-PADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~d~~~~------~p-~~D~i~~~ 259 (359)
.++..+|+=+|||. |.++..+++.....+++++|. ++-++.|++..--.++ ..|.... .+ ++|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 56778999999986 556677777775578999999 4477777642211222 2221100 11 48877743
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVIN 298 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~ 298 (359)
.. .. ..+......+.++ +|+++++-....
T Consensus 107 ~g-----~~---~~~~~a~~~~~~~--~G~~v~vG~~~~ 135 (176)
T d1d1ta2 107 IG-----HL---ETMIDALASCHMN--YGTSVVVGVPPS 135 (176)
T ss_dssp SC-----CH---HHHHHHHTTSCTT--TCEEEECSCCCT
T ss_pred CC-----ch---HHHHHHHHHhhcC--CeEEEEEEcccc
Confidence 22 12 2445545555440 588888765443
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=82.99 E-value=0.33 Score=34.99 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=37.7
Q ss_pred cCcchhcccC-CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 38 LDIPEVIHKH-GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 38 lglf~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
+.|+..|... ++++|+.|||+.+++ ....+.+.++.|...|++++..
T Consensus 37 ~~iL~~l~~~~~~~~t~~eia~~~~~---~~~~vs~~l~~L~~~g~v~r~~ 84 (125)
T d1p4xa1 37 FILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVR 84 (125)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhccCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCceeec
Confidence 3344445332 257899999999999 6899999999999999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=82.92 E-value=0.32 Score=37.30 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=59.2
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEe---eCCCCC---C--C-CCccEEEEcc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFI---AGDMFQ---S--I-PPADAFFFKA 260 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~---~~d~~~---~--~-p~~D~i~~~~ 260 (359)
..+..+|+=+|||. |..+..+++..--.+++++|..+ -.+.+++..-..++ ..+..+ . . .++|+|+-+-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 56678888899987 88888888876334799999844 45555432111222 111111 1 1 1389877432
Q ss_pred hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeec
Q 018205 261 IFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVI 297 (359)
Q Consensus 261 vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~ 297 (359)
- .+ ..++++.++++| +|+++++....
T Consensus 105 g-----~~---~~~~~a~~~~~~---~G~iv~~G~~~ 130 (174)
T d1jqba2 105 G-----GS---ETLSQAVKMVKP---GGIISNINYHG 130 (174)
T ss_dssp S-----CT---THHHHHHHHEEE---EEEEEECCCCC
T ss_pred C-----CH---HHHHHHHHHHhc---CCEEEEEeecC
Confidence 1 11 267888899999 89998876443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.90 E-value=1.7 Score=32.84 Aligned_cols=94 Identities=13% Similarity=-0.022 Sum_probs=55.1
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEee-CCCCCC---------CCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIA-GDMFQS---------IPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~-~d~~~~---------~p~~D~i~~~ 259 (359)
.++..+||=+|+|. |..+..+++..-..+++++|.++ -.+.+++..-...+. .+-.+. ..++|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 56778999998864 45667777777677999999844 555554322222221 111111 1248988754
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
... + ..++.+...+++ +|..+++-..
T Consensus 106 ~G~-----~---~~~~~a~~~~~~---~~g~~~~~~~ 131 (176)
T d2jhfa2 106 IGR-----L---DTMVTALSCCQE---AYGVSVIVGV 131 (176)
T ss_dssp SCC-----H---HHHHHHHHHBCT---TTCEEEECSC
T ss_pred CCc-----h---hHHHHHHHHHhc---CCcceEEecC
Confidence 332 2 256777778887 5444444433
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=82.67 E-value=0.37 Score=30.50 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=36.7
Q ss_pred chhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 41 PEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 41 f~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
.+.|.. +...|+.+||+.+|+ ..+-+.|.|-.|...|.+....
T Consensus 16 l~~L~~-~~~~tA~~LAk~Lg~---~Kk~VNr~LY~L~~~G~v~~~~ 58 (70)
T d1sfua_ 16 VLSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 58 (70)
T ss_dssp HHTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhcCC-CCCchHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecCC
Confidence 355655 478899999999999 5788999999999999998875
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=82.65 E-value=0.15 Score=41.76 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=52.1
Q ss_pred HHHHhcccccCCCCeEEEeCCCcchHHHHHHHHCCCCeEEEeeccc-ccccCC-------C--------CCCceEeeCCC
Q 018205 183 LIVKDCQPIFQGLGSLVDVGGGTGSFARIISEAFPGIKCTVLDLPH-VVPKVP-------D--------TDNLKFIAGDM 246 (359)
Q Consensus 183 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~-------~--------~~~v~~~~~d~ 246 (359)
.+.+++.-......+|||.=||.|..+..++.. +.+|+++|.+. +....+ . ..|++++.+|.
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds 154 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence 455555411223358999999999999999988 67899999854 222111 1 24789999986
Q ss_pred CC---CC-CCccEEEEcchh
Q 018205 247 FQ---SI-PPADAFFFKAIF 262 (359)
Q Consensus 247 ~~---~~-p~~D~i~~~~vl 262 (359)
.+ .. +.||+|++-=++
T Consensus 155 ~~~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 155 LTALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HHHSTTCSSCCSEEEECCCC
T ss_pred HHHHhccCCCCCEEEECCCC
Confidence 33 22 348998875544
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.39 E-value=1.1 Score=28.72 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCCC-CHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPI-TLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|..+ |..+||+.+++ +...+++-++.|+..|+|....
T Consensus 24 G~~LPs~~eLa~~~~v---Sr~tvr~Al~~L~~~G~i~~~~ 61 (74)
T d1hw1a1 24 GTILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQH 61 (74)
T ss_dssp TSBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCccHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEe
Confidence 3566 79999999999 6789999999999999999885
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.52 E-value=0.76 Score=30.69 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 48 GRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|.|.+..+|++..|+.- ....++..|..|+..|+|++..
T Consensus 21 g~Pv~s~~i~~~~~l~~-S~aTIRn~m~~LE~~G~l~~~h 59 (87)
T d1stza1 21 KKPVSSQRVLEVSNIEF-SSATIRNDMKKLEYLGYIYQPH 59 (87)
T ss_dssp CSCBCHHHHHHHSCCCS-CHHHHHHHHHHHHHTTSEECCS
T ss_pred CCccCHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcccCCC
Confidence 57999999999988732 4688999999999999998764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.46 E-value=1.5 Score=32.61 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=53.4
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEeeCCCCCC--------CCCccEEEEcch
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFIAGDMFQS--------IPPADAFFFKAI 261 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~~~d~~~~--------~p~~D~i~~~~v 261 (359)
..+..+||=.|+|. |..+..+++.. +.+++++|.++ -++.+++.. ...+...-.++ .+++|.++...+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~G-a~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELG-ADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTT-CSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcC-cceecccccchhhhhcccccCCCceEEeecC
Confidence 55678888899886 45556666654 66899999843 444444321 11111111011 123444443221
Q ss_pred hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 018205 262 FHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIV 296 (359)
Q Consensus 262 l~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~ 296 (359)
. ...+....++|+| +|+++++...
T Consensus 103 ----~----~~~~~~a~~~l~~---~G~i~~~g~~ 126 (168)
T d1rjwa2 103 ----S----KPAFQSAYNSIRR---GGACVLVGLP 126 (168)
T ss_dssp ----C----HHHHHHHHHHEEE---EEEEEECCCC
T ss_pred ----C----HHHHHHHHHHhcc---CCceEecccc
Confidence 1 2378899999999 8998887643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.24 E-value=2.9 Score=31.47 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=59.2
Q ss_pred cCCCCeEEEeCCCc-chHHHHHHHHCCCCeEEEeeccc-ccccCCCCCCceEe---eCCCC-C------CCCCccEEEEc
Q 018205 192 FQGLGSLVDVGGGT-GSFARIISEAFPGIKCTVLDLPH-VVPKVPDTDNLKFI---AGDMF-Q------SIPPADAFFFK 259 (359)
Q Consensus 192 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~~v~~~---~~d~~-~------~~p~~D~i~~~ 259 (359)
..+..+|+=+|||. |..+..+++.....+++++|..+ -++.+++..--.++ ..|.. . .-.++|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 56778999999986 45667777776556899999944 66666643322222 22321 0 01248887743
Q ss_pred chhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeecCC
Q 018205 260 AIFHAFVDEDCLKILKRCREAIASRGDRGKVIIIDIVINE 299 (359)
Q Consensus 260 ~vl~~~~~~~~~~~L~~~~~~L~p~~~gG~lli~~~~~~~ 299 (359)
-. . ...+......+++ ++|.++++-...++
T Consensus 105 ~g-----~---~~~~~~~~~~~~~--~~G~~v~vG~~~~~ 134 (174)
T d1p0fa2 105 AG-----R---IETMMNALQSTYC--GSGVTVVLGLASPN 134 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCT--TTCEEEECCCCCTT
T ss_pred CC-----C---chHHHHHHHHHHH--hcCceEEEEEecCc
Confidence 21 1 2366677777765 15888887754443
|
| >d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Putative arsenical resistance operon repressor AF0168 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.22 E-value=0.65 Score=29.68 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHHHHhcCcchhcccCCCCCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeecccccccCccceEecccccc
Q 018205 31 SLKCAVELDIPEVIHKHGRPITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTANVQSAQQQEEEAYALTLTSK 106 (359)
Q Consensus 31 ~l~~a~~lglf~~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~~~~~~~~~~~~~~~t~~~~ 106 (359)
++..-++-.++..|.+ +.+-+||-+.+++ .+.-+...|.+|. .|+.-+.. ++.|+.|..++
T Consensus 27 av~nPvRrkiLrmi~k---grsedEIm~~l~L---SkkqldYHLk~LE-~GfciErv--------ge~w~~T~~G~ 87 (89)
T d1y0ua_ 27 AVTNPVRRKILRMLDK---GRSEEEIMQTLSL---SKKQLDYHLKVLE-AGFCIERV--------GERWVVTDAGK 87 (89)
T ss_dssp HHSCHHHHHHHHHHHT---TCCHHHHHHHHTC---CHHHHHHHHHHHH-HTTSEEEE--------TTEEEECTTTC
T ss_pred HHhhHHHHHHHHHHHc---cCCHHHHHHHhcc---CHHHHHHHHHHHH-ccceeEec--------CCceeeccccc
Confidence 3444455566666764 8899999999999 6888999999998 55654443 68999987664
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=80.18 E-value=0.96 Score=29.46 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCCHHHHHHhcCCCCCCcccHHHHHHHHHccCceeeec
Q 018205 50 PITLPQLVSALEINPTKADGLFKLMRLLVHTGFFSTAN 87 (359)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~gll~~~~ 87 (359)
|+|-+|||.-+|+ ....+.|.|+.|...|+++...
T Consensus 30 ~~t~~eiA~~lG~---sretvsr~l~~l~~~g~I~~~~ 64 (80)
T d1ft9a1 30 DFTVEEIANLIGS---SRQTTSTALNSLIKEGYISRQG 64 (80)
T ss_dssp CCCHHHHHHHHCS---CHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEECC
Confidence 8899999999999 6799999999999999999763
|