Citrus Sinensis ID: 018221

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQNQGS
ccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEcccccccEEccccccccccccccccccHHHHHHHHHHccccccccccHHccccccc
cccHHHHcccccccHHHHHHHHHcccccccHHcEccccccccccccccccccccEEEHHHcccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEEEEccccccHHHHEEEEccccHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccccHHHHHHHHHHHccccccHHHHHEEccccc
MEAKATVIgsslvepsildlannqplttvpprfvrleidhplirnddtstqqlpvidmhrllsgddseleKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFfnlpidekkkfwqqpgdsegfgqhFIASeeqkldwgygftmvtlpthlrkphlfpklplpfrddlEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAfrmnyyppclqpekvvghnshcdaSALTVLLQINEmdglqikkdgkwvavkplpdafvVNIGDVLeiltngtypsiehratvNSVKERLSLatfyspkldgelgpatsliapktpalfkRISVVDHLKIFFsselrgksfVDFLRIQNQGS
meakatvigsslvepsildlannqplttvppRFVRLEIDHPlirnddtstqqlpvIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILtngtypsiehratvnsvKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFsselrgksfvdflriqnqgs
MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPThlrkphlfpklplpfrDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQNQGS
************VEPSILDLANNQPLTTVPPRFVRLEIDHPLIRND****QQLPVIDMHRLLSG***ELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMD**DMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRI*****
***************SIL*LAN*****TVPPRFVRLEID*********STQQLPVIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKK**QQ*GDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVD**RI*****
********GSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQNQGS
**********SLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQ****
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MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHRLLSGDDSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQNQGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.986 0.988 0.553 1e-116
D4N502360 Codeine O-demethylase OS= N/A no 0.961 0.958 0.525 1e-104
D4N501364 Probable 2-oxoglutarate/F N/A no 0.966 0.953 0.5 1e-101
D4N500364 Thebaine 6-O-demethylase N/A no 0.969 0.956 0.512 1e-100
A2A1A0352 S-norcoclaurine synthase N/A no 0.966 0.985 0.398 2e-66
O04705361 Gibberellin 20 oxidase 1- N/A no 0.866 0.861 0.330 1e-46
O04706365 Gibberellin 20 oxidase 1- N/A no 0.866 0.852 0.330 1e-46
O04707365 Gibberellin 20 oxidase 1- N/A no 0.866 0.852 0.327 2e-46
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.835 0.831 0.350 7e-45
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.835 0.831 0.331 1e-44
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/358 (55%), Positives = 269/358 (75%), Gaps = 4/358 (1%)

Query: 1   MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHR 60
           MEAK     SS++ PS+ ++   + +TTVPPR+VR + D   + +D     ++P+IDM R
Sbjct: 1   MEAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKR 60

Query: 61  LLSGD--DSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQ 118
           L S    DSE+EKLD  CKEWGFFQL+NHG+ SS ++KVK+EIQDFFNLP++EKKKFWQ+
Sbjct: 61  LCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQR 120

Query: 119 PGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKN 178
           P + EGFGQ F+ SE+QKLDW   F     P  LRKPHLFPKLPLPFRD LE+YS+E+++
Sbjct: 121 PDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQS 180

Query: 179 LTLKILDQMAKALRMDPNDMEELFE--NGMQAFRMNYYPPCLQPEKVVGHNSHCDASALT 236
           +   ++ +MA+AL + P ++E+LF+  + +Q+ RMNYYPPC QP++V+G   H D+  LT
Sbjct: 181 VAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLT 240

Query: 237 VLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKER 296
           VL+Q+N+++GLQIKKDGKWV VKPLP+AF+VNIGDVLEI+TNGTY SIEHR  VNS KER
Sbjct: 241 VLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKER 300

Query: 297 LSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRI 354
           LS+ATF++  +  E+GPA SL+  +  A FKR+++ ++    FS  L GK+++D LRI
Sbjct: 301 LSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 0.980 0.961 0.624 1e-131
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.952 0.939 0.631 1e-129
224061027362 predicted protein [Populus trichocarpa] 0.980 0.972 0.617 1e-126
359483589361 PREDICTED: LOW QUALITY PROTEIN: protein 0.972 0.966 0.612 1e-124
224061385355 predicted protein [Populus trichocarpa] 0.983 0.994 0.592 1e-123
255557461360 Flavonol synthase/flavanone 3-hydroxylas 0.983 0.980 0.620 1e-123
449434270358 PREDICTED: protein SRG1-like [Cucumis sa 0.947 0.949 0.611 1e-122
147776748395 hypothetical protein VITISV_032872 [Viti 0.952 0.865 0.571 1e-122
224061381359 predicted protein [Populus trichocarpa] 0.986 0.986 0.592 1e-122
297734657316 unnamed protein product [Vitis vinifera] 0.852 0.968 0.659 1e-121
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/357 (62%), Positives = 283/357 (79%), Gaps = 5/357 (1%)

Query: 4   KATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDT--STQQLPVIDMHRL 61
           K T +G SL+ PS+ +LA  + LTTVPPR++R E D P + +  T  S+  +PVID HRL
Sbjct: 5   KLTSLGGSLMVPSVQELAK-KTLTTVPPRYLRPEQDPPFLSDSSTTCSSIHVPVIDFHRL 63

Query: 62  LSGD--DSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQP 119
           +SGD  DSEL+KL   CK+WGFFQL NHGVSS+LVE+VK E+Q+FFNLP++EKKKFWQ+P
Sbjct: 64  VSGDVLDSELDKLHYACKDWGFFQLTNHGVSSTLVERVKVEVQEFFNLPMEEKKKFWQEP 123

Query: 120 GDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNL 179
            D EGFGQ F+ SEEQKLDW   F M+TLPT+LRKPHLFPKLP+  RD LE+Y+ E++NL
Sbjct: 124 EDLEGFGQAFVISEEQKLDWADMFYMITLPTYLRKPHLFPKLPISLRDSLEIYAVELRNL 183

Query: 180 TLKILDQMAKALRMDPNDMEELFENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLL 239
            + IL  +AKAL+M+ NDM+ELFE G Q  RMNYYP C QP++V+G   H DA  LT+LL
Sbjct: 184 AMTILGFIAKALKMEANDMKELFEEGHQGMRMNYYPLCPQPDQVIGLTPHSDAVGLTILL 243

Query: 240 QINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSL 299
           Q+NEM+GLQI+KDG WV +KPLP AF+VN+GD+LEI+TN  Y SIEHRATVNS+KERLS+
Sbjct: 244 QVNEMEGLQIRKDGMWVPIKPLPGAFIVNMGDILEIVTNAAYRSIEHRATVNSIKERLSV 303

Query: 300 ATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQN 356
           ATFYSPKL+G++GPA SL++P +P+LFKRI V D+ K  FS EL GKS+++ LR + 
Sbjct: 304 ATFYSPKLNGDMGPAPSLVSPDSPSLFKRIGVADYFKGLFSRELHGKSYLEVLRTET 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061027|ref|XP_002300322.1| predicted protein [Populus trichocarpa] gi|222847580|gb|EEE85127.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483589|ref|XP_003632983.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255557461|ref|XP_002519761.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223541178|gb|EEF42734.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434270|ref|XP_004134919.1| PREDICTED: protein SRG1-like [Cucumis sativus] gi|449479526|ref|XP_004155625.1| PREDICTED: protein SRG1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147776748|emb|CAN72414.1| hypothetical protein VITISV_032872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.986 0.988 0.511 2e-95
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.994 0.988 0.504 1.1e-94
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.986 0.994 0.485 2.7e-91
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.983 0.991 0.484 2.5e-90
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.972 0.988 0.491 2.2e-89
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.944 0.931 0.404 4e-67
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.902 0.917 0.346 9.9e-55
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.924 0.894 0.325 1.2e-51
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.818 0.844 0.343 1.2e-47
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.944 0.933 0.314 2.1e-45
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 183/358 (51%), Positives = 254/358 (70%)

Query:     1 MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHR 60
             MEAK     SS++ PS+ ++   + +TTVPPR+VR + D   + +D     ++P+IDM R
Sbjct:     1 MEAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKR 60

Query:    61 LLSGD--DSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQ 118
             L S    DSE+EKLD  CKEWGFFQL+NHG+ SS ++KVK+EIQDFFNLP++EKKKFWQ+
Sbjct:    61 LCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQR 120

Query:   119 PGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTEIKN 178
             P + EGFGQ F+ SE+QKLDW   F     P                 D LE+YS+E+++
Sbjct:   121 PDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQS 180

Query:   179 LTLKILDQMAKALRMDPNDMEELFEN--GMQAFRMNYYPPCLQPEKVVGHNSHCDASALT 236
             +   ++ +MA+AL + P ++E+LF++   +Q+ RMNYYPPC QP++V+G   H D+  LT
Sbjct:   181 VAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLT 240

Query:   237 VLLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKER 296
             VL+Q+N+++GLQIKKDGKWV VKPLP+AF+VNIGDVLEI+TNGTY SIEHR  VNS KER
Sbjct:   241 VLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKER 300

Query:   297 LSLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRI 354
             LS+ATF++  +  E+GPA SL+  +  A FKR+++ ++    FS  L GK+++D LRI
Sbjct:   301 LSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
D4N502DIOX3_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 20.52540.96100.9583N/Ano
Q39224SRG1_ARATHNo assigned EC number0.55300.98600.9888yesno
D4N500DIOX1_PAPSO1, ., 1, 4, ., 1, 1, ., 3, 10.51220.96930.9560N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
4th Layer1.14.11.11LOW CONFIDENCE prediction!
3rd Layer1.14.11.32LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007249001
SubName- Full=Chromosome undetermined scaffold_186, whole genome shotgun sequence; (366 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-166
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-112
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 8e-92
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-73
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 5e-70
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-67
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 3e-65
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-63
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-62
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-60
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-54
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-52
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 8e-52
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-49
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 8e-49
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 7e-47
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-45
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-43
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-41
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-38
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-36
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-36
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-36
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-31
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-30
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-30
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-11
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  468 bits (1206), Expect = e-166
 Identities = 201/357 (56%), Positives = 266/357 (74%), Gaps = 3/357 (0%)

Query: 1   MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHR 60
           MEAK     SS++ PS+ ++   + +TTVPPR+VR + D   I  D   + ++P+IDM R
Sbjct: 1   MEAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKR 60

Query: 61  LLSGD--DSELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQ 118
           L S    DSE+EKLD  CKEWGFFQL+NHG+ SS ++KVK+EIQDFFNLP++EKKK WQ+
Sbjct: 61  LCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQR 120

Query: 119 PGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKN 178
           PG+ EGFGQ F+ SE+QKLDW   F +   P  LRKPHLFPKLPLPFRD LE YS E+K+
Sbjct: 121 PGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKS 180

Query: 179 LTLKILDQMAKALRMDPNDMEELFENGM-QAFRMNYYPPCLQPEKVVGHNSHCDASALTV 237
           +   +  +MA AL + P +ME+LF++ + Q+ RMNYYPPC QP++V+G   H DA  LT+
Sbjct: 181 IAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTI 240

Query: 238 LLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERL 297
           LLQ+NE++GLQIKKDGKWV+VKPLP+A VVN+GD+LEI+TNGTY SIEHR  VNS KERL
Sbjct: 241 LLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERL 300

Query: 298 SLATFYSPKLDGELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRI 354
           S+ATF++  +  E+GPA SL+  +  ALFK ++  ++    FS EL GK+++D +RI
Sbjct: 301 SVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.88
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.82
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.59
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.31
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.94
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 88.5
TIGR02466201 conserved hypothetical protein. This family consis 85.87
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 81.53
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-88  Score=655.05  Aligned_cols=354  Identities=56%  Similarity=0.979  Sum_probs=311.6

Q ss_pred             CcccccccCCCCCcccHHHHHhcCCCCCCCCCccCCCCCCCCCCCCCCCCCCcceEeCCCCCCCCH--HHHHHHHHHHhh
Q 018221            1 MEAKATVIGSSLVEPSILDLANNQPLTTVPPRFVRLEIDHPLIRNDDTSTQQLPVIDMHRLLSGDD--SELEKLDNTCKE   78 (359)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~p~~yv~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~--~~~~~l~~A~~~   78 (359)
                      |+.++.+.-.....+.||.|+.+.++++||++||+|.+++|.+........+||||||+.+.+++.  +++++|.+||++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~   80 (357)
T PLN02216          1 MEAKGATQWSSIIVPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKE   80 (357)
T ss_pred             CCccccCcCCCccchhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHH
Confidence            455543221123345699997643688999999999999875321111124799999999866543  578999999999


Q ss_pred             cCeEEEEeCCCCHHHHHHHHHHHhhhhCCCHHHHhhccCCCCCccccccCCCCCcccccCcccccccccCCCCCCCCCCC
Q 018221           79 WGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQPGDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLF  158 (359)
Q Consensus        79 ~GfF~v~nhGv~~~l~~~~~~~~~~fF~lP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~w  158 (359)
                      ||||||+||||+.++++++++++++||+||.|+|+++...++..+||+........++.||+|.+++...|.....+|.|
T Consensus        81 ~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~W  160 (357)
T PLN02216         81 WGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLF  160 (357)
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhc
Confidence            99999999999999999999999999999999999997766667899776544445678999999887767656678999


Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHCCCChhhHHHHhhc-cceeeeeeccCCCCCCCCccccccccCCCceeE
Q 018221          159 PKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFEN-GMQAFRMNYYPPCLQPEKVVGHNSHCDASALTV  237 (359)
Q Consensus       159 P~~~~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~~-~~~~lrl~~YPp~~~~~~~~g~~~HtD~~~lTl  237 (359)
                      |+.|+.||+++++|+++|.+|+.+||++|+++|||++++|.+.+.+ ..+.||+||||||++++.++|+++|||+|+|||
T Consensus       161 P~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTl  240 (357)
T PLN02216        161 PKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTI  240 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEE
Confidence            9999999999999999999999999999999999999999998876 357899999999999999999999999999999


Q ss_pred             EEecCCCCCcceecCCeEEEecCCCCeEEEEecccchhccCCcccCccccccCCCCCccceeEeeecCCCCceeecCccc
Q 018221          238 LLQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGELGPATSL  317 (359)
Q Consensus       238 L~q~~~~~GLqV~~~g~W~~V~p~pg~~vVniGD~l~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~  317 (359)
                      |+|+++++||||+++|+|++|+|+||+|||||||+||+||||+|||++|||++++.++|||++||++|+.|++|+|+++|
T Consensus       241 L~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~l  320 (357)
T PLN02216        241 LLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSL  320 (357)
T ss_pred             EEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHH
Confidence            99965799999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             cCCCCCCCCCcccHHHHHHHHHhccCCCCcccccccc
Q 018221          318 IAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRI  354 (359)
Q Consensus       318 v~~~~p~~y~~~~~~ey~~~~~~~~~~g~~~~~~~~~  354 (359)
                      +++++|++|++++++||++.++++.+.|++.++.+||
T Consensus       321 v~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~  357 (357)
T PLN02216        321 VERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI  357 (357)
T ss_pred             cCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence            9999999999999999999999999999999998886

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-41
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-41
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-40
1w9y_A319 The Structure Of Acc Oxidase Length = 319 6e-30
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 8e-10
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 169/326 (51%), Gaps = 16/326 (4%)
Query: 26  LTTVPPRFVR----LE-IDHPLIRNDDTSTQQLPVIDMHRLLSGDD----SELEKLDNTC 76
           + ++P  ++R    LE I+   +        Q+P ID+  + S D+    + +E+L    
Sbjct: 15  IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 77  KEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFW--QQPGDSEGFGQHFIASEE 134
            +WG   LINHG+ + L+E+VK   ++FF+L ++EK+K+   Q  G  +G+G     +  
Sbjct: 75  LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNAS 134
Query: 135 QKLDWGYGFTMVTLPTXXXXXXXXXXXXXXXXDDLEVYSTEIKNLTLKILDQMAKALRMD 194
            +L+W   F  +  P                 +    Y+  ++ L  K+   ++  L ++
Sbjct: 135 GQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194
Query: 195 PNDMEEL---FENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIKK 251
           P+ +E+     E  +   ++NYYP C QPE  +G  +H D SALT +L  N + GLQ+  
Sbjct: 195 PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFY 253
Query: 252 DGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDG-E 310
           +GKWV  K +PD+ V++IGD LEIL+NG Y SI HR  VN  K R+S A F  P  D   
Sbjct: 254 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
Query: 311 LGPATSLIAPKTPALFKRISVVDHLK 336
           L P   +++ ++PA F   +   H++
Sbjct: 314 LKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-147
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-138
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-91
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-77
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-72
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  418 bits (1076), Expect = e-147
 Identities = 110/357 (30%), Positives = 186/357 (52%), Gaps = 21/357 (5%)

Query: 15  PSILDLANNQPLTTVPPRFVRLEIDHPLIRN-----DDTSTQQLPVIDMHRLLSGDDS-- 67
             +  LA +  + ++P  ++R + +   I +           Q+P ID+  + S D+   
Sbjct: 5   ERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63

Query: 68  --ELEKLDNTCKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFW--QQPGDSE 123
              +E+L     +WG   LINHG+ + L+E+VK   ++FF+L ++EK+K+   Q  G  +
Sbjct: 64  ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123

Query: 124 GFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKI 183
           G+G     +   +L+W   F  +  P   R   ++PK P  + +    Y+  ++ L  K+
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183

Query: 184 LDQMAKALRMDPNDMEELF---ENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQ 240
              ++  L ++P+ +E+     E  +   ++NYYP C QPE  +G  +H D SALT +L 
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243

Query: 241 INEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLA 300
            N + GLQ+  +GKWV  K +PD+ V++IGD LEIL+NG Y SI HR  VN  K R+S A
Sbjct: 244 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302

Query: 301 TFYSPKLDG-ELGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKSFVDFLRIQN 356
            F  P  D   L P   +++ ++PA F   +   H++     +L GK   + +  +N
Sbjct: 303 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEELVSEKN 355
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.69
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.75
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 92.1
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 86.96
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.6
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 80.99
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.55
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=8.5e-86  Score=636.64  Aligned_cols=334  Identities=31%  Similarity=0.597  Sum_probs=300.4

Q ss_pred             CcccHHHHHhcCCCCCCCCCccCCCCCCCCCCCC--CC---CCCCcceEeCCCCCCCCH----HHHHHHHHHHhhcCeEE
Q 018221           13 VEPSILDLANNQPLTTVPPRFVRLEIDHPLIRND--DT---STQQLPVIDMHRLLSGDD----SELEKLDNTCKEWGFFQ   83 (359)
Q Consensus        13 ~~~~v~~l~~~~~~~~~p~~yv~~~~~~~~~~~~--~~---~~~~iPvIDls~l~~~~~----~~~~~l~~A~~~~GfF~   83 (359)
                      ++++||+|+++ ++++||++|++|+++++.+...  ..   ...+||||||+.+.+++.    +.+++|.+||++|||||
T Consensus         3 ~~~~v~~l~~~-~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~   81 (356)
T 1gp6_A            3 AVERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMH   81 (356)
T ss_dssp             CCCCHHHHHHT-TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             CcccHHHHHhc-CCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEE
Confidence            45679999999 8999999999998887753220  00   123699999999876554    26799999999999999


Q ss_pred             EEeCCCCHHHHHHHHHHHhhhhCCCHHHHhhccCCC--CCccccccCCCCCcccccCcccccccccCCCCCCCCCCCCCC
Q 018221           84 LINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQP--GDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKL  161 (359)
Q Consensus        84 v~nhGv~~~l~~~~~~~~~~fF~lP~eeK~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~  161 (359)
                      |+||||+.++++++++.+++||+||.|+|+++....  ..++||+........++.||+|.|++...|......|.||+.
T Consensus        82 v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~  161 (356)
T 1gp6_A           82 LINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT  161 (356)
T ss_dssp             EESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCc
Confidence            999999999999999999999999999999998754  368999877655556788999999998766544567999999


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHCCCChhhHHHHhh---ccceeeeeeccCCCCCCCCccccccccCCCceeEE
Q 018221          162 PLPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFE---NGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVL  238 (359)
Q Consensus       162 ~~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lrl~~YPp~~~~~~~~g~~~HtD~~~lTlL  238 (359)
                      ++.||+.+++|+++|.+|+.+||++|+++||+++++|.+.+.   ...+.||+||||||++++..+|+++|||+|+||||
T Consensus       162 ~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL  241 (356)
T 1gp6_A          162 PSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFI  241 (356)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEE
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEE
Confidence            999999999999999999999999999999999999999987   46788999999999999999999999999999999


Q ss_pred             EecCCCCCcceecCCeEEEecCCCCeEEEEecccchhccCCcccCccccccCCCCCccceeEeeecCCCCc-eeecCccc
Q 018221          239 LQINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDG-ELGPATSL  317 (359)
Q Consensus       239 ~q~~~~~GLqV~~~g~W~~V~p~pg~~vVniGD~l~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~pl~~~  317 (359)
                      +| |+++||||+++|+|++|+|+||+|||||||+||+||||+|||++|||+++++++|||++||++|+.|+ +|+|+++|
T Consensus       242 ~q-d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~  320 (356)
T 1gp6_A          242 LH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEM  320 (356)
T ss_dssp             EE-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGG
T ss_pred             EE-cCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhh
Confidence            99 67999999999999999999999999999999999999999999999999889999999999999999 99999999


Q ss_pred             cCCCCCCCCCcccHHHHHHHHHhccCCCCcc
Q 018221          318 IAPKTPALFKRISVVDHLKIFFSSELRGKSF  348 (359)
Q Consensus       318 v~~~~p~~y~~~~~~ey~~~~~~~~~~g~~~  348 (359)
                      +++++|++|+++|++||++.+++++++|+..
T Consensus       321 ~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          321 VSVESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             CCSSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            9999999999999999999999888776543
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 359
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-67
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-62
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 3e-57
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 8e-42
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  214 bits (546), Expect = 1e-67
 Identities = 105/338 (31%), Positives = 176/338 (52%), Gaps = 20/338 (5%)

Query: 25  PLTTVPPRFVRLEIDHPLIRN-----DDTSTQQLPVIDMHRLLSGDDSE----LEKLDNT 75
            + ++P  ++R + +   I +           Q+P ID+  + S D+      +E+L   
Sbjct: 13  GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKA 72

Query: 76  CKEWGFFQLINHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQP--GDSEGFGQHFIASE 133
             +WG   LINHG+ + L+E+VK   ++FF+L ++EK+K+      G  +G+G     + 
Sbjct: 73  SLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNA 132

Query: 134 EQKLDWGYGFTMVTLPTHLRKPHLFPKLPLPFRDDLEVYSTEIKNLTLKILDQMAKALRM 193
             +L+W   F  +  P   R   ++PK P  + +    Y+  ++ L  K+   ++  L +
Sbjct: 133 SGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL 192

Query: 194 DPNDMEELF---ENGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLLQINEMDGLQIK 250
           +P+ +E+     E  +   ++NYYP C QPE  +G  +H D SALT  +  N + GLQ+ 
Sbjct: 193 EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT-FILHNMVPGLQLF 251

Query: 251 KDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGE 310
            +GKWV  K +PD+ V++IGD LEIL+NG Y SI HR  VN  K R+S A F  P  D  
Sbjct: 252 YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKI 311

Query: 311 -LGPATSLIAPKTPALFKRISVVDHLKIFFSSELRGKS 347
            L P   +++ ++PA F   +   H++     +L GK 
Sbjct: 312 VLKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKE 345
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.23
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 88.81
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.4e-81  Score=600.26  Aligned_cols=326  Identities=32%  Similarity=0.610  Sum_probs=289.9

Q ss_pred             cccHHHHHhcCCCCCCCCCccCCCCCCCCCCC-----CCCCCCCcceEeCCCCCCCCHH----HHHHHHHHHhhcCeEEE
Q 018221           14 EPSILDLANNQPLTTVPPRFVRLEIDHPLIRN-----DDTSTQQLPVIDMHRLLSGDDS----ELEKLDNTCKEWGFFQL   84 (359)
Q Consensus        14 ~~~v~~l~~~~~~~~~p~~yv~~~~~~~~~~~-----~~~~~~~iPvIDls~l~~~~~~----~~~~l~~A~~~~GfF~v   84 (359)
                      +..||+|+++ |+++||++||+|++++|.+..     ......+||||||+.|.+++.+    .+++|.+||++||||||
T Consensus         3 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l   81 (349)
T d1gp6a_           3 VERVESLAKS-GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHL   81 (349)
T ss_dssp             CCCHHHHHHT-TCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             CcchHHHHhC-CCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEE
Confidence            4579999999 999999999999999887532     1234568999999999877763    56899999999999999


Q ss_pred             EeCCCCHHHHHHHHHHHhhhhCCCHHHHhhccCCC--CCccccccCCCCCcccccCcccccccccCCCCCCCCCCCCCCC
Q 018221           85 INHGVSSSLVEKVKAEIQDFFNLPIDEKKKFWQQP--GDSEGFGQHFIASEEQKLDWGYGFTMVTLPTHLRKPHLFPKLP  162 (359)
Q Consensus        85 ~nhGv~~~l~~~~~~~~~~fF~lP~eeK~~~~~~~--~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~  162 (359)
                      +||||+.++++++++++++||+||.|+|++|....  +.+.||+...........+|.+.+.....+......|.||..+
T Consensus        82 ~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~  161 (349)
T d1gp6a_          82 INHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP  161 (349)
T ss_dssp             ESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSS
T ss_pred             EccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhccccccccccccccccccc
Confidence            99999999999999999999999999999997643  3456666555555566677877665555555566789999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHCCCChhhHHHHhh---ccceeeeeeccCCCCCCCCccccccccCCCceeEEE
Q 018221          163 LPFRDDLEVYSTEIKNLTLKILDQMAKALRMDPNDMEELFE---NGMQAFRMNYYPPCLQPEKVVGHNSHCDASALTVLL  239 (359)
Q Consensus       163 ~~fr~~~~~y~~~~~~la~~ll~~l~~~Lgl~~~~~~~~~~---~~~~~lrl~~YPp~~~~~~~~g~~~HtD~~~lTlL~  239 (359)
                      +.|++.+++|+++|.+|+.+|+++++++||+++++|.+.+.   ...+.+|++|||||+.+...+|+++|||+|+||||+
T Consensus       162 ~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~  241 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL  241 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEe
Confidence            99999999999999999999999999999999999988774   346789999999999999999999999999999999


Q ss_pred             ecCCCCCcceecCCeEEEecCCCCeEEEEecccchhccCCcccCccccccCCCCCccceeEeeecCCCCcee-ecCcccc
Q 018221          240 QINEMDGLQIKKDGKWVAVKPLPDAFVVNIGDVLEILTNGTYPSIEHRATVNSVKERLSLATFYSPKLDGEL-GPATSLI  318 (359)
Q Consensus       240 q~~~~~GLqV~~~g~W~~V~p~pg~~vVniGD~l~~~SnG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~pl~~~v  318 (359)
                      | +.++||||+++|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++|||++||++|+.|++| +|+++|+
T Consensus       242 q-~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v  320 (349)
T d1gp6a_         242 H-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  320 (349)
T ss_dssp             E-CSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             c-cCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHc
Confidence            9 7899999999999999999999999999999999999999999999999999999999999999999865 8999999


Q ss_pred             CCCCCCCCCcccHHHHHHHHHhc
Q 018221          319 APKTPALFKRISVVDHLKIFFSS  341 (359)
Q Consensus       319 ~~~~p~~y~~~~~~ey~~~~~~~  341 (359)
                      ++++|++|+++|++||++.++..
T Consensus       321 ~~~~p~~y~~~t~~e~~~~rl~~  343 (349)
T d1gp6a_         321 SVESPAKFPPRTFAQHIEHKLFG  343 (349)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHHHHHhc
Confidence            99999999999999999987743
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure