Citrus Sinensis ID: 018217

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
ccEEEEEEEcEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEccccccEEEEEEEEEcccccEEEEEccccccccccccccEEEEEEEEEccccccccccccccccccEEEEEEEEcccccccEEEEEEEEEEEEcccccccccccccEEEEcccEEEcccccccccccccccccccEEEccEEEEEEEEEEcc
ccHHHHHEcccEEEccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHcccccccHccHHHHHcccccccEEEEEcccccEEEEEEEccHHHHHHHcccccEEEEcEEcccccEEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEEEccccccEEEEEcccEEEccccccccccccccccHHHHcccccEEEccEEEEEEEEEEcc
mellnfmysntlsttaAPALLDVLMAADKFEVASCMRYCSRllrnmpmtpeSALLYLelpssvlmgeavqPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAIlssddlqiasEDAVYDFVLKWARAQYPRVEERREVLGSRLARfirfphmtcRKLKKvltcndfdhDVASKLVLEALFFkaeaphrqrtlaaeESVTLNRRFVEraykyrpvkvveferprqqCVVYLDLKreecenlfpsgrvysqafhlggqgfflsahcnmdqqssfhcfglflgmqekgsvSFAVDYefaarskpteefvskykgnytftggkavgyrnlfaipwtsfmaddsLYFINGILHLRAELTIRH
MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARaqyprveerrEVLGsrlarfirfphmtCRKLKKVLTCNDFDHDVASKLVLEALFFKAeaphrqrtlaaeesvtlnrrfveraykyrpvkvveferprqQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAarskpteefvskyKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
***LNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELT***
MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFF*********************RFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR*
MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
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SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECENLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q9FPW6561 BTB/POZ domain-containing yes no 0.997 0.638 0.868 0.0
O82343561 BTB/POZ domain-containing no no 0.997 0.638 0.874 0.0
O04615527 BTB/POZ domain-containing no no 0.997 0.679 0.646 1e-131
Q5U374 564 Kelch-like protein 12 OS= yes no 0.584 0.372 0.245 1e-05
Q6NRH0 564 Kelch-like protein 12 OS= N/A no 0.701 0.446 0.216 5e-05
Q8NFY9 601 Kelch repeat and BTB doma yes no 0.415 0.247 0.254 9e-05
Q3ZB90 623 Kelch repeat and BTB doma no no 0.512 0.295 0.248 9e-05
Q53G59 568 Kelch-like protein 12 OS= no no 0.587 0.371 0.221 0.0001
O94889 574 Kelch-like protein 18 OS= no no 0.387 0.242 0.28 0.0002
Q8BZM0 568 Kelch-like protein 12 OS= no no 0.587 0.371 0.221 0.0002
>sp|Q9FPW6|POB1_ARATH BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2 Back     alignment and function desciption
 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/358 (86%), Positives = 339/358 (94%)

Query: 1   MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP 60
           MELLNFMYSN +S T APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP
Sbjct: 199 MELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP 258

Query: 61  SSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVY 120
           SSVLM +AVQPLTDAA+Q+LA+RYKD+TKF +EVM+LPLAG+EAILSSD+LQIASEDAVY
Sbjct: 259 SSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPLAGIEAILSSDELQIASEDAVY 318

Query: 121 DFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEA 180
           DF+LKWARAQYP +EERRE+LGSRLA  IRFP MTCRKLKKVLTC+DF+H++ASKLVLEA
Sbjct: 319 DFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKLKKVLTCSDFEHEIASKLVLEA 378

Query: 181 LFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECE 240
           LFFKAEAPHRQR+LA+EES +LNRR +ERAYKYRPVKVVEFE PR QCVVYLDLKREEC 
Sbjct: 379 LFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVVEFELPRPQCVVYLDLKREECG 438

Query: 241 NLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 300
            LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSF VDYEF+AR
Sbjct: 439 GLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFSAR 498

Query: 301 SKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR 358
           SKP E+F+SKYKGNYTFTGGKAVGYRNLF +PWTSF+A+DS YFINGILHLRAELTI+
Sbjct: 499 SKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAELTIK 556
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|O82343|Y2626_ARATH BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2 Back     alignment and function description
>sp|O04615|Y4116_ARATH BTB/POZ domain-containing protein At4g01160 OS=Arabidopsis thaliana GN=At4g01160 PE=3 SV=1 Back     alignment and function description
>sp|Q5U374|KLH12_DANRE Kelch-like protein 12 OS=Danio rerio GN=klhl12 PE=2 SV=2 Back     alignment and function description
>sp|Q6NRH0|KLH12_XENLA Kelch-like protein 12 OS=Xenopus laevis GN=klhl12 PE=2 SV=2 Back     alignment and function description
>sp|Q8NFY9|KBTB8_HUMAN Kelch repeat and BTB domain-containing protein 8 OS=Homo sapiens GN=KBTBD8 PE=2 SV=2 Back     alignment and function description
>sp|Q3ZB90|KBTBC_DANRE Kelch repeat and BTB domain-containing protein 12 OS=Danio rerio GN=kbtbd12 PE=2 SV=1 Back     alignment and function description
>sp|Q53G59|KLH12_HUMAN Kelch-like protein 12 OS=Homo sapiens GN=KLHL12 PE=1 SV=2 Back     alignment and function description
>sp|O94889|KLH18_HUMAN Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE=2 SV=3 Back     alignment and function description
>sp|Q8BZM0|KLH12_MOUSE Kelch-like protein 12 OS=Mus musculus GN=Klhl12 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255541774 549 atpob1, putative [Ricinus communis] gi|2 1.0 0.653 0.922 0.0
224064139 556 predicted protein [Populus trichocarpa] 1.0 0.645 0.919 0.0
297745384 501 unnamed protein product [Vitis vinifera] 1.0 0.716 0.902 0.0
224127832 547 predicted protein [Populus trichocarpa] 0.997 0.654 0.913 0.0
225454420 553 PREDICTED: BTB/POZ domain-containing pro 1.0 0.649 0.902 0.0
449432076 553 PREDICTED: BTB/POZ domain-containing pro 1.0 0.649 0.913 0.0
356573187 553 PREDICTED: BTB/POZ domain-containing pro 0.997 0.647 0.908 0.0
356506034 553 PREDICTED: BTB/POZ domain-containing pro 0.997 0.647 0.902 0.0
307136357 552 ATPOB protein binding [Cucumis melo subs 0.994 0.646 0.910 0.0
358346304 591 Kelch-like protein [Medicago truncatula] 1.0 0.607 0.899 0.0
>gi|255541774|ref|XP_002511951.1| atpob1, putative [Ricinus communis] gi|223549131|gb|EEF50620.1| atpob1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/359 (92%), Positives = 349/359 (97%)

Query: 1   MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP 60
           MELLNFMYSN+LST  AP LLDVLMAADKFEVASCMRYCSR LRNM MTPESALLYLELP
Sbjct: 191 MELLNFMYSNSLSTNTAPGLLDVLMAADKFEVASCMRYCSRQLRNMSMTPESALLYLELP 250

Query: 61  SSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVY 120
           SSVLM EAVQPLTDAA+QYLASRY+DMTK+Q+EVM+LPLAG+EAILSSDDLQ+ASEDAVY
Sbjct: 251 SSVLMAEAVQPLTDAAKQYLASRYRDMTKYQEEVMSLPLAGIEAILSSDDLQVASEDAVY 310

Query: 121 DFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEA 180
           DFVLKWAR QYP++EERREVLG+RLARFIRFP+MTCRKLKKVLTC+DFDHDVASKLVLEA
Sbjct: 311 DFVLKWARTQYPKLEERREVLGARLARFIRFPYMTCRKLKKVLTCSDFDHDVASKLVLEA 370

Query: 181 LFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECE 240
           LFFKAEAPHRQR+LAAEES +LNRRFVERAYKYRPVKVVEFE PRQQCVVYLDLKREEC 
Sbjct: 371 LFFKAEAPHRQRSLAAEESASLNRRFVERAYKYRPVKVVEFELPRQQCVVYLDLKREECA 430

Query: 241 NLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 300
           NLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG+VSFAVDYEFAAR
Sbjct: 431 NLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGNVSFAVDYEFAAR 490

Query: 301 SKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH 359
           +KPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFING+LHLRAELTIRH
Sbjct: 491 AKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGVLHLRAELTIRH 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064139|ref|XP_002301391.1| predicted protein [Populus trichocarpa] gi|222843117|gb|EEE80664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297745384|emb|CBI40464.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127832|ref|XP_002320175.1| predicted protein [Populus trichocarpa] gi|222860948|gb|EEE98490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225454420|ref|XP_002279915.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432076|ref|XP_004133826.1| PREDICTED: BTB/POZ domain-containing protein At2g46260-like [Cucumis sativus] gi|449480287|ref|XP_004155851.1| PREDICTED: BTB/POZ domain-containing protein At2g46260-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356573187|ref|XP_003554745.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] Back     alignment and taxonomy information
>gi|356506034|ref|XP_003521793.1| PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] Back     alignment and taxonomy information
>gi|307136357|gb|ADN34171.1| ATPOB protein binding [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|358346304|ref|XP_003637209.1| Kelch-like protein [Medicago truncatula] gi|355503144|gb|AES84347.1| Kelch-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2082827561 POB1 "POZ/BTB containin G-prot 0.997 0.638 0.868 4e-170
TAIR|locus:2063026561 LRB1 "light-response BTB 1" [A 0.997 0.638 0.874 9.4e-169
ZFIN|ZDB-GENE-041114-205 564 klhl12 "kelch-like 12 (Drosoph 0.584 0.372 0.261 2.6e-06
UNIPROTKB|O60662 606 KLHL41 "Kelch-like protein 41" 0.504 0.298 0.233 3.8e-05
UNIPROTKB|Q6NRH0 564 klhl12 "Kelch-like protein 12" 0.590 0.375 0.255 4.4e-05
UNIPROTKB|Q53G59 568 KLHL12 "Kelch-like protein 12" 0.590 0.373 0.246 4.4e-05
ZFIN|ZDB-GENE-050904-1 623 kbtbd12 "kelch repeat and BTB 0.512 0.295 0.253 5e-05
MGI|MGI:2385619 568 Klhl12 "kelch-like 12" [Mus mu 0.590 0.373 0.246 5.7e-05
UNIPROTKB|F1S4N0 606 KLHL12 "Uncharacterized protei 0.590 0.349 0.246 6.2e-05
UNIPROTKB|A4FV78 606 KBTBD10 "Uncharacterized prote 0.406 0.240 0.251 8e-05
TAIR|locus:2082827 POB1 "POZ/BTB containin G-protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1654 (587.3 bits), Expect = 4.0e-170, P = 4.0e-170
 Identities = 311/358 (86%), Positives = 339/358 (94%)

Query:     1 MELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP 60
             MELLNFMYSN +S T APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP
Sbjct:   199 MELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELP 258

Query:    61 SSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVY 120
             SSVLM +AVQPLTDAA+Q+LA+RYKD+TKF +EVM+LPLAG+EAILSSD+LQIASEDAVY
Sbjct:   259 SSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPLAGIEAILSSDELQIASEDAVY 318

Query:   121 DFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFDHDVASKLVLEA 180
             DF+LKWARAQYP +EERRE+LGSRLA  IRFP MTCRKLKKVLTC+DF+H++ASKLVLEA
Sbjct:   319 DFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKLKKVLTCSDFEHEIASKLVLEA 378

Query:   181 LFFKAEAPHRQRTLAAEESVTLNRRFVERAYKYRPVKVVEFERPRQQCVVYLDLKREECE 240
             LFFKAEAPHRQR+LA+EES +LNRR +ERAYKYRPVKVVEFE PR QCVVYLDLKREEC 
Sbjct:   379 LFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVVEFELPRPQCVVYLDLKREECG 438

Query:   241 NLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAAR 300
              LFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSF VDYEF+AR
Sbjct:   439 GLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFSAR 498

Query:   301 SKPTEEFVSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR 358
             SKP E+F+SKYKGNYTFTGGKAVGYRNLF +PWTSF+A+DS YFINGILHLRAELTI+
Sbjct:   499 SKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAELTIK 556
GO:0005737 "cytoplasm" evidence=ISM
GO:0009954 "proximal/distal pattern formation" evidence=RCA
GO:0010227 "floral organ abscission" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0010114 "response to red light" evidence=IGI
GO:0042803 "protein homodimerization activity" evidence=IPI
GO:0046982 "protein heterodimerization activity" evidence=IPI
TAIR|locus:2063026 LRB1 "light-response BTB 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-205 klhl12 "kelch-like 12 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O60662 KLHL41 "Kelch-like protein 41" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NRH0 klhl12 "Kelch-like protein 12" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q53G59 KLHL12 "Kelch-like protein 12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050904-1 kbtbd12 "kelch repeat and BTB (POZ) domain containing 12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2385619 Klhl12 "kelch-like 12" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4N0 KLHL12 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV78 KBTBD10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPW6POB1_ARATHNo assigned EC number0.86870.99720.6381yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026970001
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (503 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
smart00875101 smart00875, BACK, BTB And C-terminal Kelch 3e-10
pfam07707101 pfam07707, BACK, BTB And C-terminal Kelch 7e-10
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 4e-05
cd13342147 cd13342, PH-GRAM_MTMR4, Myotubularian (MTM) relate 2e-04
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch Back     alignment and domain information 
 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 70  QPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARA 129
           + L + A +++   + +++   +E + LPL  +  +LSSDDL ++SE+ V++ VL+W + 
Sbjct: 14  EELAEKALRFILQNFSEVSS-SEEFLELPLEQLLELLSSDDLNVSSEEEVFEAVLRWVKH 72

Query: 130 QYPRVEERREVLGSRLARFIRFPHMT 155
                E+RRE L   L   +R P ++
Sbjct: 73  D---PEKRREHL-PELLEHVRLPLLS 94

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. Length = 101
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|241496 cd13342, PH-GRAM_MTMR4, Myotubularian (MTM) related 4 protein (MTMR4) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 100.0
PHA02713557 hypothetical protein; Provisional 100.0
PHA02790480 Kelch-like protein; Provisional 100.0
PHA03098534 kelch-like protein; Provisional 100.0
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 99.84
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 99.77
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.7
KOG2075521 consensus Topoisomerase TOP1-interacting protein B 99.6
KOG4682488 consensus Uncharacterized conserved protein, conta 99.2
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.9
KOG4591280 consensus Uncharacterized conserved protein, conta 98.81
PHA02713557 hypothetical protein; Provisional 98.6
PHA03098534 kelch-like protein; Provisional 98.39
PHA02790480 Kelch-like protein; Provisional 98.16
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 97.57
KOG0783 1267 consensus Uncharacterized conserved protein, conta 97.48
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.42
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.36
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.08
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.07
smart0061247 Kelch Kelch domain. 97.05
PLN02153341 epithiospecifier protein 96.83
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 96.81
PLN02193470 nitrile-specifier protein 96.5
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 96.48
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 96.01
KOG4693 392 consensus Uncharacterized conserved protein, conta 95.56
PLN02153341 epithiospecifier protein 95.54
PF1396450 Kelch_6: Kelch motif 94.99
PF1385442 Kelch_5: Kelch motif 94.43
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 93.99
KOG4693392 consensus Uncharacterized conserved protein, conta 93.97
PLN02193470 nitrile-specifier protein 93.94
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 93.37
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 93.09
PF1396450 Kelch_6: Kelch motif 92.67
PF1341549 Kelch_3: Galactose oxidase, central domain 92.59
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 92.21
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 92.13
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 92.07
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 91.97
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 91.7
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 91.01
KOG4350 620 consensus Uncharacterized conserved protein, conta 90.8
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 90.2
PLN02772 398 guanylate kinase 88.07
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 86.84
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 86.46
KOG1230 521 consensus Protein containing repeated kelch motifs 84.48
PF11822317 DUF3342: Domain of unknown function (DUF3342); Int 81.9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-48  Score=396.79  Aligned_cols=317  Identities=21%  Similarity=0.354  Sum_probs=263.3

Q ss_pred             ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217            2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA   81 (359)
Q Consensus         2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~   81 (359)
                      .||+|+|||++.|++ +||++||.||++|||+.++++|++||.+ +|+++||++|+.||+.|    +|++|.+.|..||.
T Consensus        90 ~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~a~~~----~~~~L~~~a~~~i~  163 (571)
T KOG4441|consen   90 LLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRFAELH----SCTELLEVADEYIL  163 (571)
T ss_pred             HHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhc----CcHHHHHHHHHHHH
Confidence            479999999999998 9999999999999999999999999999 89999999999999965    99999999999999


Q ss_pred             cchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCCHHHHHh
Q 018217           82 SRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKK  161 (359)
Q Consensus        82 ~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~~~~L~~  161 (359)
                      +||.++.+ ++||++||.+++..||++|+|+|.+|+.||+|+++|++||   .++|++++ +.||++||||+|++++|.+
T Consensus       164 ~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~~~-~~ll~~vr~~ll~~~~l~~  238 (571)
T KOG4441|consen  164 QHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREEHL-PALLEAVRLPLLPPQFLVE  238 (571)
T ss_pred             HHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHHHH-HHHHHhcCccCCCHHHHHH
Confidence            99999999 9999999999999999999999999999999999999999   88899999 9999999999999999999


Q ss_pred             hhccCCCCc--hhHHHHHHHHHHhhhcCccccccccccccccCCCc-ceeEEEEecC-------CCeEEEeeCCCCceEe
Q 018217          162 VLTCNDFDH--DVASKLVLEALFFKAEAPHRQRTLAAEESVTLNRR-FVERAYKYRP-------VKVVEFERPRQQCVVY  231 (359)
Q Consensus       162 ~~~~~~l~~--~~c~~li~ea~~~~~~~~~~~~~l~~~~~~p~~R~-~~~~i~v~~~-------~~~v~~ydp~~~~W~~  231 (359)
                      .+...+++.  ..|++++.+|++||..| .+++.++.++++|  |+ ..+.|++.|+       ...+++|||.++.|..
T Consensus       239 ~v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~~~~~~~t~~--r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~  315 (571)
T KOG4441|consen  239 IVESEPLIKRDSACRDLLDEAKKYHLLP-QRRPVMQSPRTRP--RRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS  315 (571)
T ss_pred             HHhhhhhhccCHHHHHHHHHHHHHhhCc-ccCccccCCCccc--CcCCCCeEEEECCCCCCCcccceeEEecCCcCcEee
Confidence            999988774  68999999999999986 4556689999999  84 4477777322       4689999999999999


Q ss_pred             ---ccCCCcceEEEeeCCcEEEeeeeeCCcc---cccc-------------cccccCCCCCceeeeeEE--ee----e-c
Q 018217          232 ---LDLKREECENLFPSGRVYSQAFHLGGQG---FFLS-------------AHCNMDQQSSFHCFGLFL--GM----Q-E  285 (359)
Q Consensus       232 ---m~~~R~~~~v~v~~g~iY~~~f~~gG~~---~~l~-------------~~c~~~~~~~~~~~~~~~--g~----~-~  285 (359)
                         ||.+|.++++++++|+||+    +||++   ..+.             ...+|.+.  ++.+|+..  |.    + .
T Consensus       316 ~a~m~~~r~~~~~~~~~~~lYv----~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~~~~v~~l~g~iYavGG~  389 (571)
T KOG4441|consen  316 LAPMPSPRCRVGVAVLNGKLYV----VGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RSDFGVAVLDGKLYAVGGF  389 (571)
T ss_pred             cCCCCcccccccEEEECCEEEE----EccccCCCcccceEEEecCCCCceeccCCccCc--cccceeEEECCEEEEEecc
Confidence               8999999999999999999    66655   1222             22366644  44455332  33    2 2


Q ss_pred             cCcee-eEEE-eeeeecc----------CcccccccccceeEEeeCC-------cccccccCCCCCCceeee
Q 018217          286 KGSVS-FAVD-YEFAARS----------KPTEEFVSKYKGNYTFTGG-------KAVGYRNLFAIPWTSFMA  338 (359)
Q Consensus       286 ~~~~~-~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~w~~~~~  338 (359)
                      ++... -+|| |++....          +..-.-++.....|.++|.       .+++|+||.+-.|+..-.
T Consensus       390 dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~  461 (571)
T KOG4441|consen  390 DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP  461 (571)
T ss_pred             ccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC
Confidence            44444 5678 8874443          2222333344555555552       279999999999987654

>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13854 Kelch_5: Kelch motif Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 8e-16
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 8e-05
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 17/184 (9%)

Query: 2   ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPS 61
            ++ +MY+  +  +      +VL  AD+F +     +C   L+   +   + +    L  
Sbjct: 95  AVIEYMYTGRIRVSTGSVH-EVLELADRFLLIRLKEFCGEFLKKK-LHLSNCVAIHSL-- 150

Query: 62  SVLMGEA--VQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAV 119
                    +  L   A   +   +  + +  +E   LP   +   LS  ++ + SE+ +
Sbjct: 151 ----AHMYTLSQLALKAADMIRRNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVL 205

Query: 120 YDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDF--DHDVASKLV 177
           ++ VLKW +      EER       L + +R   M    L + +       +++V  KLV
Sbjct: 206 FETVLKWVQRN---AEERERYF-EELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLV 261

Query: 178 LEAL 181
            +A+
Sbjct: 262 ADAV 265
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 99.86
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.44
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.25
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.0
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 98.61
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 98.52
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.47
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.39
2vpk_A116 Myoneurin; transcription regulation, transcription 98.37
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 98.35
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.34
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.28
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.28
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.25
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.25
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 98.21
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 98.16
3ii7_A 306 Kelch-like protein 7; protein-binding, kelch-repea 97.99
2xn4_A 302 Kelch-like protein 2; structural protein, cytoskel 97.78
2vpj_A 301 Kelch-like protein 12; adaptor protein, WNT signal 97.73
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 97.69
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.61
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 97.48
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 97.45
1zgk_A 308 Kelch-like ECH-associated protein 1; beta-propelle 97.26
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 97.19
4asc_A 315 Kelch repeat and BTB domain-containing protein 5; 97.16
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 97.09
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 97.09
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 97.06
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 97.01
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 96.99
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 96.89
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 96.76
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 96.7
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 96.6
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 96.23
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 96.21
3hqi_A 312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 95.59
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 94.08
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.78
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 91.28
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 89.32
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 83.61
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 83.43
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 82.08
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
Probab=100.00  E-value=2.9e-35  Score=276.89  Aligned_cols=177  Identities=20%  Similarity=0.399  Sum_probs=169.2

Q ss_pred             ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccCCCCChhhHHHHHHhccccccccChHHHHHHHHHHHh
Q 018217            2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLA   81 (359)
Q Consensus         2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~~~l~~~Ncl~i~~~A~~~~~~~~~~~L~~~a~~fi~   81 (359)
                      .+|+|||||++.++. +||.+++.+|++||++.+++.|++||.+ .++++||++++.+|+.|    ++.+|.+.|.+||.
T Consensus        95 ~ll~~~Ytg~~~i~~-~~v~~ll~~A~~l~i~~L~~~c~~~L~~-~l~~~n~~~i~~~A~~~----~~~~L~~~~~~~i~  168 (279)
T 3i3n_A           95 AVIEYMYTGRIRVST-GSVHEVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHMY----TLSQLALKAADMIR  168 (279)
T ss_dssp             HHHHHHHHSEEEEET-TTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCTTTHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred             HHHHhhCcCCcccCH-HHHHHHHHHHHHHCcHHHHHHHHHHHHH-cCCcchHHHHHHHHHHc----CcHHHHHHHHHHHH
Confidence            478999999999998 9999999999999999999999999999 89999999999999966    99999999999999


Q ss_pred             cchhhhhcccccccccCHHHHHHHhcCCCcccCChHHHHHHHHHhhhhcCCChHHHHHHHhHhhhccccCCCCCHHHHHh
Q 018217           82 SRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFPHMTCRKLKK  161 (359)
Q Consensus        82 ~nf~~v~~~~~eFl~L~~~~l~~lL~sd~L~V~sE~~Vf~avl~Wv~~d~~~~~~R~~~l~~~LL~~VRf~ll~~~~L~~  161 (359)
                      +||.++.+ +++|++||.+.+..||++|+|+|.+|++||+|+++|++|+   +++|.+++ ++||++||||+|++++|.+
T Consensus       169 ~~f~~v~~-~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~---~~~r~~~~-~~ll~~VRf~l~~~~~L~~  243 (279)
T 3i3n_A          169 RNFHKVIQ-DEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRN---AEERERYF-EELFKLLRLSQMKPTYLTR  243 (279)
T ss_dssp             HTHHHHTT-SSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTT---HHHHTTTH-HHHHTTSCGGGSCHHHHHH
T ss_pred             HHHHHHhc-CcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcC---HHHHHHHH-HHHHHhcCCCCCCHHHHHH
Confidence            99999999 9999999999999999999999999999999999999999   89999999 8999999999999999999


Q ss_pred             hhccCCCCc--hhHHHHHHHHHHhhhcCcc
Q 018217          162 VLTCNDFDH--DVASKLVLEALFFKAEAPH  189 (359)
Q Consensus       162 ~~~~~~l~~--~~c~~li~ea~~~~~~~~~  189 (359)
                      .+++++++.  +.|++++.+|++||..|.+
T Consensus       244 ~v~~~~l~~~~~~c~~~l~ea~~~~~~~~e  273 (279)
T 3i3n_A          244 HVKPERLVANNEVCVKLVADAVERHALRAE  273 (279)
T ss_dssp             TTTTSHHHHTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhccchhcCCHHHHHHHHHHHHhccCchh
Confidence            999888874  6899999999999998643
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.5
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.4
d1zgka1 288 Kelch-like ECH-associated protein 1, KEAP1 {Human 97.24
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.45
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 95.97
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 95.9
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 94.53
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.14
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 91.59
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5.9e-09  Score=83.45  Aligned_cols=43  Identities=30%  Similarity=0.538  Sum_probs=40.9

Q ss_pred             ceeeeEeeCeEeeCCcchHHHHHHHhhccChhhHHHHHHHHccC
Q 018217            2 ELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRN   45 (359)
Q Consensus         2 ~lL~y~YTg~i~i~~~~nV~~lL~aA~~lqv~~l~~~C~~fL~~   45 (359)
                      .+|+|||||++.++. +|+.+++.+|++|+++.+++.|++||++
T Consensus        77 ~ll~~~Ytg~i~l~~-~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          77 QILEYAYTATLQAKA-EDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHHHHHSCCCCCG-GGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHheEccccCCcH-HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            479999999999998 9999999999999999999999999975
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure