Citrus Sinensis ID: 018223

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESHVTEQKANGNSARDGPSNSAKAGQEDEVVPDDDDELDMDELNELEASLAKTSIQIQDPSNGS
cccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEcccccccc
cccccccHHHHHHHcHEHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccEEEHHHHccccccccccccccccccHHHHHHcHcHEcccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEEccccccccEEEccccccEEEccHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHEcccHHHcccccccccccHHHccccccccccccccccccccccccccccccccccccccEEEEEHcccEEEEccccccc
MPPKQQSKAELAKKQKIVEDktfglknknksKNVQKYVQNLKqnvqpkpdqsKVAAKKKKEEEKAKEKELNDLFKIAvsqpkvpvgvdpksILCEFykagqcqkgfkckfshdlnvqrkgekidiysdkrdketmeDWDQETLEKVVESKNkeyqqnkptdIVCKYFLEAVEKKQYgwfwvcpnggkdchyrhalppgyvLKSQMKALLEEEAEKITIEEEIENQRakittttpmtpelFTEWKKKKIAERDAGLAAERAERAkndrmsgrelflsdsswfvddaeaYDKYQREEESHVTEqkangnsardgpsnsakagqedevvpddddeldMDELNELEASLAKTsiqiqdpsngs
mppkqqskaelakkqkivedktfglknknksknVQKYVQnlkqnvqpkpdqskvaakkkkeeekakekelndlfkiavsqpkvpvgVDPKSILCEFYKAGQCQKGFkckfshdlnvqrkgekidiysdkrdketmedWDQETLEKVVEsknkeyqqnkptdiVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKitieeeienqrakittttpmtpelftewkkKKIAERDAGLAAERaerakndrmsgrelflsdsswfvDDAEAYDKYQREEESHvteqkangnsardgpsnsakagqedevvpdDDDELDMDELNELEaslaktsiqiqdpsngs
MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVaakkkkeeekakekeLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMkalleeeaekitieeeieNQRAKIttttpmtpELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESHVTEQKANGNSARDGPSNSAKAGQedevvpddddeldmdelneleASLAKTSIQIQDPSNGS
************************************************************************LFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDI**********************************TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALL******************************FT********************************FL**SSWFVDD***************************************************************************
*****************************************************************************************KSILCEFYKAGQCQKGFKC****************IYS*KRD*******************************VCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYV**************************A**TTTTPMTPELFTEW****************************ELFLSDSSWFVDDAEAYDKYQREEESHV*****************************DDDELDMDELNELEASLAKT***********
*************KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQN***********************KELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDK****************************************DELDMDELNELEASLAKTSI*********
*****QS******KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKP*QSKVAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGE**D*YSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTTTPMTPELFTEWKKKKIAERDAGLAAERA**********RE****DSSWFVDDAEAYD**********************************EVVPDDDDELDMDELNELEASLAKTSIQIQD*****
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MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSxxxxxxxxxxxxxxxxxxxxxFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKAxxxxxxxxxxxxxxxxxxxxxITTTTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESHVTEQKANGNSARDGPSNSAKAGQEDEVVPDDDDELDMDELNELEASLAKTSIQIQDPSNGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query359 2.2.26 [Sep-21-2011]
Q0JHZ2366 Zinc finger CCCH domain-c no no 0.997 0.978 0.783 1e-150
Q9SK74371 Zinc finger CCCH domain-c yes no 0.994 0.962 0.762 1e-135
Q54DA5373 Zinc finger CCCH domain-c yes no 0.793 0.764 0.496 6e-60
Q12000345 Translation machinery-ass yes no 0.818 0.852 0.433 2e-59
Q93618374 Zinc finger CCCH domain-c yes no 0.802 0.770 0.462 1e-56
Q6DD06426 Zinc finger CCCH domain-c N/A no 0.771 0.650 0.446 1e-55
A4IGY3426 Zinc finger CCCH domain-c yes no 0.696 0.586 0.483 4e-55
A8WMM4374 Zinc finger CCCH domain-c N/A no 0.802 0.770 0.461 4e-55
Q6U6G5426 Zinc finger CCCH domain-c yes no 0.771 0.650 0.468 4e-55
Q3TIV5426 Zinc finger CCCH domain-c yes no 0.771 0.650 0.468 5e-55
>sp|Q0JHZ2|C3H11_ORYSJ Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2 Back     alignment and function desciption
 Score =  530 bits (1365), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/365 (78%), Positives = 321/365 (87%), Gaps = 7/365 (1%)

Query: 1   MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKK 58
           MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K AAKK
Sbjct: 1   MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKK 60

Query: 59  KKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQR 118
           KKEEEKA+EKELNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQR
Sbjct: 61  KKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQR 120

Query: 119 KGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGW 178
           KGEKIDIY+DKRD ETMEDWDQETLEKVV SK  EYQQNKPTDIVCKYFL+AVEKKQYGW
Sbjct: 121 KGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGW 180

Query: 179 FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTTTPMTPE 238
           FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE+EKI IE+EIE+QR K+ TTTPMT +
Sbjct: 181 FWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESEKIAIEDEIEDQRKKVKTTTPMTTD 240

Query: 239 LFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESH 298
           LF EWK+KK  ER+AGLAA RAERAKNDRMSGRELF++DSS FVDDAEAYD Y+R+EES 
Sbjct: 241 LFMEWKRKKAEEREAGLAALRAERAKNDRMSGRELFMADSSVFVDDAEAYDVYERQEESE 300

Query: 299 VTEQKANGNSARDGPSNSAKAGQEDE----VVPDDDDELDMDELNELEASLAKTSIQIQD 354
             E+ +N N   +GPS+S   G+E E       + DD+LD+DELNELEASL++TSIQI++
Sbjct: 301 ANEEPSNKNQ-DEGPSSSTSNGKEVEESDDEDINIDDDLDIDELNELEASLSRTSIQIRE 359

Query: 355 PSNGS 359
           P  G+
Sbjct: 360 PGEGT 364

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SK74|C3H21_ARATH Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=4 SV=1 Back     alignment and function description
>sp|Q54DA5|ZC3HF_DICDI Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1 Back     alignment and function description
>sp|Q12000|TMA46_YEAST Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMA46 PE=1 SV=2 Back     alignment and function description
>sp|Q93618|ZC3HF_CAEEL Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3 Back     alignment and function description
>sp|Q6DD06|ZC3HF_XENLA Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1 Back     alignment and function description
>sp|A4IGY3|ZC3HF_XENTR Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1 Back     alignment and function description
>sp|A8WMM4|ZC3HF_CAEBR Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=2 Back     alignment and function description
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1 Back     alignment and function description
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
255568442363 zinc finger protein, putative [Ricinus c 0.980 0.969 0.841 1e-159
224069316359 predicted protein [Populus trichocarpa] 0.994 0.994 0.862 1e-150
224100879363 predicted protein [Populus trichocarpa] 0.983 0.972 0.818 1e-148
297597912366 Os01g0834700 [Oryza sativa Japonica Grou 0.997 0.978 0.783 1e-148
427199369367 zinc finger ccch domain-containing prote 0.991 0.970 0.798 1e-147
356548206361 PREDICTED: zinc finger CCCH domain-conta 0.986 0.980 0.842 1e-147
356503692356 PREDICTED: zinc finger CCCH domain-conta 0.972 0.980 0.845 1e-146
356537459362 PREDICTED: zinc finger CCCH domain-conta 0.986 0.977 0.840 1e-143
357125750368 PREDICTED: zinc finger CCCH domain-conta 0.994 0.970 0.752 1e-143
449451709362 PREDICTED: zinc finger CCCH domain-conta 0.988 0.980 0.813 1e-142
>gi|255568442|ref|XP_002525195.1| zinc finger protein, putative [Ricinus communis] gi|223535492|gb|EEF37161.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 308/366 (84%), Positives = 330/366 (90%), Gaps = 14/366 (3%)

Query: 1   MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKKKK 60
           MPPKQQSKA++AKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQ+VQPKPD SK AAKKKK
Sbjct: 1   MPPKQQSKADIAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDSSKTAAKKKK 60

Query: 61  EEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKG 120
           EEEKAKEKELNDLFK+AVSQPKVP+GVDPKSILCEF+KAGQC KGFKCKFSHDLNVQRKG
Sbjct: 61  EEEKAKEKELNDLFKVAVSQPKVPIGVDPKSILCEFFKAGQCAKGFKCKFSHDLNVQRKG 120

Query: 121 EKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFW 180
           EKIDIYSDKRD+ETMEDWDQETLEKVVESK  EY QNKPTDIVCKYFLEAVEKKQYGWFW
Sbjct: 121 EKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFW 180

Query: 181 VCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITTTTPMTPELF 240
           VCPNGGKDCHYRHALPPGYVLKSQMKALLEEEA+KI IEEEIENQRAK+T +TPMTPELF
Sbjct: 181 VCPNGGKDCHYRHALPPGYVLKSQMKALLEEEADKIPIEEEIENQRAKLTASTPMTPELF 240

Query: 241 TEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESHVT 300
            +WK KKI ERDAGLAA+RAERAKNDRMSGRELFLSD+S FVDDAEAY++YQREE+S   
Sbjct: 241 MQWKNKKIEERDAGLAAQRAERAKNDRMSGRELFLSDASLFVDDAEAYEEYQREEQSDGP 300

Query: 301 EQKANGNSARDGPSNSAKAGQEDEVVPDDD---------DELDMDELNELEASLAKTSIQ 351
           EQKAN +S+ DGPS SA +     VV D+D         DELD+DELNELEASLAKTSIQ
Sbjct: 301 EQKANVSSSTDGPSTSAAS-----VVDDEDPHGGEEDDDDELDLDELNELEASLAKTSIQ 355

Query: 352 IQDPSN 357
           IQ+P  
Sbjct: 356 IQEPGG 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069316|ref|XP_002326328.1| predicted protein [Populus trichocarpa] gi|222833521|gb|EEE71998.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224100879|ref|XP_002312050.1| predicted protein [Populus trichocarpa] gi|222851870|gb|EEE89417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297597912|ref|NP_001044722.2| Os01g0834700 [Oryza sativa Japonica Group] gi|205688775|sp|Q0JHZ2.2|C3H11_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 11; Short=OsC3H11 gi|56201934|dbj|BAD73384.1| putative uncharacterized hypothalamus protein HT010 [Oryza sativa Japonica Group] gi|56202330|dbj|BAD73789.1| putative uncharacterized hypothalamus protein HT010 [Oryza sativa Japonica Group] gi|215741052|dbj|BAG97547.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673848|dbj|BAF06636.2| Os01g0834700 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|427199369|gb|AFY26895.1| zinc finger ccch domain-containing protein 11 [Morella rubra] Back     alignment and taxonomy information
>gi|356548206|ref|XP_003542494.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Glycine max] Back     alignment and taxonomy information
>gi|356503692|ref|XP_003520639.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Glycine max] Back     alignment and taxonomy information
>gi|356537459|ref|XP_003537244.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Glycine max] Back     alignment and taxonomy information
>gi|357125750|ref|XP_003564553.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|449451709|ref|XP_004143604.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Cucumis sativus] gi|449507579|ref|XP_004163072.1| PREDICTED: zinc finger CCCH domain-containing protein 11-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query359
TAIR|locus:2039022371 AT2G20280 [Arabidopsis thalian 1.0 0.967 0.637 2e-120
DICTYBASE|DDB_G0292410373 DDB_G0292410 "CCCH-type zinc f 0.852 0.820 0.420 1.7e-59
FB|FBgn0033317404 CG8635 [Drosophila melanogaste 0.796 0.707 0.438 3.3e-56
UNIPROTKB|Q1RMM1426 ZC3H15 "Zinc finger CCCH domai 0.863 0.727 0.406 3.3e-56
UNIPROTKB|Q8WU90426 ZC3H15 "Zinc finger CCCH domai 0.863 0.727 0.403 1.1e-55
UNIPROTKB|F1RYJ5426 ZC3H15 "Uncharacterized protei 0.827 0.697 0.412 1.8e-55
MGI|MGI:1919747426 Zc3h15 "zinc finger CCCH-type 0.855 0.720 0.401 2.3e-55
RGD|1359234426 Zc3h15 "zinc finger CCCH-type 0.855 0.720 0.401 2.3e-55
WB|WBGene00009189374 F27D4.4 [Caenorhabditis elegan 0.830 0.796 0.415 2.3e-55
UNIPROTKB|Q5H7N8429 ZC3H15 "Zinc finger CCCH domai 0.857 0.717 0.396 6.1e-55
TAIR|locus:2039022 AT2G20280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1185 (422.2 bits), Expect = 2.0e-120, P = 2.0e-120
 Identities = 236/370 (63%), Positives = 268/370 (72%)

Query:     1 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXX 60
             MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K       
Sbjct:     1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKK 60

Query:    61 XXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKG 120
                      LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKG
Sbjct:    61 EEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKG 120

Query:   121 EKIDIYSDKRDKE-TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWF 179
             EKIDIYSD RD++  M++WDQETLEKVVESK  EY QNKPTDIVCKYFL+AVEKKQYGWF
Sbjct:   121 EKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWF 180

Query:   180 WVCPNGGKDCHYRHALPPGYVLKSQMXXXXXXXXXXXXXXXXXX-NQRAKIXXXXXXXXE 238
             W CPNGGK+CHYRHALPPGYVLKSQM                   N+RAK+         
Sbjct:   181 WSCPNGGKECHYRHALPPGYVLKSQMKALLEEESSKKLAVEDEIENERAKLQTATQMTPA 240

Query:   239 LFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESH 298
             LF EWK+KKIAERDAGLAA +AERAKNDRMSGRELFLS++S FVDDAEA ++Y+RE E  
Sbjct:   241 LFMEWKRKKIAERDAGLAASQAERAKNDRMSGRELFLSNASLFVDDAEACEEYEREREQE 300

Query:   299 VTEQKANGNSARDGPSNSA--------KAGQXXXXXXXXXXXXXXXXXXXXXASLAKTSI 350
              TEQKA    A  G S S+        +  +                     ASL+KTSI
Sbjct:   301 ETEQKAKNKEAEAGTSKSSGDAEQSSKEVNEEEEDDDDDDDDLDMDELDELEASLSKTSI 360

Query:   351 QIQDPSN-GS 359
             QI++P++ GS
Sbjct:   361 QIREPNDEGS 370
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
DICTYBASE|DDB_G0292410 DDB_G0292410 "CCCH-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0033317 CG8635 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMM1 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WU90 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYJ5 ZC3H15 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919747 Zc3h15 "zinc finger CCCH-type containing 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359234 Zc3h15 "zinc finger CCCH-type containing 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00009189 F27D4.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q5H7N8 ZC3H15 "Zinc finger CCCH domain-containing protein 15" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q12000TMA46_YEASTNo assigned EC number0.43310.81890.8521yesno
Q9SK74C3H21_ARATHNo assigned EC number0.76290.99440.9622yesno
Q0JHZ2C3H11_ORYSJNo assigned EC number0.78350.99720.9781nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_280105
hypothetical protein (359 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
COG5252299 COG5252, COG5252, Uncharacterized conserved protei 2e-45
smart0035627 smart00356, ZnF_C3H1, zinc finger 1e-05
pfam0064227 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t 0.004
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information 
 Score =  157 bits (398), Expect = 2e-45
 Identities = 102/317 (32%), Positives = 149/317 (47%), Gaps = 34/317 (10%)

Query: 1   MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVAAKKKK 60
              +   KA    ++++ EDKTFGLKNKN+S  VQ  ++ ++     +  + K   +K +
Sbjct: 9   KQQESGKKATRDMRKEL-EDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKK---EKMR 64

Query: 61  EEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKG 120
            EEK +E E          +  +  GVDPK+++C  +    C KG  CKF+H     RK 
Sbjct: 65  MEEKRREPE----------KQVIRAGVDPKTVVCALFLNKTCAKGDACKFAHGKEEARKT 114

Query: 121 EKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFW 180
           EK D+YSD RDKE      +                   TD VCK+F+EA+E  +YGW W
Sbjct: 115 EKPDLYSDVRDKEEDVPLGKRP--------------WINTDRVCKFFIEAMESGKYGWGW 160

Query: 181 VCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKI-TTTTPMTPEL 239
            CPNG   C Y H LP GYVL             +I++EE IE +R  +    TP+T E 
Sbjct: 161 TCPNGNMRCSYIHKLPDGYVLSRDKIKD--STQVEISLEEFIELERQSLPEKLTPLTEEN 218

Query: 240 FTEWKKK---KIAERDAGLAAERAERAKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEE 296
           F EWK     +I ++     + R  + +     G ELF +    F DD EA +++   E 
Sbjct: 219 FKEWKDGRRLRILKQKEEKESARKVKGRATGTKGVELFETRRDLFKDDVEAGEEWDYTER 278

Query: 297 SHVTEQKANGNSARDGP 313
            +   +   G+     P
Sbjct: 279 CYSESEDEEGHDKATAP 295

Length = 299
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 359
KOG1763343 consensus Uncharacterized conserved protein, conta 100.0
COG5252299 Uncharacterized conserved protein, contains CCCH-t 100.0
KOG4018215 consensus Uncharacterized conserved protein, conta 99.21
KOG1040325 consensus Polyadenylation factor I complex, subuni 98.0
smart0035627 ZnF_C3H1 zinc finger. 97.97
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.96
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 97.19
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 96.45
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 96.34
KOG4791 667 consensus Uncharacterized conserved protein [Funct 96.03
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 95.83
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.52
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 95.42
smart0035627 ZnF_C3H1 zinc finger. 94.3
KOG2185486 consensus Predicted RNA-processing protein, contai 93.85
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 93.15
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 92.85
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 92.56
PF0139639 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc 91.01
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 89.69
KOG4791 667 consensus Uncharacterized conserved protein [Funct 86.35
KOG2185 486 consensus Predicted RNA-processing protein, contai 83.83
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 80.22
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-113  Score=819.91  Aligned_cols=328  Identities=53%  Similarity=0.866  Sum_probs=282.1

Q ss_pred             CCCCc---cchHHHHhhhhhhccccccccccCccHHHHHHHHHHHhhcCCCCch--HHHHHHHhHHHHHHHHHHHHhhhh
Q 018223            1 MPPKQ---QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQ--SKVAAKKKKEEEKAKEKELNDLFK   75 (359)
Q Consensus         1 MPPk~---~~K~~~k~k~KiieDKTFGLKNKnkskkvQk~I~~v~~qv~~~~~~--~~~~~kkkke~~k~~~~el~~Lfk   75 (359)
                      ||||+   |+|+.++.++|+||||||||||||+|++||+||+||++||++++.+  .+.++.+++.++++  .||+.||+
T Consensus         1 MPPKk~g~skka~~k~k~K~ieDKTFGLKNKk~sk~vQK~I~qv~~qvq~~~~~d~~k~~e~kkk~e~~~--~e~~~lfk   78 (343)
T KOG1763|consen    1 MPPKKQGPSKKADQKDKEKVIEDKTFGLKNKKGSKKVQKFIKQVEQQVQQNPRKDAKKRAEEKKKKEEKQ--RELNELFK   78 (343)
T ss_pred             CCCccCCCCcchhhhhhhHhhhhhhcccccccccHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHH--HHHHHhcc
Confidence            99986   5999999999999999999999999999999999999999976632  22333333333333  39999999


Q ss_pred             hhhhCCCCCCCCCCcchhhhhhhcccccCCCCCccCccccccccchhhhcccccccchhhccchHHHHHHHHHhhccccc
Q 018223           76 IAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQ  155 (359)
Q Consensus        76 ~~~~~~kv~~g~dpKsv~C~fFk~G~C~kG~kCkfSHd~~~~rk~eK~dlY~D~R~~dtmd~Wd~~kL~~Vv~~kh~~~~  155 (359)
                      |  .+|+||+|||||||+|+||++|+|+||++|+||||+++.|+++||+||.|.|++  |  ||+++|++||++|||  +
T Consensus        79 p--~~qkv~~gvDPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rde--m--WD~~kl~~vv~~K~~--k  150 (343)
T KOG1763|consen   79 P--ADQKVPKGVDPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDE--M--WDEEKLEEVVLKKHG--K  150 (343)
T ss_pred             c--cccccccCCCchHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhh--h--hhHHHHHHHHHhhcc--C
Confidence            9  578999999999999999999999999999999999999999999999999998  7  999999999999999  4


Q ss_pred             CCCCchhhhhHHHHHHHhcccCcccccCCCCCCccccccCCCccccchhHHHHHHHHHhhhcHHHHHHHHHhcCCC-CCC
Q 018223          156 QNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAEKITIEEEIENQRAKITT-TTP  234 (359)
Q Consensus       156 ~~~~t~ivCK~Fl~AvE~~kYGWfW~CPnGgd~C~yrH~LPpG~VlK~~~k~~~e~~~~eisLEE~iE~ER~kL~~-gTP  234 (359)
                      +..+|+|||||||+|||+|+|||||.|||||+.|+||||||+||||+++++++  +...+||||++||.||++|++ +||
T Consensus       151 ~k~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVLk~dkkk~--ek~~eISlEe~IE~ER~~L~~nlT~  228 (343)
T KOG1763|consen  151 PKPTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGYVLKRDKKKL--EKQDEISLEELIEKERAALGPNLTP  228 (343)
T ss_pred             CCCchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcchhhhhhhhhh--cccccccHHHHHHHHHHhcCCCCcc
Confidence            56679999999999999999999999999999999999999999999888873  478899999999999999998 999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCccceeeccCCCCccCchHHHhhhhhhhchhhhhhhhcCCcCCCC
Q 018223          235 MTPELFTEWKKKKIAERDAGLAAERAER--AKNDRMSGRELFLSDSSWFVDDAEAYDKYQREEESHVTEQKANGNSARDG  312 (359)
Q Consensus       235 VT~EsFl~WKkkk~~Ek~~~~~k~kee~--a~k~~LSGRELFe~dp~Lf~DDdeA~d~y~re~~~d~~ed~~~~~evdeS  312 (359)
                      ||+|||++||.++++++.+.+++.++.+  .|+.-||||+||+++++||.||++.+..|+++...++.++.+.+.++|.+
T Consensus       229 ~T~e~F~~WKk~k~~er~~k~~~~~~~~k~~gk~~~sGRElF~~~~dl~~dd~~e~~d~e~~~~~ee~d~~~k~~e~d~~  308 (343)
T KOG1763|consen  229 LTEETFKAWKKRKIRERKEKLAAEKAERKKVGKSNMSGRELFESNADLVNDDDEEAGDLEYTEYSEETDEEAKVKEADAP  308 (343)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHhhhhccCCCchHHHHhhchhhccCchhhccchhhhhhccchhhhhhhhhcccc
Confidence            9999999999999999987777665444  23433999999999999999997766666666666778888999999999


Q ss_pred             CCCCccCCC----CCCCCCCCCCccchhhhhH
Q 018223          313 PSNSAKAGQ----EDEVVPDDDDELDMDELNE  340 (359)
Q Consensus       313 lf~~~~~~~----~d~~~~ddddd~d~del~e  340 (359)
                      .|-+...|.    ...+..|+.+..|++++|+
T Consensus       309 ~~d~~~~dq~s~~~~ed~~~~~~~~di~e~~~  340 (343)
T KOG1763|consen  309 IFDGSGADQQSKGAIEDYGDGNDTFDINEDNE  340 (343)
T ss_pred             cccccCccccchhhhhhccCCCcccCcchhhh
Confidence            993222222    1224555677888888877

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query359
2rhk_C72 Cleavage and polyadenylation specificity factor su 4e-07
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 2e-04
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 3e-04
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 53/108 (49%)

Query: 90  KSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVES 149
           K+++C+ +  G C+KG +C+F H+ ++ +                               
Sbjct: 15  KTVVCKHWLRGLCKKGDQCEFLHEYDMTKM------------------------------ 44

Query: 150 KNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPP 197
                         C ++       ++G    C N  K+C + H  P 
Sbjct: 45  ------------SECYFYS------KFG---ECSN--KECPFLHIDPE 69
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
4a9a_C142 Translation machinery-associated protein 46; DRG-D 99.66
2rhk_C72 Cleavage and polyadenylation specificity factor su 99.51
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 99.49
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 99.21
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 98.95
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 98.9
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 98.85
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 98.55
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 98.4
3u9g_A229 Zinc finger CCCH-type antiviral protein 1; zinc fi 96.84
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 96.15
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 95.86
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.49
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 94.84
2rhk_C72 Cleavage and polyadenylation specificity factor su 94.65
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 94.44
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 94.25
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 93.56
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 92.91
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 92.35
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 90.08
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 88.85
2fc6_A50 Nuclear, target of EGR1, member 1; structure genom 88.53
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 87.89
1lup_A31 GSMTX2; inhibitor cysteine knot, beta-sheet, toxin 84.67
2d9m_A69 Zinc finger CCCH-type domain containing protein 7A 82.56
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.66  E-value=2.2e-17  Score=144.23  Aligned_cols=63  Identities=33%  Similarity=0.515  Sum_probs=52.3

Q ss_pred             HHHhhhcHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccceeeccC
Q 018223          211 EEAEKITIEEEIENQRAKITT--TTPMTPELFTEWKKKKIAERDAGLAAERAERAKNDRMSGRELFLSD  277 (359)
Q Consensus       211 ~~~~eisLEE~iE~ER~kL~~--gTPVT~EsFl~WKkkk~~Ek~~~~~k~kee~a~k~~LSGRELFe~d  277 (359)
                      +..++||||||||.||++|+.  +||||+|||++||++++.++.+..++.+    .+.++|||+||..+
T Consensus        12 e~~~~ItlEe~iE~ER~kL~~~nlTpVT~EtF~~WKk~k~~ek~~~~~~~~----~kk~~tGRei~~~g   76 (142)
T 4a9a_C           12 EKQPKITLEEFIETERGKLDKSKLTPITIANFAQWKKDHVIAKINAEKKLS----SKRKPTGREIILKM   76 (142)
T ss_dssp             CSCCCCCHHHHHHTTGGGSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHH----TTSCCCHHHHHHHH
T ss_pred             hcCCcCcHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHhc
Confidence            447899999999999999954  8999999999999999998865543322    34678999999974
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A Back     alignment and structure
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query359
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 97.13
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.1
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 96.88
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.68
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.46
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 94.36
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 93.3
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 93.16
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 92.26
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 91.96
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 90.19
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=5.5e-05  Score=54.91  Aligned_cols=25  Identities=36%  Similarity=0.796  Sum_probs=21.6

Q ss_pred             hhhhhhhcc-cccCCCCCccCccccc
Q 018223           92 ILCEFYKAG-QCQKGFKCKFSHDLNV  116 (359)
Q Consensus        92 v~C~fFk~G-~C~kG~kCkfSHd~~~  116 (359)
                      .+|.||--| .|-.|++|+|||++-.
T Consensus         1 FPCK~yHtg~kCy~gd~C~FSH~pLt   26 (56)
T d2cqea1           1 FPCKLYHTTGNCINGDDCMFSHDPLT   26 (56)
T ss_dssp             SBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCcceeecCCcccCCCcccccCCccC
Confidence            479999977 9999999999998643
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure