Citrus Sinensis ID: 018242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Secondary Structure (PSIPRED)
cccccccccccEEEcccccccccccEEEccccccccccEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEcccccEEEEEEEEccccccccccEEEEEccccEEEEEccccccccccEEEEEEEcccccEEEEEccccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEEccccccccEEEEEEcccccccEEEcccccEEEEEcccccccHHHcccccHHHHHHHccccHHHHHHccccccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHccccccccccEEEcccccccEEEccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccEEEccccccEEEEEccccEEEEcccccEEEEEEEccccccEEEccccEEcccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccHHHEEEEEEcccccccEEEHHccccccccccccccccEEEEEccccccHHHHHcccHHHHHHHHHccccccccHHHHcccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEEcccEEEEEEccc
Coil and Loop (DISEMBL)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEgaigpeslafdalgegpytgvsdgriiKWHQDQRRWLHfartspnrdgcegayeydhaakehicgrplglcfnktngdlYIADAYFGllkvgpegglATAVAtqsegipfrfcnsldidqstgiiyftdsssqfqrrnHISVIlsgdktgrlmkydpatKQVTVLLGnlsfpngvalsedgnYILLAETTSCRILRYWLKTSKAGTIEIVAqlpgfpdnikrsprggfwvgihSRRKGISKLVLSFpwignvliklPIDIVKIHSSLVKlsgnggmamrisEQGNVLEILEEIGRKMWRSISEVEekdgnlwigsvnmpyaglynyss
Flexible Loop (DISEMBL)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHfartspnrdgCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFtdsssqfqrrnHISVIlsgdktgrlMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVaqlpgfpdnikrsPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVeekdgnlwigsvnmpyaglynyss
Low Complexity Region (SEG)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Disordered region (IsUnstruct)
*****SFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYN***
Disordered Region (DISOPRED)
********AKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS*
Disordered Region (DISEMBL)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Disordered Region (DISPRO)
*****SFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	359	2.2.26 [Sep-21-2011]
P94111	335	Strictosidine synthase 1	no	no	0.791	0.847	0.386	7e-52
P68175	344	Strictosidine synthase OS	N/A	no	0.771	0.805	0.354	1e-50
P68174	342	Strictosidine synthase (F	N/A	no	0.771	0.809	0.354	1e-50
P92976	329	Strictosidine synthase 3	no	no	0.791	0.863	0.368	3e-49
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.838	0.723	0.371	6e-48
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.835	0.721	0.361	4e-47
Q803F5	415	Adipocyte plasma membrane	yes	no	0.844	0.730	0.358	2e-46
P18417	352	Strictosidine synthase OS	N/A	no	0.704	0.718	0.372	5e-46
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.830	0.723	0.344	1e-43
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.827	0.789	0.342	3e-43

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score =  204 bits (520), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 182/323 (56%), Gaps = 39/323 (12%)

Query: 35  GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPNRDGCEGAYEYDHAAKE 92
           GPE+ AFD+ G+G YTGVS G+I+K+   +  ++ FA+   S N   C+G      A + 
Sbjct: 38  GPEAFAFDSTGKGFYTGVSGGKILKYLP-ETGYVDFAQITESSNSSWCDGTIGTALAGR- 95

Query: 93  HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS 152
             CGRP G+ FN+  GDLY+ADA  GL  + P GGLAT +    +G PF+F + LD+D +
Sbjct: 96  --CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPT 153

Query: 153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDG 212
           TG++YFT  SS+F     +  +   D TG+L KYDP+TK VTVL+  LS   G A+S DG
Sbjct: 154 TGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDG 213

Query: 213 NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWVGIHSRRKGIS 271
           +++L+++ T   I RYW+K  KAG+ E        PDNIKR    G FWV          
Sbjct: 214 SFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWV---------- 263

Query: 272 KLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRS 331
                     +V+ K+   IV  + S VK++ NG       E    + + ++ G  +   
Sbjct: 264 ---------ASVVNKI---IVPTNPSAVKVNSNG-------EVLQTIPLKDKFGDTL--- 301

Query: 332 ISEVEEKDGNLWIGSVNMPYAGL 354
           +SEV E +GNL+IG++  P+AG+
Sbjct: 302 LSEVNEFEGNLYIGTLTGPFAGI 324

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 45/322 (13%)

Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
           +  P S  FD+  +G YT V DGR+IK+      ++ FA  SP  N+  CE + +   A 
Sbjct: 40  SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 96

Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
           K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +D
Sbjct: 97  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 156

Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q TGI+YFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL  L  P G  +S 
Sbjct: 157 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 216

Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
           D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  G FWV         
Sbjct: 217 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 266

Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
                                    SS  +L GN         ++  E GN+LE++    
Sbjct: 267 -------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 301

Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
                   +++E DG L+IG++
Sbjct: 302 PFAGEHFEQIQEHDGLLYIGTL 323

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 45/322 (13%)

Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
           +  P S  FD+  +G YT V DGR+IK+      ++ FA  SP  N+  CE + +   A 
Sbjct: 38  SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 94

Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
           K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +D
Sbjct: 95  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 154

Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q TGI+YFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL  L  P G  +S 
Sbjct: 155 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 214

Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
           D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  G FWV         
Sbjct: 215 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 264

Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
                                    SS  +L GN         ++  E GN+LE++    
Sbjct: 265 -------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 299

Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
                   +++E DG L+IG++
Sbjct: 300 PFAGEHFEQIQEHDGLLYIGTL 321

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 170/323 (52%), Gaps = 39/323 (12%)

Query: 35  GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR--TSPNRDGCEGAYEYDHAAKE 92
           GPE+ AFD+ G+G YTGV+ G+I+K+   ++ ++ FA+   S     C+GA    +  K 
Sbjct: 40  GPEAFAFDSTGKGFYTGVTGGKILKYLP-KKGYVDFAQITNSSKSSLCDGALGTTNVEK- 97

Query: 93  HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS 152
             CGRP G+ FN   GDLY+ADA  GL  +   GGLA  +A    G PF F + LD+D +
Sbjct: 98  --CGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPT 155

Query: 153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDG 212
           TG++YFT  SS F  R+ +  + + D TG+  KYDP+ K VTVL+  LS   G A+S DG
Sbjct: 156 TGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDG 215

Query: 213 NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWVGIHSRRKGIS 271
           +++L+ + T   I RYW+K SKAGT E        PDNIKR    G FWV          
Sbjct: 216 SFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSNPDNIKRIGSTGNFWVA--------- 266

Query: 272 KLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRS 331
                              +V   +     S     A+++S  G VL+ +    +     
Sbjct: 267 ------------------SVVNSATGPTNPS-----AVKVSSAGKVLQTIPLKDKFGDTL 303

Query: 332 ISEVEEKDGNLWIGSVNMPYAGL 354
           +SEV E  G L+IG++  P+AG+
Sbjct: 304 VSEVNEYKGQLYIGALFGPFAGI 326

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/326 (37%), Positives = 176/326 (53%), Gaps = 25/326 (7%)

Query: 34  IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEH 93
           +GPES+A    G+  YTG +DG+I+K   + +     AR    +  C+G+ E     +E 
Sbjct: 99  VGPESIA--NFGDLIYTGTADGKIVKI--EGKSITVIARL--GKPPCDGSRE-----QEP 147

Query: 94  ICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSE---GIPFRFCNSLDID 150
            CGRPLG+     NG L++ADAY GL KV P  G  T + +  +   G    F N LD+ 
Sbjct: 148 SCGRPLGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVT 206

Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q    +YFTDSSS++QRR+++ +I+     GR+++YD  TK+VTVL+ NL F NG+ L  
Sbjct: 207 QDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFP 266

Query: 211 DGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269
           D   +L+AETT  RI R  +   +K G    V  LPGFPDNI+RS  GG+WV + + R  
Sbjct: 267 DEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPN 326

Query: 270 ISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG 325
               +L F    PWI  ++ KL    V     L+K      + + + E G  +    +  
Sbjct: 327 PGFSMLDFLSQKPWIKKLIFKLFSQDV-----LMKFVPRYSLVIELQESGACMRSFHDPH 381

Query: 326 RKMWRSISEVEEKDGNLWIGSVNMPY 351
             +   +SE  E DG+L++GS   PY
Sbjct: 382 GMVAAYVSEAHEHDGHLYLGSFRSPY 407

Salmo salar (taxid: 8030)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 177/326 (54%), Gaps = 26/326 (7%)

Query: 34  IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEH 93
           +GPES+A   +G+  +TG +DGR++K    +   +    + P    C+   +      E 
Sbjct: 100 VGPESIAH--IGDVMFTGTADGRVVKLENGEIETIARFGSGP----CKTRDD------EP 147

Query: 94  ICGRPLGLCFNKTNGDLYIADAYFGLLKVGP---EGGLATAVATQSEGIPFRFCNSLDID 150
           +CGRPLG+     NG L++ADAY GL +V P   E  L  +  T  EG    F N L + 
Sbjct: 148 VCGRPLGIRAGP-NGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVT 206

Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q    IYFTDSSS++QRR+++ +++ G   GRL++YD  T++V VLL  L FPNGV LS 
Sbjct: 207 QDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSP 266

Query: 211 DGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269
             +++L+AETT  RI R ++    K G    V  +PGFPDNI+ S  GG+WVG+ + R  
Sbjct: 267 AEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPN 326

Query: 270 ISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG 325
               +L F    PWI  ++ KL         +++K      + + +S+ G     L +  
Sbjct: 327 PGFSMLDFLSERPWIKRMIFKL-----FSQETVMKFVPRYSLVLELSDSGAFRRSLHDPD 381

Query: 326 RKMWRSISEVEEKDGNLWIGSVNMPY 351
             +   ISEV E DG+L++GS   P+
Sbjct: 382 GLVATYISEVHEHDGHLYLGSFRSPF 407

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 176/329 (53%), Gaps = 26/329 (7%)

Query: 31  EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAA 90
           E  +GPESLA   +G+  YTG +DG+I+K    + R +H   T   +  C G+ E+    
Sbjct: 96  ERLVGPESLA--NIGDVFYTGTADGKIVKI---EGRNIHVLATI-GKPPC-GSREH---- 144

Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFR---FCNSL 147
            EH CGRPLG+     NG L++ADAY GL +V P  G   ++ +  + I  R   F N L
Sbjct: 145 -EHTCGRPLGIRVGP-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDL 202

Query: 148 DIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA 207
           D+ Q    +YFTDSSS++QRR+ + +I+     GR+++YD  TK+V V++ NL FPNG+ 
Sbjct: 203 DVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQ 262

Query: 208 LSEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 266
           L  D   +L+AETT  RI R  +   +K G    +  LPGFPDNI+RS  GG+WV + + 
Sbjct: 263 LFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAV 322

Query: 267 RKGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILE 322
           R      +L F    PW+  ++ KL         +L+K      + + +   G  +    
Sbjct: 323 RPNPGFSMLDFLSQRPWLKKLIFKL-----FSQDTLLKFVPRYSLVVELQSDGTCVRSFH 377

Query: 323 EIGRKMWRSISEVEEKDGNLWIGSVNMPY 351
           +    +    SE  E  G+L++GS   PY
Sbjct: 378 DPQGLVSAYSSEAHEYSGHLYLGSFRSPY 406

Danio rerio (taxid: 7955)

>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2

 Score =  185 bits (469), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/266 (37%), Positives = 150/266 (56%), Gaps = 13/266 (4%)

Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
           +  P +  FD+  +G YT V DGR+IK+      +  FA  SP  N+  CE + +     
Sbjct: 44  SYAPNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCENSTD---PE 100

Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
           K  +CGR   + ++  N  +YI D ++ L  VG EGG AT +AT  +G+PF++  ++ +D
Sbjct: 101 KRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVD 160

Query: 151 QSTGIIYFTDSSSQFQRRNH--ISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVAL 208
           Q TGI+YFTD SS           ++ + D+TGRLMKYDP+TK+ T+LL  L  P G  +
Sbjct: 161 QRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEI 220

Query: 209 SEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268
           S DG+++++AE  S RI++YWL+  K G+ E +  +P  P NIKR+  G FWV       
Sbjct: 221 SADGSFVVVAEFLSNRIVKYWLEGPKKGSAEFLVTIPN-PGNIKRNSDGHFWVSSSEELD 279

Query: 269 G-----ISKLVLSFPWIGNVLIKLPI 289
           G     +    + F   GN+L  +P+
Sbjct: 280 GGQHGRVVSRGIKFDGFGNILQVIPL 305

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 172/328 (52%), Gaps = 30/328 (9%)

Query: 34  IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAAK 91
           +GPES+A   +G+  +TG +DGR++K    +   +    + P   RD             
Sbjct: 99  VGPESIA--NIGDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRD------------D 144

Query: 92  EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP---EGGLATAVATQSEGIPFRFCNSLD 148
           E  CGRPLG+     NG L++ DAY GL +V P   E  L  +  T  EG    F N L 
Sbjct: 145 EPACGRPLGIRAGP-NGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLT 203

Query: 149 IDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVAL 208
           + +    IYFTDSSS++QRR+++ +++ G   GRL++YD  TK+V VLL +L FPNGV L
Sbjct: 204 VTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQL 263

Query: 209 SEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 267
           S   +++L+ E    RI R+++    K G    V  LPGFPDNI+ S  GG+WV + + R
Sbjct: 264 SPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIR 323

Query: 268 KGISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE 323
                 +L F    P++  V+ KL         +++K      + + +S+ G  L  L +
Sbjct: 324 ANPGFSMLDFLSERPFLKKVIFKL-----FSQETVMKFVPRYSLVLELSDSGTFLRSLHD 378

Query: 324 IGRKMWRSISEVEEKDGNLWIGSVNMPY 351
              ++   +SE  E  G+L++GS   PY
Sbjct: 379 PEGQVVTYVSEAHEHSGHLYLGSFRAPY 406

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 169/327 (51%), Gaps = 30/327 (9%)

Query: 35  GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAAKE 92
           GPES+    +G+  +TG +DGR++K    +   +    + P   RD             E
Sbjct: 61  GPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRD------------DE 106

Query: 93  HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEG---GLATAVATQSEGIPFRFCNSLDI 149
             CGRPLG+     NG L++ DAY GL +V P+     L  +  T  EG    F N L I
Sbjct: 107 PTCGRPLGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTI 165

Query: 150 DQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 209
            +    IYFTDSSS++QRR+++ +++ G   GRL++YD  TK+V VLL  L FPNGV LS
Sbjct: 166 TRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLS 225

Query: 210 EDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 268
            + +++L+AET   RI R ++    K G    V  +PGFPDNI+ S  GG+WV   + R 
Sbjct: 226 PEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRA 285

Query: 269 GISKLVLSF----PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEI 324
                +L F    P+I  ++ KL         +++K      + + +S+ G     L + 
Sbjct: 286 NPGFSMLDFLSDKPFIKRMIFKL-----FSQETVMKFVPRYSLVLEVSDSGAFRRSLHDP 340

Query: 325 GRKMWRSISEVEEKDGNLWIGSVNMPY 351
             ++   +SE  E DG L++GS   P+
Sbjct: 341 DGQVVTYVSEAHEHDGYLYLGSFRSPF 367

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
224139738	349	predicted protein [Populus trichocarpa]	0.902	0.928	0.681	1e-134
224089989	368	predicted protein [Populus trichocarpa]	0.896	0.875	0.653	1e-126
255583686	375	strictosidine synthase, putative [Ricinu	0.896	0.858	0.636	1e-122
356504728	382	PREDICTED: adipocyte plasma membrane-ass	0.908	0.853	0.612	1e-117
357509505	393	Adipocyte plasma membrane-associated pro	0.905	0.826	0.594	1e-114
357509507	394	Adipocyte plasma membrane-associated pro	0.908	0.827	0.597	1e-113
225441248	378	PREDICTED: strictosidine synthase 1 isof	0.927	0.880	0.576	1e-110
388523081	376	unknown [Medicago truncatula]	0.863	0.824	0.603	1e-109
449438002	378	PREDICTED: adipocyte plasma membrane-ass	0.891	0.846	0.609	1e-108
297827767	376	hypothetical protein ARALYDRAFT_483200 [	0.894	0.853	0.574	1e-108

>gi|224139738|ref|XP_002323253.1| predicted protein [Populus trichocarpa] gi|222867883|gb|EEF05014.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/327 (68%), Positives = 279/327 (85%), Gaps = 3/327 (0%)

Query: 30  IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHA 89
           I GAIGPES AFD+LGEGPYT +SDGRIIKW  D++RW+ FA TSPNRDGC G +  DH 
Sbjct: 25  IVGAIGPESFAFDSLGEGPYTSLSDGRIIKWQGDKKRWIDFAVTSPNRDGCGGPH--DHH 82

Query: 90  AKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI 149
             EH+CGRPLG CF++T+GDLYIADAY GLL+VGPEGGLAT +AT ++GIPFRF NSLDI
Sbjct: 83  QMEHVCGRPLGSCFDETHGDLYIADAYMGLLRVGPEGGLATKIATHAQGIPFRFTNSLDI 142

Query: 150 DQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 209
           DQS+G IYFTDSS+Q+QRR+++SV+LSGDK+GRLMKYD A+KQVTVLL NL+FPNGVALS
Sbjct: 143 DQSSGAIYFTDSSTQYQRRDYLSVVLSGDKSGRLMKYDTASKQVTVLLKNLTFPNGVALS 202

Query: 210 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269
            DG+++LLAETTSCRILRYW+KTSKAG +E+ AQL GFPDNIKRSPRGG+WVGI+S+R+ 
Sbjct: 203 TDGSFVLLAETTSCRILRYWIKTSKAGALEVFAQLQGFPDNIKRSPRGGYWVGINSKREK 262

Query: 270 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMW 329
           +S+L+ S+PWIG VL+KLP+DI K  ++L K  G GG+A+R+SE G+++E+ E+      
Sbjct: 263 LSELLFSYPWIGKVLLKLPLDITKFQTALAKYRG-GGLAVRLSENGDIVEVFEDRDGNRL 321

Query: 330 RSISEVEEKDGNLWIGSVNMPYAGLYN 356
           +SISEV EKDG LWIGS+++P+AG + 
Sbjct: 322 KSISEVMEKDGKLWIGSIDLPFAGRFK 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089989|ref|XP_002308895.1| predicted protein [Populus trichocarpa] gi|222854871|gb|EEE92418.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/326 (65%), Positives = 266/326 (81%), Gaps = 4/326 (1%)

Query: 30  IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHA 89
           I GA GPES AFD+LG+GPY  +SDGRI+KW  +++ W  FA  SPNR  C+   +   A
Sbjct: 45  IVGAFGPESFAFDSLGKGPYASLSDGRIVKWQGNRKGWTDFAVASPNRYACK---QQPFA 101

Query: 90  AKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI 149
             EHICGRPLGLCF++T+GDLYIADAY GLL+VG +GGLAT + T ++GIP RF N LDI
Sbjct: 102 HTEHICGRPLGLCFDETHGDLYIADAYMGLLRVGTQGGLATKIVTHAQGIPLRFTNGLDI 161

Query: 150 DQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 209
           DQS+G IYFTDSSSQ+QRR ++SV+LSGDK+GRLMKYDP  KQV VLL NL+FPNGVALS
Sbjct: 162 DQSSGAIYFTDSSSQYQRRQYLSVVLSGDKSGRLMKYDPVNKQVRVLLSNLTFPNGVALS 221

Query: 210 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269
           +DGN+ILLAETT CRILRYW+KTSKAGT+E+ AQL GFPDNIKRSPRGG+WVG++SRR+ 
Sbjct: 222 KDGNFILLAETTRCRILRYWIKTSKAGTVEVFAQLQGFPDNIKRSPRGGYWVGMNSRREK 281

Query: 270 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMW 329
           +S+L+ S+PWIGNVL+KLP+DI  + S+L K  G+ G+A+R+SE G++LE+ E+      
Sbjct: 282 LSELLFSYPWIGNVLLKLPLDIAMLQSTLSKYRGS-GLAVRLSENGDILEVFEDNDGDGL 340

Query: 330 RSISEVEEKDGNLWIGSVNMPYAGLY 355
           +SISEV EKDG LWIGS+ +P+AG Y
Sbjct: 341 KSISEVMEKDGRLWIGSIALPFAGRY 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583686|ref|XP_002532597.1| strictosidine synthase, putative [Ricinus communis] gi|223527685|gb|EEF29794.1| strictosidine synthase, putative [Ricinus communis]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/327 (63%), Positives = 262/327 (80%), Gaps = 5/327 (1%)

Query: 31  EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAA 90
             A GPES AFD LG GPYTG+SDGRII+W + ++RW+ FA TS  RDGCEG +  D   
Sbjct: 51  RAATGPESFAFDGLGRGPYTGISDGRIIRWEEHEQRWIDFAVTSLYRDGCEGPH-VDQYQ 109

Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ-SEGIPFRFCNSLDI 149
            EHICGRPLGLCFN++NGDLY+ADAY GLLKVG +GGLAT +AT   + IPF F NSLD+
Sbjct: 110 MEHICGRPLGLCFNESNGDLYVADAYMGLLKVGRDGGLATTIATHGDDDIPFNFTNSLDV 169

Query: 150 DQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 209
           D S+  +YFTDSSS++QRR +I  ILSGDK+GRL++YDP  K+V +LLGNLSFPNGVALS
Sbjct: 170 DPSSSALYFTDSSSRYQRREYIYAILSGDKSGRLLRYDPEDKKVRILLGNLSFPNGVALS 229

Query: 210 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269
           +DGN+IL+AETT+CR+L+YW+KTSKAG +E+ AQ+PGFPDNIKRSPRGG+WV I+SRR  
Sbjct: 230 KDGNFILIAETTTCRVLKYWIKTSKAGILEVFAQVPGFPDNIKRSPRGGYWVAINSRRDK 289

Query: 270 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMW 329
             + VLS PWIGN LIKLP D++KI+S L K  G  GMA+R+ E G++LE+ E+  R  +
Sbjct: 290 FLEWVLSHPWIGNSLIKLPFDLMKIYSILGKYRGT-GMAVRLDENGDILEVFED--RNRF 346

Query: 330 RSISEVEEKDGNLWIGSVNMPYAGLYN 356
           +++SEV EKDG LWIGS+N+P+ G Y+
Sbjct: 347 KTLSEVMEKDGKLWIGSINLPFVGRYD 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504728|ref|XP_003521147.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Glycine max]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/330 (61%), Positives = 258/330 (78%), Gaps = 4/330 (1%)

Query: 30  IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHF---ARTSPNRDGCEGAYEY 86
           I+GA+GPES +FD  GEGPYTGVSDGRIIKWHQ Q RWL+F   A +S   + C G  + 
Sbjct: 43  IDGAVGPESFSFDPRGEGPYTGVSDGRIIKWHQTQNRWLNFSAIASSSHWDEECGGPCD- 101

Query: 87  DHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNS 146
           +H+ KEH+CGRPLGLCF+  + DLYIAD+Y GL+ VGP GG    + +  EG P  F N 
Sbjct: 102 EHSKKEHVCGRPLGLCFSTLSNDLYIADSYKGLVVVGPHGGTTRRLVSTIEGEPLAFTNG 161

Query: 147 LDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGV 206
           LD+DQ TG +YFT SSS++ RRN++S+ILS DKTG LMKY+P ++QV+VLL NLS+ NGV
Sbjct: 162 LDVDQRTGAVYFTSSSSKYPRRNYMSLILSRDKTGMLMKYEPQSEQVSVLLKNLSYANGV 221

Query: 207 ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 266
           ALS+DG YIL+ ETT+CR+LRYWL+T K GT+E+ A LPGFPDNIKRSPRGGFWVGI+SR
Sbjct: 222 ALSKDGEYILIIETTTCRVLRYWLETPKTGTLEVFADLPGFPDNIKRSPRGGFWVGIYSR 281

Query: 267 RKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGR 326
           R+ I + +LS+PWIG VL++LP+DI K +S L KL  + GMA+R+SEQG++LEI+ E   
Sbjct: 282 REKIIQWILSYPWIGKVLLRLPLDIPKAYSYLAKLKRSNGMAIRLSEQGDILEIVNEKNG 341

Query: 327 KMWRSISEVEEKDGNLWIGSVNMPYAGLYN 356
            + RSISEVEE+DG LW+GS++ P+ G YN
Sbjct: 342 SIGRSISEVEERDGILWVGSIDAPFVGKYN 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509505|ref|XP_003625041.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355500056|gb|AES81259.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/333 (59%), Positives = 258/333 (77%), Gaps = 8/333 (2%)

Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR------DGCEGAYEY 86
           A+GPESLAFD  GEGPYTG+S+G IIKWH+ + RW+ FA TS +       D C G Y+ 
Sbjct: 56  AVGPESLAFDPNGEGPYTGISNGHIIKWHRHENRWVDFAVTSSSHRGDDDVDECRGPYK- 114

Query: 87  DHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRFCN 145
           +H  KEHICGRPLGLCFN  +G LY+ADAY GL+ +   GG+A  V + + EG P  F N
Sbjct: 115 EHPKKEHICGRPLGLCFNVASGQLYVADAYMGLVVIESTGGIARKVISHAVEGQPLAFTN 174

Query: 146 SLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG 205
           SLDIDQ TG +YFT SSS+++RRN++S+IL+GD +GRL+KY+P ++QV VLL NL+F NG
Sbjct: 175 SLDIDQRTGAVYFTSSSSKYERRNYVSLILTGDSSGRLIKYEPKSEQVNVLLNNLTFANG 234

Query: 206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS 265
           VALS++GNYIL++ETT CRILRYWL+T KAGT+E+ A LPGFPDNIKRSPRGGFWVGI+S
Sbjct: 235 VALSKNGNYILISETTKCRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGINS 294

Query: 266 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG 325
           RR    + +LS+PWIG  L+ LP+DI K +S L K+ G+ G+A+R+SE+G++LEI+E+  
Sbjct: 295 RRGKFIQWMLSYPWIGKGLVMLPLDITKTYSYLAKVKGSTGLAIRLSEEGDLLEIVEDHK 354

Query: 326 RKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS 358
               RSISEVEE+DG LW+GS+++P+   YN S
Sbjct: 355 SGNRRSISEVEERDGVLWVGSIDVPFVIKYNNS 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509507|ref|XP_003625042.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355500057|gb|AES81260.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/335 (59%), Positives = 258/335 (77%), Gaps = 9/335 (2%)

Query: 32  GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS-PNR------DGCEGAY 84
           GA+GPES AFD  GEGPYTGVSDG IIKWH  Q RW  FA TS P+R      + C G Y
Sbjct: 55  GAVGPESFAFDPHGEGPYTGVSDGHIIKWHHHQNRWEDFAVTSSPHRGDDDDVEECGGPY 114

Query: 85  EYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRF 143
           + +H  KEHICGRPLGLCFN  +G LY+ADAY GL+ + P GG+A  V + + EG P  F
Sbjct: 115 K-EHPKKEHICGRPLGLCFNVASGQLYVADAYMGLVVIEPTGGIARKVISHAVEGQPLAF 173

Query: 144 CNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP 203
            NSLDIDQ TG +YFT SSS+++RR+++S+IL+GD +GRL+KY+P ++QV VLL NL+F 
Sbjct: 174 TNSLDIDQRTGAVYFTSSSSKYERRDYVSLILTGDNSGRLIKYEPKSEQVNVLLNNLTFA 233

Query: 204 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI 263
           NGVALS++GNYIL++ETT CRILRYWL+T KAGT+E+ A LPGFPDNIKRSPRGGFWVGI
Sbjct: 234 NGVALSKNGNYILISETTKCRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGI 293

Query: 264 HSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE 323
           +SRR+ + + ++S+PWIG  L+ LP+DI K +S L K  G+ G+A+R+SE+G+VLEI+E+
Sbjct: 294 NSRREKLIQWMISYPWIGKGLVMLPLDITKTYSYLSKKKGSPGLAIRLSEEGDVLEIVED 353

Query: 324 IGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS 358
                  SI+EVEE+DG LW+GS++ P+   YN S
Sbjct: 354 HRSGNRSSITEVEERDGVLWVGSLDAPFVIKYNNS 388

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441248|ref|XP_002267323.1| PREDICTED: strictosidine synthase 1 isoform 1 [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/342 (57%), Positives = 251/342 (73%), Gaps = 9/342 (2%)

Query: 18  INSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR 77
            ++    V+     GAIGPESLAFD++G GPYTGVSDGRIIKW +++ RW+ FA TS  R
Sbjct: 40  FSNQKDAVIPIPTPGAIGPESLAFDSVGGGPYTGVSDGRIIKWEENEERWVDFATTSSKR 99

Query: 78  DGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSE 137
           +GC G+   DH   EHICGRPLGL F++  G+LYIADAY GLL VGP GGLA+ VA++++
Sbjct: 100 EGCRGSR--DHVPLEHICGRPLGLSFSELTGELYIADAYMGLLVVGPNGGLASTVASEAQ 157

Query: 138 GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL 197
           G PF F N +DI Q+ G +YF+DSSS++QRRN ++ I+SGD TGRLMKY+P +KQVTVLL
Sbjct: 158 GTPFGFSNGVDIHQTNGAVYFSDSSSRYQRRNFVAAIISGDNTGRLMKYEPESKQVTVLL 217

Query: 198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG 257
            +L FPNGVALS++G++ILL+ET+ CRILR+WL+TSKAGT+E+   LPGFPDNIKR+ +G
Sbjct: 218 RSLGFPNGVALSKNGDFILLSETSRCRILRFWLQTSKAGTVEVFTLLPGFPDNIKRNSKG 277

Query: 258 GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSG--NGGMAMRISEQG 315
            FWVG+HSR+  + +  LS+PWIG  L+KLP      H  L   S     G A+R+SE+G
Sbjct: 278 EFWVGMHSRKGKLVEWFLSYPWIGRTLLKLPFP----HGFLSFFSKWRKTGFAVRLSEEG 333

Query: 316 NVLEILEEIGRKMW-RSISEVEEKDGNLWIGSVNMPYAGLYN 356
            VLEI E      W  SISEV E+DG+LWIGSV  P  G Y 
Sbjct: 334 EVLEIFEPKNGNGWISSISEVYERDGSLWIGSVTTPCVGKYE 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523081|gb|AFK49602.1| unknown [Medicago truncatula]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/318 (60%), Positives = 247/318 (77%), Gaps = 8/318 (2%)

Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR------DGCEGAYEY 86
           A+GPESLAFD  GEGPYTG+S+G IIKWH+ + RW+ FA TS +       D C G Y+ 
Sbjct: 56  AVGPESLAFDPNGEGPYTGISNGHIIKWHRHENRWVDFAVTSSSHRGDDDVDECRGPYK- 114

Query: 87  DHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRFCN 145
           +H  KEHICGRPLGLCFN  +G LY+ADAY GL+ +   GG+A  V + + EG P  F N
Sbjct: 115 EHPKKEHICGRPLGLCFNVASGQLYVADAYMGLVVIESTGGIARKVISHAVEGQPLAFTN 174

Query: 146 SLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG 205
           SLDIDQ TG +YFT SSS+++RRN++S+IL+GD +GRL+KY+P ++QV VLL NL+F NG
Sbjct: 175 SLDIDQRTGAVYFTSSSSKYERRNYVSLILTGDSSGRLIKYEPKSEQVNVLLNNLTFANG 234

Query: 206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS 265
           VALS++GNYIL++ETT CRILRYWL+T KAGT+E+ A LPGFPDNIKRSPRGGFWVGI+S
Sbjct: 235 VALSKNGNYILISETTKCRILRYWLETPKAGTLEVFANLPGFPDNIKRSPRGGFWVGINS 294

Query: 266 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG 325
           RR    + +LS+PWIG  L+ LP+DI K +S L K+ G+ G+A+R+SE+G++LEI+E+  
Sbjct: 295 RRGKFIQWMLSYPWIGKGLVMLPLDITKTYSYLAKVKGSTGLAIRLSEEGDLLEIVEDHK 354

Query: 326 RKMWRSISEVEEKDGNLW 343
               RSISEVEE+DG LW
Sbjct: 355 SGNRRSISEVEERDGVLW 372

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438002|ref|XP_004136779.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus] gi|449511648|ref|XP_004164017.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/333 (60%), Positives = 250/333 (75%), Gaps = 13/333 (3%)

Query: 30  IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHA 89
           I GA+GPES AFD+ G GPYTG+SDGRIIKW   Q+ W+ FA TS NR GCE        
Sbjct: 44  IHGAVGPESFAFDSSGGGPYTGISDGRIIKWLPQQQTWIDFAVTSSNRTGCEERER--RE 101

Query: 90  AKEHICGRPLGLCFNKTNGD---LYIADAYFGLLKVGPEGGLATAVATQSEGIPFR---- 142
            +E  CGRPLGL F K +GD   LYIADAY GLL+VG  GGLA  +  Q+     R    
Sbjct: 102 EREERCGRPLGLKF-KDSGDGDQLYIADAYMGLLRVGSNGGLAERLDFQTREDQLRGFDS 160

Query: 143 --FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL 200
             F N LDIDQ +G++YFTDSSS +QRRN  S +LSGD TGRLMKYDP TKQ+++LL NL
Sbjct: 161 LTFANGLDIDQFSGVVYFTDSSSHYQRRNFASSVLSGDNTGRLMKYDPKTKQLSLLLANL 220

Query: 201 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW 260
           SFPNGV+LS++G+++LLAETT CRIL+YWLKT KAG+ +++A+LPGFPDNIK S RGGFW
Sbjct: 221 SFPNGVSLSKNGDFLLLAETTKCRILKYWLKTVKAGSYDVIAELPGFPDNIKASRRGGFW 280

Query: 261 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI 320
           VGIHSR++G  +L+LS PWIG VL+KLP+DI K+HS L K   NGG+ MR+SE+G V+EI
Sbjct: 281 VGIHSRKRGSLRLILSQPWIGKVLLKLPLDIDKVHSFLGKWIKNGGIGMRVSEEGEVMEI 340

Query: 321 LEEIGRKMWRSISEVEEK-DGNLWIGSVNMPYA 352
           +E  G   W+S SEVEE+ DG +WIGS+N P+A
Sbjct: 341 IEGKGDLKWKSFSEVEEREDGVVWIGSINTPFA 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827767|ref|XP_002881766.1| hypothetical protein ARALYDRAFT_483200 [Arabidopsis lyrata subsp. lyrata] gi|297327605|gb|EFH58025.1| hypothetical protein ARALYDRAFT_483200 [Arabidopsis lyrata subsp. lyrata]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/331 (57%), Positives = 241/331 (72%), Gaps = 10/331 (3%)

Query: 32  GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK 91
           GA+GPES  FD  G+GPYTG+SDGRI+KW  +  RW+ FA T+  R+GCEG +E  H   
Sbjct: 47  GALGPESFVFDFSGDGPYTGLSDGRIVKWLANDSRWIDFAVTTSTREGCEGPHE--HQRT 104

Query: 92  EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ 151
           EH+CGRPLGL F+K+ GDLYIADAY GLLKVGP GG+A  V  +      RF NSLDID 
Sbjct: 105 EHVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVANQVLPRELNEALRFTNSLDIDP 164

Query: 152 STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSED 211
            TG+IYFTDSSS +QRRN+I  ++SGD+TGRLMKYDP TK+VT LL NL+FPNGV LS++
Sbjct: 165 QTGVIYFTDSSSVYQRRNYIGAMMSGDRTGRLMKYDPDTKEVTTLLSNLAFPNGVVLSQN 224

Query: 212 GNYILLAETTSCRILRYWLKTSKAG-----TIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS 265
           G+Y+L+ ET +CR+LRYWL  +          EI A+ LPGFPDNIKRSPRGGFWVG+++
Sbjct: 225 GDYLLVVETATCRVLRYWLSATSTTCKSRENYEIFAEGLPGFPDNIKRSPRGGFWVGLNT 284

Query: 266 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVL-EILEEI 324
           +   ++K  +S  W+G   + LP+D +KIHS   K +GN GMA+R+SE   V+ E+ E  
Sbjct: 285 KHSKLTKFAMSNAWLGRAALGLPVDWMKIHSVWAKYNGN-GMAVRLSEDSGVISEVFEGQ 343

Query: 325 GRKMWRSISEVEEKDGNLWIGSVNMPYAGLY 355
               W SISEVEE+D  LW+GSVN P+AG+Y
Sbjct: 344 KGNKWISISEVEERDATLWVGSVNTPFAGMY 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	359
TAIR|locus:2040312	376	SSL2 "strictosidine synthase-l	0.891	0.851	0.583	1.3e-102
TAIR|locus:2080575	374	AT3G57030 [Arabidopsis thalian	0.899	0.863	0.535	1.3e-91
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.885	0.805	0.493	9.1e-84
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.883	0.812	0.504	8.2e-83
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.835	0.744	0.446	2.4e-69
TAIR|locus:2080660	376	AT3G57010 [Arabidopsis thalian	0.852	0.813	0.443	3e-69
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.852	0.827	0.425	3.5e-68
TAIR|locus:2040297	394	SSL1 "strictosidine synthase-l	0.818	0.746	0.441	2.4e-67
TAIR|locus:2031486	335	SS2 "strictosidine synthase 2"	0.621	0.665	0.443	1.3e-53
TAIR|locus:2031496	325	AT1G74010 [Arabidopsis thalian	0.618	0.683	0.460	1.8e-52

TAIR|locus:2040312 SSL2 "strictosidine synthase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 193/331 (58%), Positives = 244/331 (73%)

Query:    32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK 91
             GA+GPES  FD  G+GPYTG+SDGRI+KW  ++ RW+ FA T+  R+GCEG +E  H   
Sbjct:    48 GALGPESFVFDFFGDGPYTGLSDGRIVKWLANESRWIDFAVTTSAREGCEGPHE--HQRT 105

Query:    92 EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ 151
             EH+CGRPLGL F+K+ GDLYIADAY GLLKVGP GG+AT V  +      RF NSLDI+ 
Sbjct:   106 EHVCGRPLGLAFDKSTGDLYIADAYMGLLKVGPTGGVATQVLPRELNEALRFTNSLDINP 165

Query:   152 STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSED 211
              TG++YFTDSSS +QRRN+I  ++SGDKTGRLMKYD  TKQVT LL NL+F NGVALS++
Sbjct:   166 RTGVVYFTDSSSVYQRRNYIGAMMSGDKTGRLMKYDN-TKQVTTLLSNLAFVNGVALSQN 224

Query:   212 GNYILLAETTSCRILRYWL-----KTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS 265
             G+Y+L+ ET  CRILRYWL     K+      EI A+ LPGFPDNIKRSPRGGFWVG+++
Sbjct:   225 GDYLLVVETAMCRILRYWLNETSVKSQSHDNYEIFAEGLPGFPDNIKRSPRGGFWVGLNT 284

Query:   266 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEEI 324
             +   ++K  +S  W+G   + LP+D +K+HS   + +GNG MA+R+SE  G +LE+ E  
Sbjct:   285 KHSKLTKFAMSNAWLGRAALGLPVDWMKVHSVWARYNGNG-MAVRLSEDSGVILEVFEGK 343

Query:   325 GRKMWRSISEVEEKDGNLWIGSVNMPYAGLY 355
                 W SISEVEEKDG LW+GSVN P+AG+Y
Sbjct:   344 NENKWISISEVEEKDGTLWVGSVNTPFAGMY 374

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2080575 AT3G57030 [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 175/327 (53%), Positives = 233/327 (71%)

Query:    30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHA 89
             + GA GPES+AFD  GEGPY GVSDGRI+KW  +   W  FA TS NR  C   +  +  
Sbjct:    51 LTGASGPESIAFDPAGEGPYVGVSDGRILKWRGEPLGWSDFAHTSSNRQECARPFAPE-- 108

Query:    90 AKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI 149
               EH+CGRPLGL F+K  GDLYIADAYFGLL VGP GGLA  + T++EG PFRF N LDI
Sbjct:   109 -LEHVCGRPLGLRFDKKTGDLYIADAYFGLLVVGPAGGLAKPLVTEAEGQPFRFTNDLDI 167

Query:   150 DQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS 209
             D+   +IYFTD+S++FQRR  ++ +L+ DKTGR +KYD ++K+ TVLL  L+F NGVALS
Sbjct:   168 DEQEDVIYFTDTSARFQRRQFLAAVLNVDKTGRFIKYDRSSKKATVLLQGLAFANGVALS 227

Query:   210 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG 269
             +D +++L+ ETT+C+ILR WL    AGT ++ A+LPGFPDNI+R+  G FWV +HS++  
Sbjct:   228 KDRSFVLVVETTTCKILRLWLSGPNAGTHQVFAELPGFPDNIRRNSNGEFWVALHSKKGL 287

Query:   270 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMW 329
              +KL L+  W  +++++LPI   ++HS L         A+++SE G VLE+LE+   K  
Sbjct:   288 FAKLSLTQTWFRDLVLRLPISPQRLHS-LFTGGIPHATAIKLSESGKVLEVLEDKEGKTL 346

Query:   330 RSISEVEEKDGNLWIGSVNMPYAGLYN 356
             R ISEVEEKDG LWIGSV +P+ G+Y+
Sbjct:   347 RFISEVEEKDGKLWIGSVLVPFLGVYD 373

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 160/324 (49%), Positives = 219/324 (67%)

Query:    35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDG-CEGAYE-YDHAAKE 92
             GPES+AFD+LG GPYTGV+DGR++ W  D  +W+ FA TS NR   C+       +   E
Sbjct:    75 GPESVAFDSLGRGPYTGVADGRVLFW--DGEKWIDFAYTSSNRSEICDPKPSALSYLRNE 132

Query:    93 HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS 152
             HICGRPLGL F+K  GDLYIADAY GLLKVGPEGGLAT + T++EG+P  F N LDI   
Sbjct:   133 HICGRPLGLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIADD 192

Query:   153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDG 212
              G +YFTDSS  +QRRN + ++ SGD TGR++KYDP  K+  VL+ NL FPNGV++S DG
Sbjct:   193 -GTVYFTDSSISYQRRNFLQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRDG 251

Query:   213 NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISK 272
             ++ +  E     + RYWLK  KAGT ++ A LPG PDN++ + +G FWV +H RR   S 
Sbjct:   252 SFFVFCEGDIGSLRRYWLKGEKAGTTDVFAYLPGHPDNVRTNQKGEFWVALHCRRNYYSY 311

Query:   273 LVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSI 332
             L+  +P +   +++LPI     +S  + L  +G + ++ S +G ++ +LE+   K+ RS+
Sbjct:   312 LMARYPKLRMFILRLPITARTHYSFQIGLRPHG-LVVKYSPEGKLMHVLEDSEGKVVRSV 370

Query:   333 SEVEEKDGNLWIGSVNMPYAGLYN 356
             SEVEEKDG LW+GSV M +  +Y+
Sbjct:   371 SEVEEKDGKLWMGSVLMNFVAVYD 394

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 164/325 (50%), Positives = 225/325 (69%)

Query:    35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDG-CEGAYEY-DHAAKE 92
             GPES+AFD  G GPYTGV+DGRI+ W+    RW  FA TS NR   C+      D+   E
Sbjct:    69 GPESIAFDPQGRGPYTGVADGRILFWNGT--RWTDFAYTSNNRSELCDPKPSLLDYLKDE 126

Query:    93 HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS 152
              ICGRPLGL F+K NGDLYIADAY G++KVGPEGGLAT+V  +++G+P RF N LDID  
Sbjct:   127 DICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDE 186

Query:   153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDG 212
              G +YFTDSSS FQRR  + +I+SG+ +GR++KY+P TK+ T L+ NL FPNG++L +DG
Sbjct:   187 -GNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDG 245

Query:   213 NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISK 272
             ++ +  E +  R+ +YWLK  KAGT E+VA L GFPDNI+ +  G FWV +H  R   + 
Sbjct:   246 SFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTH 305

Query:   273 LVLSFPWIGNVLIKLPIDIVKIHSSLVKLSG-NGGMAMRISEQGNVLEILEEIGRKMWRS 331
             L+  +P +    +KLPI  VK    L+++ G    +A++ SE+G VL++LE+   K+ ++
Sbjct:   306 LMAHYPRVRKFFLKLPIS-VKFQY-LLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKA 363

Query:   332 ISEVEEKDGNLWIGSVNMPYAGLYN 356
             +SEVEEKDG LW+GSV M +  +Y+
Sbjct:   364 VSEVEEKDGKLWMGSVLMSFIAVYD 388

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 141/316 (44%), Positives = 208/316 (65%)

Query:    24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR-TSP-NRDGC- 80
             G +++ ++   GPESL FD+LG GPYTG++DGR+++W  +   W  F+  TS  + + C 
Sbjct:    74 GKLEF-VDQVFGPESLEFDSLGRGPYTGLADGRVVRWMGEAIGWETFSVVTSKWSEEACV 132

Query:    81 EGAYEYDHAAKEH--ICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEG 138
              G     +   +H  +CGRPLGL F+K  G+LYIADAY+GLL VGPEGG+AT +AT  EG
Sbjct:   133 RGVDSTTNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEG 192

Query:   139 IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG 198
              P  F N LDI ++ G I+FTD+S ++ R NH  ++L G+ TGRL++YDP TK   ++L 
Sbjct:   193 KPILFANDLDIHRN-GSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLE 251

Query:   199 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG 258
              L+FPNG+ LS+D +++L  ETT+CR+++YWL+  K G +E+VA LPGFPDN++ +  G 
Sbjct:   252 GLAFPNGIQLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVADLPGFPDNVRINEEGQ 311

Query:   259 FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAM--RISEQGN 316
             FWV I   R    +++ + PWI ++  +LPI + K+   L K  G     +  R  E+G 
Sbjct:   312 FWVAIDCCRTPAQEVLTNNPWIRSIYFRLPIPM-KL---LAKTMGMRMYTVISRFDEEGK 367

Query:   317 VLEILEEI-GR--KMW 329
             VLE+LE+  G+  K+W
Sbjct:   368 VLEVLEDRQGKVMKLW 383

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2080660 AT3G57010 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 142/320 (44%), Positives = 199/320 (62%)

Query:    35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI 94
             GPESL FD  GEGPY GV+DGRI+KW  ++  W+ FA TSP+RD C       H      
Sbjct:    54 GPESLEFDPQGEGPYVGVTDGRILKWRGEELGWVDFAYTSPHRDNCSS-----HEVVPS- 107

Query:    95 CGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
             CGRPLGL F +  GDLYI D YFG++KVGPEGGLA  V  ++EG    F N  DID+   
Sbjct:   108 CGRPLGLSFERKTGDLYICDGYFGVMKVGPEGGLAELVVDEAEGRKVMFANQGDIDEEED 167

Query:   155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNY 214
             I YF DSS  +  R+   V LSG K GR+++YD   K+  V++  L  PNG+ALS++G++
Sbjct:   168 IFYFNDSSDTYHFRDVFYVSLSGTKVGRVIRYDMKKKEAKVIMDKLRLPNGLALSKNGSF 227

Query:   215 ILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV 274
             ++  E+++    R W+K  K+GT E+ A LPG PDNI+R+P G FWV +H ++   ++ V
Sbjct:   228 VVTCESSTNICHRIWVKGPKSGTNEVFATLPGSPDNIRRTPTGDFWVALHCKKNLFTRAV 287

Query:   275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSGNG--GMAMRIS-EQGNVLEILEEIGRKMWRS 331
             L   W+G   +    + +K+ + +  ++G    G+ +++S E G +LEILE+   K  + 
Sbjct:   288 LIHTWVGRFFM----NTMKMETVIHFMNGGKPHGIVVKLSGETGEILEILEDSEGKTVKY 343

Query:   332 ISEV-EEKDGNLWIGSVNMP 350
             +SE  E KDG LWIGSV  P
Sbjct:   344 VSEAYETKDGKLWIGSVYWP 363

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 136/320 (42%), Positives = 200/320 (62%)

Query:    35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI 94
             GPES+ FD  GEGPY  V DGRI+KW  D   W+ FA TSP+R  C              
Sbjct:    53 GPESIEFDPKGEGPYAAVVDGRILKWRGDDLGWVDFAYTSPHRGNCSKTEVVP------T 106

Query:    95 CGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
             CGRPLGL F K  GDLYI D Y GL+KVGPEGGLA  +  ++EG    F N  DID+   
Sbjct:   107 CGRPLGLTFEKKTGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEED 166

Query:   155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNY 214
             + YF DSS ++  R+   V +SG+++GR+++YD  TK+  V++ NL   NG+AL++D ++
Sbjct:   167 VFYFNDSSDKYHFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSF 226

Query:   215 ILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV 274
             ++  E+ +  + RYW+K  KAGT +I A++PG+PDNI+ +  G FW+G+H ++  I +L+
Sbjct:   227 LITCESGTSLVHRYWIKGPKAGTRDIFAKVPGYPDNIRLTSTGDFWIGLHCKKNLIGRLI 286

Query:   275 LSFPWIGNVLIKLPIDIVKIHSSLVKLSG--NGGMAMRIS-EQGNVLEILEEIGRKMWRS 331
             + + W+G ++ K     +K+   +  ++G    G+A++IS E G VLE+LE+   K  + 
Sbjct:   287 VKYKWLGKLVEKT----MKLEYVIAFINGFKPHGVAVKISGETGEVLELLEDKEGKTMKY 342

Query:   332 ISEVEEKD-GNLWIGSVNMP 350
             +SE  E+D G LW GSV  P
Sbjct:   343 VSEAYERDDGKLWFGSVYWP 362

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2040297 SSL1 "strictosidine synthase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 140/317 (44%), Positives = 191/317 (60%)

Query:    42 DALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL 101
             D  GEGPY GV+DGRI+KW  +   W+ FA +SP+R  C       H   E  CGRPLGL
Sbjct:    85 DPRGEGPYVGVTDGRILKWSGEDLGWIEFAYSSPHRKNCSS-----HKV-EPACGRPLGL 138

Query:   102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDS 161
              F K +GDLY  D Y G++KVGP+GGLA  V  + EG    F N +DID+    IYF DS
Sbjct:   139 SFEKKSGDLYFCDGYLGVMKVGPKGGLAEKVVDEVEGQKVMFANQMDIDEEEDAIYFNDS 198

Query:   162 SSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT 221
             S  +   +     L G+KTGR ++YD  TK+  V++  L FPNG+ALS DG+++L  E  
Sbjct:   199 SDTYHFGDVFYAFLCGEKTGRAIRYDKKTKEAKVIMDRLHFPNGLALSIDGSFVLSCEVP 258

Query:   222 SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIG 281
             +  + RYW K   AGT +I A+LPG+ DNI+R+  G FWV +HS++   S+L +  PW+G
Sbjct:   259 TQLVHRYWAKGPNAGTRDIFAKLPGYADNIRRTETGDFWVALHSKKTPFSRLSMIHPWVG 318

Query:   282 NVLIK-LPIDIV-------KIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSIS 333
                IK L ++++       K H+  VKLSG         + G ++EILE+   K  + IS
Sbjct:   319 KFFIKTLKMELLVFLFEGGKPHAVAVKLSG---------KTGEIMEILEDSEGKNMKFIS 369

Query:   334 EVEEKDGNLWIGSVNMP 350
             EV+E+DG LW GSV +P
Sbjct:   370 EVQERDGRLWFGSVFLP 386

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

TAIR|locus:2031486 SS2 "strictosidine synthase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 102/230 (44%), Positives = 141/230 (61%)

Query:    35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPNRDGCEGAYEYDHAAKE 92
             GPE+ AFD+ G+G YTGVS G+I+K+   +  ++ FA+   S N   C+G      A + 
Sbjct:    38 GPEAFAFDSTGKGFYTGVSGGKILKY-LPETGYVDFAQITESSNSSWCDGTIGTALAGR- 95

Query:    93 HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS 152
               CGRP G+ FN+  GDLY+ADA  GL  + P GGLAT +    +G PF+F + LD+D +
Sbjct:    96 --CGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPT 153

Query:   153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDG 212
             TG++YFT  SS+F     +  +   D TG+L KYDP+TK VTVL+  LS   G A+S DG
Sbjct:   154 TGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDG 213

Query:   213 NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWV 261
             +++L+++ T   I RYW+K  KAG+ E        PDNIKR    G FWV
Sbjct:   214 SFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSNPDNIKRIGSTGNFWV 263

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2031496 AT1G74010 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 106/230 (46%), Positives = 141/230 (61%)

Query:    35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPNRDGCEGAYEYDHAAKE 92
             GPES AFD+ G G YTGVS G+I+K+    + ++ FA+   S N   C GA     A K 
Sbjct:    37 GPESFAFDSTG-GFYTGVSGGKILKYVPG-KGYVDFAQITDSSNSAWCNGALGTAFAGK- 93

Query:    93 HICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS 152
               CGRP G+  N   GDLY+ADA  GL  + P GGLAT +A   +G PF+F + LD+D +
Sbjct:    94 --CGRPAGIALNSKTGDLYVADAPLGLHVISPAGGLATKLADSVDGKPFKFLDGLDVDPT 151

Query:   153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDG 212
             TG++YFT  SS+F  R  +  +   D +G+L KYDPATK VT L+  LS   G A+S DG
Sbjct:   152 TGVVYFTSFSSKFGPREVLIAVGLKDASGKLFKYDPATKAVTELMEGLSGAAGCAVSSDG 211

Query:   213 NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWV 261
             +++L++E     I +YW+K  KAGTIE  + L   PDNI+R    G FWV
Sbjct:   212 SFVLVSEFIKSNIKKYWIKGPKAGTIEDFSSLVSNPDNIRRVGSTGNFWV 261

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!
3rd Layer	4.3.3	0.766
3rd Layer	4.3.3.2	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	359
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	2e-39
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	7e-15
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	3e-05

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  134 bits (339), Expect = 2e-39
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 145 NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN 204
           N+LD+D  TG++YFTDSSS++ RR  I  +L GDKTGRLMKYDP+TK   VLL +L FPN
Sbjct: 1   NALDVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPN 60

Query: 205 GVALSEDGNYILLAETTSCRILRYWLK 231
           G+ALS DG+++L  ET   RI +YW+K
Sbjct: 61  GIALSPDGSFVLFCETPMKRISKYWIK 87

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 57/246 (23%), Positives = 83/246 (33%), Gaps = 47/246 (19%)

Query: 42  DALGEGP----------YTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK 91
             LGEGP          +  +  GRI +   +                  G      +  
Sbjct: 24  ATLGEGPVWDPDRGALLWVDILGGRIHRLDPE-----------------TGKKRVFPSPG 66

Query: 92  EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDID 150
               G   G   +   G   IA    G+  + P+ GG  T +A   +G+P    N   +D
Sbjct: 67  ----GFSSGALIDA--GGRLIA-CEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD 119

Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
              G I+F D                   TG L + DP    V +L  +L+ PNG+A S 
Sbjct: 120 -PDGRIWFGDMG------YFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP 172

Query: 211 DGNYILLAETTSCRILRYWLK-----TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS 265
           DG  + +A+T + RI RY L                 + PG PD +     G  WV    
Sbjct: 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW 232

Query: 266 RRKGIS 271
               + 
Sbjct: 233 GGGRVV 238

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 177 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRY--WLKTSK 234
           G + G L + DP  K V  +L  ++  NG+A S DG  +  A++ + RI  +        
Sbjct: 110 GGEPGALYRLDPDGK-VERVLDGITISNGLAWSPDGKTLYFADSPTRRIWAFDYDADGGL 168

Query: 235 AGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHS 265
                + A      G PD +     G  WV    
Sbjct: 169 ISNRRVFADFKDGDGEPDGMAVDAEGNVWVARWG 202

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	359
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.96
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.95
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.81
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.73
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.66
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.6
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.5
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.47
PRK11028	330	6-phosphogluconolactonase; Provisional	99.46
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.36
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.36
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.27
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.19
COG3391	381	Uncharacterized conserved protein [Function unknow	99.19
COG3391	381	Uncharacterized conserved protein [Function unknow	99.18
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.13
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.1
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.08
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.08
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.06
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.02
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.96
KOG2055	514	consensus WD40 repeat protein [General function pr	98.96
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.95
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.94
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.94
PRK04792	448	tolB translocation protein TolB; Provisional	98.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.91
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.9
PRK02889	427	tolB translocation protein TolB; Provisional	98.89
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.88
PRK04922	433	tolB translocation protein TolB; Provisional	98.85
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.83
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.83
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.83
PRK03629	429	tolB translocation protein TolB; Provisional	98.81
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.8
PRK05137	435	tolB translocation protein TolB; Provisional	98.8
PRK05137	435	tolB translocation protein TolB; Provisional	98.78
PRK00178	430	tolB translocation protein TolB; Provisional	98.78
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.75
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.74
PRK02888	635	nitrous-oxide reductase; Validated	98.74
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.73
PRK04043	419	tolB translocation protein TolB; Provisional	98.72
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.69
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.66
PRK03629	429	tolB translocation protein TolB; Provisional	98.66
PRK01742	429	tolB translocation protein TolB; Provisional	98.65
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.6
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.6
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.59
PRK04792	448	tolB translocation protein TolB; Provisional	98.58
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.58
PRK04922	433	tolB translocation protein TolB; Provisional	98.56
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.55
PTZ00421	493	coronin; Provisional	98.54
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.5
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.48
PRK00178	430	tolB translocation protein TolB; Provisional	98.47
PRK02889	427	tolB translocation protein TolB; Provisional	98.46
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.46
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	98.45
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.44
KOG0286	343	consensus G-protein beta subunit [General function	98.44
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.43
KOG0266	456	consensus WD40 repeat-containing protein [General	98.43
KOG0286	343	consensus G-protein beta subunit [General function	98.43
KOG0266	456	consensus WD40 repeat-containing protein [General	98.41
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.4
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.39
KOG0282	503	consensus mRNA splicing factor [Function unknown]	98.39
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.38
PLN00181	793	protein SPA1-RELATED; Provisional	98.38
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.36
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.35
PRK01029	428	tolB translocation protein TolB; Provisional	98.34
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.32
PRK01742	429	tolB translocation protein TolB; Provisional	98.31
KOG2055	514	consensus WD40 repeat protein [General function pr	98.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.29
COG4946	668	Uncharacterized protein related to the periplasmic	98.29
KOG0316	307	consensus Conserved WD40 repeat-containing protein	98.29
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.26
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	98.23
PRK02888	635	nitrous-oxide reductase; Validated	98.23
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.23
PRK04043	419	tolB translocation protein TolB; Provisional	98.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.19
PTZ00420	568	coronin; Provisional	98.16
KOG2048	691	consensus WD40 repeat protein [General function pr	98.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.16
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.14
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	98.14
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.13
KOG0278	334	consensus Serine/threonine kinase receptor-associa	98.12
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.12
COG4946	668	Uncharacterized protein related to the periplasmic	98.11
PLN00181	793	protein SPA1-RELATED; Provisional	98.08
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.07
PRK01029	428	tolB translocation protein TolB; Provisional	98.03
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.02
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.99
KOG1273	405	consensus WD40 repeat protein [General function pr	97.99
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.98
KOG1274	933	consensus WD40 repeat protein [General function pr	97.96
KOG0296	399	consensus Angio-associated migratory cell protein	97.95
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.95
KOG2096	420	consensus WD40 repeat protein [General function pr	97.95
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.9
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.86
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.86
PTZ00421	493	coronin; Provisional	97.83
KOG0310	487	consensus Conserved WD40 repeat-containing protein	97.82
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.81
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.8
KOG1539	910	consensus WD repeat protein [General function pred	97.79
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.78
PTZ00420	568	coronin; Provisional	97.76
KOG0310	487	consensus Conserved WD40 repeat-containing protein	97.75
KOG0289	506	consensus mRNA splicing factor [General function p	97.74
KOG2048	691	consensus WD40 repeat protein [General function pr	97.68
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.64
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.63
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.62
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.61
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	97.6
KOG0643	327	consensus Translation initiation factor 3, subunit	97.6
KOG1539	910	consensus WD repeat protein [General function pred	97.59
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.54
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.54
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	97.52
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.48
KOG4328	498	consensus WD40 protein [Function unknown]	97.48
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.45
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.44
KOG0289	506	consensus mRNA splicing factor [General function p	97.44
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.44
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.42
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.4
KOG0296	399	consensus Angio-associated migratory cell protein	97.39
KOG0645	312	consensus WD40 repeat protein [General function pr	97.37
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.37
KOG2139	445	consensus WD40 repeat protein [General function pr	97.34
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.33
KOG0646	476	consensus WD40 repeat protein [General function pr	97.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.32
COG3211	616	PhoX Predicted phosphatase [General function predi	97.31
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	97.3
KOG0639	705	consensus Transducin-like enhancer of split protei	97.29
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	97.28
KOG0639	705	consensus Transducin-like enhancer of split protei	97.27
KOG0973	942	consensus Histone transcription regulator HIRA, WD	97.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.22
KOG0645	312	consensus WD40 repeat protein [General function pr	97.2
KOG0288	459	consensus WD40 repeat protein TipD [General functi	97.19
KOG1274	933	consensus WD40 repeat protein [General function pr	97.16
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.16
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.13
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	97.11
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.07
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.07
KOG0640	430	consensus mRNA cleavage stimulating factor complex	97.06
KOG0284	464	consensus Polyadenylation factor I complex, subuni	97.05
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.04
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	97.03
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	97.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.01
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.01
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	97.0
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.0
KOG0646	476	consensus WD40 repeat protein [General function pr	96.98
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.95
KOG2096	420	consensus WD40 repeat protein [General function pr	96.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.9
KOG4328	498	consensus WD40 protein [Function unknown]	96.88
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	96.86
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	96.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	96.83
PHA02713	557	hypothetical protein; Provisional	96.82
KOG0973	942	consensus Histone transcription regulator HIRA, WD	96.79
KOG2139	445	consensus WD40 repeat protein [General function pr	96.78
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	96.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	96.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.73
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.7
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	96.67
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	96.65
KOG1273	405	consensus WD40 repeat protein [General function pr	96.64
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.63
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.63
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.62
KOG0643	327	consensus Translation initiation factor 3, subunit	96.58
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.55
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.48
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	96.48
KOG2321	703	consensus WD40 repeat protein [General function pr	96.47
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.47
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.45
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	96.44
PRK13684	334	Ycf48-like protein; Provisional	96.44
KOG0284	464	consensus Polyadenylation factor I complex, subuni	96.4
COG3211	616	PhoX Predicted phosphatase [General function predi	96.39
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.33
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.08
KOG0294	362	consensus WD40 repeat-containing protein [Function	96.05
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.05
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.04
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.99
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	95.94
PHA02713	557	hypothetical protein; Provisional	95.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	95.89
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	95.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	95.86
KOG0295	406	consensus WD40 repeat-containing protein [Function	95.84
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	95.71
KOG0301	745	consensus Phospholipase A2-activating protein (con	95.6
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	95.57
KOG1963	792	consensus WD40 repeat protein [General function pr	95.55
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.5
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.43
PHA03098	534	kelch-like protein; Provisional	95.41
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	95.41
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	95.41
KOG2321	703	consensus WD40 repeat protein [General function pr	95.29
KOG0302	440	consensus Ribosome Assembly protein [General funct	95.27
PHA02790	480	Kelch-like protein; Provisional	95.24
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.23
KOG0649	325	consensus WD40 repeat protein [General function pr	95.18
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	95.16
KOG1963	792	consensus WD40 repeat protein [General function pr	95.13
PF07494	24	Reg_prop: Two component regulator propeller; Inter	95.01
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.96
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	94.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	94.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	94.75
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.7
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.68
KOG0295	406	consensus WD40 repeat-containing protein [Function	94.63
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	94.55
PHA02790	480	Kelch-like protein; Provisional	94.48
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.45
KOG0647	347	consensus mRNA export protein (contains WD40 repea	94.42
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	94.33
KOG3881	412	consensus Uncharacterized conserved protein [Funct	94.22
PHA03098	534	kelch-like protein; Provisional	94.15
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.12
KOG0308	735	consensus Conserved WD40 repeat-containing protein	94.06
KOG2110	391	consensus Uncharacterized conserved protein, conta	93.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.93
KOG1188	376	consensus WD40 repeat protein [General function pr	93.88
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	93.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	93.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.6
KOG3621	726	consensus WD40 repeat-containing protein [General	93.59
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	93.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.56
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	93.44
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.27
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	93.26
KOG3881	412	consensus Uncharacterized conserved protein [Funct	93.16
PRK13616	591	lipoprotein LpqB; Provisional	93.11
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.1
KOG4227	609	consensus WD40 repeat protein [General function pr	92.9
PRK13616	591	lipoprotein LpqB; Provisional	92.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	92.83
KOG0649	325	consensus WD40 repeat protein [General function pr	92.74
PRK13684	334	Ycf48-like protein; Provisional	92.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.52
KOG0641	350	consensus WD40 repeat protein [General function pr	92.51
KOG0270	463	consensus WD40 repeat-containing protein [Function	92.49
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	92.48
COG5276	370	Uncharacterized conserved protein [Function unknow	92.4
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	92.3
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.19
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	92.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.78
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	91.7
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	91.66
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	91.52
KOG0641	350	consensus WD40 repeat protein [General function pr	91.48
KOG0300	481	consensus WD40 repeat-containing protein [Function	91.46
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	91.19
KOG4547	541	consensus WD40 repeat-containing protein [General	90.98
KOG2315	566	consensus Predicted translation initiation factor	90.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.8
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	90.55
KOG0303	472	consensus Actin-binding protein Coronin, contains	90.29
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	90.28
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	90.26
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	90.14
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	90.03
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	89.98
KOG0269	839	consensus WD40 repeat-containing protein [Function	89.82
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	89.8
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	89.52
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	89.28
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	89.04
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	88.59
KOG1215	877	consensus Low-density lipoprotein receptors contai	88.4
KOG0647	347	consensus mRNA export protein (contains WD40 repea	87.99
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	87.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	87.79
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.61
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	87.61
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	87.21
KOG4547	541	consensus WD40 repeat-containing protein [General	87.2
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	87.16
PLN02153	341	epithiospecifier protein	87.11
KOG2111	346	consensus Uncharacterized conserved protein, conta	86.78
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.53
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	86.18
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.16
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	85.97
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	85.9
PLN02153	341	epithiospecifier protein	85.82
PLN02193	470	nitrile-specifier protein	85.49
KOG1215	877	consensus Low-density lipoprotein receptors contai	85.49
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.39
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.93
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	84.83
KOG0269	839	consensus WD40 repeat-containing protein [Function	84.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	84.51
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.31
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	84.03
KOG0267	825	consensus Microtubule severing protein katanin p80	83.94
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	83.4
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	82.5
KOG1230	521	consensus Protein containing repeated kelch motifs	82.28
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	81.91
PLN02193	470	nitrile-specifier protein	80.8

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=8.1e-37  Score=268.17  Aligned_cols=326  Identities=48%  Similarity=0.851  Sum_probs=283.1

Q ss_pred             EeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeec--CCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           28 YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ++.....+||.+.+|+.|.=-|++..++++.+|......|..+...  ..++..|.+|..   ....+.+++|.||+++.
T Consensus        48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~---~~~e~~CGRPLGl~f~~  124 (376)
T KOG1520|consen   48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGS---FETEPLCGRPLGIRFDK  124 (376)
T ss_pred             ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcc---eecccccCCcceEEecc
Confidence            3444578999999999886688888889999999886678888877  666666655422   24556789999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +.|+|||||.+-|++.+++++++.+.+.+...+.++.+.|++.++++|. +|++|++++|.++++...+.++..+|++++
T Consensus       125 ~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~  203 (376)
T KOG1520|consen  125 KGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFR  203 (376)
T ss_pred             CCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEE
Confidence            7789999999999999999999877777777788889999999999999 999999999999999999999999999999


Q ss_pred             EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEe
Q 018242          186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      ||+.++..+.+..++..|||+++++|+..++++++...+|.+|.+++++.++.+.|++ +||+||||..+++|.+||+..
T Consensus       204 YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~  283 (376)
T KOG1520|consen  204 YDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALH  283 (376)
T ss_pred             ecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEe
Confidence            9999988888888999999999999999999999999999999999998888899998 999999999999999999998


Q ss_pred             cCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEE
Q 018242          265 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI  344 (359)
Q Consensus       265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~i  344 (359)
                      ..+...+++...++.-++.+..++....-......+..++ ..+...+.+|++++++++++|+....+..+.+.+|+||+
T Consensus       284 ~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~-~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~Lyi  362 (376)
T KOG1520|consen  284 SKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPH-SAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYI  362 (376)
T ss_pred             cccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCc-eEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEE
Confidence            8888788888888888888888776655555555555554 456666799999999999999988888888888999999


Q ss_pred             ecCCCCeEEEEcCC
Q 018242          345 GSVNMPYAGLYNYS  358 (359)
Q Consensus       345 g~~~~~~l~~~~~~  358 (359)
                      |+..+++|.++++.
T Consensus       363 GS~~~p~i~~lkl~  376 (376)
T KOG1520|consen  363 GSLFNPYIARLKLP  376 (376)
T ss_pred             cccCcceeEEEecC
Confidence            99999999999873

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.96  E-value=1.9e-27  Score=208.70  Aligned_cols=229  Identities=26%  Similarity=0.466  Sum_probs=174.5

Q ss_pred             CceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ||++++++ +|.++|++..++.|+++++++++...+.                     .  ..|.|++++..++.+|+++
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------------------~--~~~~G~~~~~~~g~l~v~~   58 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------------------L--PGPNGMAFDRPDGRLYVAD   58 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------------------S--SSEEEEEEECTTSEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------------------c--CCCceEEEEccCCEEEEEE
Confidence            79999998 8998999999999999999987543321                     1  1288999994489999998


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCc-cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGI-PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      . .++.++|+++++++.+.....+. +...||+++++++|+ +|++++.......         ...|.|++++++ ++.
T Consensus        59 ~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~---------~~~g~v~~~~~~-~~~  126 (246)
T PF08450_consen   59 S-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG---------IDPGSVYRIDPD-GKV  126 (246)
T ss_dssp             T-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC---------GGSEEEEEEETT-SEE
T ss_pred             c-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc---------ccccceEEECCC-CeE
Confidence            5 46777799999988776643333 678999999999999 9999876331100         011789999998 788


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC--CcceeEeecCC---CCCCceEECCCCCEEEEEecCCC
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK--AGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~---~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ..+...+..||||++++|++.||++++..++|++|+++...  ....+.+...+   +.|+|+++|++|+||++.+..+.
T Consensus       127 ~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  127 TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            77777788999999999999999999999999999997432  34455555432   35999999999999999997665


Q ss_pred             ccccccccCCccceeeecCCccceeeeeecccccCc
Q 018242          269 GISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                           +.+++++|+++..+++|.+.+++|++++...
T Consensus       207 -----I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  207 -----IVVFDPDGKLLREIELPVPRPTNCAFGGPDG  237 (246)
T ss_dssp             -----EEEEETTSCEEEEEE-SSSSEEEEEEESTTS
T ss_pred             -----EEEECCCccEEEEEcCCCCCEEEEEEECCCC
Confidence                 6777777777777777766777777765443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.95  E-value=6.8e-25  Score=194.85  Aligned_cols=243  Identities=24%  Similarity=0.335  Sum_probs=181.5

Q ss_pred             EEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+...+..-.|+..++++.. ++|++..+++|++|++.+++.+.+.                     .....+.++.+++
T Consensus        18 ~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---------------------~p~~~~~~~~~d~   76 (307)
T COG3386          18 TLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---------------------SPGGFSSGALIDA   76 (307)
T ss_pred             eEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---------------------CCCCcccceeecC
Confidence            44455567889999998765 8899999999999999877555553                     1222355677777


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                       ++.|+++.  .++.+++++.+.. +.+.....+.+...+|++.++++|+ +|+++++. +.     .........|.||
T Consensus        77 -~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~-~~-----~~~~~~~~~G~ly  146 (307)
T COG3386          77 -GGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGY-FD-----LGKSEERPTGSLY  146 (307)
T ss_pred             -CCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCc-cc-----cCccccCCcceEE
Confidence             88888875  4677777676655 5665655666778999999999999 99999883 11     0000123457899


Q ss_pred             EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC--CCCcceeEe--ec-CCCCCCceEECCCCCE
Q 018242          185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGTIEIV--AQ-LPGFPDNIKRSPRGGF  259 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~--~~~~~~~~~--~~-~~~~p~~i~~d~~G~l  259 (359)
                      +++|.+...+.+...+..||||||+||++++|++++..++|++|+++.  ........+  .. .++.|+|+++|++|+|
T Consensus       147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l  226 (307)
T COG3386         147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL  226 (307)
T ss_pred             EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE
Confidence            999975555555555889999999999999999999999999999873  112222222  22 4688999999999999


Q ss_pred             EEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCc
Q 018242          260 WVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       260 wv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      |++...++..    +.+++++|+++..+.+|...+++|+|++...
T Consensus       227 w~~a~~~g~~----v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~  267 (307)
T COG3386         227 WVAAVWGGGR----VVRFNPDGKLLGEIKLPVKRPTNPAFGGPDL  267 (307)
T ss_pred             EEecccCCce----EEEECCCCcEEEEEECCCCCCccceEeCCCc
Confidence            9655554322    8889999999999999999999999987654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.89  E-value=1.2e-20  Score=157.81  Aligned_cols=280  Identities=17%  Similarity=0.198  Sum_probs=203.1

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      ...++++.-..|..++.++||.++|.+...+.|-++||.+++.++++.                    .....|++|.+.
T Consensus        53 ~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL--------------------g~Ga~Phgiv~g  112 (353)
T COG4257          53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL--------------------GSGASPHGIVVG  112 (353)
T ss_pred             cceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEec--------------------CCCCCCceEEEC
Confidence            457888888999999999999988899999999999999998877641                    233569999999


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          105 KTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       105 ~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      + +|..|+++....|.|+++++.+++.+.-. ........+..++|++|+ ||++...                  |---
T Consensus       113 p-dg~~Witd~~~aI~R~dpkt~evt~f~lp-~~~a~~nlet~vfD~~G~-lWFt~q~------------------G~yG  171 (353)
T COG4257         113 P-DGSAWITDTGLAIGRLDPKTLEVTRFPLP-LEHADANLETAVFDPWGN-LWFTGQI------------------GAYG  171 (353)
T ss_pred             C-CCCeeEecCcceeEEecCcccceEEeecc-cccCCCcccceeeCCCcc-EEEeecc------------------ccce
Confidence            9 99999999877999999999988876432 122334677899999999 9999432                  2233


Q ss_pred             EEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCCCCCceEECCCCCEE
Q 018242          185 KYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGFW  260 (359)
Q Consensus       185 ~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~lw  260 (359)
                      +.||.++.++.+. .-...|+||+.+|||. +|+++...+.|.++|....   ..+++..   +....+.+-.|+.|++|
T Consensus       172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~w  247 (353)
T COG4257         172 RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAW  247 (353)
T ss_pred             ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEE
Confidence            7888887777664 2346799999999998 8999888899999985432   2333322   22234567889999999


Q ss_pred             EEEecCCCccccccccCCccceeeecCCccce--eeeeecccccC-------cceEEEEECCCCCEEEEEEccCCceeec
Q 018242          261 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV--KIHSSLVKLSG-------NGGMAMRISEQGNVLEILEEIGRKMWRS  331 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~g~~~~~  331 (359)
                      +++++.+.     +..|++.-+.-...++|..  .+.+..++...       ..+.+.+||++...+.+|..+.-  +..
T Consensus       248 ittwg~g~-----l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~--n~g  320 (353)
T COG4257         248 ITTWGTGS-----LHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP--NSG  320 (353)
T ss_pred             EeccCCce-----eeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC--CCC
Confidence            99999887     7788776555445555433  23333333111       12678899999888888764332  222


Q ss_pred             eEEEEEeCCEEEEecCCCCeEEEEc
Q 018242          332 ISEVEEKDGNLWIGSVNMPYAGLYN  356 (359)
Q Consensus       332 ~~~~~~~~g~l~ig~~~~~~l~~~~  356 (359)
                      ...+....|++|++.-.-+.+.+++
T Consensus       321 n~ql~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         321 NIQLDGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             ceeccCCCCceeecccCcceeEEEE
Confidence            2233445899999987777777665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.81  E-value=1.5e-16  Score=163.97  Aligned_cols=276  Identities=18%  Similarity=0.242  Sum_probs=173.5

Q ss_pred             eCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           30 IEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      ..++..|.+++++++ |+++++++.+++|.++|+++.....+...... +...++.      .....+.|+||+++++++
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~-G~~dG~~------~~a~f~~P~GIavd~~gn  636 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEE-GLRDGSF------EDATFNRPQGLAYNAKKN  636 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCc-CCCCCch------hccccCCCcEEEEeCCCC
Confidence            345789999999975 66556678889999999986533333211100 0001110      012345699999999667


Q ss_pred             eEEEEeCCC-cEEEEeCCCCeEEEEeecC------CC------ccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          109 DLYIADAYF-GLLKVGPEGGLATAVATQS------EG------IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       109 ~l~v~~~~~-~i~~~~~~~~~~~~~~~~~------~~------~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      .|||++..+ .|.++|..++.++.+....      .+      ..+..|.+++++++++.+||++.+             
T Consensus       637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-------------  703 (1057)
T PLN02919        637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-------------  703 (1057)
T ss_pred             EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-------------
Confidence            799998754 5888999988887664321      00      124678999999944349999765             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeC---------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCccee-
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLG---------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIE-  239 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~---------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~-  239 (359)
                          .+.|+++|+.++.+..+..               .+..|.||++++|++.||+++..+++|.+|+++........ 
T Consensus       704 ----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        704 ----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             ----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence                3468888877665543321               23568999999999999999999999999998643211000 


Q ss_pred             ----------Eeec--------CCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccc
Q 018242          240 ----------IVAQ--------LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKL  301 (359)
Q Consensus       240 ----------~~~~--------~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  301 (359)
                                .+..        .-..|.++++|++|++||+...++.     +.+++..+..+..+...           
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~tiaG~-----------  843 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTTLAGT-----------  843 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEEEecc-----------
Confidence                      0000        0124889999999999999987664     55554432222111000           


Q ss_pred             cCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          302 SGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       302 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      ... +    + .+|....       .....+.++..+ +|+|||++..++.|.+++++
T Consensus       844 G~~-G----~-~dG~~~~-------a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        844 GKA-G----F-KDGKALK-------AQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CCc-C----C-CCCcccc-------cccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            000 0    0 1121110       012344555544 78999999999999998875

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=6.8e-16  Score=126.73  Aligned_cols=232  Identities=13%  Similarity=0.130  Sum_probs=150.7

Q ss_pred             ceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCeEEEEe
Q 018242           37 ESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGDLYIAD  114 (359)
Q Consensus        37 ~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~l~v~~  114 (359)
                      |++.++. .+.+||++...+.|++||..++.........                   ..  ..|+.+--. +-..++..
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~-------------------p~--~ag~ilpv~~~~q~~~v~   76 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG-------------------PP--SAGFILPVEGGPQEFAVG   76 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec-------------------Cc--ceeEEEEecCCCceEEEe
Confidence            4555553 4678999999999999999887655432110                   00  122222210 11223222


Q ss_pred             CCC--cEEEEeCCCCeEEEEee---cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          115 AYF--GLLKVGPEGGLATAVAT---QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       115 ~~~--~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      -+.  +|..+|-.......+.+   ..+.......|+-.+||+|+ .|.+.+...-.    .+    ....+.++.+-+.
T Consensus        77 ~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gr-yy~GtMad~~~----~l----e~~~g~Ly~~~~~  147 (310)
T KOG4499|consen   77 CGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGR-YYGGTMADFGD----DL----EPIGGELYSWLAG  147 (310)
T ss_pred             ecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCc-eeeeeeccccc----cc----cccccEEEEeccC
Confidence            222  23334322222222211   22233456778889999999 78886642110    00    0123456666654


Q ss_pred             CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE--cCCCCCcceeEeecC-------CCCCCceEECCCCCEE
Q 018242          190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW--LKTSKAGTIEIVAQL-------PGFPDNIKRSPRGGFW  260 (359)
Q Consensus       190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~--~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G~lw  260 (359)
                       ++++.+.....-+||++++.|.+..|+.++.+..|..||  ..++.++.++.+.++       +-.|+||++|.+|+||
T Consensus       148 -h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~  226 (310)
T KOG4499|consen  148 -HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLY  226 (310)
T ss_pred             -CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEE
Confidence             678878777888999999999999999999999996665  555555555554431       2469999999999999


Q ss_pred             EEEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCc
Q 018242          261 VGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      |+++.++.     +..++ .+||++..+.+|...+++|||++...
T Consensus       227 Va~~ng~~-----V~~~dp~tGK~L~eiklPt~qitsccFgGkn~  266 (310)
T KOG4499|consen  227 VATFNGGT-----VQKVDPTTGKILLEIKLPTPQITSCCFGGKNL  266 (310)
T ss_pred             EEEecCcE-----EEEECCCCCcEEEEEEcCCCceEEEEecCCCc
Confidence            99999887     55554 58999999999999999999998754

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.72  E-value=1.9e-14  Score=132.33  Aligned_cols=203  Identities=18%  Similarity=0.209  Sum_probs=131.5

Q ss_pred             CCCCCceEEEccCCCeeEEecC----CCEEEEEEc--CCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           32 GAIGPESLAFDALGEGPYTGVS----DGRIIKWHQ--DQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~----~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ....|..+++++++++||+...    .+.|..|..  ++++++.+.                  ........|..+++++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~------------------~~~~~g~~p~~i~~~~   96 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN------------------SVPSGGSSPCHIAVDP   96 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE------------------EEEESSSCEEEEEECT
T ss_pred             CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee------------------eeccCCCCcEEEEEec
Confidence            4579999999999999998876    367766654  434555443                  2222446688999999


Q ss_pred             CCCeEEEEeCCCc-EEEEeCCC-CeEEEEeec---------CCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          106 TNGDLYIADAYFG-LLKVGPEG-GLATAVATQ---------SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       106 ~~g~l~v~~~~~~-i~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ++..||+++...+ +..++.+. +........         ...+....|+.+.++|+|+++|++|.+.+          
T Consensus        97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D----------  166 (345)
T PF10282_consen   97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD----------  166 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT----------
T ss_pred             CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC----------
Confidence            8888999987654 65665543 444332110         01123457899999999999999987743          


Q ss_pred             eecCCCceEEEEeCCCCcEEE----EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecCC---
Q 018242          175 LSGDKTGRLMKYDPATKQVTV----LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLP---  245 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~----~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~---  245 (359)
                           .-.++.++..++++..    .......|+.++|+||++++|+.+..++.|.+|+++..  .....+....++   
T Consensus       167 -----~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~  241 (345)
T PF10282_consen  167 -----RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF  241 (345)
T ss_dssp             -----EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred             -----EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence                 1234445544433533    23456789999999999999999999999999998732  222222222221   


Q ss_pred             ---CCCCceEECCCCC-EEEEEecCC
Q 018242          246 ---GFPDNIKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       246 ---~~p~~i~~d~~G~-lwv~~~~~~  267 (359)
                         ..+.+|+++++|+ ||++..+..
T Consensus       242 ~~~~~~~~i~ispdg~~lyvsnr~~~  267 (345)
T PF10282_consen  242 TGENAPAEIAISPDGRFLYVSNRGSN  267 (345)
T ss_dssp             CSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred             cccCCceeEEEecCCCEEEEEeccCC
Confidence               1356799999997 788777644

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.71  E-value=3.5e-15  Score=125.40  Aligned_cols=223  Identities=11%  Similarity=0.112  Sum_probs=163.4

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ..++.+++++.-.+|++|.+.+||. .|++.....|.++|+++.++++|..+.++                 ...+....
T Consensus        92 tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~aI~R~dpkt~evt~f~lp~~~-----------------a~~nlet~  153 (353)
T COG4257          92 TGEVETYPLGSGASPHGIVVGPDGS-AWITDTGLAIGRLDPKTLEVTRFPLPLEH-----------------ADANLETA  153 (353)
T ss_pred             CCceEEEecCCCCCCceEEECCCCC-eeEecCcceeEEecCcccceEEeeccccc-----------------CCCcccce
Confidence            3446799999999999999999999 66655545899999999999998754322                 22223456


Q ss_pred             EEecCCCeEEEEeCCCcE-EEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          102 CFNKTNGDLYIADAYFGL-LKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      .||+ +|+||++.. .|+ -|+|+..+.++.+...    ....|++|++.|||. +|++...                 .
T Consensus       154 vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP----qG~gpyGi~atpdGs-vwyasla-----------------g  209 (353)
T COG4257         154 VFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAP----QGGGPYGICATPDGS-VWYASLA-----------------G  209 (353)
T ss_pred             eeCC-CccEEEeec-cccceecCcccCceeeeccC----CCCCCcceEECCCCc-EEEEecc-----------------c
Confidence            7898 999999864 443 4899988877654322    335789999999999 9999432                 2


Q ss_pred             ceEEEEeCCCCcEEEEeCC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECC
Q 018242          181 GRLMKYDPATKQVTVLLGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSP  255 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~  255 (359)
                      ..|.++|+.++..+.+...   ......|.-++.++ +|++...++++++||....   .-..+.-  ....|+.|.+|.
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~  285 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDR  285 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCc-EEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeecc
Confidence            3588999988766554322   12345667778876 8999999999999985432   2222221  234688899999


Q ss_pred             CCCEEEEEecCCCccccccccCCccceeeecCCccceeee
Q 018242          256 RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIH  295 (359)
Q Consensus       256 ~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  295 (359)
                      .|++|......+.     +..|++....+..++.+.++..
T Consensus       286 ~grVW~sea~aga-----i~rfdpeta~ftv~p~pr~n~g  320 (353)
T COG4257         286 HGRVWLSEADAGA-----IGRFDPETARFTVLPIPRPNSG  320 (353)
T ss_pred             CCcEEeeccccCc-----eeecCcccceEEEecCCCCCCC
Confidence            9999999988776     8889988888888888765543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=4.4e-13  Score=122.81  Aligned_cols=195  Identities=15%  Similarity=0.212  Sum_probs=123.9

Q ss_pred             CCCceEEEccCCCeeEEec-CCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..|..++++|+|+.+|++. ..++|..|+.+ ++++....                  .. .....|.++++++++..+|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~------------------~~-~~~~~p~~i~~~~~g~~l~   95 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA------------------ES-PLPGSPTHISTDHQGRFLF   95 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee------------------ee-cCCCCceEEEECCCCCEEE
Confidence            4799999999999888865 45788878765 33333221                  11 1224588999999667788


Q ss_pred             EEeCCC-cEEEEeCCC-CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          112 IADAYF-GLLKVGPEG-GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       112 v~~~~~-~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      ++.... .|..++.++ +..........  ....|+.++++|+|+++|+++.+                 .+.|..||.+
T Consensus        96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~  156 (330)
T PRK11028         96 SASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLS  156 (330)
T ss_pred             EEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEEC
Confidence            887543 477776653 22111111111  12357889999999989998654                 3456667665


Q ss_pred             C-CcEEE------EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CC------CCCCceEE
Q 018242          190 T-KQVTV------LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LP------GFPDNIKR  253 (359)
Q Consensus       190 ~-~~~~~------~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~------~~p~~i~~  253 (359)
                      + +.+..      .......|++++|+||++++|+++...+.|..|+++... +..+....   .+      ..+.++.+
T Consensus       157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~i~~  235 (330)
T PRK11028        157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECVQTLDMMPADFSDTRWAADIHI  235 (330)
T ss_pred             CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEEEEEecCCCcCCCCccceeEEE
Confidence            4 33321      112346789999999999999999989999999987421 12222211   11      12335889


Q ss_pred             CCCCC-EEEEEecCC
Q 018242          254 SPRGG-FWVGIHSRR  267 (359)
Q Consensus       254 d~~G~-lwv~~~~~~  267 (359)
                      +++|+ +|++....+
T Consensus       236 ~pdg~~lyv~~~~~~  250 (330)
T PRK11028        236 TPDGRHLYACDRTAS  250 (330)
T ss_pred             CCCCCEEEEecCCCC
Confidence            99997 777654433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.66  E-value=5e-14  Score=145.41  Aligned_cols=220  Identities=17%  Similarity=0.228  Sum_probs=148.4

Q ss_pred             CCCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      +..|.+|+++++|+.+|+ +..++.|.++|+.++..+++.........  ...+.  .........|.+++++++++.+|
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~--~~gg~--~~~~~~ln~P~gVa~dp~~g~Ly  698 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSD--YQGGK--KGTSQVLNSPWDVCFEPVNEKVY  698 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCC--CCCCh--hhhHhhcCCCeEEEEecCCCeEE
Confidence            568999999998775555 66778999999988777776532111000  00000  00011235689999999889999


Q ss_pred             EEeCC-CcEEEEeCCCCeEEEEeecC-----C-----CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          112 IADAY-FGLLKVGPEGGLATAVATQS-----E-----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       112 v~~~~-~~i~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      |++.. +.|.+++..++.+..+....     .     ...+..|++|+++++|++|||+|..                 .
T Consensus       699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----------------n  761 (1057)
T PLN02919        699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----------------S  761 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----------------C
Confidence            99865 46999999888765443210     0     1124578999999999889999765                 3


Q ss_pred             ceEEEEeCCCCcEEEEeC----------------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcce
Q 018242          181 GRLMKYDPATKQVTVLLG----------------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI  238 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~----------------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~  238 (359)
                      +.|.++|++++....+..                      .+..|.+++++++|+ +||++..+++|.+|+.++......
T Consensus       762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEE
Confidence            478888887655432211                      124689999999997 899999999999999765422111


Q ss_pred             eE-----ee------cCCCCCCceEECCCCCEEEEEecCCCccccccccCCc
Q 018242          239 EI-----VA------QLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW  279 (359)
Q Consensus       239 ~~-----~~------~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  279 (359)
                      ..     +.      ..-..|.+|++|++|++||+...++.     +.+++.
T Consensus       841 aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~-----Irvid~  887 (1057)
T PLN02919        841 AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL-----IRYLDL  887 (1057)
T ss_pred             eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE-----EEEEEC
Confidence            00     00      00125899999999999999987775     555554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=9.7e-12  Score=108.66  Aligned_cols=252  Identities=15%  Similarity=0.193  Sum_probs=152.4

Q ss_pred             CCCCCCceEEEccCCCeeEEecCC---CEE--EEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSD---GRI--IKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~---~~i--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .....|.-|+++++++.||+....   ++|  +.+|++.++++.+.                  ........|..+++|+
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln------------------~~~~~g~~p~yvsvd~   98 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN------------------RQTLPGSPPCYVSVDE   98 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee------------------ccccCCCCCeEEEECC
Confidence            345699999999999889987654   555  56666656555542                  1122223458899999


Q ss_pred             CCCeEEEEeCCCc-EEEEeCCC-CeEEEE----eecCC----CccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          106 TNGDLYIADAYFG-LLKVGPEG-GLATAV----ATQSE----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       106 ~~g~l~v~~~~~~-i~~~~~~~-~~~~~~----~~~~~----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ++..+|+++...+ |.++-... |.+...    .....    .+....++...++|+|++|++.|.+.+           
T Consensus        99 ~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-----------  167 (346)
T COG2706          99 DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-----------  167 (346)
T ss_pred             CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-----------
Confidence            6667888887655 44443321 433221    11111    112234677889999998999988754           


Q ss_pred             ecCCCceEEEEeCCCCcEEEE----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC--
Q 018242          176 SGDKTGRLMKYDPATKQVTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD--  249 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~--  249 (359)
                            +|+.|+.+.+.+...    .....+|+.|+|.|+++..|+...-+++|.+|..++. .++++.+.....+|.  
T Consensus       168 ------ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         168 ------RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDF  240 (346)
T ss_pred             ------eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcccc
Confidence                  677777666666543    2456789999999999999999999999999988754 333443332222222  


Q ss_pred             -------ceEECCCCCEEEEEecCCCccccccccCCcc-cee--eecCCccceeeeeecccccCcceEEEEECCCCCEEE
Q 018242          250 -------NIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-GNV--LIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLE  319 (359)
Q Consensus       250 -------~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  319 (359)
                             .|.++++|+...++..+..+|+  +...++. |++  +...++..+.|....+....  ..+++.++++..+.
T Consensus       241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~--~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g--~~Liaa~q~sd~i~  316 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYASNRGHDSIA--VFSVDPDGGKLELVGITPTEGQFPRDFNINPSG--RFLIAANQKSDNIT  316 (346)
T ss_pred             CCCCceeEEEECCCCCEEEEecCCCCeEE--EEEEcCCCCEEEEEEEeccCCcCCccceeCCCC--CEEEEEccCCCcEE
Confidence                   2888999985444545554433  2222343 432  33444444434333333322  35555565555555


Q ss_pred             EEE
Q 018242          320 ILE  322 (359)
Q Consensus       320 ~~~  322 (359)
                      .|.
T Consensus       317 vf~  319 (346)
T COG2706         317 VFE  319 (346)
T ss_pred             EEE
Confidence            554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.57  E-value=8.4e-13  Score=115.78  Aligned_cols=184  Identities=25%  Similarity=0.421  Sum_probs=126.5

Q ss_pred             CCceEEEc-cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~-~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .|.+++++ ++|+ +|++... ++..+|+.+++++.+....               .-......|+.+++++ +|++|++
T Consensus        41 ~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~---------------~~~~~~~~~ND~~vd~-~G~ly~t  102 (246)
T PF08450_consen   41 GPNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLP---------------DGGVPFNRPNDVAVDP-DGNLYVT  102 (246)
T ss_dssp             SEEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEE---------------TTCSCTEEEEEEEE-T-TS-EEEE
T ss_pred             CCceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeecc---------------CCCcccCCCceEEEcC-CCCEEEE
Confidence            39999999 6777 7877774 4666699988777664221               0011335688999999 8999999


Q ss_pred             eCC---------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          114 DAY---------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       114 ~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      +..         ++|++++++ ++++.+..     .+..||+|+++++|++||++++.                 .+.|+
T Consensus       103 ~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----~~~~pNGi~~s~dg~~lyv~ds~-----------------~~~i~  159 (246)
T PF08450_consen  103 DSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----GLGFPNGIAFSPDGKTLYVADSF-----------------NGRIW  159 (246)
T ss_dssp             EECCBCTTCGGSEEEEEEETT-SEEEEEEE-----EESSEEEEEEETTSSEEEEEETT-----------------TTEEE
T ss_pred             ecCCCccccccccceEEECCC-CeEEEEec-----CcccccceEECCcchheeecccc-----------------cceeE
Confidence            753         238999998 77665544     35689999999999989999764                 45788


Q ss_pred             EEeCC--CCcEE---EEe--CCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-CCCCceEEC-
Q 018242          185 KYDPA--TKQVT---VLL--GNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRS-  254 (359)
Q Consensus       185 ~~d~~--~~~~~---~~~--~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d-  254 (359)
                      +++.+  +..+.   .+.  ... ..|.|++++.+|+ ||++....++|.+++.++.    ......++ ..|.++++. 
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~----~~~~i~~p~~~~t~~~fgg  234 (246)
T PF08450_consen  160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGK----LLREIELPVPRPTNCAFGG  234 (246)
T ss_dssp             EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSC----EEEEEE-SSSSEEEEEEES
T ss_pred             EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCcc----EEEEEcCCCCCEEEEEEEC
Confidence            88874  33121   221  222 2489999999997 8999999999999996532    22223333 468889993 


Q ss_pred             CC-CCEEEEEe
Q 018242          255 PR-GGFWVGIH  264 (359)
Q Consensus       255 ~~-G~lwv~~~  264 (359)
                      ++ +.|||++-
T Consensus       235 ~~~~~L~vTta  245 (246)
T PF08450_consen  235 PDGKTLYVTTA  245 (246)
T ss_dssp             TTSSEEEEEEB
T ss_pred             CCCCEEEEEeC
Confidence            44 46999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=2.1e-12  Score=118.78  Aligned_cols=213  Identities=18%  Similarity=0.233  Sum_probs=130.2

Q ss_pred             CCCCceEEEccCCCeeEEecC-CCEEEEEEcCC-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           33 AIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQ-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ...|..++++++|+.+|++.. .+.+..++.+. +..........+.+.  +|.     ........|+.+.++|+++.+
T Consensus        86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~--g~~-----~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS--GPN-----PDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE--ESS-----TTTTSSTCEEEEEE-TTSSEE
T ss_pred             CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC--CCc-----ccccccccceeEEECCCCCEE
Confidence            478999999999998998875 57887777765 322222110000000  000     001122447899999977789


Q ss_pred             EEEeCCC-cEEEEeCCCC--eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          111 YIADAYF-GLLKVGPEGG--LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       111 ~v~~~~~-~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      |+++.+. .|..|+.+..  +++.... ..-.....|.+++++|+|+++|+.+-.               +..-.++.++
T Consensus       159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~---------------s~~v~v~~~~  222 (345)
T PF10282_consen  159 YVPDLGADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNEL---------------SNTVSVFDYD  222 (345)
T ss_dssp             EEEETTTTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETT---------------TTEEEEEEEE
T ss_pred             EEEecCCCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCC---------------CCcEEEEeec
Confidence            9988754 5666666543  3543221 111244679999999999999999432               1122355566


Q ss_pred             CCCCcEEEEe------CC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecCCCCCCceEECCC
Q 018242          188 PATKQVTVLL------GN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLPGFPDNIKRSPR  256 (359)
Q Consensus       188 ~~~~~~~~~~------~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~p~~i~~d~~  256 (359)
                      ..++.++.+.      .+   ...+.+|+++|||++||+++...+.|..|+++..  .+...+.+......|+++++|++
T Consensus       223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence            4456555432      11   1257899999999999999999999999999543  22222222223456999999999


Q ss_pred             CC-EEEEEecCCC
Q 018242          257 GG-FWVGIHSRRK  268 (359)
Q Consensus       257 G~-lwv~~~~~~~  268 (359)
                      |+ ||++...++.
T Consensus       303 g~~l~Va~~~s~~  315 (345)
T PF10282_consen  303 GRYLYVANQDSNT  315 (345)
T ss_dssp             SSEEEEEETTTTE
T ss_pred             CCEEEEEecCCCe
Confidence            97 7777766543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.50  E-value=3.3e-11  Score=111.77  Aligned_cols=181  Identities=18%  Similarity=0.237  Sum_probs=116.2

Q ss_pred             EEEEee-CCCCCCceEEEccCCCeeEEecC------------C-CEEEEEEcCCc--ceEEEeecCCCCCCCCCCccccc
Q 018242           25 VVQYQI-EGAIGPESLAFDALGEGPYTGVS------------D-GRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDH   88 (359)
Q Consensus        25 ~~~~~~-~~~~~p~~i~~~~~G~~l~~~~~------------~-~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~   88 (359)
                      +..+++ +.+..|.+|++|++|+ +|++..            . ++|++++..++  .....                  
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~------------------   64 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS------------------   64 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee------------------
Confidence            344554 4699999999999999 777642            1 37888865322  11000                  


Q ss_pred             ccccccCCcceEEEEecCCCeEEEEeCCCcEEEE-eCCC-----CeEEEEeecCCCc---cccccceEEEeCCCCEEEEE
Q 018242           89 AAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKV-GPEG-----GLATAVATQSEGI---PFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus        89 ~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~-~~~~-----~~~~~~~~~~~~~---~~~~~~~l~~d~~g~~l~v~  159 (359)
                      ..+......|.||++.+ ++ |||+. ...|+++ +.++     ++.+.+.......   ....++++++++||+ ||++
T Consensus        65 ~vfa~~l~~p~Gi~~~~-~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~  140 (367)
T TIGR02604        65 NVFAEELSMVTGLAVAV-GG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFN  140 (367)
T ss_pred             EEeecCCCCccceeEec-CC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEe
Confidence            02223345689999998 77 99986 4468888 4432     1334444433221   245688999999999 9998


Q ss_pred             eCCCc--cccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          160 DSSSQ--FQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       160 d~~~~--~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      +....  +...............+.|+++++++++++.+..+...|+|++++++|+ +|+++.......++.
T Consensus       141 ~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~  211 (367)
T TIGR02604       141 HGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT  211 (367)
T ss_pred             cccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence            76321  1000000000011234689999999988988888889999999999987 788887665555443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.47  E-value=1.3e-13  Score=98.60  Aligned_cols=87  Identities=59%  Similarity=0.990  Sum_probs=71.6

Q ss_pred             ceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242          145 NSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       145 ~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                      |++.++++ |. +|++|++..|.++.+...+.++...|.+++|||.+++.+.+..++..|||+++++|+..++++++...
T Consensus         1 ndldv~~~~g~-vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGT-VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCE-EEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCc
Confidence            57899998 77 99999999999988888888889999999999999999999899999999999999999999999999


Q ss_pred             EEEEEEcCC
Q 018242          224 RILRYWLKT  232 (359)
Q Consensus       224 ~i~~~~~~~  232 (359)
                      +|.+|.+++
T Consensus        80 Ri~rywl~G   88 (89)
T PF03088_consen   80 RILRYWLKG   88 (89)
T ss_dssp             EEEEEESSS
T ss_pred             eEEEEEEeC
Confidence            999999875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.46  E-value=4.7e-11  Score=109.44  Aligned_cols=198  Identities=8%  Similarity=0.032  Sum_probs=124.1

Q ss_pred             CCCceEEEccCCCeeEEecC-CCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..|..++++++|+.+|++.. .+.|..|+.++.. .....                  ........|++++++++++.+|
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~------------------~~~~~~~~~~~~~~~p~g~~l~  141 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI------------------QIIEGLEGCHSANIDPDNRTLW  141 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce------------------eeccCCCcccEeEeCCCCCEEE
Confidence            37899999999998888764 5788888876431 10000                  0011123478999999667788


Q ss_pred             EEeCC-CcEEEEeCCC-CeEEEEe-ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE--E
Q 018242          112 IADAY-FGLLKVGPEG-GLATAVA-TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK--Y  186 (359)
Q Consensus       112 v~~~~-~~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~--~  186 (359)
                      +++.. +.|..++.++ +.+.... ..........|++++++|+|+++|+++..                 .+.|..  +
T Consensus       142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~  204 (330)
T PRK11028        142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQL  204 (330)
T ss_pred             EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEE
Confidence            88765 4588888765 3322100 00011123468899999999999999543                 234544  4


Q ss_pred             eCCCCcEEEEeC------C---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECC
Q 018242          187 DPATKQVTVLLG------N---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSP  255 (359)
Q Consensus       187 d~~~~~~~~~~~------~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~  255 (359)
                      +..+++++.+..      .   ...+.+++++||++++|+++...+.|..|+++.... ..+....  ....|.++.+++
T Consensus       205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~-~~~~~~~~~~~~~p~~~~~~~  283 (330)
T PRK11028        205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGS-VLSFEGHQPTETQPRGFNIDH  283 (330)
T ss_pred             eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCC-eEEEeEEEeccccCCceEECC
Confidence            433444433211      1   123446899999999999988889999999864321 1122222  234689999999


Q ss_pred             CCC-EEEEEecCC
Q 018242          256 RGG-FWVGIHSRR  267 (359)
Q Consensus       256 ~G~-lwv~~~~~~  267 (359)
                      +|+ ||++....+
T Consensus       284 dg~~l~va~~~~~  296 (330)
T PRK11028        284 SGKYLIAAGQKSH  296 (330)
T ss_pred             CCCEEEEEEccCC
Confidence            996 777665443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.36  E-value=4.8e-09  Score=94.09  Aligned_cols=191  Identities=16%  Similarity=0.130  Sum_probs=115.9

Q ss_pred             CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeC
Q 018242           46 EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGP  124 (359)
Q Consensus        46 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~  124 (359)
                      ++++++..++.|..||..+++....                    +. ....+.++++++++..+|++... +.|..++.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~--------------------~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~   60 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRT--------------------FP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDL   60 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEE--------------------EE-CCCCCCceEECCCCCEEEEEECCCCeEEEEEC
Confidence            4345566788999999987643221                    11 12346789999955557776543 45888999


Q ss_pred             CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc
Q 018242          125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN  204 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~  204 (359)
                      .+++.......     ...+..++++++|+.+|++..                 ..+.+..+|.++++..........+.
T Consensus        61 ~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~  118 (300)
T TIGR03866        61 ATGEVIGTLPS-----GPDPELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPE  118 (300)
T ss_pred             CCCcEEEeccC-----CCCccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcc
Confidence            88765432221     123557889999997777732                 23578889987655433333234578


Q ss_pred             eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCC-ccce
Q 018242          205 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP-WIGN  282 (359)
Q Consensus       205 gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~-~~g~  282 (359)
                      +++++|+++.++++......+..|+.....   ..........|..++++++|. +|++....+.     +..++ ..++
T Consensus       119 ~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-----v~i~d~~~~~  190 (300)
T TIGR03866       119 GMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-----VSVIDVATRK  190 (300)
T ss_pred             eEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-----EEEEEcCcce
Confidence            999999999777766555566677754321   111111234577789999997 4455433332     44444 3455


Q ss_pred             eeecC
Q 018242          283 VLIKL  287 (359)
Q Consensus       283 ~~~~~  287 (359)
                      .+..+
T Consensus       191 ~~~~~  195 (300)
T TIGR03866       191 VIKKI  195 (300)
T ss_pred             eeeee
Confidence            54443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=6.9e-10  Score=97.21  Aligned_cols=209  Identities=14%  Similarity=0.214  Sum_probs=131.9

Q ss_pred             CCCceEEEccCCCeeEEecCC-CEEEEEEcCC-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDALGEGPYTGVSD-GRIIKWHQDQ-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..|--+++|++|+.++++... +.|.++-.+. +......+...+.+..     +   .......-++...++|+++.|+
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~-----p---~~rQ~~~h~H~a~~tP~~~~l~  160 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG-----P---HERQESPHVHSANFTPDGRYLV  160 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC-----C---CccccCCccceeeeCCCCCEEE
Confidence            467899999999988888766 4444444332 2222111111111100     0   0000001145677899566788


Q ss_pred             EEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +.+.+ ++|+.|+.+.|+++..... .-.+...|..|+++|+|++.|+..               +.+.+-.|+.+++..
T Consensus       161 v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~---------------EL~stV~v~~y~~~~  224 (346)
T COG2706         161 VPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVN---------------ELNSTVDVLEYNPAV  224 (346)
T ss_pred             EeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEe---------------ccCCEEEEEEEcCCC
Confidence            87764 4688888888876543221 113556899999999999888883               112233477788877


Q ss_pred             CcEEEEeC------C---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEe--ecCCC-CCCceEECCCCC
Q 018242          191 KQVTVLLG------N---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV--AQLPG-FPDNIKRSPRGG  258 (359)
Q Consensus       191 ~~~~~~~~------~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~-~p~~i~~d~~G~  258 (359)
                      ++++.+..      +   ......|.+++||+.||+++...+.|..|.++... +..+.+  ....+ .|++..+++.|+
T Consensus       225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~~teg~~PR~F~i~~~g~  303 (346)
T COG2706         225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGITPTEGQFPRDFNINPSGR  303 (346)
T ss_pred             ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEeccCCcCCccceeCCCCC
Confidence            77776532      1   23345889999999999999999999999987542 222222  22334 499999999999


Q ss_pred             EEEEEecCC
Q 018242          259 FWVGIHSRR  267 (359)
Q Consensus       259 lwv~~~~~~  267 (359)
                      +.++....+
T Consensus       304 ~Liaa~q~s  312 (346)
T COG2706         304 FLIAANQKS  312 (346)
T ss_pred             EEEEEccCC
Confidence            777776544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.27  E-value=2.2e-08  Score=89.75  Aligned_cols=190  Identities=14%  Similarity=0.029  Sum_probs=118.5

Q ss_pred             CCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..|.+++++++|+.+|+ +..++.|..||..+++....                    +. ....+..++++++++.+|+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------------------~~-~~~~~~~~~~~~~g~~l~~   89 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--------------------LP-SGPDPELFALHPNGKILYI   89 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--------------------cc-CCCCccEEEECCCCCEEEE
Confidence            46889999999987765 45668999999887643321                    11 1123567888985566777


Q ss_pred             EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +... +.|..+|..+++......     ....+.+++++|+|+.++++...                 ...+..+|.+++
T Consensus        90 ~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~dg~~l~~~~~~-----------------~~~~~~~d~~~~  147 (300)
T TIGR03866        90 ANEDDNLVTVIDIETRKVLAEIP-----VGVEPEGMAVSPDGKIVVNTSET-----------------TNMAHFIDTKTY  147 (300)
T ss_pred             EcCCCCeEEEEECCCCeEEeEee-----CCCCcceEEECCCCCEEEEEecC-----------------CCeEEEEeCCCC
Confidence            7543 458889988765322111     01246789999999944444211                 123556787766


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----CCCCCCceEECCCCCE-EEEEec
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----LPGFPDNIKRSPRGGF-WVGIHS  265 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~d~~G~l-wv~~~~  265 (359)
                      +..........|..++++++++.++++...++.|..|++...+....-.+..     ....|.+++++++|+. |++...
T Consensus       148 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~  227 (300)
T TIGR03866       148 EIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP  227 (300)
T ss_pred             eEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence            5543222234578899999999888887677899999986542211101110     0113567889999974 665543


Q ss_pred             C
Q 018242          266 R  266 (359)
Q Consensus       266 ~  266 (359)
                      .
T Consensus       228 ~  228 (300)
T TIGR03866       228 A  228 (300)
T ss_pred             C
Confidence            3

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.19  E-value=1.1e-08  Score=94.58  Aligned_cols=290  Identities=14%  Similarity=0.173  Sum_probs=148.4

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +-++..+. .-+.++.+.+||+.+|+...++.|.++|+.+.+...                     ....+..|.+++++
T Consensus        29 ~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---------------------~i~~G~~~~~i~~s   86 (369)
T PF02239_consen   29 VARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---------------------TIKVGGNPRGIAVS   86 (369)
T ss_dssp             EEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---------------------EEE-SSEEEEEEE-
T ss_pred             EEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---------------------EEecCCCcceEEEc
Confidence            34666653 224567889999999999989999999999875321                     12344668999999


Q ss_pred             cCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecC---CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          105 KTNGDLYIADAY-FGLLKVGPEGGLATAVATQS---EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       105 ~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +++..+++++.. +.+..+|.++.+........   ...+...+.+|..++... .|+...                ...
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~l----------------kd~  149 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNL----------------KDT  149 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEE----------------TTT
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEE----------------ccC
Confidence            966678888654 46889998886643322211   111223456777777777 666522                224


Q ss_pred             ceEEEEeCCCCc-EE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC----CCCceEEC
Q 018242          181 GRLMKYDPATKQ-VT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG----FPDNIKRS  254 (359)
Q Consensus       181 g~v~~~d~~~~~-~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d  254 (359)
                      +.|+.+|..... .. ........|.+..++|++++++++....+.|..+|....+.   ....+...    .|..-..+
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~---v~~i~~g~~p~~~~~~~~ph  226 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL---VALIDTGKKPHPGPGANFPH  226 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE---EEEEE-SSSBEETTEEEEEE
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE---EEEeeccccccccccccccC
Confidence            678888865432 21 22334567889999999999999888889999999654322   21222111    11111223


Q ss_pred             CC-CCEEEEEecCCCc---c-ccccc-cCCccceeeecCCccceeeeeecccccCcceEEEEE---CCCCCEEEEEEccC
Q 018242          255 PR-GGFWVGIHSRRKG---I-SKLVL-SFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRI---SEQGNVLEILEEIG  325 (359)
Q Consensus       255 ~~-G~lwv~~~~~~~~---~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~  325 (359)
                      +. |-+|.........   + ...+. ......+..++++.....   +++...++...+..-   +++...+..+....
T Consensus       227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t  303 (369)
T PF02239_consen  227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT  303 (369)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred             CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc---ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence            32 3455433221100   0 00023 223467778777765332   111111110112111   23434444432222


Q ss_pred             Cceeec--------eEEE--EEeCCEEEEecCCCC-eEEEEcCCC
Q 018242          326 RKMWRS--------ISEV--EEKDGNLWIGSVNMP-YAGLYNYSS  359 (359)
Q Consensus       326 g~~~~~--------~~~~--~~~~g~l~ig~~~~~-~l~~~~~~~  359 (359)
                      ......        +.-+  ..++.++|++.++.+ .|.+++..+
T Consensus       304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            111111        1112  234679999999998 999998653

...

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=5.9e-08  Score=90.43  Aligned_cols=193  Identities=16%  Similarity=0.161  Sum_probs=132.8

Q ss_pred             CCCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..|.+++..++|.-+|+.... ..+...+...+....+                    .......|.++++++...++|+
T Consensus        31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~--------------------~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS--------------------LSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             CCCceeEEcCccCEEEEEeecCceeeecccccceeeee--------------------ccCCCccccceeeCCCCCeEEE
Confidence            489999999999556665533 3455554442211111                    0111156889999986777999


Q ss_pred             EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      .+.. +.+..+|..+.+.......     ...|.+++++++++++|+++...               ..+.+..+|..++
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~v-----G~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~  150 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPV-----GLGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATN  150 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeee-----ccCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCC
Confidence            8754 5688898766654433221     12788999999998899997641               2457999999887


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-e-eEeecCCCCCCceEECCCCC-EEEEEecC
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-I-EIVAQLPGFPDNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~p~~i~~d~~G~-lwv~~~~~  266 (359)
                      +..........|.+++++|+|+.+|+++..++.|..++.+...... . .........|.+++++++|+ +|++....
T Consensus       151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             eEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            7655444445689999999999999999999999999965542221 0 00122345689999999997 88877664

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1e-08  Score=95.52  Aligned_cols=190  Identities=19%  Similarity=0.258  Sum_probs=135.0

Q ss_pred             CCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..|.+++..+.|...|+... .+.|..+|..+......                     ......|.+++++++++.+|+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---------------------~~vG~~P~~~~~~~~~~~vYV  132 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---------------------IPVGLGPVGLAVDPDGKYVYV  132 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---------------------eeeccCCceEEECCCCCEEEE
Confidence            78999999999987776654 47899999766543332                     122236899999998889999


Q ss_pred             EeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          113 ADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       113 ~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      ++..   +.+..+|..++++..... . +   ..|.+++++|+|+++|+++..                 .+.|..+|.+
T Consensus       133 ~n~~~~~~~vsvid~~t~~~~~~~~-v-G---~~P~~~a~~p~g~~vyv~~~~-----------------~~~v~vi~~~  190 (381)
T COG3391         133 ANAGNGNNTVSVIDAATNKVTATIP-V-G---NTPTGVAVDPDGNKVYVTNSD-----------------DNTVSVIDTS  190 (381)
T ss_pred             EecccCCceEEEEeCCCCeEEEEEe-c-C---CCcceEEECCCCCeEEEEecC-----------------CCeEEEEeCC
Confidence            9873   358899999887654422 1 1   145789999999999999743                 4578889987


Q ss_pred             CCcEEE-----EeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242          190 TKQVTV-----LLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV  261 (359)
Q Consensus       190 ~~~~~~-----~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv  261 (359)
                      +..+..     .......|.+++++++++.+|+++..+  +.+.+++...........-.... .|.++.++++|. +|+
T Consensus       191 ~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv  269 (381)
T COG3391         191 GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYV  269 (381)
T ss_pred             CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEE
Confidence            655543     123356789999999999999999887  58988886554222111111122 588999999996 555


Q ss_pred             EEecCC
Q 018242          262 GIHSRR  267 (359)
Q Consensus       262 ~~~~~~  267 (359)
                      +....+
T Consensus       270 ~~~~~~  275 (381)
T COG3391         270 ANSQGG  275 (381)
T ss_pred             EecCCC
Confidence            655433

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.13  E-value=6.6e-09  Score=92.87  Aligned_cols=151  Identities=17%  Similarity=0.210  Sum_probs=101.9

Q ss_pred             CCCCCceEEEccCCCeeEEecCC------------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcce
Q 018242           32 GAIGPESLAFDALGEGPYTGVSD------------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL   99 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (359)
                      +.+.|.+..++++|+ +|++++.            |.||++++.+...+.+                     ......|+
T Consensus       109 ~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~---------------------~~~~~~~N  166 (307)
T COG3386         109 PLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL---------------------DDDLTIPN  166 (307)
T ss_pred             CcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEee---------------------cCcEEecC
Confidence            357899999999999 7777654            4688998855422221                     12134588


Q ss_pred             EEEEecCCCeEEEEeCC-CcEEEEeCCC--CeE---EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          100 GLCFNKTNGDLYIADAY-FGLLKVGPEG--GLA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~-~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      ||++++++..+|++++. +.|++++.+.  +..   .....  .......|.++++|.+|+ +|++--            
T Consensus       167 Gla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~--~~~~~G~PDG~~vDadG~-lw~~a~------------  231 (307)
T COG3386         167 GLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD--FDEEPGLPDGMAVDADGN-LWVAAV------------  231 (307)
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE--ccCCCCCCCceEEeCCCC-EEEecc------------
Confidence            99999977799999875 5689987652  211   11111  111235788999999999 997511            


Q ss_pred             eeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEc-cCCCEEEEEecCCC
Q 018242          174 ILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS-EDGNYILLAETTSC  223 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~-~d~~~l~v~~~~~~  223 (359)
                          ...++|.+++|++.....+.-....|..++|. ++.++||++....+
T Consensus       232 ----~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         232 ----WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             ----cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence                11238999999955555554444667788885 66788999987763

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.10  E-value=2.1e-08  Score=91.52  Aligned_cols=172  Identities=17%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC---CCe
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT---NGD  109 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~g~  109 (359)
                      ++.|.+|++.|||+ +|++...|.|++++.++.....+...+ .             ..........|++++++   ++.
T Consensus         1 L~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~~~~v~~~~-~-------------v~~~~~~gllgia~~p~f~~n~~   65 (331)
T PF07995_consen    1 LNNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSLKTPVADLP-E-------------VFADGERGLLGIAFHPDFASNGY   65 (331)
T ss_dssp             ESSEEEEEEETTSC-EEEEETTTEEEEEETTTEECEEEEE-T-T-------------TBTSTTBSEEEEEE-TTCCCC-E
T ss_pred             CCCceEEEEeCCCc-EEEEeCCceEEEEeCCCcCcceecccc-c-------------ccccccCCcccceeccccCCCCE
Confidence            36899999999999 777777999999995554212222111 0             11222345789999983   589


Q ss_pred             EEEEeCC---------CcEEEEeCCCC--eE---EEEeecCCC--ccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          110 LYIADAY---------FGLLKVGPEGG--LA---TAVATQSEG--IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       110 l~v~~~~---------~~i~~~~~~~~--~~---~~~~~~~~~--~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      +|++...         ..|.|+....+  .+   +.+....+.  ...+....|+++|||. ||++.-..... .   ..
T Consensus        66 lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~-~---~~  140 (331)
T PF07995_consen   66 LYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGND-D---NA  140 (331)
T ss_dssp             EEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTG-G---GG
T ss_pred             EEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCc-c---cc
Confidence            9998542         24777766544  22   222221111  2334566799999997 99995332110 0   00


Q ss_pred             eeecCCCceEEEEeCCCC-------------cEEEEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242          174 ILSGDKTGRLMKYDPATK-------------QVTVLLGNLSFPNGVALSEDGNYILLAETTSCR  224 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~  224 (359)
                      .......|+|+++++++.             ..+.+..++..|.+++|+|....||+++.....
T Consensus       141 ~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~  204 (331)
T PF07995_consen  141 QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDG  204 (331)
T ss_dssp             CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSS
T ss_pred             cccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCC
Confidence            001234678999998753             234455677889999999984458998876543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.08  E-value=9e-08  Score=91.08  Aligned_cols=196  Identities=15%  Similarity=0.176  Sum_probs=130.9

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...-.+++.+|||.++.++..+|+|-.||...+ +...                   .+........++.|.. .|+..+
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~v-------------------TFteHts~Vt~v~f~~-~g~~ll  408 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFV-------------------TFTEHTSGVTAVQFTA-RGNVLL  408 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEE-------------------EeccCCCceEEEEEEe-cCCEEE
Confidence            345569999999998889999999999998775 3332                   2334445577899998 777766


Q ss_pred             EeCCC-cEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADAYF-GLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~~~-~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +..-+ .+..+|.+..+ .+.+..    ........+++||.|. |.++-....                =.|+.|+.+|
T Consensus       409 ssSLDGtVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGe-lV~AG~~d~----------------F~IfvWS~qT  467 (893)
T KOG0291|consen  409 SSSLDGTVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGE-LVCAGAQDS----------------FEIFVWSVQT  467 (893)
T ss_pred             EeecCCeEEeeeecccceeeeecC----CCceeeeEEEEcCCCC-EEEeeccce----------------EEEEEEEeec
Confidence            65444 47778876433 222211    1122456789999999 666632211                1589999999


Q ss_pred             CcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCC
Q 018242          191 KQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRK  268 (359)
Q Consensus       191 ~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~  268 (359)
                      |++..+..+-.+| .+++|++++. ++++.+.+.+|..|++-... ++.+.+.- ..-.-++.+.|+|+ |-|++..+. 
T Consensus       468 GqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~-~~vEtl~i-~sdvl~vsfrPdG~elaVaTldgq-  543 (893)
T KOG0291|consen  468 GQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSS-GTVETLEI-RSDVLAVSFRPDGKELAVATLDGQ-  543 (893)
T ss_pred             CeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccC-ceeeeEee-ccceeEEEEcCCCCeEEEEEecce-
Confidence            9887665554444 7899999998 77888899999999975431 12222211 11133578889995 778887654 


Q ss_pred             ccccccccCCc
Q 018242          269 GISKLVLSFPW  279 (359)
Q Consensus       269 ~~~~~~~~~~~  279 (359)
                           +..|+.
T Consensus       544 -----Itf~d~  549 (893)
T KOG0291|consen  544 -----ITFFDI  549 (893)
T ss_pred             -----EEEEEh
Confidence                 555553

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.08  E-value=6.3e-08  Score=83.78  Aligned_cols=202  Identities=12%  Similarity=0.113  Sum_probs=108.9

Q ss_pred             EeeCCC-CCCceEEEccCCCeeE-EecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           28 YQIEGA-IGPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        28 ~~~~~~-~~p~~i~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ..++++ ..+.+|+++|+.+.|| +....+.|+.++.++.-.+.+.                   +. ..+.+-||++..
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-------------------l~-g~~D~EgI~y~g   74 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-------------------LD-GFGDYEGITYLG   74 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------------------S-S-SSEEEEEE-S
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-------------------CC-CCCCceeEEEEC
Confidence            345443 3589999999866577 4556689999998754333332                   11 234577899886


Q ss_pred             CCCeEEEEeC-CCcEEEEeCC--CCeE-----EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          106 TNGDLYIADA-YFGLLKVGPE--GGLA-----TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       106 ~~g~l~v~~~-~~~i~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                       ++.+.+++. .+.|+.++..  +...     +.+.............+|++|+.++++|++.                .
T Consensus        75 -~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k----------------E  137 (248)
T PF06977_consen   75 -NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK----------------E  137 (248)
T ss_dssp             -TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE----------------E
T ss_pred             -CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe----------------C
Confidence             777777764 3457776652  2221     1121111222334578999999988799882                1


Q ss_pred             CCCceEEEEeC--CCCcEEEEe--------CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC--
Q 018242          178 DKTGRLMKYDP--ATKQVTVLL--------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP--  245 (359)
Q Consensus       178 ~~~g~v~~~d~--~~~~~~~~~--------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~--  245 (359)
                      .....|+.++.  ....+....        .....+.+++++|..+.||+....+..|..+|.++.............  
T Consensus       138 ~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl  217 (248)
T PF06977_consen  138 RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL  217 (248)
T ss_dssp             SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred             CCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc
Confidence            12235676664  222222111        123457899999988889999999999999986543211111111011  


Q ss_pred             ----CCCCceEECCCCCEEEEEecC
Q 018242          246 ----GFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       246 ----~~p~~i~~d~~G~lwv~~~~~  266 (359)
                          ..|.||++|++|+|||.+-++
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIvsEpN  242 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIVSEPN  242 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEEETTT
T ss_pred             ccccCCccEEEECCCCCEEEEcCCc
Confidence                248899999999999988653

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.06  E-value=1.6e-07  Score=83.73  Aligned_cols=151  Identities=21%  Similarity=0.244  Sum_probs=98.6

Q ss_pred             ceEEEEecCCCeEEEEeCCC-------------cEEEEeCCCCeEEEEeecCC--CccccccceEEEeCCC-----CEEE
Q 018242           98 PLGLCFNKTNGDLYIADAYF-------------GLLKVGPEGGLATAVATQSE--GIPFRFCNSLDIDQST-----GIIY  157 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~-------------~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~d~~g-----~~l~  157 (359)
                      ..++.+|+ .++|||-|.+.             .|+.+|++++++........  ..+....+++++|...     .++|
T Consensus         3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            45788998 99999998642             48999999988654333211  1245688999999732     3699


Q ss_pred             EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC--------------------CCceEEEcc---CCCE
Q 018242          158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS--------------------FPNGVALSE---DGNY  214 (359)
Q Consensus       158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--------------------~p~gia~~~---d~~~  214 (359)
                      ++|.+                 ..+|.++|..+++...+..+..                    +..|+++++   |+++
T Consensus        82 ItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~  144 (287)
T PF03022_consen   82 ITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRW  144 (287)
T ss_dssp             EEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-E
T ss_pred             EeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccE
Confidence            99876                 2378889988877766543311                    124778865   8889


Q ss_pred             EEEEecCCCEEEEEEcC---CCCCc-------ceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242          215 ILLAETTSCRILRYWLK---TSKAG-------TIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       215 l~v~~~~~~~i~~~~~~---~~~~~-------~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      ||+....+..+++...+   .....       ..+.+.+.++..++++.|++|+||++....
T Consensus       145 LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~  206 (287)
T PF03022_consen  145 LYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQ  206 (287)
T ss_dssp             EEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCC
T ss_pred             EEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCC
Confidence            99999888899998853   22221       122333333446889999999999999763

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.02  E-value=8.1e-08  Score=89.17  Aligned_cols=211  Identities=20%  Similarity=0.230  Sum_probs=124.3

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEE-EcCCc-----ceEEEeecCCCCCCCCCCcccccccccc----cCC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKW-HQDQR-----RWLHFARTSPNRDGCEGAYEYDHAAKEH----ICG   96 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~-d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   96 (359)
                      ++.++++..|++|++.++|  +|++.. ..|+++ +.+..     +.+.+..                 .+..    ..+
T Consensus        65 ~vfa~~l~~p~Gi~~~~~G--lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~-----------------~~~~~~~~~~~  124 (367)
T TIGR02604        65 NVFAEELSMVTGLAVAVGG--VYVATP-PDILFLRDKDGDDKADGEREVLLS-----------------GFGGQINNHHH  124 (367)
T ss_pred             EEeecCCCCccceeEecCC--EEEeCC-CeEEEEeCCCCCCCCCCccEEEEE-----------------ccCCCCCcccc
Confidence            5666678899999999888  666654 468877 43321     1111110                 1111    124


Q ss_pred             cceEEEEecCCCeEEEEeCC--------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEE
Q 018242           97 RPLGLCFNKTNGDLYIADAY--------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGII  156 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l  156 (359)
                      .++++++.+ +|.||++...                    ++++++++++++++.+..     .+..|++++++++|+ +
T Consensus       125 ~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~-l  197 (367)
T TIGR02604       125 SLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGD-V  197 (367)
T ss_pred             cccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCC-E
Confidence            477899999 8999997541                    248999999988776543     356899999999999 9


Q ss_pred             EEEeCCCccccccceeeeeecCCCceEE-----EEeCCCC---cE-------------EE--EeCCCCCCceEEEcc---
Q 018242          157 YFTDSSSQFQRRNHISVILSGDKTGRLM-----KYDPATK---QV-------------TV--LLGNLSFPNGVALSE---  210 (359)
Q Consensus       157 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~-----~~d~~~~---~~-------------~~--~~~~~~~p~gia~~~---  210 (359)
                      |++|.....  ......+......+..+     ..++..+   +.             ..  .......|.|+++..   
T Consensus       198 ~~tdn~~~~--~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~  275 (367)
T TIGR02604       198 FFCDNDDPP--LCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDA  275 (367)
T ss_pred             EEEccCCCc--eeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCc
Confidence            999764211  00000000010001000     0001000   00             00  011224678888873   


Q ss_pred             ----CCCEEEEEecCCCEEEEEEcCCCCC--c-ceeEeec-CC--CCCCceEECCCCCEEEEEecC
Q 018242          211 ----DGNYILLAETTSCRILRYWLKTSKA--G-TIEIVAQ-LP--GFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       211 ----d~~~l~v~~~~~~~i~~~~~~~~~~--~-~~~~~~~-~~--~~p~~i~~d~~G~lwv~~~~~  266 (359)
                          -.+.+++++...+.|+++.++....  . +...+.. ..  ..|.++.+++||.|||+++-.
T Consensus       276 fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~  341 (367)
T TIGR02604       276 LPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYD  341 (367)
T ss_pred             CCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEecc
Confidence                1234899999999999999864321  1 1112222 11  468889999999999999754

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=7.1e-07  Score=81.09  Aligned_cols=236  Identities=13%  Similarity=0.022  Sum_probs=125.1

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICG   96 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (359)
                      .++.+  ..|+++ +++||+.+|++..          .+.|..+|..+.+...--..+..         |   .+ ....
T Consensus        42 ~i~~G--~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---------p---~~-~~~~  105 (352)
T TIGR02658        42 MTDGG--FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---------P---RF-LVGT  105 (352)
T ss_pred             EEEcc--CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---------c---hh-hccC
Confidence            66666  599997 9999999998776          47899999998754422111100         0   00 0123


Q ss_pred             cceEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCcccccc----ceEEEeCCCCEEEEEe---------C
Q 018242           97 RPLGLCFNKTNGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFC----NSLDIDQSTGIIYFTD---------S  161 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~d~~g~~l~v~d---------~  161 (359)
                      .|..+++++++..|||++..  +.+.++|..++++..-... ++-....+    ..+..-.||..+.++.         .
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            46688999966789998754  4688899888775432111 10000000    0011112222122110         0


Q ss_pred             CCcc--------ccccc---eeeeeecCCCceEEEEeCCCCcEEE------EeC----CCCCCce---EEEccCCCEEEE
Q 018242          162 SSQF--------QRRNH---ISVILSGDKTGRLMKYDPATKQVTV------LLG----NLSFPNG---VALSEDGNYILL  217 (359)
Q Consensus       162 ~~~~--------~~~~~---~~~~~~~~~~g~v~~~d~~~~~~~~------~~~----~~~~p~g---ia~~~d~~~l~v  217 (359)
                      ..-+        .+..+   ....+=-+..|.|+.+|..+.....      +..    ....|.|   +++++|++++||
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence            0000        00000   0000000122678888854322221      110    1223444   999999999999


Q ss_pred             Ee---------cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec-CCCccccccccC-Cccceeee
Q 018242          218 AE---------TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS-RRKGISKLVLSF-PWIGNVLI  285 (359)
Q Consensus       218 ~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~-~~~~~~~~~~~~-~~~g~~~~  285 (359)
                      +.         ...+.|+++|....   +.......+..|.++++++||+ +.+++.+ ++.     +.++ ...++.++
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~-----VsViD~~t~k~i~  336 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTG---KRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT-----LYIFDAETGKELS  336 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCC---eEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc-----EEEEECcCCeEEe
Confidence            54         23368999996443   2222223455689999999998 4444443 332     3333 45677777


Q ss_pred             cC
Q 018242          286 KL  287 (359)
Q Consensus       286 ~~  287 (359)
                      ++
T Consensus       337 ~i  338 (352)
T TIGR02658       337 SV  338 (352)
T ss_pred             ee
Confidence            66

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.96  E-value=7.5e-06  Score=71.72  Aligned_cols=203  Identities=19%  Similarity=0.221  Sum_probs=123.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....++.++++++.++++..++.+..|+..+.+....                    ..........+.+.+++..++++
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~l~~~   69 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--------------------LKGHTGPVRDVAASADGTYLASG   69 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE--------------------EecCCcceeEEEECCCCCEEEEE
Confidence            3456899999999788888889999999876532111                    11111223477888844466666


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..++..+++.......    ....+..+.++++++ ++++.                 ...+.|..++..+++.
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~~~~~-----------------~~~~~i~~~~~~~~~~  127 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGR-ILSSS-----------------SRDKTIKVWDVETGKC  127 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCC-EEEEe-----------------cCCCeEEEEECCCcEE
Confidence            6555688888876533221111    112567788999988 66652                 2246788898875544


Q ss_pred             EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccc
Q 018242          194 TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGIS  271 (359)
Q Consensus       194 ~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~  271 (359)
                      .... ........++++++++ ++++...++.|..|++...+.  ...+.........+.++++|+ ++++.. .+.   
T Consensus       128 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~---  200 (289)
T cd00200         128 LTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSS-DGT---  200 (289)
T ss_pred             EEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecC-CCc---
Confidence            3322 2334467889999876 455555578899999764321  122222223456789999885 555554 332   


Q ss_pred             cccccCCc-cceeeecC
Q 018242          272 KLVLSFPW-IGNVLIKL  287 (359)
Q Consensus       272 ~~~~~~~~-~g~~~~~~  287 (359)
                        +..++. .++....+
T Consensus       201 --i~i~d~~~~~~~~~~  215 (289)
T cd00200         201 --IKLWDLSTGKCLGTL  215 (289)
T ss_pred             --EEEEECCCCceecch
Confidence              455543 35555554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=4.2e-07  Score=82.09  Aligned_cols=267  Identities=13%  Similarity=0.139  Sum_probs=152.0

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcC--CcceEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCe--
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD--QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGD--  109 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~--  109 (359)
                      +..++.|.|.-.++.++..++.+..|..+  ++...+                    . .....-| ...+|.+ +|.  
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq--------------------S-~~l~~fPi~~a~f~p-~G~~~  272 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ--------------------S-IHLEKFPIQKAEFAP-NGHSV  272 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhhe--------------------e-eeeccCccceeeecC-CCceE
Confidence            44589999998878888888766655544  342111                    0 1111122 3566777 554  


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      ++.+....-++.||+.+++++.+.. ..+.+...+..+.+++++++|-+.                  +..|.|+.+...
T Consensus       273 i~~s~rrky~ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd~~fia~~------------------G~~G~I~lLhak  333 (514)
T KOG2055|consen  273 IFTSGRRKYLYSYDLETAKVTKLKP-PYGVEEKSMERFEVSHDSNFIAIA------------------GNNGHIHLLHAK  333 (514)
T ss_pred             EEecccceEEEEeeccccccccccC-CCCcccchhheeEecCCCCeEEEc------------------ccCceEEeehhh
Confidence            4444433458899999998876533 334445577888999999944333                  345778888877


Q ss_pred             CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC-CCCceEECCCCCEEEEEecCCC
Q 018242          190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      |+++..-..-.....+++|+.|++.||+++. .+.||+|++..+  .....|.+-++ .-..++.+.+|.++++....+-
T Consensus       334 T~eli~s~KieG~v~~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi  410 (514)
T KOG2055|consen  334 TKELITSFKIEGVVSDFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI  410 (514)
T ss_pred             hhhhhheeeeccEEeeEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence            7654321111123478899999997777764 469999998654  33344444222 1234788888985554444442


Q ss_pred             ccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCC----------------------EEEEEEccCC
Q 018242          269 GISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGN----------------------VLEILEEIGR  326 (359)
Q Consensus       269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------------------~~~~~~~~~g  326 (359)
                           +.+|+.+.-....-|-|...+.++...     ..-+.|++++.                      ++..|.. .+
T Consensus       411 -----VNIYd~~s~~~s~~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-~n  479 (514)
T KOG2055|consen  411 -----VNIYDGNSCFASTNPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-SN  479 (514)
T ss_pred             -----EEEeccchhhccCCCCchhhhhhhhee-----eeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC-CC
Confidence                 555664444444444444433333322     11223333332                      2222222 23


Q ss_pred             ceeeceEEEEE--eCCEEEEecCCCCeEEEEcC
Q 018242          327 KMWRSISEVEE--KDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       327 ~~~~~~~~~~~--~~g~l~ig~~~~~~l~~~~~  357 (359)
                      .++.-++.+..  .+|.+=+|+- ..++.++++
T Consensus       480 ~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~kL  511 (514)
T KOG2055|consen  480 TKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFKL  511 (514)
T ss_pred             CcccceEEEEecCCCceEEeecC-CCceeeEee
Confidence            33445555544  3678888875 677777765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.95  E-value=3.1e-06  Score=76.94  Aligned_cols=113  Identities=12%  Similarity=0.007  Sum_probs=76.7

Q ss_pred             CCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC----
Q 018242           45 GEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA----  115 (359)
Q Consensus        45 G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~----  115 (359)
                      +..+|+....     ++|+.+|.++.++.                     .....+..|+++ +++++..+|++..    
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~---------------------g~i~~G~~P~~~-~spDg~~lyva~~~~~R   69 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDGEAGRVL---------------------GMTDGGFLPNPV-VASDGSFFAHASTVYSR   69 (352)
T ss_pred             CCEEEEECCcccccCceEEEEECCCCEEE---------------------EEEEccCCCcee-ECCCCCEEEEEeccccc
Confidence            3335554443     78999999887433                     222344678886 9998889999976    


Q ss_pred             -----C-CcEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          116 -----Y-FGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       116 -----~-~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                           . +.|..+|..+.+...-....+.   .-...++.+++++||+++||++..                ....|..+
T Consensus        70 ~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----------------p~~~V~Vv  133 (352)
T TIGR02658        70 IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----------------PSPAVGVV  133 (352)
T ss_pred             cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC----------------CCCEEEEE
Confidence                 2 3488999998876432221111   113466789999999999999532                24578999


Q ss_pred             eCCCCcEEE
Q 018242          187 DPATKQVTV  195 (359)
Q Consensus       187 d~~~~~~~~  195 (359)
                      |..++++..
T Consensus       134 D~~~~kvv~  142 (352)
T TIGR02658       134 DLEGKAFVR  142 (352)
T ss_pred             ECCCCcEEE
Confidence            998876653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.94  E-value=2.2e-06  Score=79.37  Aligned_cols=196  Identities=14%  Similarity=0.134  Sum_probs=114.3

Q ss_pred             CCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCeEEEEeCCCcEEEE
Q 018242           45 GEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGDLYIADAYFGLLKV  122 (359)
Q Consensus        45 G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~l~v~~~~~~i~~~  122 (359)
                      ++++++ ....+.|..+|..+.+...                    .+.. ...+ .++.+++++..+|+++..+.|.++
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~--------------------~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi   63 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVA--------------------RIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVI   63 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEE--------------------EEE--STTEEEEEE-TT-SSEEEEEETTSEEEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEE--------------------EEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEE
Confidence            344554 4456899999998864332                    1222 2334 456788866779999866679999


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CC--
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GN--  199 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~--  199 (359)
                      |+.++++......     ...+.++++++||+++|+++.                 ..+.+..+|.++.+..... ..  
T Consensus        64 D~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~  121 (369)
T PF02239_consen   64 DLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGM  121 (369)
T ss_dssp             ETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE
T ss_pred             ECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccc
Confidence            9998875332221     236789999999998888843                 2457889998876544322 11  


Q ss_pred             ---C--CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE-EEecCCCccccc
Q 018242          200 ---L--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSRRKGISKL  273 (359)
Q Consensus       200 ---~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv-~~~~~~~~~~~~  273 (359)
                         .  ..+.+|..++.+...+++..+.+.|+..|..+.+.. .....+...+|.+..+|++|++++ +.+....     
T Consensus       122 ~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-----  195 (369)
T PF02239_consen  122 PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-----  195 (369)
T ss_dssp             -TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-----
T ss_pred             cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceeeecccccccccccCcccceeeecccccce-----
Confidence               1  123467667777756667777899999987654221 112233456789999999998655 5554442     


Q ss_pred             ccc-CCccceeeecCCc
Q 018242          274 VLS-FPWIGNVLIKLPI  289 (359)
Q Consensus       274 ~~~-~~~~g~~~~~~~~  289 (359)
                      +.. ...++++...++.
T Consensus       196 i~viD~~~~k~v~~i~~  212 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDT  212 (369)
T ss_dssp             EEEEETTTTEEEEEEE-
T ss_pred             eEEEeeccceEEEEeec
Confidence            333 3445555554433

...

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.94  E-value=3.9e-08  Score=91.21  Aligned_cols=146  Identities=19%  Similarity=0.227  Sum_probs=92.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -..+.+|..|+ +|+++.+ ++++||..+++..+...+         |          .......+..|. .++|||++.
T Consensus       167 V~aLv~D~~g~-lWvgT~d-GL~~fd~~~gkalql~s~---------~----------~dk~I~al~~d~-qg~LWVGTd  224 (671)
T COG3292         167 VVALVFDANGR-LWVGTPD-GLSYFDAGRGKALQLASP---------P----------LDKAINALIADV-QGRLWVGTD  224 (671)
T ss_pred             ceeeeeeccCc-EEEecCC-cceEEccccceEEEcCCC---------c----------chhhHHHHHHHh-cCcEEEEec
Confidence            34788888998 9999996 599999998755443211         0          001123455666 899999984


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                       .|+++.+.++.+..-.   ....+...+..+..|.+|+ +||+..                   .+++++....+.+..
T Consensus       225 -qGv~~~e~~G~~~sn~---~~~lp~~~I~ll~qD~qG~-lWiGTe-------------------nGl~r~~l~rq~Lq~  280 (671)
T COG3292         225 -QGVYLQEAEGWRASNW---GPMLPSGNILLLVQDAQGE-LWIGTE-------------------NGLWRTRLPRQGLQI  280 (671)
T ss_pred             -cceEEEchhhcccccc---CCCCcchheeeeecccCCC-EEEeec-------------------ccceeEecCCCCccc
Confidence             5899998887443222   2334556677788999999 999932                   134443333222222


Q ss_pred             E----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          196 L----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       196 ~----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      .    ..+....+++..+.||+ ||+..  .+++++|..
T Consensus       281 ~~~~~~l~~S~vnsL~~D~dGs-LWv~t--~~giv~~~~  316 (671)
T COG3292         281 PLSKMHLGVSTVNSLWLDTDGS-LWVGT--YGGIVRYLT  316 (671)
T ss_pred             cccccCCccccccceeeccCCC-Eeeec--cCceEEEec
Confidence            1    12334557888888886 66653  356777764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=1.8e-06  Score=82.36  Aligned_cols=183  Identities=14%  Similarity=0.121  Sum_probs=109.1

Q ss_pred             eEEEccCCCee-EEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           38 SLAFDALGEGP-YTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        38 ~i~~~~~G~~l-~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...++|||+.+ |++..+  ..|+.+|..+++.+.+.                  ...   +......++|++..|+++.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------------------~~~---g~~~~~~wSPDG~~La~~~  280 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------------------SFP---GINGAPRFSPDGKKLALVL  280 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec------------------CCC---CCcCCeeECCCCCEEEEEE
Confidence            67899999744 444433  46999999877544332                  111   1122467888555576653


Q ss_pred             CCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 AYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ..+   .|++++.++++.+.+... .    .......++|||++|+++...               .....||++|.+++
T Consensus       281 ~~~g~~~Iy~~dl~tg~~~~lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g  340 (448)
T PRK04792        281 SKDGQPEIYVVDIATKALTRITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASG  340 (448)
T ss_pred             eCCCCeEEEEEECCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence            322   499999998877654321 1    123456899999977766221               11236999999887


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      +.+.+........+.+++|||+.++++....+  .|++++++++.   .+.+.. ........++++|+ |+++...
T Consensus       341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~-~~~d~~ps~spdG~~I~~~~~~  413 (448)
T PRK04792        341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA---MQVLTS-TRLDESPSVAPNGTMVIYSTTY  413 (448)
T ss_pred             CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---eEEccC-CCCCCCceECCCCCEEEEEEec
Confidence            77655322223345689999998888765443  67778876542   222221 11122346888886 4444443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.91  E-value=2.6e-06  Score=74.67  Aligned_cols=185  Identities=18%  Similarity=0.184  Sum_probs=116.7

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-  115 (359)
                      ..+.+.++++.++++..++.|..|+..+.+...                    .+.........+.+++ +++++++.. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--------------------~~~~~~~~i~~~~~~~-~~~~~~~~~~  113 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVR--------------------TLTGHTSYVSSVAFSP-DGRILSSSSR  113 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--------------------EEeccCCcEEEEEEcC-CCCEEEEecC
Confidence            388899999778888889999999988642111                    1112223456788888 566666655 


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.+..++..+++.......    ....+..+.++++++ ++++.                 ...+.|..+|..+++...
T Consensus       114 ~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~l~~~-----------------~~~~~i~i~d~~~~~~~~  171 (289)
T cd00200         114 DKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGT-FVASS-----------------SQDGTIKLWDLRTGKCVA  171 (289)
T ss_pred             CCeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCC-EEEEE-----------------cCCCcEEEEEccccccce
Confidence            55688899886554332221    123567889999988 55542                 124568888886544332


Q ss_pred             -EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          196 -LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       196 -~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                       +.........++++++++.++++.. ++.|..|++.....  ...+.........+.+++++.++++....+
T Consensus       172 ~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         172 TLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             eEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence             3333335678999999876666654 78899999754311  111212223356688888887777665333

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.90  E-value=3.5e-07  Score=85.63  Aligned_cols=179  Identities=13%  Similarity=0.146  Sum_probs=107.8

Q ss_pred             EeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           28 YQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ..+.++..|++|++.|||+ +|++.. .|+|+++++.+...+.+...+            .+ ......+.+.||+++|+
T Consensus        24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~------------~v-~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLP------------EI-VNDAQHNGLLGLALHPD   89 (454)
T ss_pred             EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCC------------ce-eccCCCCceeeEEECCC
Confidence            3445699999999999998 777776 599999987665332221110            00 00112355789999863


Q ss_pred             ------CCeEEEEeC----------CCcEEEEeCCC--Ce---EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcc
Q 018242          107 ------NGDLYIADA----------YFGLLKVGPEG--GL---ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQF  165 (359)
Q Consensus       107 ------~g~l~v~~~----------~~~i~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~  165 (359)
                            ++.||++..          ...|.|+..+.  ..   .+.+....+....+.-..|+++|||. |||+.-....
T Consensus        90 F~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~  168 (454)
T TIGR03606        90 FMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGR  168 (454)
T ss_pred             ccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCC
Confidence                  457888741          23587876542  11   12232222222234556799999999 9998433210


Q ss_pred             c------ccccee------ee---eecCCCceEEEEeCCCC-----------cEEEEeCCCCCCceEEEccCCCEEEEEe
Q 018242          166 Q------RRNHIS------VI---LSGDKTGRLMKYDPATK-----------QVTVLLGNLSFPNGVALSEDGNYILLAE  219 (359)
Q Consensus       166 ~------~~~~~~------~~---~~~~~~g~v~~~d~~~~-----------~~~~~~~~~~~p~gia~~~d~~~l~v~~  219 (359)
                      .      ......      ..   ......|+|+|+++++.           ..+.+..+...|.+++|+|+++ ||+++
T Consensus       169 ~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e  247 (454)
T TIGR03606       169 NQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASE  247 (454)
T ss_pred             CCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEe
Confidence            0      000000      00   11235689999999852           1234556778899999999765 89988


Q ss_pred             cCC
Q 018242          220 TTS  222 (359)
Q Consensus       220 ~~~  222 (359)
                      ...
T Consensus       248 ~Gp  250 (454)
T TIGR03606       248 QGP  250 (454)
T ss_pred             cCC
Confidence            665

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=2.7e-06  Score=80.78  Aligned_cols=183  Identities=13%  Similarity=0.108  Sum_probs=107.5

Q ss_pred             eEEEccCCCeeEE-ecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           38 SLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        38 ~i~~~~~G~~l~~-~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      +..++|||+.++. +..  ...|+.+|..+++...+.                     ...+......++|++..|+++.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---------------------~~~g~~~~~~~SPDG~~la~~~  258 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---------------------NFKGSNSAPAWSPDGRTLAVAL  258 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---------------------cCCCCccceEECCCCCEEEEEE
Confidence            6789999985544 332  246999999877544332                     1111223567888555666543


Q ss_pred             CCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 AYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ..+   .|+.++.+++..+.+.. ..    .......++|||++|+++...               .....||.++.+++
T Consensus       259 ~~~g~~~Iy~~d~~~~~~~~lt~-~~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g  318 (427)
T PRK02889        259 SRDGNSQIYTVNADGSGLRRLTQ-SS----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGG  318 (427)
T ss_pred             ccCCCceEEEEECCCCCcEECCC-CC----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCC
Confidence            322   48889988776554422 11    122346899999977665211               11236888887766


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      ..+.+..........+++|||+.++++...+  ..|+++++.+..   .+.+.. ........++++|+ |+++...
T Consensus       319 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~-~~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        319 AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ---VTALTD-TTRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC---eEEccC-CCCccCceECCCCCEEEEEEec
Confidence            6655432222234578999999877665443  368888876542   222222 12235678889997 4444443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.88  E-value=1.7e-06  Score=73.55  Aligned_cols=186  Identities=11%  Similarity=0.137  Sum_probs=123.1

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++..+||...+.+..++.++.||..+++-+.                    .+........++++++++..+.-+.
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~--------------------~f~GH~~dVlsva~s~dn~qivSGS  124 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR--------------------RFVGHTKDVLSVAFSTDNRQIVSGS  124 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecCCcEEE--------------------EEEecCCceEEEEecCCCceeecCC
Confidence            34578889999977788999999999998863221                    3334445578999999555554444


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC-CEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST-GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g-~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+.|..++..+...-.+..   ......++.+.+.|+. + .++...                +.+..|-.+|.++-++
T Consensus       125 rDkTiklwnt~g~ck~t~~~---~~~~~WVscvrfsP~~~~-p~Ivs~----------------s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHE---DSHREWVSCVRFSPNESN-PIIVSA----------------SWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CcceeeeeeecccEEEEEec---CCCcCcEEEEEEcCCCCC-cEEEEc----------------cCCceEEEEccCCcch
Confidence            44568888888765433332   1114578889999985 5 666532                3456788888876555


Q ss_pred             EE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242          194 TV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       194 ~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      +. +..+....+.++++|||. +..+...++.++.||++..+.  ...+ +.....+.++|.| .++|.+.--
T Consensus       185 ~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl-~a~~~v~sl~fsp-nrywL~~at  252 (315)
T KOG0279|consen  185 RTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSL-EAFDIVNSLCFSP-NRYWLCAAT  252 (315)
T ss_pred             hhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEec-cCCCeEeeEEecC-CceeEeecc
Confidence            43 233344568899999998 777788889999999876422  1111 1112246689987 557775543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=3.4e-06  Score=80.30  Aligned_cols=182  Identities=13%  Similarity=0.091  Sum_probs=107.8

Q ss_pred             eEEEccCCCeeE-EecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           38 SLAFDALGEGPY-TGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        38 ~i~~~~~G~~l~-~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ++.++|||+.++ ++..  ...|+++|..+++.+.+.                     ...+......+++++..++++.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---------------------~~~g~~~~~~~SpDG~~l~~~~  266 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---------------------SFRGINGAPSFSPDGRRLALTL  266 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---------------------cCCCCccCceECCCCCEEEEEE
Confidence            567889997444 4432  246999999877544332                     1111123467888555666553


Q ss_pred             C-CC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 A-YF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      . .+  .|+.++.++++.+.+... .    .......++|||++++++...               .....||.++.+++
T Consensus       267 s~~g~~~Iy~~d~~~g~~~~lt~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g  326 (433)
T PRK04922        267 SRDGNPEIYVMDLGSRQLTRLTNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGG  326 (433)
T ss_pred             eCCCCceEEEEECCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence            2 22  499999998876654321 1    122357899999967666211               11235999998777


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  264 (359)
                      +.+.+..........+++|||+.++++...+  ..|+.+++.+..   .+.+.. ........++++|+ ++++..
T Consensus       327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~-~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        327 SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTP-GSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eEECCC-CCCCCCceECCCCCEEEEEEe
Confidence            7665433223344689999999887765443  368888875542   222222 11234568889997 444443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.83  E-value=6e-08  Score=89.98  Aligned_cols=139  Identities=20%  Similarity=0.273  Sum_probs=85.3

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccc-cccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPF-RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ...+.+|. .|++||++ .+|+++|+..+++.-++...    +. ..++.++.|-+|+ +||++                
T Consensus       167 V~aLv~D~-~g~lWvgT-~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~-LWVGT----------------  223 (671)
T COG3292         167 VVALVFDA-NGRLWVGT-PDGLSYFDAGRGKALQLASP----PLDKAINALIADVQGR-LWVGT----------------  223 (671)
T ss_pred             ceeeeeec-cCcEEEec-CCcceEEccccceEEEcCCC----cchhhHHHHHHHhcCc-EEEEe----------------
Confidence            34678888 99999997 46899999998886554331    22 4677889999999 99993                


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCCCCCCce--EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC--CCCceE
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGNLSFPNG--VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FPDNIK  252 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~g--ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~p~~i~  252 (359)
                         +.+|++.++.+.++.-  .+...|.+  ..+-.|.+.-+|..+.+ +++++......+. ........+  ....+.
T Consensus       224 ---dqGv~~~e~~G~~~sn--~~~~lp~~~I~ll~qD~qG~lWiGTen-Gl~r~~l~rq~Lq-~~~~~~~l~~S~vnsL~  296 (671)
T COG3292         224 ---DQGVYLQEAEGWRASN--WGPMLPSGNILLLVQDAQGELWIGTEN-GLWRTRLPRQGLQ-IPLSKMHLGVSTVNSLW  296 (671)
T ss_pred             ---ccceEEEchhhccccc--cCCCCcchheeeeecccCCCEEEeecc-cceeEecCCCCcc-ccccccCCcccccccee
Confidence               2369999887633322  12223332  22223433345555553 5777665432211 000111111  235688


Q ss_pred             ECCCCCEEEEEecC
Q 018242          253 RSPRGGFWVGIHSR  266 (359)
Q Consensus       253 ~d~~G~lwv~~~~~  266 (359)
                      .|.+|++|+++...
T Consensus       297 ~D~dGsLWv~t~~g  310 (671)
T COG3292         297 LDTDGSLWVGTYGG  310 (671)
T ss_pred             eccCCCEeeeccCc
Confidence            89999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.3e-05  Score=67.84  Aligned_cols=207  Identities=15%  Similarity=0.104  Sum_probs=125.6

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...+.+|.++++|..+.+++.+..|..||-..+.....-                  .....+  +.-++|......+..
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti------------------~skkyG--~~~~~Fth~~~~~i~   73 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI------------------NSKKYG--VDLACFTHHSNTVIH   73 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe------------------eccccc--ccEEEEecCCceEEE
Confidence            346789999999998888888889999998766432211                  111111  233445443555555


Q ss_pred             EeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +..  ...|..++..+++-.++.   .+ ....++.|.+.|-+. .+++.                 +.+..|..||...
T Consensus        74 sStk~d~tIryLsl~dNkylRYF---~G-H~~~V~sL~~sP~~d-~FlS~-----------------S~D~tvrLWDlR~  131 (311)
T KOG1446|consen   74 SSTKEDDTIRYLSLHDNKYLRYF---PG-HKKRVNSLSVSPKDD-TFLSS-----------------SLDKTVRLWDLRV  131 (311)
T ss_pred             ccCCCCCceEEEEeecCceEEEc---CC-CCceEEEEEecCCCC-eEEec-----------------ccCCeEEeeEecC
Confidence            443  234777777766543322   11 224678999999998 88883                 3355788899875


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CC--CCCCceEECCCCC-EEEEEecC
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP--GFPDNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~p~~i~~d~~G~-lwv~~~~~  266 (359)
                      .+..-+. ....+...|++|+|- ++.+...++.|..||+..=..+..+.+.- .+  ..=.+|.++++|+ |.+++..+
T Consensus       132 ~~cqg~l-~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s  209 (311)
T KOG1446|consen  132 KKCQGLL-NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS  209 (311)
T ss_pred             CCCceEE-ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence            5544332 234556789999984 56666666699999985322233333321 11  1124589999997 55566543


Q ss_pred             CCccccccccC-CccceeeecCCc
Q 018242          267 RKGISKLVLSF-PWIGNVLIKLPI  289 (359)
Q Consensus       267 ~~~~~~~~~~~-~~~g~~~~~~~~  289 (359)
                      .      +... ..+|.+...+..
T Consensus       210 ~------~~~lDAf~G~~~~tfs~  227 (311)
T KOG1446|consen  210 F------IYLLDAFDGTVKSTFSG  227 (311)
T ss_pred             c------EEEEEccCCcEeeeEee
Confidence            2      3333 346666555443

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.83  E-value=1.7e-06  Score=77.24  Aligned_cols=197  Identities=20%  Similarity=0.235  Sum_probs=114.6

Q ss_pred             CceEEEccCCCeeEEecCC------------CEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           36 PESLAFDALGEGPYTGVSD------------GRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~------------~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      ..++.+|+.|++|++++..            -+|+.||+.+++. +++..+.               ...........++
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~---------------~~~~~~s~lndl~   67 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPP---------------DIAPPDSFLNDLV   67 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--C---------------CCS-TCGGEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECCh---------------HHcccccccceEE
Confidence            4578899999955566542            3899999999864 3443221               1111223345788


Q ss_pred             EecCC-----CeEEEEeCC-CcEEEEeCCCCeEEEEeecC-C-----------Cccc---cccceEEEeC---CCCEEEE
Q 018242          103 FNKTN-----GDLYIADAY-FGLLKVGPEGGLATAVATQS-E-----------GIPF---RFCNSLDIDQ---STGIIYF  158 (359)
Q Consensus       103 ~~~~~-----g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~-~-----------~~~~---~~~~~l~~d~---~g~~l~v  158 (359)
                      +|..+     +.+|+++.. .+|+.+|..+++..++.... .           +..+   ..+.+++.++   +|+.||+
T Consensus        68 VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   68 VDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             EECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             EEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            88633     579999876 47999999998865544321 1           0011   1244555544   6777888


Q ss_pred             EeCCCccccccceeeeeecCCCceEEEEeCCC-------------CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242          159 TDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-------------KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI  225 (359)
Q Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-------------~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i  225 (359)
                      .-..+                 ..+|++..+-             ..++.+-.......|++++++|. ||+++...+.|
T Consensus       148 ~~lss-----------------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI  209 (287)
T PF03022_consen  148 HPLSS-----------------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAI  209 (287)
T ss_dssp             EETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEE
T ss_pred             EeCCC-----------------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeE
Confidence            74331                 1355443210             01222211123457999999775 99999999999


Q ss_pred             EEEEcCCCCC-cceeEeec-CC--CCCCceEECC--CCCEEEEEec
Q 018242          226 LRYWLKTSKA-GTIEIVAQ-LP--GFPDNIKRSP--RGGFWVGIHS  265 (359)
Q Consensus       226 ~~~~~~~~~~-~~~~~~~~-~~--~~p~~i~~d~--~G~lwv~~~~  265 (359)
                      .+|+.+.+.. ...+.+.. ..  -.|+++.+++  +|.||+.+..
T Consensus       210 ~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  210 GCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             EEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence            9999765422 23444443 22  4699999999  9999998865

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=4.6e-06  Score=79.15  Aligned_cols=180  Identities=12%  Similarity=0.082  Sum_probs=108.3

Q ss_pred             ceEEEccCCCeeE-Eec--CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           37 ESLAFDALGEGPY-TGV--SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        37 ~~i~~~~~G~~l~-~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..+.++|||+.+. ++.  ....|+.++..+++.+.+.                  ...   +......++|++..|+++
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------------------~~~---~~~~~~~~SPDG~~La~~  260 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------------------SFP---RHNGAPAFSPDGSKLAFA  260 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc------------------CCC---CCcCCeEECCCCCEEEEE
Confidence            3788999997443 433  2357899998876443321                  111   112246789955566665


Q ss_pred             eCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ....   .|+.+|.++++.+.+... .    .......++|||++|+++...               ...-.||.++.++
T Consensus       261 ~~~~g~~~I~~~d~~tg~~~~lt~~-~----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~  320 (429)
T PRK03629        261 LSKTGSLNLYVMDLASGQIRQVTDG-R----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNING  320 (429)
T ss_pred             EcCCCCcEEEEEECCCCCEEEccCC-C----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCC
Confidence            3322   499999998877655321 1    134567899999977555211               1123699999987


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  261 (359)
                      +..+.+..........+++|||+.++++...+  ..|+.+++++..   .+.+.. ...-....+++||+..+
T Consensus       321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~-~~~~~~p~~SpDG~~i~  389 (429)
T PRK03629        321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTD-TFLDETPSIAPNGTMVI  389 (429)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEeCC-CCCCCCceECCCCCEEE
Confidence            77665543333345678999999877765443  458888876542   222222 11123467889997444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.80  E-value=8.2e-07  Score=76.46  Aligned_cols=207  Identities=19%  Similarity=0.143  Sum_probs=106.9

Q ss_pred             CCCchhHHHHHHHHHHHhh----hcCC-------CEEEEeeCCCCCCceEEEccCCCeeEEecCC---CEEEEEEcCCcc
Q 018242            1 MNSSLSFIAKSIVIFLFIN----SSTQ-------GVVQYQIEGAIGPESLAFDALGEGPYTGVSD---GRIIKWHQDQRR   66 (359)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~   66 (359)
                      ||.++.+++++++++....    +.++       .+.+++.+.-..-+|+.+..+|. +|-++..   ..|.++|+.+++
T Consensus         1 ~~~~l~~~~~l~la~~~~~~~~~~~~~~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~   79 (264)
T PF05096_consen    1 MKLSLRTLALLALAAARAPAAPVSAAPAPVYSYEVVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGK   79 (264)
T ss_dssp             -----------------------------EEEEEEEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSS
T ss_pred             CcccchhhHHHHHHhccccccccccCCCceeeeEEEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCc
Confidence            7777777666555543221    1111       13366777777788999988888 8876643   488999999987


Q ss_pred             eEEEeecCCCCCC--CCCCcccccccc--------------------cccCCcceEEEEecCCCeEEEEeCCCcEEEEeC
Q 018242           67 WLHFARTSPNRDG--CEGAYEYDHAAK--------------------EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP  124 (359)
Q Consensus        67 ~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~  124 (359)
                      .......++..++  +.--. .++..+                    -...++..||+.+  +..||+++....|+.+|+
T Consensus        80 ~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~d--g~~Li~SDGS~~L~~~dP  156 (264)
T PF05096_consen   80 VLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTSD--GKRLIMSDGSSRLYFLDP  156 (264)
T ss_dssp             EEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEEC--SSCEEEE-SSSEEEEE-T
T ss_pred             EEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEecCCcceEEEcC--CCEEEEECCccceEEECC
Confidence            6654444333221  00000 000000                    0112345677744  678999887778999999


Q ss_pred             CCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC-----
Q 018242          125 EGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG-----  198 (359)
Q Consensus       125 ~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----  198 (359)
                      ++-+...... ...+.+....|.|-.- +|. ||.-...                 ...|.++||++|++.....     
T Consensus       157 ~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~  217 (264)
T PF05096_consen  157 ETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLR  217 (264)
T ss_dssp             TT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHH
T ss_pred             cccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhh
Confidence            8754432222 2344566677787664 676 8887543                 2379999999999875421     


Q ss_pred             ------C-----CCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          199 ------N-----LSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       199 ------~-----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                            .     ..--||||++++.+.+|+++-.=..++.+.+
T Consensus       218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             HHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             hcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence                  0     1124899999999999999876667776654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=1.4e-05  Score=76.22  Aligned_cols=143  Identities=14%  Similarity=0.072  Sum_probs=86.6

Q ss_pred             ceEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           98 PLGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      .....++|++..|......   ..|+.++..+++.+.+.. ..    .......++|||++|.++...            
T Consensus       204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~----g~~~~~~~SPDG~~la~~~~~------------  266 (435)
T PRK05137        204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FP----GMTFAPRFSPDGRKVVMSLSQ------------  266 (435)
T ss_pred             eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CC----CcccCcEECCCCCEEEEEEec------------
Confidence            3467788855555554322   359999999887655432 11    123457899999977666221            


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIK  252 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  252 (359)
                         .....||.+|.+++..+.+..........+++|||+.++++....  ..|+++++++...   +.+....+......
T Consensus       267 ---~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~lt~~~~~~~~~~  340 (435)
T PRK05137        267 ---GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP---RRISFGGGRYSTPV  340 (435)
T ss_pred             ---CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe---EEeecCCCcccCeE
Confidence               123469999998887766543333345678999999777665332  4789888765322   22222122234467


Q ss_pred             ECCCCC-EEEEE
Q 018242          253 RSPRGG-FWVGI  263 (359)
Q Consensus       253 ~d~~G~-lwv~~  263 (359)
                      ++++|+ |++..
T Consensus       341 ~SpdG~~ia~~~  352 (435)
T PRK05137        341 WSPRGDLIAFTK  352 (435)
T ss_pred             ECCCCCEEEEEE
Confidence            888886 44444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=4.4e-06  Score=79.55  Aligned_cols=183  Identities=11%  Similarity=0.054  Sum_probs=110.2

Q ss_pred             ceEEEccCCCee-EEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           37 ESLAFDALGEGP-YTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        37 ~~i~~~~~G~~l-~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....++|||+.+ |++..  +..|+.+|..+++.+.+.                     ...+......++|++..|+++
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~---------------------~~~g~~~~~~~SPDG~~la~~  263 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG---------------------NFPGMTFAPRFSPDGRKVVMS  263 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee---------------------cCCCcccCcEECCCCCEEEEE
Confidence            367789999744 44432  368999999887544332                     111122356688855556555


Q ss_pred             eCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ...   ..|+.++.++++.+.+.. ..    .......++|||++|+++...               .....|+.+|.++
T Consensus       264 ~~~~g~~~Iy~~d~~~~~~~~Lt~-~~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g  323 (435)
T PRK05137        264 LSQGGNTDIYTMDLRSGTTTRLTD-SP----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADG  323 (435)
T ss_pred             EecCCCceEEEEECCCCceEEccC-CC----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCC
Confidence            332   249999999887765432 11    123357899999977766321               1123699999887


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  264 (359)
                      +..+.+..........+++|||+.+++.....  ..|+.+++++..   .+.+.. ........++++|+ |+++..
T Consensus       324 ~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        324 SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEeccC-CCCCCCCeECCCCCEEEEEEc
Confidence            77766543322234578999999887765443  468888865432   222222 12245678899997 444443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=1.1e-05  Score=76.69  Aligned_cols=184  Identities=12%  Similarity=0.126  Sum_probs=109.5

Q ss_pred             ceEEEccCCCee-EEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           37 ESLAFDALGEGP-YTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        37 ~~i~~~~~G~~l-~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....++|||+.+ |++..+  ..|+.+|.++++.+.+.                     ...+......++|++..|+++
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------------------~~~g~~~~~~~SpDG~~la~~  260 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------------------NFEGLNGAPAWSPDGSKLAFV  260 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------------------CCCCCcCCeEECCCCCEEEEE
Confidence            466889999755 555443  47999999877544331                     111112246788855566655


Q ss_pred             eCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ....   .|+++|.++++.+.+... .    .......++|||++++++...               .....|+.++..+
T Consensus       261 ~~~~g~~~Iy~~d~~~~~~~~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~  320 (430)
T PRK00178        261 LSKDGNPEIYVMDLASRQLSRVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNG  320 (430)
T ss_pred             EccCCCceEEEEECCCCCeEEcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence            3322   499999998876654321 1    122346789999977776221               1123699999887


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEE-EEEec
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW-VGIHS  265 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-v~~~~  265 (359)
                      ++.+.+..........+++||++.++++...++  .|+.+++++..   .+.+... .......++++|+.. ++...
T Consensus       321 g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~-~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        321 GRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT-SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC---EEEccCC-CCCCCceECCCCCEEEEEEec
Confidence            776655332222345678999998888765443  58888876532   2222221 122345788888743 44443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.75  E-value=2.4e-07  Score=89.03  Aligned_cols=169  Identities=15%  Similarity=0.134  Sum_probs=122.0

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      +.+...|.-.++.+||+|++|..++ ++|+++...+|-.--+++.+.+.                    -+.....+|++
T Consensus      1056 G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkv--------------------Lf~tdLVNPR~ 1115 (1289)
T KOG1214|consen 1056 GAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKV--------------------LFYTDLVNPRA 1115 (1289)
T ss_pred             CCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeE--------------------EEeecccCcce
Confidence            4445577777899999999998764 68899988888766666543222                    12344567999


Q ss_pred             EEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          101 LCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      |++|+-+++||.+++..   .|-+.++++..-+.+...    .+..||+|.+||..+.|-..|.++              
T Consensus      1116 iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~----DigLPNGLtfdpfs~~LCWvDAGt-------------- 1177 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT----DIGLPNGLTFDPFSKLLCWVDAGT-------------- 1177 (1289)
T ss_pred             EEeecccCceeeccccccCCcceeeccCCccceEEeec----ccCCCCCceeCcccceeeEEecCC--------------
Confidence            99999999999999864   488888876554444331    345799999999988677776653              


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                         .++-.+.+++-.-+.+...+..|.+|.-+  ++.+||++...++|...++...
T Consensus      1178 ---~rleC~~p~g~gRR~i~~~LqYPF~itsy--~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1178 ---KRLECTLPDGTGRRVIQNNLQYPFSITSY--ADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred             ---cceeEecCCCCcchhhhhcccCceeeeec--cccceeeccccCceEEeecccc
Confidence               35666666643334456677888887654  4459999999999999887654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.74  E-value=1.3e-05  Score=67.26  Aligned_cols=179  Identities=15%  Similarity=0.091  Sum_probs=111.9

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEG  126 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~  126 (359)
                      +|..+..+..|..|...++. ...                   .+.+.......+.+.|+++.|.++. ...|..||..+
T Consensus        12 iLvsA~YDhTIRfWqa~tG~-C~r-------------------Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S   70 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGI-CSR-------------------TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNS   70 (311)
T ss_pred             EEEeccCcceeeeeehhcCe-EEE-------------------EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccC
Confidence            46677888999999998873 111                   2334445567788999555554443 44688888887


Q ss_pred             CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceE
Q 018242          127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGV  206 (359)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gi  206 (359)
                      +.-.++.. +.+ .-..+..+.+..+|+.+|-+                  +.+|.+-.+|................+.+
T Consensus        71 ~np~Pv~t-~e~-h~kNVtaVgF~~dgrWMyTg------------------seDgt~kIWdlR~~~~qR~~~~~spVn~v  130 (311)
T KOG0315|consen   71 NNPNPVAT-FEG-HTKNVTAVGFQCDGRWMYTG------------------SEDGTVKIWDLRSLSCQRNYQHNSPVNTV  130 (311)
T ss_pred             CCCCceeE-Eec-cCCceEEEEEeecCeEEEec------------------CCCceEEEEeccCcccchhccCCCCcceE
Confidence            65433332 111 12356678888999966555                  34567777887654444333334556889


Q ss_pred             EEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          207 ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       207 a~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .+.|....|++.+ .++.|++||+..+.- ..+...+.......+.+++||...+|....++
T Consensus       131 vlhpnQteLis~d-qsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  131 VLHPNQTELISGD-QSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             EecCCcceEEeec-CCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence            9988766666665 668999999865421 12222221122355888999988877666554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.74  E-value=1.3e-06  Score=83.66  Aligned_cols=169  Identities=13%  Similarity=0.047  Sum_probs=107.2

Q ss_pred             CCcceEEEEecCCCeEEEEeCCC----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccc
Q 018242           95 CGRPLGLCFNKTNGDLYIADAYF----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH  170 (359)
Q Consensus        95 ~~~p~gi~~~~~~g~l~v~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~  170 (359)
                      .++|..+.++++++.+|++....    .+..++........... ..     ..  -...++|++.|+.           
T Consensus       234 dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn-i~-----~i--ea~vkdGK~~~V~-----------  294 (635)
T PRK02888        234 DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN-IA-----RI--EEAVKAGKFKTIG-----------  294 (635)
T ss_pred             CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc-hH-----HH--HHhhhCCCEEEEC-----------
Confidence            45788899999778888885321    24444443332211111 00     01  1334577767764           


Q ss_pred             eeeeeecCCCceEEEEeCCC-----CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC------Cccee
Q 018242          171 ISVILSGDKTGRLMKYDPAT-----KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK------AGTIE  239 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~-----~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~------~~~~~  239 (359)
                               .++|..+|..+     ..+.........|.|++++|||+++|+++..++.+.++|+...+      +....
T Consensus       295 ---------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        295 ---------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             ---------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence                     23688999876     34444556678899999999999999999999999999986421      21111


Q ss_pred             E-eec--CCCCCCceEECCCCCEEEEEecCCCccccccccCCcc-----------ceeeecCCccceeeee
Q 018242          240 I-VAQ--LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-----------GNVLIKLPIDIVKIHS  296 (359)
Q Consensus       240 ~-~~~--~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~  296 (359)
                      . ..+  ++-.|--.++|.+|+.|++.+-...     +++++..           ..++.++++.-+.-+.
T Consensus       366 ~vvaevevGlGPLHTaFDg~G~aytslf~dsq-----v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~  431 (635)
T PRK02888        366 AVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQ-----IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN  431 (635)
T ss_pred             eEEEeeccCCCcceEEECCCCCEEEeEeecce-----eEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence            2 222  4445888999999999998887664     5555532           2466666665444333

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.73  E-value=7.3e-06  Score=82.61  Aligned_cols=207  Identities=20%  Similarity=0.318  Sum_probs=121.5

Q ss_pred             CCCCCceEEEcc-CCCeeEEe-cCCCEEEEEEcC---C--cceEEEeecCCC----CCCCCCCcccccccccccCCcceE
Q 018242           32 GAIGPESLAFDA-LGEGPYTG-VSDGRIIKWHQD---Q--RRWLHFARTSPN----RDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        32 ~~~~p~~i~~~~-~G~~l~~~-~~~~~i~~~d~~---~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      ....-.-|+++| ||. ||++ .....|+++.--   .  +.+...+...+-    -++|.+    +.+........|.|
T Consensus       405 ~~sh~Yy~AvsPvdgt-lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD----GalA~dA~L~~PkG  479 (1899)
T KOG4659|consen  405 DTSHSYYIAVSPVDGT-LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD----GALAQDAQLIFPKG  479 (1899)
T ss_pred             CccceeEEEecCcCce-EEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc----chhcccceeccCCc
Confidence            344556888998 677 6655 444677776321   1  113332211110    001211    12233334456899


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecC---------------CCccccccceEEEeCCCCEEEEEeCCCcc
Q 018242          101 LCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQS---------------EGIPFRFCNSLDIDQSTGIIYFTDSSSQF  165 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~d~~g~~l~v~d~~~~~  165 (359)
                      |++|+ .|.||+++. ..|.++|.+ |-+..+....               ......+|.+++++|=.+.|||-|.    
T Consensus       480 Ia~dk-~g~lYfaD~-t~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~----  552 (1899)
T KOG4659|consen  480 IAFDK-MGNLYFADG-TRIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT----  552 (1899)
T ss_pred             eeEcc-CCcEEEecc-cEEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec----
Confidence            99999 999999984 357777765 3333332211               1234578999999986666999853    


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCcEEEEeCC---------------------CCCCceEEEccCCCEEEEEecCCCE
Q 018242          166 QRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN---------------------LSFPNGVALSEDGNYILLAETTSCR  224 (359)
Q Consensus       166 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---------------------~~~p~gia~~~d~~~l~v~~~~~~~  224 (359)
                                     .-|+++++. +.+..+.+.                     ...+..|+++++|. ||+++++..+
T Consensus       553 ---------------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rr  615 (1899)
T KOG4659|consen  553 ---------------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRR  615 (1899)
T ss_pred             ---------------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchh
Confidence                           257777766 455443211                     22357899999996 9999999876


Q ss_pred             EEEEEcCCCCCcceeEeec--------------------------CCCCCCceEECCCCCEEEEEecCCC
Q 018242          225 ILRYWLKTSKAGTIEIVAQ--------------------------LPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~--------------------------~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      |-+...-+. .+..-.++.                          .-..|..+|+.|+|.+++|..++..
T Consensus       616 iNrvr~~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~r  684 (1899)
T KOG4659|consen  616 INRVRKLST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSR  684 (1899)
T ss_pred             hhheEEecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchh
Confidence            665542110 001111111                          0123778999999999999988653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.72  E-value=3.2e-05  Score=72.92  Aligned_cols=181  Identities=12%  Similarity=0.043  Sum_probs=108.9

Q ss_pred             eEEEccCCC-eeE-EecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           38 SLAFDALGE-GPY-TGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        38 ~i~~~~~G~-~l~-~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ...++|||+ ++| ++..  ...|+.+|..+++.+.+.                     ...+......++|++..+.+.
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------~~~g~~~~~~~SPDG~~la~~  250 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------SSQGMLVVSDVSKDGSKLLLT  250 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------cCCCcEEeeEECCCCCEEEEE
Confidence            677889997 244 4544  367999999887655442                     111112234578855566665


Q ss_pred             eCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ...   ..|+.++.++++.+.+.. ...    .-....++|||++|+++...               .....||++|.++
T Consensus       251 ~~~~g~~~Iy~~dl~~g~~~~LT~-~~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~  310 (419)
T PRK04043        251 MAPKGQPDIYLYDTNTKTLTQITN-YPG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNS  310 (419)
T ss_pred             EccCCCcEEEEEECCCCcEEEccc-CCC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence            332   259999998887665532 111    11124799999988887432               1123699999998


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCC--------CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTS--------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV  261 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv  261 (359)
                      ++.+.+......  ...++|||+.+.++....        ..|+.++++++.   .+.+.. .+.-....+++||+ |++
T Consensus       311 g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~-~~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        311 GSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTA-NGVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             CCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCC-CCCcCCeEECCCCCEEEE
Confidence            888655432111  248999999876665543        478888876542   222222 12223467889996 555


Q ss_pred             EEec
Q 018242          262 GIHS  265 (359)
Q Consensus       262 ~~~~  265 (359)
                      ++..
T Consensus       385 ~~~~  388 (419)
T PRK04043        385 IKYL  388 (419)
T ss_pred             EEcc
Confidence            5543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.70  E-value=1.6e-05  Score=66.81  Aligned_cols=186  Identities=15%  Similarity=0.115  Sum_probs=116.0

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..+.|..+|+-+|++.++|.+.+||...-+..                  +  .+... .....+++.|...+|++++..
T Consensus        87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~q------------------R--~~~~~-spVn~vvlhpnQteLis~dqs  145 (311)
T KOG0315|consen   87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ------------------R--NYQHN-SPVNTVVLHPNQTELISGDQS  145 (311)
T ss_pred             EEEEEeecCeEEEecCCCceEEEEeccCcccc------------------h--hccCC-CCcceEEecCCcceEEeecCC
Confidence            46778889998889999999999998653111                  0  11111 224678888867889998866


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-  195 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-  195 (359)
                      +.|..+|...........  + .....+..+.+++||. ..++-                 ...|..|+++.-++.... 
T Consensus       146 g~irvWDl~~~~c~~~li--P-e~~~~i~sl~v~~dgs-ml~a~-----------------nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELI--P-EDDTSIQSLTVMPDGS-MLAAA-----------------NNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             CcEEEEEccCCccccccC--C-CCCcceeeEEEcCCCc-EEEEe-----------------cCCccEEEEEccCCCcccc
Confidence            669999998765443221  1 1224678899999999 55551                 234677777765432221 


Q ss_pred             Ee--CCC----CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242          196 LL--GNL----SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       196 ~~--~~~----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      +.  ..+    ...-...++||+++ +++.+.+.++..|+.++- . ..+...+ -..-..+-+|+.||.+.++....+
T Consensus       205 l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  205 LEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             ceEhhheecccceEEEEEECCCCcE-EEeecCCceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence            11  111    12234568999984 566667789999987553 1 1121112 122355678899998777555433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.69  E-value=1.2e-05  Score=76.14  Aligned_cols=184  Identities=14%  Similarity=0.093  Sum_probs=109.5

Q ss_pred             eEEEccCCCeeEEecC-C--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           38 SLAFDALGEGPYTGVS-D--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...++|||+.++.... .  ..|+.+|..+++...+.                     ...+....+++++++..++++.
T Consensus       194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------------------~~~~~~~~~~~spDg~~l~~~~  252 (417)
T TIGR02800       194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------------------SFPGMNGAPAFSPDGSKLAVSL  252 (417)
T ss_pred             cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------------------cCCCCccceEECCCCCEEEEEE
Confidence            4568899985554432 2  47999998876444332                     1112233467888555676654


Q ss_pred             CC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 AY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ..   ..|+.++..+++.+.+... .    .......++++|++|+++...               .....||.++.+++
T Consensus       253 ~~~~~~~i~~~d~~~~~~~~l~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~  312 (417)
T TIGR02800       253 SKDGNPDIYVMDLDGKQLTRLTNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGG  312 (417)
T ss_pred             CCCCCccEEEEECCCCCEEECCCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCC
Confidence            32   2499999988876554321 1    112245788999866665221               11236999998877


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecC
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~  266 (359)
                      +.+.+..........+++||++.++++....  .+|+.+++...   ..+.+.. ........+.++|+ |+++....
T Consensus       313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD-TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC-CCCCCCceECCCCCEEEEEEeCC
Confidence            7665544444456778999999888876543  37888887543   2222222 11234457888886 55555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.66  E-value=1.3e-05  Score=69.29  Aligned_cols=195  Identities=10%  Similarity=0.091  Sum_probs=116.1

Q ss_pred             CCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.+++++|+-+.||+.++. ..|..++.++.-.++++-                    .....|-+|.+.. +|...++
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL--------------------~g~~DpE~Ieyig-~n~fvi~  145 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL--------------------TGFSDPETIEYIG-GNQFVIV  145 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc--------------------cccCChhHeEEec-CCEEEEE
Confidence            45589999998888877665 578888887764444421                    1123455676664 5555555


Q ss_pred             eCCC-cEEE--EeCCCCeEEEEee---cC--CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          114 DAYF-GLLK--VGPEGGLATAVAT---QS--EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       114 ~~~~-~i~~--~~~~~~~~~~~~~---~~--~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +... .++.  ++.++.... ...   ..  .........++++|+.++++|++-                .....+|+.
T Consensus       146 dER~~~l~~~~vd~~t~~~~-~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK----------------Er~P~~I~~  208 (316)
T COG3204         146 DERDRALYLFTVDADTTVIS-AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK----------------ERNPIGIFE  208 (316)
T ss_pred             ehhcceEEEEEEcCCccEEe-ccceEEeccccCCCCcCceeeecCCCCceEEEEE----------------ccCCcEEEE
Confidence            5433 3444  444443221 111   00  111244678999999988899981                222346777


Q ss_pred             EeCCCCcEEEEeCC---------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC------CCCCc
Q 018242          186 YDPATKQVTVLLGN---------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP------GFPDN  250 (359)
Q Consensus       186 ~d~~~~~~~~~~~~---------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~p~~  250 (359)
                      ++.....+......         .....|+.+++..+.|+|...++..|...+.+++............      ..+.|
T Consensus       209 ~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEG  288 (316)
T COG3204         209 VTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEG  288 (316)
T ss_pred             EecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcce
Confidence            76432222111100         1234688999877778998888999999998765322111111111      13788


Q ss_pred             eEECCCCCEEEEEecCC
Q 018242          251 IKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       251 i~~d~~G~lwv~~~~~~  267 (359)
                      ++.|.+|+||+.+..+.
T Consensus       289 iamDd~g~lYIvSEPnl  305 (316)
T COG3204         289 IAMDDDGNLYIVSEPNL  305 (316)
T ss_pred             eEECCCCCEEEEecCCc
Confidence            99999999999887654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=7.3e-05  Score=71.03  Aligned_cols=141  Identities=12%  Similarity=0.062  Sum_probs=85.9

Q ss_pred             ceEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           98 PLGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ....+++|++..|.+....   ..|+.++.++++.+.+.. ..+    ......++|||++|+++...            
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~-~~~----~~~~~~~SPDG~~La~~~~~------------  263 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPR----HNGAPAFSPDGSKLAFALSK------------  263 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-CCC----CcCCeEECCCCCEEEEEEcC------------
Confidence            3467889954455544322   248888998887655432 111    23357999999977776321            


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIK  252 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  252 (359)
                         .....|+.+|.++++.+.+..........+++|||+.++++....  ..|+++++++..   .+.+...........
T Consensus       264 ---~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~  337 (429)
T PRK03629        264 ---TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDAD  337 (429)
T ss_pred             ---CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEE
Confidence               112359999998887776544433456788999999775554332  378888875532   222222222234578


Q ss_pred             ECCCCCEEE
Q 018242          253 RSPRGGFWV  261 (359)
Q Consensus       253 ~d~~G~lwv  261 (359)
                      ++++|+..+
T Consensus       338 ~SpDG~~Ia  346 (429)
T PRK03629        338 VSSDGKFMV  346 (429)
T ss_pred             ECCCCCEEE
Confidence            889997443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=2.3e-05  Score=74.52  Aligned_cols=178  Identities=13%  Similarity=0.159  Sum_probs=104.9

Q ss_pred             ceEEEccCCCeeE-EecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           37 ESLAFDALGEGPY-TGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        37 ~~i~~~~~G~~l~-~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .++.++|||+.+. ++..  +..|+.||..+++.+.+.                  ...   +....++++|++..|+++
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~------------------~~~---g~~~~~~wSPDG~~La~~  265 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA------------------SFR---GHNGAPAFSPDGSRLAFA  265 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe------------------cCC---CccCceeECCCCCEEEEE
Confidence            4688999998554 4332  247999998876443332                  111   112246788845556665


Q ss_pred             eCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ...+   .|+.++.++++.+.+.. .    ........++|||++|+++...               ...-.||.++..+
T Consensus       266 ~~~~g~~~Iy~~d~~~~~~~~lt~-~----~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~  325 (429)
T PRK01742        266 SSKDGVLNIYVMGANGGTPSQLTS-G----AGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASG  325 (429)
T ss_pred             EecCCcEEEEEEECCCCCeEeecc-C----CCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCC
Confidence            4322   38888988877655432 1    1134568999999977766211               1123688888876


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      +..+.+ ... . ...+++|||+.+++...  ..++++|+....   .+.+.. ........++++|+..+...
T Consensus       326 ~~~~~l-~~~-~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~-~~~~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        326 GGASLV-GGR-G-YSAQISADGKTLVMING--DNVVKQDLTSGS---TEVLSS-TFLDESPSISPNGIMIIYSS  390 (429)
T ss_pred             CCeEEe-cCC-C-CCccCCCCCCEEEEEcC--CCEEEEECCCCC---eEEecC-CCCCCCceECCCCCEEEEEE
Confidence            655444 221 1 34678999998777654  568888875432   122211 11124577899998555443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.63  E-value=1.2e-06  Score=84.34  Aligned_cols=192  Identities=15%  Similarity=0.155  Sum_probs=127.8

Q ss_pred             CCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .-|-+|.+|= +-.++|++.....|.+-.+++.+.+++                    +......|-||++|....++|.
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti--------------------~n~~L~SPEGiAVDh~~Rn~yw 1084 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETI--------------------VNSGLISPEGIAVDHIRRNMYW 1084 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCcee--------------------ecccCCCccceeeeeccceeee
Confidence            4567888884 455788888888888877776654432                    2334467889999988899999


Q ss_pred             EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ++.. +.|-.-.+++.+.+.+...    ....|.+|++|+=++.||.+|+    .+++           -.|-..+.++.
T Consensus      1085 tDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDW----nRen-----------PkIets~mDG~ 1145 (1289)
T KOG1214|consen 1085 TDSVLDKIEVALLDGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDW----NREN-----------PKIETSSMDGE 1145 (1289)
T ss_pred             eccccchhheeecCCceeeEEEee----cccCcceEEeecccCceeeccc----cccC-----------CcceeeccCCc
Confidence            9764 3454444444443333321    3457889999976555999964    3322           13444444432


Q ss_pred             cEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          192 QVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       192 ~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .-+ .+..+.--|||+.|+|..+.|-|.+..++++.....++.  +.+..+..+. +|-+|.-+.+. +|.+.|....
T Consensus      1146 NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~Lq-YPF~itsy~~~-fY~TDWk~n~ 1219 (1289)
T KOG1214|consen 1146 NRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNLQ-YPFSITSYADH-FYHTDWKRNG 1219 (1289)
T ss_pred             cceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhccc-Cceeeeecccc-ceeeccccCc
Confidence            222 344667789999999999999999999999998875543  3333333332 48888877766 8888886543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.60  E-value=2.3e-05  Score=69.11  Aligned_cols=181  Identities=15%  Similarity=0.100  Sum_probs=109.3

Q ss_pred             CCCEEEEeeCCCCCCc-eEEEccCCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC
Q 018242           22 TQGVVQYQIEGAIGPE-SLAFDALGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC   95 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~-~i~~~~~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (359)
                      ++...++..+.-..=. --++++||++||++-++     |.|-+||... .+..+.                  ++....
T Consensus        38 g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~------------------E~~s~G   98 (305)
T PF07433_consen   38 GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIG------------------EFPSHG   98 (305)
T ss_pred             CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEe------------------EecCCC
Confidence            3444455554311111 34578999988887544     8899999883 344433                  455556


Q ss_pred             CcceEEEEecCCCeEEEEeCC------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEE
Q 018242           96 GRPLGLCFNKTNGDLYIADAY------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIY  157 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~  157 (359)
                      ..|+-+.+.+++..|.|++.+                  ..|..+|..+|++..-....+......+..|+++++|. +|
T Consensus        99 IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~  177 (305)
T PF07433_consen   99 IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-VA  177 (305)
T ss_pred             cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-EE
Confidence            678999999944488888731                  13666666667643322222223445788999999999 99


Q ss_pred             EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC------C-CCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN------L-SFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~------~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ++.....   ..       ....--|...... ..++.+...      + ...-.||++.+++.+.++....+++..||.
T Consensus       178 ~a~Q~qg---~~-------~~~~PLva~~~~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  178 FAMQYQG---DP-------GDAPPLVALHRRG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             EEEecCC---CC-------CccCCeEEEEcCC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            9954211   00       0001124444443 223322211      1 223589999999988899999999999986


Q ss_pred             CCC
Q 018242          231 KTS  233 (359)
Q Consensus       231 ~~~  233 (359)
                      .+.
T Consensus       247 ~tg  249 (305)
T PF07433_consen  247 ATG  249 (305)
T ss_pred             CCC
Confidence            554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.60  E-value=0.00036  Score=64.59  Aligned_cols=195  Identities=15%  Similarity=0.121  Sum_probs=111.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.++.++|||.++.....++.++.||.++++..-.-.                 .-....+...++.++|+..++..+.
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~-----------------~~~aHkGsIfalsWsPDs~~~~T~S  254 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE-----------------DSDAHKGSIFALSWSPDSTQFLTVS  254 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec-----------------CCCCccccEEEEEECCCCceEEEec
Confidence            34589999999966667788999999999875432210                 0012224456777888444444444


Q ss_pred             CCCcEEEEeCCCCeEEEEee---cCCCc------------------------------------cccccceEEEeCCCCE
Q 018242          115 AYFGLLKVGPEGGLATAVAT---QSEGI------------------------------------PFRFCNSLDIDQSTGI  155 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~---~~~~~------------------------------------~~~~~~~l~~d~~g~~  155 (359)
                      ....+-.+|..++++..-..   ...++                                    ....+..+.+.++|.+
T Consensus       255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence            33334455555443321100   00000                                    1123444555555554


Q ss_pred             EEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC--CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       156 l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ||-+                  +..|.|..|+..++..-.+.+  +.....+++.+..+. ++... .++.|.++++.++
T Consensus       335 i~Sg------------------syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g-~Dd~l~~~~~~~~  394 (603)
T KOG0318|consen  335 IYSG------------------SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG-WDDTLRVISLKDN  394 (603)
T ss_pred             EEee------------------ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe-cCCeEEEEecccC
Confidence            4433                  557889999987765544432  223445777665443 45544 5679999988665


Q ss_pred             CCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          234 KAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       234 ~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ..+..+. .+++..|.++++.++|.+.+.+...+
T Consensus       395 ~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~  427 (603)
T KOG0318|consen  395 GYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISD  427 (603)
T ss_pred             cccccce-eecCCCceeEEEcCCCCEEEEEecCc
Confidence            4443332 33556688999999987666555444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.59  E-value=0.00019  Score=66.98  Aligned_cols=253  Identities=16%  Similarity=0.163  Sum_probs=125.4

Q ss_pred             CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeC
Q 018242           45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP  124 (359)
Q Consensus        45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~  124 (359)
                      |..+|++..++.++.+|+.+++...-.                  .....  ...+.+++  ++.+|+++..+.++.+|.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~------------------~~~~~--~~~~p~v~--~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRV------------------DLDER--LSGGVGAD--GGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeee------------------cCCCC--cccceEEc--CCEEEEEcCCCEEEEEEC
Confidence            334899988899999998877533211                  01000  01123343  788999876667999999


Q ss_pred             CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCC-
Q 018242          125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP-  203 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-  203 (359)
                      ++|+...... ..+...   ...++ .++. +|+..                  ..+.|+.+|+++++..........+ 
T Consensus       123 ~tG~~~W~~~-~~~~~~---~~p~v-~~~~-v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       123 EDGKELWRAK-LSSEVL---SPPLV-ANGL-VVVRT------------------NDGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             CCCcEeeeec-cCceee---cCCEE-ECCE-EEEEC------------------CCCeEEEEEcCCCceeeEEccCCCce
Confidence            8887643222 111111   11122 2445 88762                  2467999999888765433211110 


Q ss_pred             -----ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC---------CCceEECCCCCEEEEEecCCCc
Q 018242          204 -----NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF---------PDNIKRSPRGGFWVGIHSRRKG  269 (359)
Q Consensus       204 -----~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------p~~i~~d~~G~lwv~~~~~~~~  269 (359)
                           ...++. ++ .+|+. ..++.++.+|+..++......+....+.         .....+ .++.+|+++..+.  
T Consensus       179 ~~~~~~sp~~~-~~-~v~~~-~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~--  252 (377)
T TIGR03300       179 TLRGSASPVIA-DG-GVLVG-FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGR--  252 (377)
T ss_pred             eecCCCCCEEE-CC-EEEEE-CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCE--
Confidence                 111222 33 35544 4567899998754422111111100000         001122 2467888776543  


Q ss_pred             cccccccCC-ccceeeecCCccce----eeeeecccccCcceEEEEECC-CCCEEEEEEccCCceeeceEEEEEeCCEEE
Q 018242          270 ISKLVLSFP-WIGNVLIKLPIDIV----KIHSSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW  343 (359)
Q Consensus       270 ~~~~~~~~~-~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~  343 (359)
                          +..++ .+|++....+.+..    ......+....+ +.++++|. +|+.+..+....+.   ........++.||
T Consensus       253 ----l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~-G~l~~~d~~tG~~~W~~~~~~~~---~~ssp~i~g~~l~  324 (377)
T TIGR03300       253 ----VAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDAD-GVVVALDRRSGSELWKNDELKYR---QLTAPAVVGGYLV  324 (377)
T ss_pred             ----EEEEECCCCcEEEeeccCCccCceEeCCEEEEECCC-CeEEEEECCCCcEEEccccccCC---ccccCEEECCEEE
Confidence                44544 46776655432210    001111222233 45667765 35555443221111   1112223467888


Q ss_pred             EecCCCCeEEEEcCC
Q 018242          344 IGSVNMPYAGLYNYS  358 (359)
Q Consensus       344 ig~~~~~~l~~~~~~  358 (359)
                      +++. +..|..++..
T Consensus       325 ~~~~-~G~l~~~d~~  338 (377)
T TIGR03300       325 VGDF-EGYLHWLSRE  338 (377)
T ss_pred             EEeC-CCEEEEEECC
Confidence            8875 5567776654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=0.00013  Score=69.78  Aligned_cols=143  Identities=13%  Similarity=0.072  Sum_probs=85.9

Q ss_pred             eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ....++|++..|+++...+   .|+.+|.++++.+.+.. ..+    ......++|||++|+++...             
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~-------------  282 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK-------------  282 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC-------------
Confidence            3466888555565543322   49999998887655432 111    12357899999977765221             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                        .....|+.+|.++++.+.+..........+++||++.++++...  ...|+++++++.+.   +.+..........++
T Consensus       283 --~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~~~~  357 (448)
T PRK04792        283 --DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLGGSI  357 (448)
T ss_pred             --CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcCeeE
Confidence              11236999999888776654433344567899999987776543  34688888764422   222111112234678


Q ss_pred             CCCCC-EEEEEe
Q 018242          254 SPRGG-FWVGIH  264 (359)
Q Consensus       254 d~~G~-lwv~~~  264 (359)
                      +++|+ |+++..
T Consensus       358 SpDG~~l~~~~~  369 (448)
T PRK04792        358 TPDGRSMIMVNR  369 (448)
T ss_pred             CCCCCEEEEEEe
Confidence            89986 444443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.58  E-value=1.7e-05  Score=68.74  Aligned_cols=171  Identities=17%  Similarity=0.234  Sum_probs=91.7

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCc--ce-----EEEeecCCCCCCCCCCccccccccccc
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RW-----LHFARTSPNRDGCEGAYEYDHAAKEHI   94 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (359)
                      ++.+.+++..++..||+|+...+|.++.+.-.++.++.++.+..  ..     ..+.                 +.+...
T Consensus        53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~-----------------l~~~~~  115 (248)
T PF06977_consen   53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKIS-----------------LGFPNK  115 (248)
T ss_dssp             --EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE--------------------S--
T ss_pred             CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEe-----------------cccccC
Confidence            45566899988999999999988884444445788988876321  11     1111                 011111


Q ss_pred             C-CcceEEEEecCCCeEEEEeCCC--cEEEEeC--CCCeEEEEee-c-C-CCccccccceEEEeCCCCEEEEEeCCCccc
Q 018242           95 C-GRPLGLCFNKTNGDLYIADAYF--GLLKVGP--EGGLATAVAT-Q-S-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus        95 ~-~~p~gi~~~~~~g~l~v~~~~~--~i~~~~~--~~~~~~~~~~-~-~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~  166 (359)
                      . ...-|+++|+.++++|++....  +|+.++.  .......... . . .......+.++.++|..+++|+-...    
T Consensus       116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e----  191 (248)
T PF06977_consen  116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE----  191 (248)
T ss_dssp             -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT----
T ss_pred             CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC----
Confidence            1 1246999999889999985443  4777765  2222221111 0 1 12233468899999987669998443    


Q ss_pred             cccceeeeeecCCCceEEEEeCCCCcEEEE--eC-------CCCCCceEEEccCCCEEEEEecCCCEEEEE
Q 018242          167 RRNHISVILSGDKTGRLMKYDPATKQVTVL--LG-------NLSFPNGVALSEDGNYILLAETTSCRILRY  228 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~-------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~  228 (359)
                                   ...|..+|.++.-....  ..       ....|.|||++++|+ ||+++. -+..++|
T Consensus       192 -------------s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  192 -------------SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSE-PNLFYRF  247 (248)
T ss_dssp             -------------TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEET-TTEEEEE
T ss_pred             -------------CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcC-CceEEEe
Confidence                         34688888764322222  12       245799999999986 888875 5678877

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=7.6e-05  Score=71.06  Aligned_cols=142  Identities=16%  Similarity=0.143  Sum_probs=86.0

Q ss_pred             eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...+++|++..|+++....   .|++++.++++.+.+.. ..+    ......++|||++|+++...             
T Consensus       207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~-------------  268 (433)
T PRK04922        207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR-------------  268 (433)
T ss_pred             ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC-------------
Confidence            4566788555566554322   49999998887655432 111    22357899999977666321             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                        .....|+.+|.++++.+.+..........+++|||+.++++....  ..|+.+++++...   +.+..........++
T Consensus       269 --~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt~~g~~~~~~~~  343 (433)
T PRK04922        269 --DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLTFQGNYNARASV  343 (433)
T ss_pred             --CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEeecCCCCccCEEE
Confidence              112369999998887766543333335678999999877665433  3588888755322   222111223345788


Q ss_pred             CCCCC-EEEEE
Q 018242          254 SPRGG-FWVGI  263 (359)
Q Consensus       254 d~~G~-lwv~~  263 (359)
                      +++|+ |+++.
T Consensus       344 SpDG~~Ia~~~  354 (433)
T PRK04922        344 SPDGKKIAMVH  354 (433)
T ss_pred             CCCCCEEEEEE
Confidence            99997 44443

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.55  E-value=3.2e-05  Score=78.19  Aligned_cols=190  Identities=19%  Similarity=0.293  Sum_probs=119.6

Q ss_pred             CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      .+..|..++..+||- +|++..+ .|.++-++++ ..++....                .. .......|+++|-+|.||
T Consensus       363 ~L~aPvala~a~DGS-l~VGDfN-yIRRI~~dg~-v~tIl~L~----------------~t-~~sh~Yy~AvsPvdgtly  422 (1899)
T KOG4659|consen  363 SLFAPVALAYAPDGS-LIVGDFN-YIRRISQDGQ-VSTILTLG----------------LT-DTSHSYYIAVSPVDGTLY  422 (1899)
T ss_pred             eeeceeeEEEcCCCc-EEEccch-heeeecCCCc-eEEEEEec----------------CC-CccceeEEEecCcCceEE
Confidence            355789999999999 8888774 6888877764 44443111                01 111235799999999999


Q ss_pred             EEeCCC-cEEEEeCC-C----CeEEEEeecC----------C------CccccccceEEEeCCCCEEEEEeCCCcccccc
Q 018242          112 IADAYF-GLLKVGPE-G----GLATAVATQS----------E------GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN  169 (359)
Q Consensus       112 v~~~~~-~i~~~~~~-~----~~~~~~~~~~----------~------~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~  169 (359)
                      +++... .|+|+..- .    +..+.++...          .      .....+|.+|++|.+|. ||++|..       
T Consensus       423 vSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~-lYfaD~t-------  494 (1899)
T KOG4659|consen  423 VSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGN-LYFADGT-------  494 (1899)
T ss_pred             ecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCc-EEEeccc-------
Confidence            998754 58887421 1    1122232211          0      12356899999999999 9999754       


Q ss_pred             ceeeeeecCCCceEEEEeCCCCcEEEEe--------------------CCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          170 HISVILSGDKTGRLMKYDPATKQVTVLL--------------------GNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       170 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~--------------------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                                  .|-++|.+ +-+..+.                    -.+..|..+|++|=.+.|||.+  ++-|++++
T Consensus       495 ------------~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit  559 (1899)
T KOG4659|consen  495 ------------RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRIT  559 (1899)
T ss_pred             ------------EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEc
Confidence                        34445543 3332221                    1245788999999555688875  45677665


Q ss_pred             cCCCCCcceeEeec------C---------------CCCCCceEECCCCCEEEEEecCCC
Q 018242          230 LKTSKAGTIEIVAQ------L---------------PGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       230 ~~~~~~~~~~~~~~------~---------------~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ....    ..+...      +               --.+..|++.++|.|||+..++++
T Consensus       560 ~~~r----V~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rr  615 (1899)
T KOG4659|consen  560 VVHR----VRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRR  615 (1899)
T ss_pred             cCcc----EEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchh
Confidence            4211    111111      0               123678999999999999988654

>PTZ00421 coronin; Provisional

Probab=98.54  E-value=0.00021  Score=68.68  Aligned_cols=195  Identities=12%  Similarity=0.078  Sum_probs=110.3

Q ss_pred             ceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-e
Q 018242           37 ESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-D  114 (359)
Q Consensus        37 ~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~  114 (359)
                      .+++++| ++++++++..++.|..||..+.....-.         ..    .+..+.........+++++..++++++ .
T Consensus        79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~---------~~----~l~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI---------SD----PIVHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc---------Cc----ceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            5889998 7887888999999999997654211000         00    000222233445678899854455554 4


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..+|.++++.......    ....+..+.++++|+ +.++-                 ...+.|..||+.+++..
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~----h~~~V~sla~spdG~-lLatg-----------------s~Dg~IrIwD~rsg~~v  203 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKC----HSDQITSLEWNLDGS-LLCTT-----------------SKDKKLNIIDPRDGTIV  203 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcC----CCCceEEEEEECCCC-EEEEe-----------------cCCCEEEEEECCCCcEE
Confidence            444588889987764322211    113577899999999 55552                 34567889998876643


Q ss_pred             EEe-CC-CCCCceEEEccCCCEEEEEe---cCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEE-EEecCC
Q 018242          195 VLL-GN-LSFPNGVALSEDGNYILLAE---TTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWV-GIHSRR  267 (359)
Q Consensus       195 ~~~-~~-~~~p~gia~~~d~~~l~v~~---~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv-~~~~~~  267 (359)
                      ... .+ ......+.+.+++..++.+.   ..++.|..||+..... ...... .......-..+|+++++++ +..+.+
T Consensus       204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg  282 (493)
T PTZ00421        204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG  282 (493)
T ss_pred             EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence            222 11 11223556777766555443   2357899999754321 111111 1111111235788887544 443344

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.50  E-value=0.00038  Score=65.47  Aligned_cols=262  Identities=11%  Similarity=0.069  Sum_probs=126.7

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCc-ceEEEEecCCCeEEEEeCCCcEEE
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGR-PLGLCFNKTNGDLYIADAYFGLLK  121 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-p~gi~~~~~~g~l~v~~~~~~i~~  121 (359)
                      +|+ +|+...++.++.+|.++++...-........           ..... ... ..+++++  ++++|++...+.++.
T Consensus        69 ~~~-vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~~v~--~~~v~v~~~~g~l~a  134 (394)
T PRK11138         69 YNK-VYAADRAGLVKALDADTGKEIWSVDLSEKDG-----------WFSKNKSALLSGGVTVA--GGKVYIGSEKGQVYA  134 (394)
T ss_pred             CCE-EEEECCCCeEEEEECCCCcEeeEEcCCCccc-----------ccccccccccccccEEE--CCEEEEEcCCCEEEE
Confidence            445 8988888999999998876443221110000           00000 000 1133444  789999876667999


Q ss_pred             EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC-
Q 018242          122 VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL-  200 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-  200 (359)
                      +|.++|+..-... ..+.....|   ++. ++. +|+..                  ..+.|+.+|+++|+........ 
T Consensus       135 ld~~tG~~~W~~~-~~~~~~ssP---~v~-~~~-v~v~~------------------~~g~l~ald~~tG~~~W~~~~~~  190 (394)
T PRK11138        135 LNAEDGEVAWQTK-VAGEALSRP---VVS-DGL-VLVHT------------------SNGMLQALNESDGAVKWTVNLDV  190 (394)
T ss_pred             EECCCCCCccccc-CCCceecCC---EEE-CCE-EEEEC------------------CCCEEEEEEccCCCEeeeecCCC
Confidence            9999887543221 111111111   222 455 88872                  2457999999988876543211 


Q ss_pred             C-----CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---------CCCceEECCCCCEEEEEecC
Q 018242          201 S-----FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---------FPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       201 ~-----~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~p~~i~~d~~G~lwv~~~~~  266 (359)
                      .     .....++. + ..+|+.. .++.++.++...++...........+         ......+ .+|.+|+++..+
T Consensus       191 ~~~~~~~~~sP~v~-~-~~v~~~~-~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g  266 (394)
T PRK11138        191 PSLTLRGESAPATA-F-GGAIVGG-DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNG  266 (394)
T ss_pred             CcccccCCCCCEEE-C-CEEEEEc-CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEcCC
Confidence            0     00111222 2 3356654 56788888876543221111111000         0001112 246788776543


Q ss_pred             CCccccccccC-CccceeeecCCcccee----eeeecccccCcceEEEEECCC-CCEEEEEEccCCceeeceEEEEEeCC
Q 018242          267 RKGISKLVLSF-PWIGNVLIKLPIDIVK----IHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKDG  340 (359)
Q Consensus       267 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~g  340 (359)
                      .      +..+ ..+|+.+.+.+.+...    .....+-...+ +.+++++.+ |+.+.......+.   ........++
T Consensus       267 ~------l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g  336 (394)
T PRK11138        267 N------LVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQN-DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNG  336 (394)
T ss_pred             e------EEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCC-CeEEEEECCCCcEEEcccccCCC---cccCCEEECC
Confidence            3      3443 3467766554332110    00111111223 456666643 4444332211111   1122223578


Q ss_pred             EEEEecCCCCeEEEEcCC
Q 018242          341 NLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       341 ~l~ig~~~~~~l~~~~~~  358 (359)
                      +||+++. +..|..++.+
T Consensus       337 ~l~v~~~-~G~l~~ld~~  353 (394)
T PRK11138        337 YLVVGDS-EGYLHWINRE  353 (394)
T ss_pred             EEEEEeC-CCEEEEEECC
Confidence            8998875 5567777654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.48  E-value=5.1e-06  Score=74.30  Aligned_cols=154  Identities=11%  Similarity=0.103  Sum_probs=98.5

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .-|.++||.+.+.++..+.-+..||.+++...+ +.                    ......+...+.-|+.-.+.++..
T Consensus       273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--------------------~~~~~S~~sc~W~pDg~~~V~Gs~  332 (519)
T KOG0293|consen  273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--------------------SGLGFSVSSCAWCPDGFRFVTGSP  332 (519)
T ss_pred             EEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--------------------cCcCCCcceeEEccCCceeEecCC
Confidence            468899999966666666678899998874322 11                    112344667888884444444444


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ...++.++.+++.....    .+.....++++++.+||++++..+.                  ...+..|+.++..-+-
T Consensus       333 dr~i~~wdlDgn~~~~W----~gvr~~~v~dlait~Dgk~vl~v~~------------------d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  333 DRTIIMWDLDGNILGNW----EGVRDPKVHDLAITYDGKYVLLVTV------------------DKKIRLYNREARVDRG  390 (519)
T ss_pred             CCcEEEecCCcchhhcc----cccccceeEEEEEcCCCcEEEEEec------------------ccceeeechhhhhhhc
Confidence            55699999987653221    2222346789999999997766631                  3356667766533221


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +...-.....+.++.|++ +...+-.++.+..||+..+
T Consensus       391 lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  391 LISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEEN  427 (519)
T ss_pred             cccccCceeEEEEcCCCc-EEEEEcccCeeEEeecchh
Confidence            222223346788999998 5666677889999998754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00031  Score=66.88  Aligned_cols=142  Identities=13%  Similarity=0.135  Sum_probs=84.7

Q ss_pred             eEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 LGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ....++|++..|.+....   ..|++++.++++.+.+.. ..+    ......++|||++|+++...             
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG~~la~~~~~-------------  263 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDGSKLAFVLSK-------------  263 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCCCEEEEEEcc-------------
Confidence            456788855566444322   249999999887655432 111    22357899999977766321             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                        .....|+.+|.+++..+.+...........++||++.++++...  ...|+++++.+.+.   +.+...........+
T Consensus       264 --~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt~~~~~~~~~~~  338 (430)
T PRK00178        264 --DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVTFVGNYNARPRL  338 (430)
T ss_pred             --CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCCccceEE
Confidence              11236999999888776554332334456899999987766533  24788888755432   222111122234678


Q ss_pred             CCCCC-EEEEE
Q 018242          254 SPRGG-FWVGI  263 (359)
Q Consensus       254 d~~G~-lwv~~  263 (359)
                      +++|+ +++..
T Consensus       339 Spdg~~i~~~~  349 (430)
T PRK00178        339 SADGKTLVMVH  349 (430)
T ss_pred             CCCCCEEEEEE
Confidence            88886 44444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=0.00026  Score=67.24  Aligned_cols=139  Identities=12%  Similarity=0.074  Sum_probs=81.9

Q ss_pred             eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...+++|++..|+++...+   .|+.+|..+++.+.+.. ..    ......+++|||++|+++...             
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~----g~~~~~~~SPDG~~la~~~~~-------------  260 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FK----GSNSAPAWSPDGRTLAVALSR-------------  260 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CC----CCccceEECCCCCEEEEEEcc-------------
Confidence            4567888555666554322   49999999887655432 11    123467899999877765221             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                        .....||.+|.+++..+.+..........+++|||+.++++...  ...|+.+++.+..   .+.+...........+
T Consensus       261 --~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        261 --DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSPRI  335 (427)
T ss_pred             --CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCceEE
Confidence              11236999998877665543332233457899999987765433  3357776654432   1222111122334678


Q ss_pred             CCCCCEE
Q 018242          254 SPRGGFW  260 (359)
Q Consensus       254 d~~G~lw  260 (359)
                      +++|+..
T Consensus       336 SpDG~~I  342 (427)
T PRK02889        336 SPDGKLL  342 (427)
T ss_pred             CCCCCEE
Confidence            8999743

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.46  E-value=0.00045  Score=63.98  Aligned_cols=197  Identities=15%  Similarity=0.145  Sum_probs=127.1

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .++..+-...-.+++..++|..+|.+..+|.|..|+..++.--.+                   .-....+...+|+.+.
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~-------------------~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL-------------------AGKGHTNQIKGMAASE  373 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc-------------------ccccccceEEEEeecC
Confidence            344445556777899999999999999999999999876521100                   0012223456777775


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEE-eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAV-ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                       .+.++...+.+.|.+++.+.+..+.- .-..    ...|-++++.++|..+.++.                   ...|.
T Consensus       374 -~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l----g~QP~~lav~~d~~~avv~~-------------------~~~iv  429 (603)
T KOG0318|consen  374 -SGELFTIGWDDTLRVISLKDNGYTKSEVVKL----GSQPKGLAVLSDGGTAVVAC-------------------ISDIV  429 (603)
T ss_pred             -CCcEEEEecCCeEEEEecccCcccccceeec----CCCceeEEEcCCCCEEEEEe-------------------cCcEE
Confidence             68999888877888887765433211 0111    23566899999987455542                   22455


Q ss_pred             EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242          185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      .+.-.+ ....+. -.-.+.++|++|+++...|.. .++.|+.|.+.+..+.......+..+-+..+++++||.+++++-
T Consensus       430 ~l~~~~-~~~~~~-~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D  506 (603)
T KOG0318|consen  430 LLQDQT-KVSSIP-IGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD  506 (603)
T ss_pred             EEecCC-cceeec-cccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence            554332 222222 234578999999998666655 55679999998765533333334455578899999998888776


Q ss_pred             cCCC
Q 018242          265 SRRK  268 (359)
Q Consensus       265 ~~~~  268 (359)
                      ..+.
T Consensus       507 a~rk  510 (603)
T KOG0318|consen  507 ASRK  510 (603)
T ss_pred             cCCc
Confidence            6665

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=98.45  E-value=5.6e-05  Score=67.21  Aligned_cols=217  Identities=13%  Similarity=0.131  Sum_probs=119.3

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE-----EecCCCeEEE
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC-----FNKTNGDLYI  112 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~-----~~~~~g~l~v  112 (359)
                      +++++|||+.+..+..+|.|..|||++++-.  .          +       .+.....-..+++     .++ ..+.++
T Consensus       162 cvawsPDgk~iASG~~dg~I~lwdpktg~~~--g----------~-------~l~gH~K~It~Lawep~hl~p-~~r~la  221 (480)
T KOG0271|consen  162 CVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--G----------R-------ALRGHKKWITALAWEPLHLVP-PCRRLA  221 (480)
T ss_pred             EEEECCCcchhhccccCCeEEEecCCCCCcc--c----------c-------cccCcccceeEEeecccccCC-Ccccee
Confidence            7899999998888999999999999987311  0          0       0111101122333     234 334444


Q ss_pred             EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +...+ .+..+|...++...... ..   -..+.-+.+..+|- ||-+                  +....|-.|+...|
T Consensus       222 s~skDg~vrIWd~~~~~~~~~ls-gH---T~~VTCvrwGG~gl-iySg------------------S~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  222 SSSKDGSVRIWDTKLGTCVRTLS-GH---TASVTCVRWGGEGL-IYSG------------------SQDRTIKVWRALDG  278 (480)
T ss_pred             cccCCCCEEEEEccCceEEEEec-cC---ccceEEEEEcCCce-EEec------------------CCCceEEEEEccch
Confidence            43333 47778887766433221 11   11334556666665 6655                  22233444444333


Q ss_pred             cEE-EEeCCCCCCceEEEc-----------------------------------cCCCEEEEEecCCCEEEEEEcCCCCC
Q 018242          192 QVT-VLLGNLSFPNGVALS-----------------------------------EDGNYILLAETTSCRILRYWLKTSKA  235 (359)
Q Consensus       192 ~~~-~~~~~~~~p~gia~~-----------------------------------~d~~~l~v~~~~~~~i~~~~~~~~~~  235 (359)
                      .+- .+..+....|.++++                                   +++.-.+|+.+++.+++.|+....+.
T Consensus       279 ~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  279 KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence            221 111222222333222                                   12122589999999999998543211


Q ss_pred             cceeEeecCCCCCCceEECCCCCEEE-EEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCc
Q 018242          236 GTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       236 ~~~~~~~~~~~~p~~i~~d~~G~lwv-~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      . ...........+.+.++|||++.+ |+++..      +..++ .+|+.+..+-.++..+..+....+.+
T Consensus       359 p-i~rmtgHq~lVn~V~fSPd~r~IASaSFDkS------VkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  359 P-ITRMTGHQALVNHVSFSPDGRYIASASFDKS------VKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             c-hhhhhchhhheeeEEECCCccEEEEeecccc------eeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence            0 011111223467799999996555 333333      55554 58999998888888888887776654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.44  E-value=0.00039  Score=59.53  Aligned_cols=179  Identities=11%  Similarity=0.116  Sum_probs=110.8

Q ss_pred             CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc-EEEEeC
Q 018242           46 EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-LLKVGP  124 (359)
Q Consensus        46 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~  124 (359)
                      .+++.+.++..+..|++....... .              .....+....+...++++++ +++..++...++ +..+|.
T Consensus        29 ~~l~sasrDk~ii~W~L~~dd~~~-G--------------~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   29 DILVSASRDKTIIVWKLTSDDIKY-G--------------VPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDL   92 (315)
T ss_pred             ceEEEcccceEEEEEEeccCcccc-C--------------ceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEe
Confidence            347788888999999886542111 0              00002233344566788888 777777655554 677899


Q ss_pred             CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC--CCC
Q 018242          125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN--LSF  202 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~  202 (359)
                      .+++.++... ..   -..+-.+++++|.+ -.++                 +++...+..++..++-...+..+  ...
T Consensus        93 ~~g~~t~~f~-GH---~~dVlsva~s~dn~-qivS-----------------GSrDkTiklwnt~g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   93 ATGESTRRFV-GH---TKDVLSVAFSTDNR-QIVS-----------------GSRDKTIKLWNTLGVCKYTIHEDSHREW  150 (315)
T ss_pred             cCCcEEEEEE-ec---CCceEEEEecCCCc-eeec-----------------CCCcceeeeeeecccEEEEEecCCCcCc
Confidence            9886554322 11   12456789999998 6665                 23345677777764433333333  234


Q ss_pred             CceEEEccCC-CEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242          203 PNGVALSEDG-NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       203 p~gia~~~d~-~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      .+-+.|+|.. +-.+++.+.+..+.+||++.-+..  ..+....+...-+++++||.+-+...
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGg  211 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGG  211 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCC
Confidence            5678888874 457888888999999998653221  12222334455689999998877643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.44  E-value=0.0008  Score=58.03  Aligned_cols=196  Identities=11%  Similarity=0.104  Sum_probs=120.5

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      |+.-+-+.--.++-+.+|.+.+..+..+|++..||.-|. +...++                     -...=....+++|
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---------------------l~s~WVMtCA~sP  107 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---------------------LPSSWVMTCAYSP  107 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---------------------cCceeEEEEEECC
Confidence            444455667789999999998889999999999998664 222221                     1111245788999


Q ss_pred             CCCeEEEEeC-CCc--EEEEeCC--CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          106 TNGDLYIADA-YFG--LLKVGPE--GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       106 ~~g~l~v~~~-~~~--i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                       .++...+.. .+.  ||.+..+  .+.+. +.....+ .-.+.....+-+|++ |..+ +                 ..
T Consensus       108 -Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~-v~r~l~g-HtgylScC~f~dD~~-ilT~-S-----------------GD  165 (343)
T KOG0286|consen  108 -SGNFVACGGLDNKCSIYPLSTRDAEGNVR-VSRELAG-HTGYLSCCRFLDDNH-ILTG-S-----------------GD  165 (343)
T ss_pred             -CCCeEEecCcCceeEEEecccccccccce-eeeeecC-ccceeEEEEEcCCCc-eEec-C-----------------CC
Confidence             777666533 332  4444322  11111 1111111 123555666767776 5443 2                 24


Q ss_pred             ceEEEEeCCCCcEEEE-eCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC
Q 018242          181 GRLMKYDPATKQVTVL-LGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  258 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~-~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  258 (359)
                      .....||.++++.... ..+..-.-++.+.| +++ .|++..-+..-..||+..+  ...+.|.....-.+.+.+=|+|.
T Consensus       166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~  242 (343)
T KOG0286|consen  166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGD  242 (343)
T ss_pred             ceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecccccccceEEEccCCC
Confidence            4677788887765543 33334456788888 776 7999999999999998654  33455544333356688888887


Q ss_pred             EEEEEecCCC
Q 018242          259 FWVGIHSRRK  268 (359)
Q Consensus       259 lwv~~~~~~~  268 (359)
                      -+++..+...
T Consensus       243 afatGSDD~t  252 (343)
T KOG0286|consen  243 AFATGSDDAT  252 (343)
T ss_pred             eeeecCCCce
Confidence            7776655543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.4e-05  Score=64.79  Aligned_cols=168  Identities=13%  Similarity=0.151  Sum_probs=109.8

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ...-+|+..|--..-.+|...|-+.....+..++.|..||....+-.                     ..-...+.| -.
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq---------------------g~l~~~~~p-i~  146 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ---------------------GLLNLSGRP-IA  146 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc---------------------eEEecCCCc-ce
Confidence            34455888876677779999998885667778889999998754110                     111122223 47


Q ss_pred             EEecCCCeEEEEeCCC-cEEEEeCCC---CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          102 CFNKTNGDLYIADAYF-GLLKVGPEG---GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~-~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ++|| .|-+++..... .|..||.+.   |.++.+.-  .......-++|.+++||++|.+++.                
T Consensus       147 AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~iLlsT~----------------  207 (311)
T KOG1446|consen  147 AFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSILLSTN----------------  207 (311)
T ss_pred             eECC-CCcEEEEecCCCeEEEEEecccCCCCceeEcc--CCCCccceeeeEEcCCCCEEEEEeC----------------
Confidence            8999 88888775544 577777653   33333221  1122345678999999998888843                


Q ss_pred             CCCceEEEEeCCCCcEEEEeC----CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          178 DKTGRLMKYDPATKQVTVLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~----~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                        .+.++.+|.=+|.+..-..    ....|-..+++||++. +++.+.+++|..|++..+
T Consensus       208 --~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  208 --ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             --CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCC
Confidence              3467888876676543222    2234557789999995 555667899999998543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.43  E-value=0.00017  Score=69.12  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=105.2

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...-.++++.++|+.+..+..++.|..||.........                   .+.........++|++ ++++.+
T Consensus       203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~-------------------~l~gH~~~v~~~~f~p-~g~~i~  262 (456)
T KOG0266|consen  203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK-------------------TLKGHSTYVTSVAFSP-DGNLLV  262 (456)
T ss_pred             ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-------------------EecCCCCceEEEEecC-CCCEEE
Confidence            44556899999999788889999999999843311110                   2223334468899999 556666


Q ss_pred             EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +... ..|..+|.++++.......    ....+..+++.++|+ +.++-                 ...+.|..||..++
T Consensus       263 Sgs~D~tvriWd~~~~~~~~~l~~----hs~~is~~~f~~d~~-~l~s~-----------------s~d~~i~vwd~~~~  320 (456)
T KOG0266|consen  263 SGSDDGTVRIWDVRTGECVRKLKG----HSDGISGLAFSPDGN-LLVSA-----------------SYDGTIRVWDLETG  320 (456)
T ss_pred             EecCCCcEEEEeccCCeEEEeeec----cCCceEEEEECCCCC-EEEEc-----------------CCCccEEEEECCCC
Confidence            6444 4588889998765433221    123577899999999 44442                 33567999999988


Q ss_pred             cEE--EEeCCCCCC---ceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          192 QVT--VLLGNLSFP---NGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       192 ~~~--~~~~~~~~p---~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...  ........+   .-++++|++++++.. ..++.+..|++...
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLRSG  366 (456)
T ss_pred             ceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEccCC
Confidence            732  222222333   678899999865555 56678888988643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.43  E-value=0.00021  Score=61.52  Aligned_cols=193  Identities=13%  Similarity=0.042  Sum_probs=117.2

Q ss_pred             CCCc--eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPE--SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~--~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...+  ..++.|.|+.+..+--++.-.+|+..+..-.         +.  -|   ...++....+......|.+ +++|.
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---------g~--~~---v~r~l~gHtgylScC~f~d-D~~il  160 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---------GN--VR---VSRELAGHTGYLSCCRFLD-DNHIL  160 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---------cc--ce---eeeeecCccceeEEEEEcC-CCceE
Confidence            3555  4468899994445555555556665532000         00  00   0002223334455666776 78887


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      .+........+|.++++......   + ....+..|.+.| ++| .||+-                 +-...-..||...
T Consensus       161 T~SGD~TCalWDie~g~~~~~f~---G-H~gDV~slsl~p~~~n-tFvSg-----------------~cD~~aklWD~R~  218 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQQTQVFH---G-HTGDVMSLSLSPSDGN-TFVSG-----------------GCDKSAKLWDVRS  218 (343)
T ss_pred             ecCCCceEEEEEcccceEEEEec---C-CcccEEEEecCCCCCC-eEEec-----------------ccccceeeeeccC
Confidence            76544457789999887654322   1 112455778888 899 88882                 2234466677665


Q ss_pred             CcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-C-CCCCCceEECCCCCEEEEEecC
Q 018242          191 KQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       191 ~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      +... .+..+-.-.|.+.|.|+|. -+++.++++....||+..+.  +...|.. . ......++++..|+|..+....
T Consensus       219 ~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d  294 (343)
T KOG0286|consen  219 GQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD  294 (343)
T ss_pred             cceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence            5544 3445556679999999997 79999999999999987542  2233332 1 1224668999999977765543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.41  E-value=0.00033  Score=67.09  Aligned_cols=189  Identities=15%  Similarity=0.194  Sum_probs=116.6

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.++.+.++|+.+..+..++.+..|+..+.+.....                  ...........++|++ ++...++.
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~------------------~l~~h~~~v~~~~fs~-d~~~l~s~  221 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR------------------ELSGHTRGVSDVAFSP-DGSYLLSG  221 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhc------------------cccccccceeeeEECC-CCcEEEEe
Confidence            3346788999997667777788888887544210000                  1112223356889999 67655554


Q ss_pred             CC-CcEEEEeCCCC-eE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 AY-FGLLKVGPEGG-LA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~~-~~i~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      .. ..|..+|.+.+ .. +.+..     ....++.++++++|+ +.++-                 +..+.|..||..++
T Consensus       222 s~D~tiriwd~~~~~~~~~~l~g-----H~~~v~~~~f~p~g~-~i~Sg-----------------s~D~tvriWd~~~~  278 (456)
T KOG0266|consen  222 SDDKTLRIWDLKDDGRNLKTLKG-----HSTYVTSVAFSPDGN-LLVSG-----------------SDDGTVRIWDVRTG  278 (456)
T ss_pred             cCCceEEEeeccCCCeEEEEecC-----CCCceEEEEecCCCC-EEEEe-----------------cCCCcEEEEeccCC
Confidence            33 45777888333 32 22221     123568999999998 77762                 34678999999887


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecC
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      +..... .+-....++++.+|++. +++.+.++.|..||+........+.+..  .+.....+.++++|...+.....
T Consensus       279 ~~~~~l~~hs~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d  355 (456)
T KOG0266|consen  279 ECVRKLKGHSDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD  355 (456)
T ss_pred             eEEEeeeccCCceEEEEECCCCCE-EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence            665543 44456689999999985 4555778999999986543110112222  11112567889999744444443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.40  E-value=4.9e-05  Score=73.04  Aligned_cols=206  Identities=17%  Similarity=0.153  Sum_probs=131.4

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .+-.++.+...|+.++.++-+|.+..||.+.. .+++|..|                    .......+++|+ .|.|.+
T Consensus       393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--------------------~p~QfscvavD~-sGelV~  451 (893)
T KOG0291|consen  393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--------------------EPIQFSCVAVDP-SGELVC  451 (893)
T ss_pred             CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC--------------------CceeeeEEEEcC-CCCEEE
Confidence            34557889999998999999999999999864 25555311                    112235788898 888888


Q ss_pred             EeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC--
Q 018242          113 ADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP--  188 (359)
Q Consensus       113 ~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~--  188 (359)
                      +...+  .|+.++.++|+...+..   +. ..-+.++.+++.|. +.++-                 +++-.|-.||.  
T Consensus       452 AG~~d~F~IfvWS~qTGqllDiLs---GH-EgPVs~l~f~~~~~-~LaS~-----------------SWDkTVRiW~if~  509 (893)
T KOG0291|consen  452 AGAQDSFEIFVWSVQTGQLLDILS---GH-EGPVSGLSFSPDGS-LLASG-----------------SWDKTVRIWDIFS  509 (893)
T ss_pred             eeccceEEEEEEEeecCeeeehhc---CC-CCcceeeEEccccC-eEEec-----------------cccceEEEEEeec
Confidence            76554  59999999998654332   21 12456899999999 66652                 23334554443  


Q ss_pred             CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC-CcceeE-------------ee-c---CCCCCCc
Q 018242          189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-AGTIEI-------------VA-Q---LPGFPDN  250 (359)
Q Consensus       189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~-~~~~~~-------------~~-~---~~~~p~~  250 (359)
                      ..++++++. ...-.-+++|.|||+.+-|+. .++.|..||..... .+..+.             +. .   .......
T Consensus       510 s~~~vEtl~-i~sdvl~vsfrPdG~elaVaT-ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt  587 (893)
T KOG0291|consen  510 SSGTVETLE-IRSDVLAVSFRPDGKELAVAT-LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT  587 (893)
T ss_pred             cCceeeeEe-eccceeEEEEcCCCCeEEEEE-ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE
Confidence            334565543 223356889999999877764 56789999975321 111110             10 0   0122344


Q ss_pred             eEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCc
Q 018242          251 IKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       251 i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      |+.++||...++...+..     +..++ +++.+++++.+
T Consensus       588 i~ySaDG~~IlAgG~sn~-----iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  588 ICYSADGKCILAGGESNS-----ICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             EEEcCCCCEEEecCCccc-----EEEEECchhheeeeEEe
Confidence            888999987776655553     55554 57777776543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.39  E-value=0.00033  Score=59.42  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=110.3

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .+.-+++++..+|+.+..+..++.+..|+.+...+..-.                  ...........++.++....+++
T Consensus        20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~------------------~~~gh~~svdql~w~~~~~d~~a   81 (313)
T KOG1407|consen   20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL------------------VYRGHTDSVDQLCWDPKHPDLFA   81 (313)
T ss_pred             hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh------------------cccCCCcchhhheeCCCCCcceE
Confidence            456679999999998999999999999988765322110                  11112223446778876777777


Q ss_pred             EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +... ..|.++|...++....... .+    .-..+.+.|+|+++-++                  .+...|..+|..+.
T Consensus        82 tas~dk~ir~wd~r~~k~~~~i~~-~~----eni~i~wsp~g~~~~~~------------------~kdD~it~id~r~~  138 (313)
T KOG1407|consen   82 TASGDKTIRIWDIRSGKCTARIET-KG----ENINITWSPDGEYIAVG------------------NKDDRITFIDARTY  138 (313)
T ss_pred             EecCCceEEEEEeccCcEEEEeec-cC----cceEEEEcCCCCEEEEe------------------cCcccEEEEEeccc
Confidence            6544 4588889887765433221 11    11247889999955554                  22335666776533


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCc---eEECCCCCEEEEE
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN---IKRSPRGGFWVGI  263 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~---i~~d~~G~lwv~~  263 (359)
                      +...-.+-....+-+++..+++ +++..++.++|......  .+   +.+..+...|.+   |.+||+|+.+.+.
T Consensus       139 ~~~~~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsyp--sL---kpv~si~AH~snCicI~f~p~GryfA~G  207 (313)
T KOG1407|consen  139 KIVNEEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYP--SL---KPVQSIKAHPSNCICIEFDPDGRYFATG  207 (313)
T ss_pred             ceeehhcccceeeeeeecCCCC-EEEEecCCceEEEEecc--cc---ccccccccCCcceEEEEECCCCceEeec
Confidence            3221111123356788876665 78887788888776532  22   222223334544   7889999866633

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=98.39  E-value=7.5e-06  Score=74.56  Aligned_cols=214  Identities=12%  Similarity=0.130  Sum_probs=134.6

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      |-..+--..-.++.+..+|..+..+..+..|-.||.+|+....                    .+ .....|..+-+.|+
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~--------------------~f-~~~~~~~cvkf~pd  310 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS--------------------RF-HLDKVPTCVKFHPD  310 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE--------------------EE-ecCCCceeeecCCC
Confidence            3333333344588999999988888999999999999985332                    11 12234677788897


Q ss_pred             CCeEEEEeC-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADA-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +.++|++.. .+.|..+|..++++.+-+.    .....++.+.+-++|+ -+|+.+.                 .+.+..
T Consensus       311 ~~n~fl~G~sd~ki~~wDiRs~kvvqeYd----~hLg~i~~i~F~~~g~-rFissSD-----------------dks~ri  368 (503)
T KOG0282|consen  311 NQNIFLVGGSDKKIRQWDIRSGKVVQEYD----RHLGAILDITFVDEGR-RFISSSD-----------------DKSVRI  368 (503)
T ss_pred             CCcEEEEecCCCcEEEEeccchHHHHHHH----hhhhheeeeEEccCCc-eEeeecc-----------------CccEEE
Confidence            768777654 4469999999887532111    1345678899999999 6666332                 234555


Q ss_pred             EeCCCCcEEE-Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-CCcceeEeec--CCCCCCceEECCCCCEE
Q 018242          186 YDPATKQVTV-LL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQ--LPGFPDNIKRSPRGGFW  260 (359)
Q Consensus       186 ~d~~~~~~~~-~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~p~~i~~d~~G~lw  260 (359)
                      |+-....... +. .....---+++.|.++ .+.+.+-+++|..|..... +....+.|..  .+|++-.+.+++||...
T Consensus       369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l  447 (503)
T KOG0282|consen  369 WENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL  447 (503)
T ss_pred             EEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence            5543322111 11 1112223567778887 5777788899999986543 3333444543  57888889999999877


Q ss_pred             EEEecCCCccccccccCCc-cceeeecCCc
Q 018242          261 VGIHSRRKGISKLVLSFPW-IGNVLIKLPI  289 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  289 (359)
                      +.....+.     +..++. .-+++..+..
T Consensus       448 ~SGdsdG~-----v~~wdwkt~kl~~~lka  472 (503)
T KOG0282|consen  448 CSGDSDGK-----VNFWDWKTTKLVSKLKA  472 (503)
T ss_pred             EeecCCcc-----EEEeechhhhhhhcccc
Confidence            75555554     555553 4445555443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.38  E-value=5.9e-06  Score=75.54  Aligned_cols=166  Identities=20%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             CcceEEEEecCCCeEEEEeC--C------------CcEEEEeCCCCeEEEEeecC----------CCccccccceEEEeC
Q 018242           96 GRPLGLCFNKTNGDLYIADA--Y------------FGLLKVGPEGGLATAVATQS----------EGIPFRFCNSLDIDQ  151 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~--~------------~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~d~  151 (359)
                      +...+|+|++ +|.||++..  .            +.|+|+++++....  ....          -...+..|.++++|+
T Consensus       114 H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~--dnP~~~~~~~~~~i~A~GlRN~~~~~~d~  190 (331)
T PF07995_consen  114 HNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA--DNPFVGDDGADSEIYAYGLRNPFGLAFDP  190 (331)
T ss_dssp             S-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T--TSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred             CCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCC--CCccccCCCceEEEEEeCCCccccEEEEC
Confidence            3456799999 889999852  1            13888887653100  0000          011356889999999


Q ss_pred             C-CCEEEEEeCCCccccccceeeeeecCCCceEEE----------E---eCCCCcEEE--EeCCCCCCceEEEccCC---
Q 018242          152 S-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK----------Y---DPATKQVTV--LLGNLSFPNGVALSEDG---  212 (359)
Q Consensus       152 ~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~----------~---d~~~~~~~~--~~~~~~~p~gia~~~d~---  212 (359)
                      . |+ ||++|.+.+..  +....+..+...|--++          +   .........  ....-..|.|+.+....   
T Consensus       191 ~tg~-l~~~d~G~~~~--dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp  267 (331)
T PF07995_consen  191 NTGR-LWAADNGPDGW--DEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFP  267 (331)
T ss_dssp             TTTE-EEEEEE-SSSS--EEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSG
T ss_pred             CCCc-EEEEccCCCCC--cEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCc
Confidence            9 88 99998664321  00011101110010000          0   000000011  11222457788876432   


Q ss_pred             ---CEEEEEecCCCEEEEEEcCCC-CCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242          213 ---NYILLAETTSCRILRYWLKTS-KAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       213 ---~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                         ..+++++....+|+++.++.+ .....+.+.. ....|.++++++||.||+++...+
T Consensus       268 ~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G  327 (331)
T PF07995_consen  268 EYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG  327 (331)
T ss_dssp             GGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred             cccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence               248899988899999998644 2333333333 444688999999999999987544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.38  E-value=0.0013  Score=67.68  Aligned_cols=162  Identities=10%  Similarity=-0.001  Sum_probs=94.5

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-e
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-D  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~  114 (359)
                      -.+++++++|+++.++..++.|..|+..+.......        ...|    ..... .......+++.+..+...++ .
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--------~~~~----~~~~~-~~~~v~~l~~~~~~~~~las~~  552 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--------IHYP----VVELA-SRSKLSGICWNSYIKSQVASSN  552 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--------cccc----eEEec-ccCceeeEEeccCCCCEEEEEe
Confidence            457899999997778888999999997542000000        0000    00111 11234567777644554444 4


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+.|..+|..+++......   + ....+..+++++ +++ ++++-                 +..+.|..||..++..
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~---~-H~~~V~~l~~~p~~~~-~L~Sg-----------------s~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMK---E-HEKRVWSIDYSSADPT-LLASG-----------------SDDGSVKLWSINQGVS  610 (793)
T ss_pred             CCCeEEEEECCCCeEEEEec---C-CCCCEEEEEEcCCCCC-EEEEE-----------------cCCCEEEEEECCCCcE
Confidence            44457788988765432211   1 123577899986 677 55552                 3356788899876554


Q ss_pred             EEEeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TVLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ............+.+.+ +++ .+++...++.|..||+...
T Consensus       611 ~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~  650 (793)
T PLN00181        611 IGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRNP  650 (793)
T ss_pred             EEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCC
Confidence            33222223345666644 565 5666778889999998643

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.36  E-value=2.4e-06  Score=60.82  Aligned_cols=81  Identities=23%  Similarity=0.337  Sum_probs=57.7

Q ss_pred             eEEEeCCCCEEEEEeCCCccccccc--eeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242          146 SLDIDQSTGIIYFTDSSSQFQRRNH--ISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       146 ~l~~d~~g~~l~v~d~~~~~~~~~~--~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                      +|+.-...+ +|+|+....  ...+  ..|...+...+.|..+|++  +.+.+..++..|+||+++|+++.+||++...+
T Consensus         2 DIvavG~~s-Fy~TNDhyf--~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~   76 (86)
T PF01731_consen    2 DIVAVGPDS-FYVTNDHYF--TDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAH   76 (86)
T ss_pred             CEEEECcCc-EEEECchhh--CcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence            444444445 888865421  1111  1122334456789999985  67777888999999999999999999999999


Q ss_pred             EEEEEEcC
Q 018242          224 RILRYWLK  231 (359)
Q Consensus       224 ~i~~~~~~  231 (359)
                      .|.+|..+
T Consensus        77 ~I~vy~~~   84 (86)
T PF01731_consen   77 SIHVYKRH   84 (86)
T ss_pred             eEEEEEec
Confidence            99999864

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.36  E-value=0.0008  Score=63.68  Aligned_cols=143  Identities=15%  Similarity=0.098  Sum_probs=84.5

Q ss_pred             eEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 LGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ....+++++..|+++...   ..|+.++..+++.+.+.. ..    .....+.++|||++|+++...             
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~----~~~~~~~~spDg~~l~~~~~~-------------  254 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP----GMNGAPAFSPDGSKLAVSLSK-------------  254 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC----CCccceEECCCCCEEEEEECC-------------
Confidence            345678855556555433   248899998886554432 11    123457899999877776321             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                        .....|+.++..++..+.+..........++++|++.++++....  ..|+.+++.+.+   .+.+...........+
T Consensus       255 --~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~  329 (417)
T TIGR02800       255 --DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSW  329 (417)
T ss_pred             --CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEE
Confidence              112369999988776665533222233567899999876654432  378888876432   2222222223456788


Q ss_pred             CCCCCEEE-EEe
Q 018242          254 SPRGGFWV-GIH  264 (359)
Q Consensus       254 d~~G~lwv-~~~  264 (359)
                      +++|+..+ +..
T Consensus       330 spdg~~i~~~~~  341 (417)
T TIGR02800       330 SPDGDLIAFVHR  341 (417)
T ss_pred             CCCCCEEEEEEc
Confidence            88887444 443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.35  E-value=0.00032  Score=64.65  Aligned_cols=216  Identities=15%  Similarity=0.117  Sum_probs=123.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .--+++|.++|. ..++..+|.|..|++.+..+..-                   .. ...+...+++... +|.|.-+.
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~-------------------~~-aH~ggv~~L~~lr-~GtllSGg  305 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ-------------------VH-AHDGGVFSLCMLR-DGTLLSGG  305 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE-------------------ee-ecCCceEEEEEec-CccEeecC
Confidence            444899999999 88888889999999988754431                   11 2223455677777 88887754


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ....|..+|-+-.+.+..  ..+ .....+..++.. .+. +||+.+.                  ..|..=+.+++-..
T Consensus       306 KDRki~~Wd~~y~k~r~~--elP-e~~G~iRtv~e~-~~d-i~vGTtr------------------N~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  306 KDRKIILWDDNYRKLRET--ELP-EQFGPIRTVAEG-KGD-ILVGTTR------------------NFILQGTLENGFTL  362 (626)
T ss_pred             ccceEEeccccccccccc--cCc-hhcCCeeEEecC-CCc-EEEeecc------------------ceEEEeeecCCceE
Confidence            334577776322222111  111 123344455543 344 8998554                  23444444433333


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCCccccc
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGISKL  273 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~  273 (359)
                      .+......-.|+|..|+.+ +|++...+..+..|+  ..+.    .+.. ....-....+++.|-+-+++..++.     
T Consensus       363 ~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~----~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w-----  430 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKL----EWTKIIEDPAECADFHPSGVVAVGTATGRW-----  430 (626)
T ss_pred             EEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCce----eEEEEecCceeEeeccCcceEEEeeccceE-----
Confidence            3344444667999999876 688888888888887  2222    2222 1111245778888866666665442     


Q ss_pred             cccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEE
Q 018242          274 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI  320 (359)
Q Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  320 (359)
                      ++...++..++.. ...           .++ -.+++|+|+|..+..
T Consensus       431 ~V~d~e~~~lv~~-~~d-----------~~~-ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  431 FVLDTETQDLVTI-HTD-----------NEQ-LSVVRYSPDGAFLAV  464 (626)
T ss_pred             EEEecccceeEEE-Eec-----------CCc-eEEEEEcCCCCEEEE
Confidence            4444444333321 110           122 457888888877654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=0.00088  Score=63.59  Aligned_cols=183  Identities=14%  Similarity=0.077  Sum_probs=99.8

Q ss_pred             eEEEccCCC---eeEEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           38 SLAFDALGE---GPYTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        38 ~i~~~~~G~---~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...++|||+   ++|++..+  ..|+..+..+++.+.+.                     ...+......++|++..|.+
T Consensus       189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------------------~~~g~~~~p~wSPDG~~Laf  247 (428)
T PRK01029        189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------------------ALQGNQLMPTFSPRKKLLAF  247 (428)
T ss_pred             cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------------------cCCCCccceEECCCCCEEEE
Confidence            457999986   34566554  47999998877544432                     11122334678885556655


Q ss_pred             EeCC-C--cEEE--EeCCC---CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          113 ADAY-F--GLLK--VGPEG---GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       113 ~~~~-~--~i~~--~~~~~---~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      +... +  .++.  ++..+   ++.+.+...    .........++|||++|+++...               .....||
T Consensus       248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly  308 (428)
T PRK01029        248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPSFSPDGTRLVFVSNK---------------DGRPRIY  308 (428)
T ss_pred             EECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeEECCCCCEEEEEECC---------------CCCceEE
Confidence            4322 1  3444  45443   233333211    11122356899999966665221               1122578


Q ss_pred             EEeCC--CCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-E
Q 018242          185 KYDPA--TKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-F  259 (359)
Q Consensus       185 ~~d~~--~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l  259 (359)
                      .++.+  ++..+.+..........+++|||+.++++....  ..|+++++++.+   .+.+........+..++++|+ |
T Consensus       309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~~~~~~~p~wSpDG~~L  385 (428)
T PRK01029        309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTSPENKESPSWAIDSLHL  385 (428)
T ss_pred             EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCCCCCccceEECCCCCEE
Confidence            77654  233333322222335678999999877765443  479999876542   222222222345678888886 4


Q ss_pred             EEEE
Q 018242          260 WVGI  263 (359)
Q Consensus       260 wv~~  263 (359)
                      +++.
T Consensus       386 ~f~~  389 (428)
T PRK01029        386 VYSA  389 (428)
T ss_pred             EEEE
Confidence            4443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.32  E-value=0.0019  Score=57.19  Aligned_cols=108  Identities=18%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CcceEEEEecCCCeEEEEeCCCc--EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242           96 GRPLGLCFNKTNGDLYIADAYFG--LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      .+.++++.+|.+....+....-|  .+++|..+++........++.  .+--.-++++||++||.++...          
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd~----------   72 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTENDY----------   72 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecccc----------
Confidence            34567888885555444333333  788999988765543322221  1222468999999899885431          


Q ss_pred             eeecCCCceEEEEeCCCCcEE---EEeCCCCCCceEEEccCCCEEEEEe
Q 018242          174 ILSGDKTGRLMKYDPATKQVT---VLLGNLSFPNGVALSEDGNYILLAE  219 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~---~~~~~~~~p~gia~~~d~~~l~v~~  219 (359)
                         .+..|.|.+||... .++   .+......|..+.+.|||++|.|++
T Consensus        73 ---~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   73 ---ETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             ---CCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence               13457788899873 333   3445667899999999999899986

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=0.00064  Score=64.68  Aligned_cols=138  Identities=16%  Similarity=0.123  Sum_probs=81.0

Q ss_pred             ceEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           98 PLGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      .....++|++..|..+...+   .|+.+|.++++.+.+.. ..+    ....++++|||++|.++...            
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPDG~~La~~~~~------------  268 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPDGSRLAFASSK------------  268 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCCCCEEEEEEec------------
Confidence            34677899555565543322   48899998876554432 111    12357999999967665211            


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIK  252 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  252 (359)
                         ...-.||.+|.+++..+.+..........+++|||+.++++....+  .|+.++..+..   .+.+ ...+  .+..
T Consensus       269 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~--~~~~  339 (429)
T PRK01742        269 ---DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRG--YSAQ  339 (429)
T ss_pred             ---CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCC--CCcc
Confidence               1122589999887776665443334567899999998776654434  55555543321   1222 2111  3466


Q ss_pred             ECCCCCEEE
Q 018242          253 RSPRGGFWV  261 (359)
Q Consensus       253 ~d~~G~lwv  261 (359)
                      ++++|+..+
T Consensus       340 ~SpDG~~ia  348 (429)
T PRK01742        340 ISADGKTLV  348 (429)
T ss_pred             CCCCCCEEE
Confidence            788887443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=8.2e-05  Score=67.64  Aligned_cols=209  Identities=8%  Similarity=0.038  Sum_probs=125.7

Q ss_pred             eEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           38 SLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        38 ~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..+|.|+|. +++++....-+|.||..+.++..+..+.               ..+.  ....-..+++++..|.+....
T Consensus       262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~---------------g~e~--~~~e~FeVShd~~fia~~G~~  324 (514)
T KOG2055|consen  262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY---------------GVEE--KSMERFEVSHDSNFIAIAGNN  324 (514)
T ss_pred             eeeecCCCceEEEecccceEEEEeeccccccccccCCC---------------Cccc--chhheeEecCCCCeEEEcccC
Confidence            667888998 8889888899999999988766654211               1110  012235567744444443333


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +-|..+..+++++..-.. +    ...+.+++++.+|+.||++                  ..+|.||.+|.....+...
T Consensus       325 G~I~lLhakT~eli~s~K-i----eG~v~~~~fsSdsk~l~~~------------------~~~GeV~v~nl~~~~~~~r  381 (514)
T KOG2055|consen  325 GHIHLLHAKTKELITSFK-I----EGVVSDFTFSSDSKELLAS------------------GGTGEVYVWNLRQNSCLHR  381 (514)
T ss_pred             ceEEeehhhhhhhhheee-e----ccEEeeEEEecCCcEEEEE------------------cCCceEEEEecCCcceEEE
Confidence            348888877776422111 1    1356788999999988887                  3357899999987655533


Q ss_pred             e--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC-cceeEe---ecCCCCCCceEECCCCCEEE-EEecCCCc
Q 018242          197 L--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIV---AQLPGFPDNIKRSPRGGFWV-GIHSRRKG  269 (359)
Q Consensus       197 ~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~---~~~~~~p~~i~~d~~G~lwv-~~~~~~~~  269 (359)
                      .  .+.-.-..+|++.++. ++.+++..+-|-.|+.+.-.. +..+..   .++..-...|.+.+++.|.. ++......
T Consensus       382 f~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna  460 (514)
T KOG2055|consen  382 FVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA  460 (514)
T ss_pred             EeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence            2  3333446678888887 677788888888888543211 112222   12333356789999887665 55443221


Q ss_pred             cccccccCCccceeeecCCcc
Q 018242          270 ISKLVLSFPWIGNVLIKLPID  290 (359)
Q Consensus       270 ~~~~~~~~~~~g~~~~~~~~~  290 (359)
                       +. ++. -|.-.++.++|..
T Consensus       461 -lr-LVH-vPS~TVFsNfP~~  478 (514)
T KOG2055|consen  461 -LR-LVH-VPSCTVFSNFPTS  478 (514)
T ss_pred             -eE-EEe-ccceeeeccCCCC
Confidence             11 121 2345566667664

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.29  E-value=0.00055  Score=64.35  Aligned_cols=213  Identities=13%  Similarity=0.056  Sum_probs=105.6

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      ++.+++....+.|+.+|.++|+..-..... +.........-++. +|. +|++.                  ..+.++.
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~-v~~~~------------------~~g~v~a  219 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG-AIVGG------------------DNGRVSA  219 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE-EEEEc------------------CCCEEEE
Confidence            678888876666999999998864322211 00000000111222 344 77762                  2457888


Q ss_pred             EeCCCCcEEEEeCCCCCCc---------eEEEcc--CCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEE
Q 018242          186 YDPATKQVTVLLGNLSFPN---------GVALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKR  253 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~---------gia~~~--d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~  253 (359)
                      +|+++++....... ..|.         .+..+|  .++.+|+.. .++.++.+|...++    ..+.. ... +..+..
T Consensus       220 ~d~~~G~~~W~~~~-~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~----~~W~~~~~~-~~~~~~  292 (394)
T PRK11138        220 VLMEQGQLIWQQRI-SQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQ----IVWKREYGS-VNDFAV  292 (394)
T ss_pred             EEccCChhhheecc-ccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCC----EEEeecCCC-ccCcEE
Confidence            88887765432110 0110         011111  234588776 45789999976542    22222 222 233444


Q ss_pred             CCCCCEEEEEecCCCccccccccC-CccceeeecCCcc------ce-eeeeecccccCcceEEEEECC-CCCEEEEEEcc
Q 018242          254 SPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPID------IV-KIHSSLVKLSGNGGMAMRISE-QGNVLEILEEI  324 (359)
Q Consensus       254 d~~G~lwv~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~  324 (359)
                      + +|++|+++..+.      +..+ ..+|+.+.+.+..      .. ......+-...+ +.++++|. +|+++..+...
T Consensus       293 ~-~~~vy~~~~~g~------l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~-G~l~~ld~~tG~~~~~~~~~  364 (394)
T PRK11138        293 D-GGRIYLVDQNDR------VYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE-GYLHWINREDGRFVAQQKVD  364 (394)
T ss_pred             E-CCEEEEEcCCCe------EEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEEcC
Confidence            2 467887765433      3333 3466655433211      00 011111222333 45666774 46666555332


Q ss_pred             CCceeeceEEEEEeCCEEEEecCCCCeEEEEcCC
Q 018242          325 GRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       325 ~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                      .+.   ..+.....+++||+++. +..|..++++
T Consensus       365 ~~~---~~s~P~~~~~~l~v~t~-~G~l~~~~~~  394 (394)
T PRK11138        365 SSG---FLSEPVVADDKLLIQAR-DGTVYAITRP  394 (394)
T ss_pred             CCc---ceeCCEEECCEEEEEeC-CceEEEEeCC
Confidence            111   11222335889999986 6678777653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.29  E-value=0.00024  Score=65.04  Aligned_cols=177  Identities=15%  Similarity=0.178  Sum_probs=97.0

Q ss_pred             ccCCCeeEEecCCCEEEEEEcCCcceEEEeec-CCCCCCCCCCcccccccccccCCcceE-EE-EecCCCeEEEEeCCCc
Q 018242           42 DALGEGPYTGVSDGRIIKWHQDQRRWLHFART-SPNRDGCEGAYEYDHAAKEHICGRPLG-LC-FNKTNGDLYIADAYFG  118 (359)
Q Consensus        42 ~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g-i~-~~~~~g~l~v~~~~~~  118 (359)
                      ..||+++..... |-|+.+||.+.+.+.+.+. +..+.    +.++   .+    ..|.. +. +...+|++++....+.
T Consensus       275 nsDGkrIvFq~~-GdIylydP~td~lekldI~lpl~rk----~k~~---k~----~~pskyledfa~~~Gd~ia~VSRGk  342 (668)
T COG4946         275 NSDGKRIVFQNA-GDIYLYDPETDSLEKLDIGLPLDRK----KKQP---KF----VNPSKYLEDFAVVNGDYIALVSRGK  342 (668)
T ss_pred             CCCCcEEEEecC-CcEEEeCCCcCcceeeecCCccccc----cccc---cc----cCHHHhhhhhccCCCcEEEEEecCc
Confidence            456775555444 7899999999877776543 11111    0000   01    11110 00 2222455444433444


Q ss_pred             EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc-eEEEEeCCCCcEEEEe
Q 018242          119 LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG-RLMKYDPATKQVTVLL  197 (359)
Q Consensus       119 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~~~~~~~~  197 (359)
                      ...+++..+.+.++....   . ..-..+..++++  +.+++.                  .| .+..+|.++++++.+.
T Consensus       343 aFi~~~~~~~~iqv~~~~---~-VrY~r~~~~~e~--~vigt~------------------dgD~l~iyd~~~~e~kr~e  398 (668)
T COG4946         343 AFIMRPWDGYSIQVGKKG---G-VRYRRIQVDPEG--DVIGTN------------------DGDKLGIYDKDGGEVKRIE  398 (668)
T ss_pred             EEEECCCCCeeEEcCCCC---c-eEEEEEccCCcc--eEEecc------------------CCceEEEEecCCceEEEee
Confidence            555555555433322110   0 011234455553  555532                  22 5778888889988888


Q ss_pred             CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCC
Q 018242          198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG  258 (359)
Q Consensus       198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~  258 (359)
                      .++.....+..++||+.+.+++ ....|+++|++.++.   +.... ..++.-++.+.++++
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv---~~idkS~~~lItdf~~~~nsr  456 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSR  456 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCe---eEecccccceeEEEEEcCCce
Confidence            8888888999999999766665 667899999876532   22211 223444556656554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.29  E-value=0.00057  Score=57.22  Aligned_cols=197  Identities=9%  Similarity=0.075  Sum_probs=120.4

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..+.+.-||+...++-.+..|..|||..+....                    .....+.+....+...++..+--+...
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--------------------tYsghG~EVlD~~~s~Dnskf~s~GgD   80 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--------------------TYSGHGHEVLDAALSSDNSKFASCGGD   80 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccceee--------------------eecCCCceeeeccccccccccccCCCC
Confidence            366788899955566667889999998774322                    112233444555555533333333323


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      ..++.+|..+|++.+..   .+ ....+|.+.+..+.. +.++                 ++....+-.||=.+..++++
T Consensus        81 k~v~vwDV~TGkv~Rr~---rg-H~aqVNtV~fNeesS-Vv~S-----------------gsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   81 KAVQVWDVNTGKVDRRF---RG-HLAQVNTVRFNEESS-VVAS-----------------GSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             ceEEEEEcccCeeeeec---cc-ccceeeEEEecCcce-EEEe-----------------ccccceeEEEEcccCCCCcc
Confidence            35999999999864322   11 224678899988887 6666                 23455788888776666654


Q ss_pred             e---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCC-EEEEEecCCCccc
Q 018242          197 L---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIHSRRKGIS  271 (359)
Q Consensus       197 ~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~-lwv~~~~~~~~~~  271 (359)
                      +   ........|.+.  + +.+++.+.++++.+||+..++.     ..+ ++.....+.+.++|+ ..++..++.    
T Consensus       139 Qildea~D~V~Si~v~--~-heIvaGS~DGtvRtydiR~G~l-----~sDy~g~pit~vs~s~d~nc~La~~l~st----  206 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDVA--E-HEIVAGSVDGTVRTYDIRKGTL-----SSDYFGHPITSVSFSKDGNCSLASSLDST----  206 (307)
T ss_pred             chhhhhcCceeEEEec--c-cEEEeeccCCcEEEEEeeccee-----ehhhcCCcceeEEecCCCCEEEEeeccce----
Confidence            3   112233344443  3 3789999999999999865422     222 222236689999998 455554432    


Q ss_pred             cccccCC-ccceeeecCCc
Q 018242          272 KLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       272 ~~~~~~~-~~g~~~~~~~~  289 (359)
                        +...+ .+|++++....
T Consensus       207 --lrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  207 --LRLLDKETGKLLKSYKG  223 (307)
T ss_pred             --eeecccchhHHHHHhcc
Confidence              55555 47888876544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.26  E-value=0.00024  Score=63.90  Aligned_cols=189  Identities=13%  Similarity=0.013  Sum_probs=116.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEE--cCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..-+-+.++++|+.|..++.+.....|.  .+.. ++...                  ...........|.++|++..|.
T Consensus       225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~------------------tlvgh~~~V~yi~wSPDdryLl  285 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKK------------------TLVGHSQPVSYIMWSPDDRYLL  285 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeee------------------eeecccCceEEEEECCCCCeEE
Confidence            4556788999999677777776555554  3332 22211                  2222223356788999777777


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      .+.....+.++|..+|...+.....   ....+...++-|||. =+|+                 ++....++.+|.+++
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~-~~V~-----------------Gs~dr~i~~wdlDgn  344 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGF-RFVT-----------------GSPDRTIIMWDLDGN  344 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccC---cCCCcceeEEccCCc-eeEe-----------------cCCCCcEEEecCCcc
Confidence            7654445888899998866544322   123567789999998 4555                 234567999998854


Q ss_pred             cEEEEeCCCC--CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          192 QVTVLLGNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       192 ~~~~~~~~~~--~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ... -..+..  ....+++++||++++... .+..|..|+....  ..+... ........+.++.+|++...+....
T Consensus       345 ~~~-~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~--~dr~li-se~~~its~~iS~d~k~~LvnL~~q  417 (519)
T KOG0293|consen  345 ILG-NWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREAR--VDRGLI-SEEQPITSFSISKDGKLALVNLQDQ  417 (519)
T ss_pred             hhh-cccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhh--hhhccc-cccCceeEEEEcCCCcEEEEEcccC
Confidence            322 222322  346899999999888776 4457777775321  111111 1122245678888998777666544

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=98.23  E-value=0.00059  Score=60.90  Aligned_cols=152  Identities=15%  Similarity=0.197  Sum_probs=96.5

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-eCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DAY  116 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~~  116 (359)
                      ++.|.|+|..+..+..+..+..||+++..-..                    ......+=...++++| ||...++ ...
T Consensus       120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------------------t~KgH~~WVlcvawsP-Dgk~iASG~~d  178 (480)
T KOG0271|consen  120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------------------TCKGHKNWVLCVAWSP-DGKKIASGSKD  178 (480)
T ss_pred             EEEecCCCceEEecCCCceEEeeccCCCCcce--------------------eecCCccEEEEEEECC-CcchhhccccC
Confidence            78899999989999999999999999862110                    1222223356788999 6665444 444


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEe-----CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-----QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-----~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +.|..+|+++|+-  +.....+ ....+.+|++.     |..+ ...+                 .+..|.+..+|...+
T Consensus       179 g~I~lwdpktg~~--~g~~l~g-H~K~It~Lawep~hl~p~~r-~las-----------------~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQ--IGRALRG-HKKWITALAWEPLHLVPPCR-RLAS-----------------SSKDGSVRIWDTKLG  237 (480)
T ss_pred             CeEEEecCCCCCc--ccccccC-cccceeEEeecccccCCCcc-ceec-----------------ccCCCCEEEEEccCc
Confidence            5699999998863  2222222 11245566655     4444 3333                 345778999998766


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...... .+.....-+.+.-+|  ++.+.+.+.+|..|+...+
T Consensus       238 ~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG  278 (480)
T KOG0271|consen  238 TCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDG  278 (480)
T ss_pred             eEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccch
Confidence            655443 333334455554444  7777888899999987553

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.23  E-value=0.00013  Score=70.26  Aligned_cols=157  Identities=10%  Similarity=0.002  Sum_probs=96.6

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCC----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSD----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      ...+.+++  .|+.+.++++|+.+|+++.+    ..+...+.....+..+-                  .+..      .
T Consensus       228 ~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf------------------ni~~------i  281 (635)
T PRK02888        228 AWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF------------------NIAR------I  281 (635)
T ss_pred             EEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE------------------chHH------H
Confidence            34677775  99999999999989988743    23333333222111100                  0000      0


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCC-----CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          101 LCFNKTNGDLYIADAYFGLLKVGPEG-----GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      -.+.+++...|+.  .+.+..+|..+     .++..+...     ...|+++.++|||+++|++.-              
T Consensus       282 ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-----GKsPHGV~vSPDGkylyVank--------------  340 (635)
T PRK02888        282 EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-----PKNPHGVNTSPDGKYFIANGK--------------  340 (635)
T ss_pred             HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-----CCCccceEECCCCCEEEEeCC--------------
Confidence            0122324455552  35688888876     334333321     247899999999999999842              


Q ss_pred             ecCCCceEEEEeCCCCcE------------EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          176 SGDKTGRLMKYDPATKQV------------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~------------~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                         ....|-.+|.++.+.            ..-..-...|-..+|+.+|+ .|.+...+++|.+|+++.
T Consensus       341 ---lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        341 ---LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ---CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence               234566677654221            11112256788999999987 899999999999999864

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.23  E-value=1.4e-05  Score=71.82  Aligned_cols=142  Identities=18%  Similarity=0.272  Sum_probs=95.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc----ceEEEEecCCCe
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR----PLGLCFNKTNGD  109 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~gi~~~~~~g~  109 (359)
                      -+|-||+++..|.-+|++...-+++..++.++..+....                    ...+.    ..++.+++ +|.
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~--------------------~~~G~~~kf~N~ldI~~-~g~  173 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD--------------------EAEGKPFKFLNDLDIDP-EGV  173 (376)
T ss_pred             CCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc--------------------cccCeeeeecCceeEcC-CCe
Confidence            489999999988338887777889999999874333221                    11122    23566777 778


Q ss_pred             EEEEeC------------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccce
Q 018242          110 LYIADA------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHI  171 (359)
Q Consensus       110 l~v~~~------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~  171 (359)
                      +|.++.                  .+++++||+.++..+.+.+     ...++|+++.++|+.++.+++..         
T Consensus       174 vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~~Et~---------  239 (376)
T KOG1520|consen  174 VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLVAETT---------  239 (376)
T ss_pred             EEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEEEeec---------
Confidence            877753                  1247788887776655544     35689999999999988888543         


Q ss_pred             eeeeecCCCceEEEEeCCCCcE---EEEeCCCC-CCceEEEccCCCEEEEEe
Q 018242          172 SVILSGDKTGRLMKYDPATKQV---TVLLGNLS-FPNGVALSEDGNYILLAE  219 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~~~~~---~~~~~~~~-~p~gia~~~d~~~l~v~~  219 (359)
                              ...+.+|-.++.+.   +.+..+++ .|.-|..+++|+ .||+.
T Consensus       240 --------~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVal  282 (376)
T KOG1520|consen  240 --------TARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVAL  282 (376)
T ss_pred             --------cceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCC-EEEEE
Confidence                    23566655544333   55555443 588898888887 45554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.0045  Score=58.52  Aligned_cols=137  Identities=18%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             EEEEecCCCe-EEEEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          100 GLCFNKTNGD-LYIADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       100 gi~~~~~~g~-l~v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...++|++++ ++++...   ..|+++|..+++.+.+.. ..+    ......++|||+++.++...             
T Consensus       192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SPDG~~la~~~~~-------------  253 (419)
T PRK04043        192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSKDGSKLLLTMAP-------------  253 (419)
T ss_pred             eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECCCCCEEEEEEcc-------------
Confidence            4567885444 6655433   249999999998766543 111    11234689999877776322             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                        .....||.++.+++..+.+...........++|||+.++++....  ..|++++++++..   +.+... +. .+..+
T Consensus       254 --~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~rlt~~-g~-~~~~~  326 (419)
T PRK04043        254 --KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQVVFH-GK-NNSSV  326 (419)
T ss_pred             --CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---EeCccC-CC-cCceE
Confidence              123579999988877665532221123457999999877776443  3788888865432   111111 11 23578


Q ss_pred             CCCCCEEE
Q 018242          254 SPRGGFWV  261 (359)
Q Consensus       254 d~~G~lwv  261 (359)
                      +++|+..+
T Consensus       327 SPDG~~Ia  334 (419)
T PRK04043        327 STYKNYIV  334 (419)
T ss_pred             CCCCCEEE
Confidence            89997433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.19  E-value=0.0019  Score=60.26  Aligned_cols=247  Identities=16%  Similarity=0.131  Sum_probs=121.5

Q ss_pred             CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcce-EEEEecCCCeEEEEeCCCcEEEEe
Q 018242           45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL-GLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      +..+|++..++.++.+|..+++...-..                  .   ..... ...+.  ++.+++....+.|+.+|
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~------------------~---~~~~~~~p~v~--~~~v~v~~~~g~l~a~d  161 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAK------------------L---SSEVLSPPLVA--NGLVVVRTNDGRLTALD  161 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeec------------------c---CceeecCCEEE--CCEEEEECCCCeEEEEE
Confidence            3347788888899999987765433210                  0   01111 11122  67888876556699999


Q ss_pred             CCCCeEEEEeecCCC-ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC
Q 018242          124 PEGGLATAVATQSEG-IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF  202 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~-~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~  202 (359)
                      .++|+.......... .........++. ++. +|++.                  ..+.++.+|+.+|+...... ...
T Consensus       162 ~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~-v~~~~------------------~~g~v~ald~~tG~~~W~~~-~~~  220 (377)
T TIGR03300       162 AATGERLWTYSRVTPALTLRGSASPVIA-DGG-VLVGF------------------AGGKLVALDLQTGQPLWEQR-VAL  220 (377)
T ss_pred             cCCCceeeEEccCCCceeecCCCCCEEE-CCE-EEEEC------------------CCCEEEEEEccCCCEeeeec-ccc
Confidence            988875432211110 000000111222 345 77762                  24579999988887654211 000


Q ss_pred             C-------------ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCC
Q 018242          203 P-------------NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       203 p-------------~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      +             ....+  .++.+|+.. .++.++.++....+.    .+.. ... .....++ +|++|+++..+. 
T Consensus       221 ~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~----~W~~~~~~-~~~p~~~-~~~vyv~~~~G~-  290 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRV----LWKRDASS-YQGPAVD-DNRLYVTDADGV-  290 (377)
T ss_pred             CCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcE----EEeeccCC-ccCceEe-CCEEEEECCCCe-
Confidence            1             01112  234577765 457899999754421    1221 111 2233343 466777764332 


Q ss_pred             ccccccccCC-ccceeeecC-Ccccee------eeeecccccCcceEEEEECCC-CCEEEEEEccCCceeeceEEEEEeC
Q 018242          269 GISKLVLSFP-WIGNVLIKL-PIDIVK------IHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKD  339 (359)
Q Consensus       269 ~~~~~~~~~~-~~g~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~  339 (359)
                           +..++ .+|+.+.+. ......      .....+-.... +.+++++.+ |+++..+....+.   ........+
T Consensus       291 -----l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~-G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~  361 (377)
T TIGR03300       291 -----VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFE-GYLHWLSREDGSFVARLKTDGSG---IASPPVVVG  361 (377)
T ss_pred             -----EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEEcCCCc---cccCCEEEC
Confidence                 44444 366665443 111111      11111112233 456667653 6666555432211   111223347


Q ss_pred             CEEEEecCCCCeEEEE
Q 018242          340 GNLWIGSVNMPYAGLY  355 (359)
Q Consensus       340 g~l~ig~~~~~~l~~~  355 (359)
                      ++||+++. +..|..+
T Consensus       362 ~~l~v~~~-dG~l~~~  376 (377)
T TIGR03300       362 DGLLVQTR-DGDLYAF  376 (377)
T ss_pred             CEEEEEeC-CceEEEe
Confidence            79999997 5556554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PTZ00420 coronin; Provisional

Probab=98.16  E-value=0.0016  Score=63.38  Aligned_cols=195  Identities=12%  Similarity=0.040  Sum_probs=108.7

Q ss_pred             CCceEEEccC-CCeeEEecCCCEEEEEEcCCcce--EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRW--LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        35 ~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...+++++|+ +.+++++..++.|..||..++..  ..+.          .|    +..+.........++++|....++
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~----------~p----~~~L~gH~~~V~sVaf~P~g~~iL  141 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK----------DP----QCILKGHKKKISIIDWNPMNYYIM  141 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc----------cc----eEEeecCCCcEEEEEECCCCCeEE
Confidence            4458899986 77788889999999999865311  1000          00    001122234467889999444555


Q ss_pred             EE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ++ ...+.|..+|..+++...... .    ...+..+.++++|+ ++++.                 ...+.|..||+.+
T Consensus       142 aSgS~DgtIrIWDl~tg~~~~~i~-~----~~~V~SlswspdG~-lLat~-----------------s~D~~IrIwD~Rs  198 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKRAFQIN-M----PKKLSSLKWNIKGN-LLSGT-----------------CVGKHMHIIDPRK  198 (568)
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEe-c----CCcEEEEEECCCCC-EEEEE-----------------ecCCEEEEEECCC
Confidence            44 334458889998776432211 1    12467899999999 66652                 2245788999987


Q ss_pred             CcEEE-EeCCCCCCc--eE---EEccCCCEEEEEecCC---CEEEEEEcCCCCCcceeEeecCCCCCCce--EECC-CCC
Q 018242          191 KQVTV-LLGNLSFPN--GV---ALSEDGNYILLAETTS---CRILRYWLKTSKAGTIEIVAQLPGFPDNI--KRSP-RGG  258 (359)
Q Consensus       191 ~~~~~-~~~~~~~p~--gi---a~~~d~~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~p~~i--~~d~-~G~  258 (359)
                      ++... +..+.....  .+   .++++++.+..+....   ..|..||+..... ....+ .+...+..+  ..|+ +|.
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~-~ld~~~~~L~p~~D~~tg~  276 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTM-SIDNASAPLIPHYDESTGL  276 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEE-EecCCccceEEeeeCCCCC
Confidence            75543 221111111  11   2346777666655443   3799999864211 11111 121212222  3344 477


Q ss_pred             EEEEEecCCC
Q 018242          259 FWVGIHSRRK  268 (359)
Q Consensus       259 lwv~~~~~~~  268 (359)
                      ++++..+.+.
T Consensus       277 l~lsGkGD~t  286 (568)
T PTZ00420        277 IYLIGKGDGN  286 (568)
T ss_pred             EEEEEECCCe
Confidence            8876656554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=0.00029  Score=67.02  Aligned_cols=175  Identities=12%  Similarity=0.083  Sum_probs=107.2

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ++++++.+.+.+.-.+-+++|+|.++.+++ .+-+||+++++.. .+.....                ...........+
T Consensus       372 ~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~----------------~~~~~~~~a~~i  434 (691)
T KOG2048|consen  372 IHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVD----------------DVPLALLDASAI  434 (691)
T ss_pred             hhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcc-eeEEEec----------------cchhhhccceee
Confidence            446688887767777888899999665554 4468889888763 2221100                011111123456


Q ss_pred             EEecCCCeEEEEe-CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          102 CFNKTNGDLYIAD-AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       102 ~~~~~~g~l~v~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      .+.-+++.++++. ....+..++.++...+++....+...-..+..|+++++|+++-+.                  +..
T Consensus       435 ~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~------------------~t~  496 (691)
T KOG2048|consen  435 SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAI------------------STR  496 (691)
T ss_pred             EEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEE------------------ecc
Confidence            6666566666665 233577777776655554433222234567889999999944333                  235


Q ss_pred             ceEEEEeCCCCcEEEEeCCCC-CCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          181 GRLMKYDPATKQVTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      |.|+.|+.++++.+.+...+. .....++.|....-++..+.+++++.|++..
T Consensus       497 g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~  549 (691)
T KOG2048|consen  497 GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA  549 (691)
T ss_pred             ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence            689999999887776543332 3356667754443445556778999999853

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.16  E-value=0.00034  Score=60.71  Aligned_cols=178  Identities=13%  Similarity=0.195  Sum_probs=101.3

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEE--cCCcceEEEeecCCCCCCCCCCcccccccccccCCcce
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL   99 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (359)
                      ++.+.++++.++..||+|+...+|....++-.+..++.+.  +++. +..+... +.+.      +    .........-
T Consensus       117 GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~-~~~~~~~-~i~L------~----~~~k~N~GfE  184 (316)
T COG3204         117 GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT-VISAKVQ-KIPL------G----TTNKKNKGFE  184 (316)
T ss_pred             CceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc-EEeccce-EEec------c----ccCCCCcCce
Confidence            6667799999999999999999998555666667777554  4432 2222100 0000      0    0001111245


Q ss_pred             EEEEecCCCeEEEEeCCC--cEEEEeCCCCeEE-EEeecCC---CccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          100 GLCFNKTNGDLYIADAYF--GLLKVGPEGGLAT-AVATQSE---GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~--~i~~~~~~~~~~~-~~~~~~~---~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      |++++++++.+|++-..+  +|+.++....... +......   ..-...++++.+++..++++|-...           
T Consensus       185 GlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E-----------  253 (316)
T COG3204         185 GLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDE-----------  253 (316)
T ss_pred             eeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecC-----------
Confidence            899999999999996655  4666553221111 1111000   1112355677787654446665222           


Q ss_pred             eeecCCCceEEEEeCCCCcEEEE---------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          174 ILSGDKTGRLMKYDPATKQVTVL---------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~~~---------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                            ...|..+|.++.-...+         ....+.++||+++.+|. ||+... .+..++|..
T Consensus       254 ------Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSE-Pnlfy~F~~  311 (316)
T COG3204         254 ------SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSE-PNLFYRFTP  311 (316)
T ss_pred             ------CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEec-CCcceeccc
Confidence                  23466666654322221         12346789999998887 777754 456777754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.14  E-value=0.0012  Score=56.07  Aligned_cols=204  Identities=11%  Similarity=0.092  Sum_probs=121.5

Q ss_pred             CCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-+.+++++.. .++.++..+..|.+||...++-..                    ..... ++-.-+..+|+++.+.++
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~--------------------~i~~~-~eni~i~wsp~g~~~~~~  124 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA--------------------RIETK-GENINITWSPDGEYIAVG  124 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEE--------------------Eeecc-CcceEEEEcCCCCEEEEe
Confidence            44567788753 446677888899999987763221                    11111 223357788866777777


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-Cc
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQ  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~  192 (359)
                      +..+.|..+|..+.+...-..     -....+.+.+..+++ +|+.+.+                 .|+|-...-.. .-
T Consensus       125 ~kdD~it~id~r~~~~~~~~~-----~~~e~ne~~w~~~nd-~Fflt~G-----------------lG~v~ILsypsLkp  181 (313)
T KOG1407|consen  125 NKDDRITFIDARTYKIVNEEQ-----FKFEVNEISWNNSND-LFFLTNG-----------------LGCVEILSYPSLKP  181 (313)
T ss_pred             cCcccEEEEEecccceeehhc-----ccceeeeeeecCCCC-EEEEecC-----------------CceEEEEecccccc
Confidence            766778888877654322111     123567888887777 7777443                 34443332111 11


Q ss_pred             EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCcccc
Q 018242          193 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISK  272 (359)
Q Consensus       193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~  272 (359)
                      +..+..+...---|.|+|+|++ +.+++.+..+-.||++.  +-..+.+..+.-..+-+.++-+|++.........    
T Consensus       182 v~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~E--LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~----  254 (313)
T KOG1407|consen  182 VQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDE--LICERCISRLDWPVRTLSFSHDGRMLASASEDHF----  254 (313)
T ss_pred             ccccccCCcceEEEEECCCCce-EeeccccceeeccChhH--hhhheeeccccCceEEEEeccCcceeeccCccce----
Confidence            2222222233346889999985 55566677788888643  3334444443332466888889988886666543    


Q ss_pred             cccc-CCccceeeecCCcc
Q 018242          273 LVLS-FPWIGNVLIKLPID  290 (359)
Q Consensus       273 ~~~~-~~~~g~~~~~~~~~  290 (359)
                       +.+ +.++|..+..++..
T Consensus       255 -IDIA~vetGd~~~eI~~~  272 (313)
T KOG1407|consen  255 -IDIAEVETGDRVWEIPCE  272 (313)
T ss_pred             -EEeEecccCCeEEEeecc
Confidence             222 45788888777664

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=98.14  E-value=0.00023  Score=64.07  Aligned_cols=181  Identities=17%  Similarity=0.167  Sum_probs=114.0

Q ss_pred             CCceEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .--++.|.|.  +.-+.++..+|.+..|+.++..                    ++..++....+...++|.| +|+...
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--------------------~l~~l~gH~~RVs~VafHP-sG~~L~  277 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--------------------PLQDLEGHLARVSRVAFHP-SGKFLG  277 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCCCc--------------------chhhhhcchhhheeeeecC-CCceee
Confidence            4456777775  4447888888999999887641                    1113444445667889999 777666


Q ss_pred             EeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +...+. =..+|..++..- +....   ....+.++++.+||. |..+-                 +.+.--..||..++
T Consensus       278 TasfD~tWRlWD~~tk~El-L~QEG---Hs~~v~~iaf~~DGS-L~~tG-----------------GlD~~~RvWDlRtg  335 (459)
T KOG0272|consen  278 TASFDSTWRLWDLETKSEL-LLQEG---HSKGVFSIAFQPDGS-LAATG-----------------GLDSLGRVWDLRTG  335 (459)
T ss_pred             ecccccchhhcccccchhh-Hhhcc---cccccceeEecCCCc-eeecc-----------------CccchhheeecccC
Confidence            544443 334577765422 11111   123678899999999 76651                 11211223677777


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC---CCCCceEECC-CCCEEEEEe
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSP-RGGFWVGIH  264 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~-~G~lwv~~~  264 (359)
                      ....+. .+.....+++|+|.|. .+.+.+.+++..+||+.....     +...|   .....+.+++ .|+..++..
T Consensus       336 r~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~-----ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  336 RCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE-----LYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             cEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc-----ceecccccchhhheEecccCCeEEEEcc
Confidence            776654 4566678999999985 788888899999999854311     22222   3456688887 566555443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.13  E-value=0.00041  Score=65.31  Aligned_cols=164  Identities=17%  Similarity=0.244  Sum_probs=93.6

Q ss_pred             ccCCcceEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEEeec---CCCccccccceEEEeCCC------CEEEEEeCC
Q 018242           93 HICGRPLGLCFNKTNGDLYIADA-YFGLLKVGPEGGLATAVATQ---SEGIPFRFCNSLDIDQST------GIIYFTDSS  162 (359)
Q Consensus        93 ~~~~~p~gi~~~~~~g~l~v~~~-~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~d~~g------~~l~v~d~~  162 (359)
                      .....|.+|++.+ ++++||+.. .+.|.+++..++..+.+...   ........+.+|+++|+=      ++||++-+.
T Consensus        27 ~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~  105 (454)
T TIGR03606        27 SGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY  105 (454)
T ss_pred             CCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence            3456799999999 899999987 36788998776554333221   111124567889998662      458998322


Q ss_pred             CccccccceeeeeecCCCceEEEEeCC--CCc---EEEEeCCC-----CCCceEEEccCCCEEEEEecCC----------
Q 018242          163 SQFQRRNHISVILSGDKTGRLMKYDPA--TKQ---VTVLLGNL-----SFPNGVALSEDGNYILLAETTS----------  222 (359)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~---~~~~~~~~-----~~p~gia~~~d~~~l~v~~~~~----------  222 (359)
                      ..-..        .......|.++..+  +..   .+.+....     ..-..|+|+|||+ ||++--+.          
T Consensus       106 ~~~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~  176 (454)
T TIGR03606       106 KNGDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFL  176 (454)
T ss_pred             cCCCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccC
Confidence            10000        00012356665432  111   12222221     2235789999997 88854332          


Q ss_pred             ----------------------CEEEEEEcCCCCC--------cceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242          223 ----------------------CRILRYWLKTSKA--------GTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       223 ----------------------~~i~~~~~~~~~~--------~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                                            +.|.|++.++.-.        ...+++.- +.. |.++++|++|.||++.++..
T Consensus       177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RN-p~Gla~dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRN-PQGLAFTPDGTLYASEQGPN  251 (454)
T ss_pred             cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccc-cceeEECCCCCEEEEecCCC
Confidence                                  2577777653200        01233332 222 77899999999999988743

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=98.12  E-value=0.00019  Score=60.50  Aligned_cols=185  Identities=10%  Similarity=0.063  Sum_probs=109.0

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      .++|+.|-+.|.++....-+..+|.+.-+               .|+.    ++....+....+.+...+..+.-+...+
T Consensus       105 ~~af~~ds~~lltgg~ekllrvfdln~p~---------------App~----E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen  105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPK---------------APPK----EISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             eEEecccchhhhccchHHHhhhhhccCCC---------------CCch----hhcCCCCcceeEEEeccCceEEeeccCC
Confidence            56777776656676666666666665431               0111    2222223333444555466666554445


Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      .|..+|..+++.......     ...+..+-++++|++|-+++                   .+.|..+|+++-.+..-.
T Consensus       166 tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~ilTia~-------------------gssV~Fwdaksf~~lKs~  221 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRILTIAY-------------------GSSVKFWDAKSFGLLKSY  221 (334)
T ss_pred             ceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEEEEec-------------------CceeEEeccccccceeec
Confidence            688889888764432221     13567889999999444442                   346888988753221111


Q ss_pred             CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCC
Q 018242          198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .-....+...+.|+.+ .||+.-.+..+++||...+.  ....+.. -.+-...+.+.|+|.+|......+.
T Consensus       222 k~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT  290 (334)
T KOG0278|consen  222 KMPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT  290 (334)
T ss_pred             cCccccccccccCCCc-eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence            1112235566788774 89999999999999986542  1223322 3343467889999999986665553

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.12  E-value=0.00015  Score=60.73  Aligned_cols=146  Identities=14%  Similarity=0.205  Sum_probs=88.0

Q ss_pred             CCCceEEEccCCCeeEEecCC----------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSD----------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      ++-.+--.||+|+ +|.+++.          +.++.|-+... ..                     .......-+.|+++
T Consensus       109 nR~NDgkvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h~-v~---------------------~i~~~v~IsNgl~W  165 (310)
T KOG4499|consen  109 NRLNDGKVDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGHQ-VE---------------------LIWNCVGISNGLAW  165 (310)
T ss_pred             cccccCccCCCCc-eeeeeeccccccccccccEEEEeccCCC-ce---------------------eeehhccCCccccc
Confidence            4555667889999 7888764          34444443321 11                     11222244789999


Q ss_pred             ecCCCeEEEEeCCC-cE--EEEeCCCCeEE---EEee--cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          104 NKTNGDLYIADAYF-GL--LKVGPEGGLAT---AVAT--QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       104 ~~~~g~l~v~~~~~-~i--~~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      |.+...+|+.+..+ .|  +.||..+|.+.   .+.+  .........|.++++|.+|+ |||+...             
T Consensus       166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~n-------------  231 (310)
T KOG4499|consen  166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFN-------------  231 (310)
T ss_pred             cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEec-------------
Confidence            98667788877654 46  55557776542   1211  11222345789999999999 9999543             


Q ss_pred             ecCCCceEEEEeCCCCcEEE-EeCCCCCCceEEEc-cCCCEEEEEec
Q 018242          176 SGDKTGRLMKYDPATKQVTV-LLGNLSFPNGVALS-EDGNYILLAET  220 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~-~d~~~l~v~~~  220 (359)
                          .++|+++||.+|+... +.-........||. +.-..+|++..
T Consensus       232 ----g~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  232 ----GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ----CcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence                4689999999987543 22222334556664 22234666643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.11  E-value=0.0003  Score=64.45  Aligned_cols=136  Identities=15%  Similarity=0.261  Sum_probs=92.1

Q ss_pred             eeEEecCCC-EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCC
Q 018242           47 GPYTGVSDG-RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPE  125 (359)
Q Consensus        47 ~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~  125 (359)
                      -..+++.+| .+..+|.++++.+.+                     ....+....+.+++++..+.+++....|..+|.+
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~---------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRI---------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEe---------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            367777776 889999998866544                     2334555678888833447777766679999999


Q ss_pred             CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCce
Q 018242          126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG  205 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~g  205 (359)
                      ++.++.+...    ....+.+++++|+++  |++     |...       ++-.+..|-.+|..+++.-.+.+....-..
T Consensus       432 ngnv~~idkS----~~~lItdf~~~~nsr--~iA-----YafP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~Dfs  493 (668)
T COG4946         432 NGNVRLIDKS----EYGLITDFDWHPNSR--WIA-----YAFP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFS  493 (668)
T ss_pred             CCCeeEeccc----ccceeEEEEEcCCce--eEE-----EecC-------cceeeeeEEEEecCCCeEEEecCCcccccC
Confidence            9998755321    234677899999998  666     2111       112234577788887766555444445567


Q ss_pred             EEEccCCCEEEEEecC
Q 018242          206 VALSEDGNYILLAETT  221 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~  221 (359)
                      -||+||+++||.....
T Consensus       494 PaFD~d~ryLYfLs~R  509 (668)
T COG4946         494 PAFDPDGRYLYFLSAR  509 (668)
T ss_pred             cccCCCCcEEEEEecc
Confidence            7899999999987643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.08  E-value=0.0064  Score=62.63  Aligned_cols=186  Identities=9%  Similarity=0.107  Sum_probs=107.9

Q ss_pred             ceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .++++.+ ++.++.++..++.|..||..+++...                    .+.........+++++.++.++++..
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~--------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT--------------------EMKEHEKRVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE--------------------EecCCCCCEEEEEEcCCCCCEEEEEc
Confidence            4667766 36667788889999999988753221                    12223344678899865666665544


Q ss_pred             C-CcEEEEeCCCCeEEEEeecCCCccccccceEEEe-CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242          116 Y-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-  192 (359)
Q Consensus       116 ~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  192 (359)
                      . +.|..+|..++........     ...+..+.+. ++|+ .+++-                 ...+.|..||..+.. 
T Consensus       596 ~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~-~latg-----------------s~dg~I~iwD~~~~~~  652 (793)
T PLN00181        596 DDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGR-SLAFG-----------------SADHKVYYYDLRNPKL  652 (793)
T ss_pred             CCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCC-EEEEE-----------------eCCCeEEEEECCCCCc
Confidence            4 4588889877653221111     1234456664 5677 44441                 335689999986543 


Q ss_pred             -EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC----cceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          193 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA----GTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       193 -~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                       ...+..+......+.+. +++ .+++.+.++.|..||+.....    .....+.........+.++++|.+.++....+
T Consensus       653 ~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~  730 (793)
T PLN00181        653 PLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN  730 (793)
T ss_pred             cceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence             22222333345677775 565 456667788999999853211    11122222223345578888887666554444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.07  E-value=0.0064  Score=53.34  Aligned_cols=233  Identities=15%  Similarity=0.112  Sum_probs=125.3

Q ss_pred             ccccCCcceEEEEecCCCeEEEEeCCCc-EEEEeCC--C--CeEEEEeecCC----CccccccceEEEeCCCCEEEEEeC
Q 018242           91 KEHICGRPLGLCFNKTNGDLYIADAYFG-LLKVGPE--G--GLATAVATQSE----GIPFRFCNSLDIDQSTGIIYFTDS  161 (359)
Q Consensus        91 ~~~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~--~--~~~~~~~~~~~----~~~~~~~~~l~~d~~g~~l~v~d~  161 (359)
                      .+....+++||++.| .+.+||++...+ ...||..  +  +..+.+.-.++    ......|.++++..-.. +-|+..
T Consensus        18 tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~-F~vt~~   95 (336)
T TIGR03118        18 VDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT-FVVSGE   95 (336)
T ss_pred             cCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc-eEEcCC
Confidence            344556799999999 899999987655 3455544  1  11111111111    11224577777765444 333321


Q ss_pred             CCccccccceeeeeecCCCceEEEEeCCCCcE------EEEeCC--CCCCceEEEcc--CCCEEEEEecCCCEEEEEEcC
Q 018242          162 SSQFQRRNHISVILSGDKTGRLMKYDPATKQV------TVLLGN--LSFPNGVALSE--DGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~------~~~~~~--~~~p~gia~~~--d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      +..-     ....+-.+..|.|--|.+.-+..      ..+...  ...=.|+|+..  .+..||.++..+++|-+||-.
T Consensus        96 g~~~-----~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~  170 (336)
T TIGR03118        96 GITG-----PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS  170 (336)
T ss_pred             Cccc-----ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence            1000     00000112234555555432211      112111  11124777763  356899999999999999843


Q ss_pred             CCCCcceeEeec--CCC--CCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceE
Q 018242          232 TSKAGTIEIVAQ--LPG--FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGM  307 (359)
Q Consensus       232 ~~~~~~~~~~~~--~~~--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      =.+......|.+  +|.  -|-||.-- .|+|||+--....           .+  ...++            +... +.
T Consensus       171 f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~-----------~~--~d~v~------------G~G~-G~  223 (336)
T TIGR03118       171 FRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDA-----------DR--NDEVA------------GAGL-GY  223 (336)
T ss_pred             cccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCC-----------cc--ccccc------------CCCc-ce
Confidence            211111122333  221  25566442 4789986543211           00  01111            1122 67


Q ss_pred             EEEECCCCCEEEEEEccCCceeeceEEEEE-------eCCEEEEecCCCCeEEEEcCCC
Q 018242          308 AMRISEQGNVLEILEEIGRKMWRSISEVEE-------KDGNLWIGSVNMPYAGLYNYSS  359 (359)
Q Consensus       308 ~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~g~l~ig~~~~~~l~~~~~~~  359 (359)
                      +-.||.+|+.++.+..  +..++.+.++..       -.|.|+||++.+.+|-.++..|
T Consensus       224 VdvFd~~G~l~~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       224 VNVFTLNGQLLRRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             EEEEcCCCcEEEEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence            8899999999999864  444666655542       2689999999999999998753

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.03  E-value=0.013  Score=55.57  Aligned_cols=142  Identities=12%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             EEEecCCCe---EEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          101 LCFNKTNGD---LYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       101 i~~~~~~g~---l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      -+++|++..   +|++...  ..|+.++.++++.+.+.. ..+    ......++|||++|.++....            
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g----~~~~p~wSPDG~~Laf~s~~~------------  252 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQG----NQLMPTFSPRKKLLAFISDRY------------  252 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCC----CccceEECCCCCEEEEEECCC------------
Confidence            357884333   2344322  259999999887665533 221    122468999998676663210            


Q ss_pred             ecCCCceEEE--EeCCC---CcEEEEeCC-CCCCceEEEccCCCEEEEEecCC--CEEEEEEcCCCCCcceeEeecCCCC
Q 018242          176 SGDKTGRLMK--YDPAT---KQVTVLLGN-LSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGF  247 (359)
Q Consensus       176 ~~~~~g~v~~--~d~~~---~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~  247 (359)
                         ....++.  ++..+   +..+.+... .......+++|||+.++++...+  ..|++++++... +..+.+......
T Consensus       253 ---g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~  328 (428)
T PRK01029        253 ---GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRN  328 (428)
T ss_pred             ---CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCC
Confidence               0112333  44432   233333322 22234678999999766655333  368887764321 112222222222


Q ss_pred             CCceEECCCCC-EEEEE
Q 018242          248 PDNIKRSPRGG-FWVGI  263 (359)
Q Consensus       248 p~~i~~d~~G~-lwv~~  263 (359)
                      .....+++||+ |.++.
T Consensus       329 ~~~p~wSPDG~~Laf~~  345 (428)
T PRK01029        329 SSCPAWSPDGKKIAFCS  345 (428)
T ss_pred             ccceeECCCCCEEEEEE
Confidence            34578899997 44443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.0001  Score=64.22  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=35.4

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceE
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL   68 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~   68 (359)
                      .|.-++-..||+..|+|||..+..+.-+|.|-.||-.+++.+
T Consensus       207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr  248 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR  248 (508)
T ss_pred             heecccccchhheeeCCCCceEeeccccceeeeehhccchhh
Confidence            455566789999999999998888999999999998887543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.02  E-value=0.0034  Score=54.27  Aligned_cols=192  Identities=17%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             CCEEEEeeCC-CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           23 QGVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        23 ~~~~~~~~~~-~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      +.+-+...++ ..++.......+|+ +|+...++.|+.+|+.+++...-..                  .......+  .
T Consensus        14 ~~~W~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~------------------~~~~~~~~--~   72 (238)
T PF13360_consen   14 KELWSYDLGPGIGGPVATAVPDGGR-VYVASGDGNLYALDAKTGKVLWRFD------------------LPGPISGA--P   72 (238)
T ss_dssp             EEEEEEECSSSCSSEEETEEEETTE-EEEEETTSEEEEEETTTSEEEEEEE------------------CSSCGGSG--E
T ss_pred             CEEEEEECCCCCCCccceEEEeCCE-EEEEcCCCEEEEEECCCCCEEEEee------------------ccccccce--e
Confidence            3344555532 23333224445555 8888888999999998875433211                  10110111  1


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCeEEEE-eecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAV-ATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                       ... ++.+|++...+.|+.+|.++|+.... .... +...........++  ++.+|++..                  
T Consensus        73 -~~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------------  130 (238)
T PF13360_consen   73 -VVD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS------------------  130 (238)
T ss_dssp             -EEE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET------------------
T ss_pred             -eec-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEec------------------
Confidence             222 78899887656799999888886543 1211 11112222334444  444888732                  


Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCC-----------ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCC
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFP-----------NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP  248 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p-----------~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  248 (359)
                      .+.|+.+|+++|+..........+           .+-.+..++ .+|++.... .+..+|+..++    ..+......+
T Consensus       131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g-~~~~~d~~tg~----~~w~~~~~~~  204 (238)
T PF13360_consen  131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDG-RVVAVDLATGE----KLWSKPISGI  204 (238)
T ss_dssp             CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTS-SEEEEETTTTE----EEEEECSS-E
T ss_pred             cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCC-eEEEEECCCCC----EEEEecCCCc
Confidence            467999999988875433221111           122222244 678876554 36666765442    2232222212


Q ss_pred             CceEECCCCCEEEEE
Q 018242          249 DNIKRSPRGGFWVGI  263 (359)
Q Consensus       249 ~~i~~d~~G~lwv~~  263 (359)
                      .....-.++.+|+++
T Consensus       205 ~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  205 YSLPSVDGGTLYVTS  219 (238)
T ss_dssp             CECEECCCTEEEEEE
T ss_pred             cCCceeeCCEEEEEe
Confidence            332334456788877

...

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.01  E-value=0.0076  Score=52.06  Aligned_cols=102  Identities=19%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++.+|+++..+.|+.+|.++|+....... +. +...+   ....+++ +|+...                  .+.++.+
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~---~~~~~~~-v~v~~~------------------~~~l~~~   91 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA---PVVDGGR-VYVGTS------------------DGSLYAL   91 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG---EEEETTE-EEEEET------------------TSEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce---eeecccc-cccccc------------------eeeeEec
Confidence            89999998777899999998886433222 11 11122   2333555 888842                  3479999


Q ss_pred             eCCCCcEEEEe-CCC----CCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          187 DPATKQVTVLL-GNL----SFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       187 d~~~~~~~~~~-~~~----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      |..+|+..... ...    ..........+++.+|+... ++.|+.+|++.+
T Consensus        92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG  142 (238)
T PF13360_consen   92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTG  142 (238)
T ss_dssp             ETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTT
T ss_pred             ccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCC
Confidence            98888877642 211    11112222223565676654 678999997654

...

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.00  E-value=0.015  Score=56.37  Aligned_cols=169  Identities=16%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC---------
Q 018242           45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA---------  115 (359)
Q Consensus        45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~---------  115 (359)
                      ++ +|+++.++.|+.+|.++++...-........     .     . ......|   .+.  ++.+|++..         
T Consensus       111 ~~-V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-----~-----~-~~i~ssP---~v~--~~~v~vg~~~~~~~~~~~  173 (488)
T cd00216         111 RK-VFFGTFDGRLVALDAETGKQVWKFGNNDQVP-----P-----G-YTMTGAP---TIV--KKLVIIGSSGAEFFACGV  173 (488)
T ss_pred             Ce-EEEecCCCeEEEEECCCCCEeeeecCCCCcC-----c-----c-eEecCCC---EEE--CCEEEEeccccccccCCC
Confidence            55 8888889999999999876443321110000     0     0 0011112   233  466777642         


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCc----cc------------c-ccceEEEeCCCCEEEEEeCCCc---cccccceeeee
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGI----PF------------R-FCNSLDIDQSTGIIYFTDSSSQ---FQRRNHISVIL  175 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~----~~------------~-~~~~l~~d~~g~~l~v~d~~~~---~~~~~~~~~~~  175 (359)
                      .+.++.+|.++|+..-........    +.            . .-...++|+.+.++|+......   +..+.   -..
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~---~~~  250 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRR---TPG  250 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCcc---CCC
Confidence            234888999988764332211110    00            0 0023567765544898843210   00000   000


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCC-------CCCceEEEc----cCCC--EEEEEecCCCEEEEEEcCCC
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNL-------SFPNGVALS----EDGN--YILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~-------~~p~gia~~----~d~~--~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .....+.|+.+|.++|+........       ..+....+.    -+++  .+.+..+.++.++.+|....
T Consensus       251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG  321 (488)
T cd00216         251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG  321 (488)
T ss_pred             CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC
Confidence            0122357999999999888653211       111111111    2332  13333456678999987654

The alignment model contains an 8-bladed beta-propeller.

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.99  E-value=0.0017  Score=58.63  Aligned_cols=214  Identities=15%  Similarity=0.061  Sum_probs=120.3

Q ss_pred             CCCc-eEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-C-e
Q 018242           34 IGPE-SLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-G-D  109 (359)
Q Consensus        34 ~~p~-~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g-~  109 (359)
                      .+|- ...++.++..+.++...|.+-.|+-.+.. ..+                     +.....+..++.|.|.+ + +
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~---------------------l~gH~~~v~~~~fhP~~~~~~  233 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT---------------------LRGHTSRVGAAVFHPVDSDLN  233 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEE---------------------EeccccceeeEEEccCCCccc
Confidence            3555 45577889988889998888888865532 222                     23333456678888852 3 4


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      +..+...+.+..++.++..  .+.. ..+ ....+..++++|+|+ +..+. .  |              +..=..||..
T Consensus       234 lat~s~Dgtvklw~~~~e~--~l~~-l~g-H~~RVs~VafHPsG~-~L~Ta-s--f--------------D~tWRlWD~~  291 (459)
T KOG0272|consen  234 LATASADGTVKLWKLSQET--PLQD-LEG-HLARVSRVAFHPSGK-FLGTA-S--F--------------DSTWRLWDLE  291 (459)
T ss_pred             eeeeccCCceeeeccCCCc--chhh-hhc-chhhheeeeecCCCc-eeeec-c--c--------------ccchhhcccc
Confidence            4444433335555555421  2211 111 123567899999999 44442 1  1              1122235665


Q ss_pred             CCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242          190 TKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       190 ~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ++.... ..++-.....++|.+||. |..++..+..=.+||+...   ....+.. ...-.-++.++|+|...++....+
T Consensus       292 tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn  367 (459)
T KOG0272|consen  292 TKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG---RCIMFLAGHIKEILSVAFSPNGYHLATGSSDN  367 (459)
T ss_pred             cchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccC---cEEEEecccccceeeEeECCCceEEeecCCCC
Confidence            543322 234456678999999997 6777666655566786543   2233333 223356799999997665544433


Q ss_pred             CccccccccCC-ccceeeecCCccceeeeeecc
Q 018242          268 KGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       268 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~  299 (359)
                      .     ..+++ +..+.+..+|-...-++.+.+
T Consensus       368 t-----~kVWDLR~r~~ly~ipAH~nlVS~Vk~  395 (459)
T KOG0272|consen  368 T-----CKVWDLRMRSELYTIPAHSNLVSQVKY  395 (459)
T ss_pred             c-----EEEeeecccccceecccccchhhheEe
Confidence            2     44444 244445556655444443333

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=0.0031  Score=55.13  Aligned_cols=187  Identities=14%  Similarity=0.143  Sum_probs=109.2

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .++++++||+.|.+++.+..|-.||...+. .+.+.                   +   .....+..+.|.+.+..++.-
T Consensus        69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-------------------f---~spv~~~q~hp~k~n~~va~~  126 (405)
T KOG1273|consen   69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-------------------F---DSPVWGAQWHPRKRNKCVATI  126 (405)
T ss_pred             eEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-------------------c---cCccceeeeccccCCeEEEEE
Confidence            389999999999999999999999987653 22221                   1   112356667776777777643


Q ss_pred             -CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          116 -YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       116 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                       ...-+.++....+.+.+....++.....+....+|+.|+++|.++                  ..|.+..++.++.++.
T Consensus       127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt------------------sKGkllv~~a~t~e~v  188 (405)
T KOG1273|consen  127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT------------------SKGKLLVYDAETLECV  188 (405)
T ss_pred             ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec------------------CcceEEEEecchheee
Confidence             222333444334444443322333334555568999999777773                  3468888998875443


Q ss_pred             EE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC----CCcceeE---eec-CCCCC-CceEECCCCCEEEEE
Q 018242          195 VL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS----KAGTIEI---VAQ-LPGFP-DNIKRSPRGGFWVGI  263 (359)
Q Consensus       195 ~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~----~~~~~~~---~~~-~~~~p-~~i~~d~~G~lwv~~  263 (359)
                      .-  .........|.++..|+ .++.++.+.-|..|++..-    +.+..+.   +.+ ....+ ...+++.+|.+.+|.
T Consensus       189 as~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~  267 (405)
T KOG1273|consen  189 ASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG  267 (405)
T ss_pred             eeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence            21  11123345677777776 4666677777888886421    1111111   111 11223 347889999655555


Q ss_pred             e
Q 018242          264 H  264 (359)
Q Consensus       264 ~  264 (359)
                      .
T Consensus       268 s  268 (405)
T KOG1273|consen  268 S  268 (405)
T ss_pred             c
Confidence            4

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.98  E-value=0.00035  Score=67.45  Aligned_cols=186  Identities=14%  Similarity=0.131  Sum_probs=115.7

Q ss_pred             CCc-eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCeEEE
Q 018242           35 GPE-SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~-~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~l~v  112 (359)
                      +|. +..|.|+.++|..+.++..+..|..++..-..                     .......| ..+.|.| .|..|+
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---------------------~y~GH~~PVwdV~F~P-~GyYFa  509 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---------------------IYKGHLAPVWDVQFAP-RGYYFA  509 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEE---------------------EecCCCcceeeEEecC-CceEEE
Confidence            554 88899999988888999999999988752111                     11122234 4566887 777777


Q ss_pred             EeCCCcEEE-EeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADAYFGLLK-VGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~~~~i~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +...++..+ +..+..+. +.++.     ....+.-+.++|+.+  |+++-+                ..-.|-.||..+
T Consensus       510 tas~D~tArLWs~d~~~PlRifag-----hlsDV~cv~FHPNs~--Y~aTGS----------------sD~tVRlWDv~~  566 (707)
T KOG0263|consen  510 TASHDQTARLWSTDHNKPLRIFAG-----HLSDVDCVSFHPNSN--YVATGS----------------SDRTVRLWDVST  566 (707)
T ss_pred             ecCCCceeeeeecccCCchhhhcc-----cccccceEEECCccc--ccccCC----------------CCceEEEEEcCC
Confidence            655444332 22222221 11221     223455588999998  555322                234677788777


Q ss_pred             CcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          191 KQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       191 ~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      |....+ .++......++++|+|++ +++...++.|..||+.....  ...+....+....+.++.+|++.+...++..
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns  642 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNS  642 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence            655544 444555689999999985 55666778999999865422  1112222344567899999998887766543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.96  E-value=0.0091  Score=59.16  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=94.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      +=..|+++++|..++++..++-|.+|+....+                 .+|+  .+...+....+++..  .+.+.++.
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-----------------e~P~--ti~~~g~~v~~ia~~--s~~f~~~s   73 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-----------------EEPE--TIDISGELVSSIACY--SNHFLTGS   73 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcc-----------------cCCc--hhhccCceeEEEeec--ccceEEee
Confidence            56789999999988999999999999865431                 0011  111111223444443  45666667


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      .++.|.+|....++...+..++.    ..++.++++.+|+ ..++ .+                -.-.|-+++..+...+
T Consensus        74 ~~~tv~~y~fps~~~~~iL~Rft----lp~r~~~v~g~g~-~iaa-gs----------------dD~~vK~~~~~D~s~~  131 (933)
T KOG1274|consen   74 EQNTVLRYKFPSGEEDTILARFT----LPIRDLAVSGSGK-MIAA-GS----------------DDTAVKLLNLDDSSQE  131 (933)
T ss_pred             ccceEEEeeCCCCCccceeeeee----ccceEEEEecCCc-EEEe-ec----------------CceeEEEEeccccchh
Confidence            77789999887776543433222    1356789999998 3333 11                1113555554433333


Q ss_pred             EE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          195 VL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       195 ~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .. ...-...-++.++|.++.|-+ .+.++.|+.|+++..
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAv-ss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAV-SSCDGKVQIWDLQDG  170 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEE-EecCceEEEEEcccc
Confidence            32 233334468999999985544 457789999998754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.95  E-value=0.012  Score=52.40  Aligned_cols=152  Identities=16%  Similarity=0.111  Sum_probs=95.3

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-eCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DAY  116 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~~  116 (359)
                      +++.+|+.++..++..+..-+.|+..++++--                    .+.........+.|+. +|.+.++ +..
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~--------------------eltgHKDSVt~~~Fsh-dgtlLATGdms  127 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAG--------------------ELTGHKDSVTCCSFSH-DGTLLATGDMS  127 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCccee--------------------EecCCCCceEEEEEcc-CceEEEecCCC
Confidence            67778877755566677788999988874211                    2223333456788888 6666554 555


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQVTV  195 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~  195 (359)
                      +.|..+...++..+....    .+...+.=+.++|.+. ++++                 +...|.||.|.... +..+.
T Consensus       128 G~v~v~~~stg~~~~~~~----~e~~dieWl~WHp~a~-illA-----------------G~~DGsvWmw~ip~~~~~kv  185 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLD----QEVEDIEWLKWHPRAH-ILLA-----------------GSTDGSVWMWQIPSQALCKV  185 (399)
T ss_pred             ccEEEEEcccCceEEEee----cccCceEEEEeccccc-EEEe-----------------ecCCCcEEEEECCCcceeeE
Confidence            557777777766543222    1122333467889888 6655                 34578899998776 34444


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +.+.....+-=.|.|||+++.. ...++.|.+|+++..
T Consensus       186 ~~Gh~~~ct~G~f~pdGKr~~t-gy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  186 MSGHNSPCTCGEFIPDGKRILT-GYDDGTIIVWNPKTG  222 (399)
T ss_pred             ecCCCCCcccccccCCCceEEE-EecCceEEEEecCCC
Confidence            4443333333357799996554 456889999997654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.95  E-value=0.0029  Score=53.17  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             ceEEEEecCCCeEEEEe--CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           98 PLGLCFNKTNGDLYIAD--AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...++++|++.++.+..  ....+..+|.++..+..+.       ....+.+.++|+|+++.++..+             
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~-------------  121 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDGRFLVLAGFG-------------  121 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCCCEEEEEEcc-------------
Confidence            67899999555555553  2235888888744433221       1345789999999955555322             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC-----CCEEEEEEcCC
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-----SCRILRYWLKT  232 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~-----~~~i~~~~~~~  232 (359)
                        ...|.|..+|.++.+.... ..-.....++++|||+++..+.+.     ++++..|+..+
T Consensus       122 --n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  122 --NLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             --CCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence              2346788899874433221 122335789999999987766553     45566666544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=0.0092  Score=52.32  Aligned_cols=159  Identities=15%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-  115 (359)
                      .+++|++||+.+.+...++.|..|+.+.-+-      .+++.          +...-....|.-++|.|+-..+.++-. 
T Consensus        90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~------~eHr~----------~R~nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   90 TDVAFSSDGKKLATISGDRSIRLWDVRDFEN------KEHRC----------IRQNVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             eeeEEcCCCceeEEEeCCceEEEEecchhhh------hhhhH----------hhccccCCCceEEEECCCcceEEEEEcc
Confidence            4899999999777888889999998765100      00100          011111235778888885455555433 


Q ss_pred             CCcEEEEeCC---CCeEEEEeecCCCcccc-----ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          116 YFGLLKVGPE---GGLATAVATQSEGIPFR-----FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       116 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      ++.|+.|...   .|....-........+.     .+-++-+. ++. .|+...+                ..-.|..|+
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~-k~imsas----------------~dt~i~lw~  215 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNA-KYIMSAS----------------LDTKICLWD  215 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCc-eEEEEec----------------CCCcEEEEe
Confidence            3446665432   12211100111111111     11122222 333 4555322                233688889


Q ss_pred             CCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          188 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       188 ~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ..+..+..+......-...+++|+|+.+.++.. +--+.+|.+
T Consensus       216 lkGq~L~~idtnq~~n~~aavSP~GRFia~~gF-TpDVkVwE~  257 (420)
T KOG2096|consen  216 LKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF-TPDVKVWEP  257 (420)
T ss_pred             cCCceeeeeccccccccceeeCCCCcEEEEecC-CCCceEEEE
Confidence            886555555555555567789999997766654 445777765

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.017  Score=53.33  Aligned_cols=185  Identities=14%  Similarity=0.026  Sum_probs=93.9

Q ss_pred             CCCCCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCC-CCCCCccccc----ccccccCCcceEEEEec
Q 018242           32 GAIGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRD-GCEGAYEYDH----AAKEHICGRPLGLCFNK  105 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~p~gi~~~~  105 (359)
                      ++..|+++...|+|+ +.+.... +.+..+..... ...-  ....+. ...+..+-..    ..+......+.++++. 
T Consensus        65 gLe~p~~~~~lP~G~-~~v~er~~G~l~~i~~g~~-~~~~--~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~-  139 (399)
T COG2133          65 GLEHPWGLARLPDGV-LLVTERPTGRLRLISDGGS-ASPP--VSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP-  139 (399)
T ss_pred             cccCchhheecCCce-EEEEccCCccEEEecCCCc-cccc--ccccceEEeccCCCccceEecccccccceeeeEEEee-
Confidence            477999999999995 5555554 66655432211 0000  000000 0000000000    0111222335566555 


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeE---EEEeecCCCccccccceEEEeCCCCEEEEEeCCCcc-----ccccceeeeeec
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQF-----QRRNHISVILSG  177 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~-----~~~~~~~~~~~~  177 (359)
                       ++.+|+++. ..+.+++....++   +.+....++...++-..|+++|||+ |||+.-+..-     ........+.+.
T Consensus       140 -~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~-Lyvs~G~~~~~~~aq~~~~~~Gk~~r~  216 (399)
T COG2133         140 -GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGK-LYVTTGSNGDPALAQDNVSLAGKVLRI  216 (399)
T ss_pred             -cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCc-EEEEeCCCCCcccccCccccccceeee
Confidence             566677653 3566776221222   2222333333355667899999997 9999644310     000011101111


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI  225 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i  225 (359)
                      . ...+...|+.+...+.+..+...|.|++++|..+.||.++.....+
T Consensus       217 ~-~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         217 D-RAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             c-cCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence            1 1234455555445555566778899999999855699998877555

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.92  E-value=0.0015  Score=55.30  Aligned_cols=139  Identities=11%  Similarity=0.083  Sum_probs=93.0

Q ss_pred             eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCCC
Q 018242           48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGG  127 (359)
Q Consensus        48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~  127 (359)
                      +..++.++.|..||-.++...+-.                  ++   ...+..+.+++ +|++.......+|..+|+++-
T Consensus       158 iLSSadd~tVRLWD~rTgt~v~sL------------------~~---~s~VtSlEvs~-dG~ilTia~gssV~Fwdaksf  215 (334)
T KOG0278|consen  158 ILSSADDKTVRLWDHRTGTEVQSL------------------EF---NSPVTSLEVSQ-DGRILTIAYGSSVKFWDAKSF  215 (334)
T ss_pred             EEeeccCCceEEEEeccCcEEEEE------------------ec---CCCCcceeecc-CCCEEEEecCceeEEeccccc
Confidence            666678899999998876432211                  11   12356777888 788777666778999998763


Q ss_pred             e-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE-eC-CCCCCc
Q 018242          128 L-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL-LG-NLSFPN  204 (359)
Q Consensus       128 ~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~-~~~~p~  204 (359)
                      . ++.+.     .| ..+......|+.+ +||+                 ++....+++||-.+++-... .. ......
T Consensus       216 ~~lKs~k-----~P-~nV~SASL~P~k~-~fVa-----------------Gged~~~~kfDy~TgeEi~~~nkgh~gpVh  271 (334)
T KOG0278|consen  216 GLLKSYK-----MP-CNVESASLHPKKE-FFVA-----------------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVH  271 (334)
T ss_pred             cceeecc-----Cc-cccccccccCCCc-eEEe-----------------cCcceEEEEEeccCCceeeecccCCCCceE
Confidence            3 22221     11 2344556778888 9998                 23356799999888754433 22 222345


Q ss_pred             eEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          205 GVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       205 gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .+.|+|||. +|.+.+.+++|..|.....
T Consensus       272 cVrFSPdGE-~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  272 CVRFSPDGE-LYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             EEEECCCCc-eeeccCCCceEEEEEecCC
Confidence            788999998 9999999999999986543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.90  E-value=0.0086  Score=55.72  Aligned_cols=195  Identities=15%  Similarity=0.083  Sum_probs=112.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEecCCCeEEE
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~~g~l~v  112 (359)
                      -..+++||.|-+++.+..+..|..||..+-  ....|.                  .+.+ ..+....+.+++.++.+.+
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr------------------~l~P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR------------------QLQPCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhh------------------ccCcccccccceeeecCCCCeEEE
Confidence            347889999998999999999999998752  233332                  1111 1234557888885555555


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeec---CC-----CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQ---SE-----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      .........+|.++-++.....-   +.     ......++...+.|+.+-.|++.                 +..|.+.
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~-----------------s~DgtlR  294 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC-----------------SYDGTLR  294 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe-----------------cCCCcEE
Confidence            55444566778877655433210   00     01112344456666655455553                 2344555


Q ss_pred             EEeCCC--CcEEEEeCCC-----CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeE-eec--CCC-CCCceEE
Q 018242          185 KYDPAT--KQVTVLLGNL-----SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI-VAQ--LPG-FPDNIKR  253 (359)
Q Consensus       185 ~~d~~~--~~~~~~~~~~-----~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~--~~~-~p~~i~~  253 (359)
                      .||.+.  ...+.+.+..     -.|...+|++|++ ++.+.-.++.|..|+...- ...... +..  .++ -...|.|
T Consensus       295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~F  372 (641)
T KOG0772|consen  295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISF  372 (641)
T ss_pred             EEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEe
Confidence            555432  2333332221     2357889999998 5888888999999986221 111111 111  222 3456899


Q ss_pred             CCCCCEEEEEecCC
Q 018242          254 SPRGGFWVGIHSRR  267 (359)
Q Consensus       254 d~~G~lwv~~~~~~  267 (359)
                      +.+|++..+-....
T Consensus       373 S~dg~~LlSRg~D~  386 (641)
T KOG0772|consen  373 SYDGNYLLSRGFDD  386 (641)
T ss_pred             ccccchhhhccCCC
Confidence            99998777554443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.86  E-value=0.0097  Score=52.95  Aligned_cols=202  Identities=15%  Similarity=0.123  Sum_probs=116.1

Q ss_pred             CCceEEEccCCCeeE-EecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      =-.+++++|-+. +| ++..+..|-.||..+++.+.                    .+........++++++.--.+|-+
T Consensus       153 WVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl--------------------tltGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  153 WVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL--------------------TLTGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             eEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE--------------------eecchhheeeeeeecccCceEEEe
Confidence            345899999877 55 56778899999999985443                    222223446789999744456555


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|-.+|++.+++.+-   ..+ ....+..+...|.-. +.++-                 +.+..+..||..+...
T Consensus       212 gedk~VKCwDLe~nkvIR~---YhG-HlS~V~~L~lhPTld-vl~t~-----------------grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRH---YHG-HLSGVYCLDLHPTLD-VLVTG-----------------GRDSTIRVWDIRTRAS  269 (460)
T ss_pred             cCCCeeEEEechhhhhHHH---hcc-ccceeEEEeccccce-eEEec-----------------CCcceEEEeeecccce
Confidence            5455577889988775321   111 234566777777776 66652                 3344566677766433


Q ss_pred             EE-EeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccc
Q 018242          194 TV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS  271 (359)
Q Consensus       194 ~~-~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~  271 (359)
                      .. +.++......+.+.+ |++  +++.+-+.+|..||+..++.-  ..+.........++.-|+-+++++...+.    
T Consensus       270 V~~l~GH~~~V~~V~~~~~dpq--vit~S~D~tvrlWDl~agkt~--~tlt~hkksvral~lhP~e~~fASas~dn----  341 (460)
T KOG0285|consen  270 VHVLSGHTNPVASVMCQPTDPQ--VITGSHDSTVRLWDLRAGKTM--ITLTHHKKSVRALCLHPKENLFASASPDN----  341 (460)
T ss_pred             EEEecCCCCcceeEEeecCCCc--eEEecCCceEEEeeeccCcee--EeeecccceeeEEecCCchhhhhccCCcc----
Confidence            32 333333334444443 553  566677789999998765321  11111111234456666555666544333    


Q ss_pred             cccccCC-ccceeeecCCc
Q 018242          272 KLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       272 ~~~~~~~-~~g~~~~~~~~  289 (359)
                        +..+. +.|..+.++..
T Consensus       342 --ik~w~~p~g~f~~nlsg  358 (460)
T KOG0285|consen  342 --IKQWKLPEGEFLQNLSG  358 (460)
T ss_pred             --ceeccCCccchhhcccc
Confidence              44443 46666666443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.86  E-value=0.007  Score=52.51  Aligned_cols=156  Identities=13%  Similarity=0.080  Sum_probs=98.1

Q ss_pred             cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE--eCCCCCCceEEEccCCCEEEEEe
Q 018242          142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAE  219 (359)
Q Consensus       142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~p~gia~~~d~~~l~v~~  219 (359)
                      .+-.++.+..+|. ||-+.-.               -..+.|.++|++++++...  ....-+.+|+++..|  .+|..-
T Consensus        45 aFTQGL~~~~~g~-LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT  106 (264)
T PF05096_consen   45 AFTQGLEFLDDGT-LYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT  106 (264)
T ss_dssp             -EEEEEEEEETTE-EEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred             ccCccEEecCCCE-EEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence            4667899988888 9998532               1235799999999876532  233345689998754  489988


Q ss_pred             cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecc
Q 018242          220 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       220 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  299 (359)
                      ..++..++||.+.  ......+ ..++-..|++.|. ..||+++..                                  
T Consensus       107 Wk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg-~~Li~SDGS----------------------------------  148 (264)
T PF05096_consen  107 WKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG-KRLIMSDGS----------------------------------  148 (264)
T ss_dssp             SSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS-SCEEEE-SS----------------------------------
T ss_pred             ecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC-CEEEEECCc----------------------------------
Confidence            8999999999643  2222222 2344567899763 358887642                                  


Q ss_pred             cccCcceEEEEECCC-CCEEEEEEc-cCCceeeceEEEEEeCCEEEEecCCCCeEEEEcCCC
Q 018242          300 KLSGNGGMAMRISEQ-GNVLEILEE-IGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS  359 (359)
Q Consensus       300 ~~~~~~~~~~~~~~~-g~~~~~~~~-~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~~~  359 (359)
                            ..+...||+ -+....+.. .+|.++..+.++.-.+|.||.--|.++.|.++++.+
T Consensus       149 ------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  149 ------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             ------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred             ------cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence                  234445553 233333332 256777778888777999999999999999999865

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PTZ00421 coronin; Provisional

Probab=97.83  E-value=0.0053  Score=59.17  Aligned_cols=160  Identities=13%  Similarity=0.090  Sum_probs=94.9

Q ss_pred             CceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      -.++++.|++ ++++++..++.|..||..+++...                    .+.........+++++ ++.++++.
T Consensus       128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~--------------------~l~~h~~~V~sla~sp-dG~lLatg  186 (493)
T PTZ00421        128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--------------------VIKCHSDQITSLEWNL-DGSLLCTT  186 (493)
T ss_pred             EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE--------------------EEcCCCCceEEEEEEC-CCCEEEEe
Confidence            3478899875 567788889999999998763221                    1222223467889999 66665554


Q ss_pred             CC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .. +.|..+|+.+++....... .  .......+.+.++++ ..++...+             ....+.|..||......
T Consensus       187 s~Dg~IrIwD~rsg~~v~tl~~-H--~~~~~~~~~w~~~~~-~ivt~G~s-------------~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        187 SKDKKLNIIDPRDGTIVSSVEA-H--ASAKSQRCLWAKRKD-LIITLGCS-------------KSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             cCCCEEEEEECCCCcEEEEEec-C--CCCcceEEEEcCCCC-eEEEEecC-------------CCCCCeEEEEeCCCCCC
Confidence            44 4588899987764321111 1  111223456777776 44442110             11245688888764321


Q ss_pred             --EEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 --TVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 --~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                        .....+ ........+++|++.+|++...++.|..|++...
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence              111111 1122234678999988888777889999998654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.82  E-value=0.0045  Score=56.97  Aligned_cols=221  Identities=12%  Similarity=0.101  Sum_probs=126.9

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      +.-..++++|..-.=++.+...++..|+..+.+...                    .+........++.|-. ||+|+.+
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k--------------------~~srFk~~v~s~~fR~-DG~Llaa   85 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRK--------------------TFSRFKDVVYSVDFRS-DGRLLAA   85 (487)
T ss_pred             CcceeEecCCCCCCceEEecccEEEEEecchhhhhh--------------------hHHhhccceeEEEeec-CCeEEEc
Confidence            444577777753312333333578888776642211                    1112223356777877 8898887


Q ss_pred             eCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ....| +..||.+++..-   ..... ....++-..+.++++.++++-                 +....+-.+|.++..
T Consensus        86 GD~sG~V~vfD~k~r~iL---R~~~a-h~apv~~~~f~~~d~t~l~s~-----------------sDd~v~k~~d~s~a~  144 (487)
T KOG0310|consen   86 GDESGHVKVFDMKSRVIL---RQLYA-HQAPVHVTKFSPQDNTMLVSG-----------------SDDKVVKYWDLSTAY  144 (487)
T ss_pred             cCCcCcEEEeccccHHHH---HHHhh-ccCceeEEEecccCCeEEEec-----------------CCCceEEEEEcCCcE
Confidence            44434 777886653211   10110 111345567788877566552                 223345556776655


Q ss_pred             EEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCC-CceEECCCCCEEEEEecCCCc
Q 018242          193 VTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFP-DNIKRSPRGGFWVGIHSRRKG  269 (359)
Q Consensus       193 ~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p-~~i~~d~~G~lwv~~~~~~~~  269 (359)
                      +.. +..+-....-.++.|...++++++..++.|..||.....    ....+ ..+.| ..+.+=+.|.+.++..++...
T Consensus       145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vk  220 (487)
T KOG0310|consen  145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASAGGNSVK  220 (487)
T ss_pred             EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEE
Confidence            431 223334456777888777899999999999999975432    11122 23444 566666888888877776533


Q ss_pred             cccccccCCccceeeecCCccceeeeeecccccCc
Q 018242          270 ISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      +|+.    ...|+++.......+.++++++..++.
T Consensus       221 VWDl----~~G~qll~~~~~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  221 VWDL----TTGGQLLTSMFNHNKTVTCLRLASDST  251 (487)
T ss_pred             EEEe----cCCceehhhhhcccceEEEEEeecCCc
Confidence            2222    235677766665667888888776543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.81  E-value=0.00022  Score=51.15  Aligned_cols=58  Identities=17%  Similarity=0.338  Sum_probs=42.6

Q ss_pred             EEEEecCCCeEEEEeCC------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeC
Q 018242          100 GLCFNKTNGDLYIADAY------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDS  161 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~  161 (359)
                      ++.+++++|.+|+++..                  +++.++|+.+++.+.+..     ...+||++++++|+.++.|++.
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----GLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----EESSEEEEEE-TTSSEEEEEEG
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----CCCccCeEEEcCCCCEEEEEec
Confidence            56778745999998731                  249999999999887766     3568999999999998999854


Q ss_pred             C
Q 018242          162 S  162 (359)
Q Consensus       162 ~  162 (359)
                      .
T Consensus        77 ~   77 (89)
T PF03088_consen   77 G   77 (89)
T ss_dssp             G
T ss_pred             c
Confidence            3

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.80  E-value=0.00066  Score=62.24  Aligned_cols=187  Identities=12%  Similarity=0.161  Sum_probs=115.1

Q ss_pred             CCceEEEcc-CCCeeEEecCCCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        35 ~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      +-.++.+-| .|.++..+..++.|+.||.-..  -+++|                     .........++++. +|.-|
T Consensus       216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf---------------------~gH~k~Vrd~~~s~-~g~~f  273 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF---------------------KGHRKPVRDASFNN-CGTSF  273 (503)
T ss_pred             ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh---------------------hcchhhhhhhhccc-cCCee
Confidence            344555666 6887778889999999987542  12222                     12212235677777 55555


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      .+...+ -|-.+|.++|++......     ...|..+.+.|++..++++                 +...+.|..||..+
T Consensus       274 LS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~-----------------G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  274 LSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLV-----------------GGSDKKIRQWDIRS  331 (503)
T ss_pred             eeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEE-----------------ecCCCcEEEEeccc
Confidence            554444 477789999987654331     1246678888888338887                 23457899999987


Q ss_pred             CcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          191 KQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       191 ~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      +++.. +..++...+.|.|-++|+ -+++.++...+..|+...+...+..........| .+...|+|..+++.....
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN  407 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDN  407 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCc-ceecCCCCCeehhhccCc
Confidence            76432 234456678899988887 6888889899999986544222222222222222 355566665555554433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.79  E-value=0.0017  Score=63.40  Aligned_cols=190  Identities=17%  Similarity=0.205  Sum_probs=115.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ....++++++=|+..+++...|.|-++|.+.+-.+ .|.+.                  ........|++.|. -+++.|
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~------------------~ah~~~V~gla~D~-~n~~~v  509 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS------------------PAHKGEVTGLAVDG-TNRLLV  509 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC------------------ccccCceeEEEecC-CCceEE
Confidence            45567888888998899999999999999876321 22111                  12234568999998 667777


Q ss_pred             EeCCCcEE-EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFGLL-KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +....|+. .++.+++....-...  +   ..+..+.-..... +++...                . .-.|..+|..+.
T Consensus       510 sa~~~Gilkfw~f~~k~l~~~l~l--~---~~~~~iv~hr~s~-l~a~~~----------------d-df~I~vvD~~t~  566 (910)
T KOG1539|consen  510 SAGADGILKFWDFKKKVLKKSLRL--G---SSITGIVYHRVSD-LLAIAL----------------D-DFSIRVVDVVTR  566 (910)
T ss_pred             EccCcceEEEEecCCcceeeeecc--C---CCcceeeeeehhh-hhhhhc----------------C-ceeEEEEEchhh
Confidence            65566755 456665542211110  0   1222333332222 222210                1 125888888765


Q ss_pred             cEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCc
Q 018242          192 QVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG  269 (359)
Q Consensus       192 ~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~  269 (359)
                      ++. .+.+.....+.++|+|||++|..+. .++.|..||+.....-+.  + .+...+-++.++|.|.+..+++.+...
T Consensus       567 kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~wDlpt~~lID~--~-~vd~~~~sls~SPngD~LAT~Hvd~~g  641 (910)
T KOG1539|consen  567 KVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTWDLPTGTLIDG--L-LVDSPCTSLSFSPNGDFLATVHVDQNG  641 (910)
T ss_pred             hhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEEeccCcceeee--E-ecCCcceeeEECCCCCEEEEEEecCce
Confidence            543 3345566778999999999877765 557999999865432211  1 123334678888999888777766544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.78  E-value=0.04  Score=53.33  Aligned_cols=128  Identities=13%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      +|+ +|+...++.|+.+|..+++...-...... ..   +      .....  ...++++.. ++.+|+++..+.|+.+|
T Consensus        61 ~g~-vy~~~~~g~l~AlD~~tG~~~W~~~~~~~-~~---~------~~~~~--~~~g~~~~~-~~~V~v~~~~g~v~AlD  126 (488)
T cd00216          61 DGD-MYFTTSHSALFALDAATGKVLWRYDPKLP-AD---R------GCCDV--VNRGVAYWD-PRKVFFGTFDGRLVALD  126 (488)
T ss_pred             CCE-EEEeCCCCcEEEEECCCChhhceeCCCCC-cc---c------ccccc--ccCCcEEcc-CCeEEEecCCCeEEEEE
Confidence            566 88888889999999988753321110000 00   0      00000  012333332 38999988766799999


Q ss_pred             CCCCeEEEEeecCCCc--cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          124 PEGGLATAVATQSEGI--PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~--~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      .++|+..-........  ....-....+. ++. +|++.....+.         .....+.|+.+|.++|+....
T Consensus       127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~---------~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         127 AETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFF---------ACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccc---------cCCCCcEEEEEECCCCceeeE
Confidence            9998865332211110  00001122333 255 77764321110         012246799999998887654

The alignment model contains an 8-bladed beta-propeller.

>PTZ00420 coronin; Provisional

Probab=97.76  E-value=0.049  Score=53.29  Aligned_cols=120  Identities=9%  Similarity=0.013  Sum_probs=72.7

Q ss_pred             CCcceEEEEecCCCeEEEE-eCCCcEEEEeCCCCe--EEEEee---cCCCccccccceEEEeCCCCEEEEEeCCCccccc
Q 018242           95 CGRPLGLCFNKTNGDLYIA-DAYFGLLKVGPEGGL--ATAVAT---QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR  168 (359)
Q Consensus        95 ~~~p~gi~~~~~~g~l~v~-~~~~~i~~~~~~~~~--~~~~~~---~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~  168 (359)
                      ......+++++.+++++++ ...+.|..++..++.  ...+..   ...+ ....+..++++|++..+.++-        
T Consensus        74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSg--------  144 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSS--------  144 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEE--------
Confidence            3456789999854565555 433457778876432  111000   0111 123577899999987344441        


Q ss_pred             cceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          169 NHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       169 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                               +..+.|..||..+++.............++|+++|+. +++...++.|..||+...
T Consensus       145 ---------S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        145 ---------GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             ---------eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCC
Confidence                     2356788899887654332222234678999999984 555556789999998654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.75  E-value=0.0068  Score=55.82  Aligned_cols=205  Identities=14%  Similarity=0.085  Sum_probs=120.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...++.|-+||+++.++...|.|..+|.++....                    ..+.......+-+.|.++++.+++..
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL--------------------R~~~ah~apv~~~~f~~~d~t~l~s~  129 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL--------------------RQLYAHQAPVHVTKFSPQDNTMLVSG  129 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEeccccHHHH--------------------HHHhhccCceeEEEecccCCeEEEec
Confidence            5668888899997778888899999996553100                    01222223345677889889988876


Q ss_pred             CCCcEE-EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLL-KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+++. .+|..+..++ ...  .+ .-..+....+.|...++.++                 ++.+|.|-.||..+...
T Consensus       130 sDd~v~k~~d~s~a~v~-~~l--~~-htDYVR~g~~~~~~~hivvt-----------------GsYDg~vrl~DtR~~~~  188 (487)
T KOG0310|consen  130 SDDKVVKYWDLSTAYVQ-AEL--SG-HTDYVRCGDISPANDHIVVT-----------------GSYDGKVRLWDTRSLTS  188 (487)
T ss_pred             CCCceEEEEEcCCcEEE-EEe--cC-CcceeEeeccccCCCeEEEe-----------------cCCCceEEEEEeccCCc
Confidence            555655 4577777653 211  11 11245566777665558887                 45578888899875432


Q ss_pred             EEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-CCcceeEeecCCCCCCceEECCCC-CEEEEEecCCCcc
Q 018242          194 TVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRRKGI  270 (359)
Q Consensus       194 ~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~~~~~~  270 (359)
                      ... ..+....+.+.+-|.|. ++++. .++.+.+||+..+ +....  ..+...-...+.+..++ +|+.+..+.+   
T Consensus       189 ~v~elnhg~pVe~vl~lpsgs-~iasA-gGn~vkVWDl~~G~qll~~--~~~H~KtVTcL~l~s~~~rLlS~sLD~~---  261 (487)
T KOG0310|consen  189 RVVELNHGCPVESVLALPSGS-LIASA-GGNSVKVWDLTTGGQLLTS--MFNHNKTVTCLRLASDSTRLLSGSLDRH---  261 (487)
T ss_pred             eeEEecCCCceeeEEEcCCCC-EEEEc-CCCeEEEEEecCCceehhh--hhcccceEEEEEeecCCceEeecccccc---
Confidence            221 22333345566667765 55554 5678999998743 21110  00001112346665565 5777776655   


Q ss_pred             ccccccCC-ccceeeecCCcc
Q 018242          271 SKLVLSFP-WIGNVLIKLPID  290 (359)
Q Consensus       271 ~~~~~~~~-~~g~~~~~~~~~  290 (359)
                         +.+|+ -+-++...+..+
T Consensus       262 ---VKVfd~t~~Kvv~s~~~~  279 (487)
T KOG0310|consen  262 ---VKVFDTTNYKVVHSWKYP  279 (487)
T ss_pred             ---eEEEEccceEEEEeeecc
Confidence               56665 466777666554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.74  E-value=0.034  Score=50.78  Aligned_cols=143  Identities=14%  Similarity=0.135  Sum_probs=83.5

Q ss_pred             cceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           97 RPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ..+++...+ .|+.+++....+ ....|..++..-......  ...-.....+++|||. |+.+                
T Consensus       305 ~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--~s~v~~ts~~fHpDgL-ifgt----------------  364 (506)
T KOG0289|consen  305 PVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE--TSDVEYTSAAFHPDGL-IFGT----------------  364 (506)
T ss_pred             cceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec--cccceeEEeeEcCCce-EEec----------------
Confidence            346788888 677666654544 555566666532222110  1112355789999998 7777                


Q ss_pred             ecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC-CCCceEE
Q 018242          176 SGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKR  253 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~  253 (359)
                       +...+.|-.||.+.+... .+..+-.....|+|+.+|- .+++..+++.|..||+...+  .++.+..-.. ....+.+
T Consensus       365 -gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~f  440 (506)
T KOG0289|consen  365 -GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSF  440 (506)
T ss_pred             -cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEE
Confidence             234566777887765422 2222233346899987764 45555666779999986432  2333322111 1456899


Q ss_pred             CCCCCEEEEE
Q 018242          254 SPRGGFWVGI  263 (359)
Q Consensus       254 d~~G~lwv~~  263 (359)
                      |..|.+.+..
T Consensus       441 D~SGt~L~~~  450 (506)
T KOG0289|consen  441 DQSGTYLGIA  450 (506)
T ss_pred             cCCCCeEEee
Confidence            9999766644

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=97.68  E-value=0.059  Score=51.86  Aligned_cols=193  Identities=13%  Similarity=-0.016  Sum_probs=113.3

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      .++-+.-.+-|++++.+.|+ ||....+|.|..||+.+.+-+.                    ..+..++..+.|++.+.
T Consensus        63 vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~--------------------~~d~~gg~IWsiai~p~  121 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY--------------------NIDSNGGAIWSIAINPE  121 (691)
T ss_pred             EEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeE--------------------EecCCCcceeEEEeCCc
Confidence            55556667889999997777 9999888999999998763221                    33444556788888886


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +..+-|+-..+-++.++...++.+.. ..... ....+-.+.++++|.++..+                  .-+|.|..+
T Consensus       122 ~~~l~IgcddGvl~~~s~~p~~I~~~-r~l~r-q~sRvLslsw~~~~~~i~~G------------------s~Dg~Iriw  181 (691)
T KOG2048|consen  122 NTILAIGCDDGVLYDFSIGPDKITYK-RSLMR-QKSRVLSLSWNPTGTKIAGG------------------SIDGVIRIW  181 (691)
T ss_pred             cceEEeecCCceEEEEecCCceEEEE-eeccc-ccceEEEEEecCCccEEEec------------------ccCceEEEE
Confidence            67777774333355556555655432 11111 12355678888998755554                  224557778


Q ss_pred             eCCCCcEEEEe----CCCCC-----CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCC
Q 018242          187 DPATKQVTVLL----GNLSF-----PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  257 (359)
Q Consensus       187 d~~~~~~~~~~----~~~~~-----p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  257 (359)
                      |..++....+.    .+...     ..++.+-.|+  .+++.-..+.|.-||.....+.  +.+.-..+-.-.+++++++
T Consensus       182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLi--qS~~~h~adVl~Lav~~~~  257 (691)
T KOG2048|consen  182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLI--QSHSCHDADVLALAVADNE  257 (691)
T ss_pred             EcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchh--hhhhhhhcceeEEEEcCCC
Confidence            87765443311    11111     2355555666  4566556689999986433221  1111111223347777765


Q ss_pred             C-EEEEEe
Q 018242          258 G-FWVGIH  264 (359)
Q Consensus       258 ~-lwv~~~  264 (359)
                      + ++.+.-
T Consensus       258 d~vfsaGv  265 (691)
T KOG2048|consen  258 DRVFSAGV  265 (691)
T ss_pred             CeEEEccC
Confidence            4 444443

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.64  E-value=0.04  Score=48.86  Aligned_cols=214  Identities=18%  Similarity=0.166  Sum_probs=116.4

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      .+..-.+..|=+++..++  .+|+++.. .|+++-...+-.... +.....+.+==|..    ......-..+-|++ . 
T Consensus        42 ~~~~r~F~r~MGl~~~~~--~l~~~t~~-qiw~f~~~~n~l~~~-~~~~~~D~~yvPr~----~~~TGdidiHdia~-~-  111 (335)
T TIGR03032        42 DVFERTFPRPMGLAVSPQ--SLTLGTRY-QLWRFANVDNLLPAG-QTHPGYDRLYVPRA----SYVTGDIDAHDLAL-G-  111 (335)
T ss_pred             EEEeeccCccceeeeeCC--eEEEEEcc-eeEEccccccccccc-ccCCCCCeEEeeee----eeeccCcchhheee-c-
Confidence            444445667778877554  38888874 577772211100000 00000000000000    00111123456778 3 


Q ss_pred             CCeEEEEeC-CCcEEEEeCCCCeEEEEee----cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          107 NGDLYIADA-YFGLLKVGPEGGLATAVAT----QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       107 ~g~l~v~~~-~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      ++.+|+.+. .+.|..+++.-.-+....+    ......--..|+++.. +|+--||+-.+..-....|.    +....|
T Consensus       112 ~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR----~~~~~g  186 (335)
T TIGR03032       112 AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWR----EGRRDG  186 (335)
T ss_pred             CCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCccccc----ccccCC
Confidence            667776654 4678888876432211111    1111112356888885 45558887433211111111    222334


Q ss_pred             eEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEE-
Q 018242          182 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW-  260 (359)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-  260 (359)
                      ++. +|..+++  .+..++..|.+.-+. +|+ ||+.++..+.+.++|.+.   +..+.+..++++|.|+.+.  |++. 
T Consensus       187 G~v-idv~s~e--vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va~vpG~~rGL~f~--G~llv  256 (335)
T TIGR03032       187 GCV-IDIPSGE--VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVAFLPGFTRGLAFA--GDFAF  256 (335)
T ss_pred             eEE-EEeCCCC--EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEEECCCCCccccee--CCEEE
Confidence            443 6666664  355777888877775 565 999999999999998643   4567777789999999997  7755 


Q ss_pred             EEEec
Q 018242          261 VGIHS  265 (359)
Q Consensus       261 v~~~~  265 (359)
                      |+...
T Consensus       257 VgmSk  261 (335)
T TIGR03032       257 VGLSK  261 (335)
T ss_pred             EEecc
Confidence            55544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.63  E-value=0.013  Score=54.34  Aligned_cols=189  Identities=13%  Similarity=0.113  Sum_probs=112.2

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      .+-+|+..+|-.......+. +++++..+.|..=+.+++ +...                    ......+..|++..| 
T Consensus       322 ~~elPe~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~-f~~~--------------------v~gh~delwgla~hp-  378 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGD-ILVGTTRNFILQGTLENG-FTLT--------------------VQGHGDELWGLATHP-  378 (626)
T ss_pred             cccCchhcCCeeEEecCCCc-EEEeeccceEEEeeecCC-ceEE--------------------EEecccceeeEEcCC-
Confidence            33444444444333334455 888888888876665543 3221                    112223578999999 


Q ss_pred             CCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      ..+++++..+.+ +..++-+.-.++....       .....+.++|.|. +-++                  ...|..++
T Consensus       379 s~~q~~T~gqdk~v~lW~~~k~~wt~~~~-------d~~~~~~fhpsg~-va~G------------------t~~G~w~V  432 (626)
T KOG2106|consen  379 SKNQLLTCGQDKHVRLWNDHKLEWTKIIE-------DPAECADFHPSGV-VAVG------------------TATGRWFV  432 (626)
T ss_pred             ChhheeeccCcceEEEccCCceeEEEEec-------CceeEeeccCcce-EEEe------------------eccceEEE
Confidence            667777655554 5555622111221111       1234678889984 7666                  34577888


Q ss_pred             EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-CCCCCceEECCCCCEEEEEe
Q 018242          186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwv~~~  264 (359)
                      +|.++..+..+......-+.++++|||..+-+ .+-++.|+.|.++.++.. +...... .....-+.++.|++..++..
T Consensus       433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv-gs~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV-GSHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             EecccceeEEEEecCCceEEEEEcCCCCEEEE-ecCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEecc
Confidence            99887666666666555678999999986544 567789999988765322 2222221 22234577778887777665


Q ss_pred             cC
Q 018242          265 SR  266 (359)
Q Consensus       265 ~~  266 (359)
                      .+
T Consensus       511 ~d  512 (626)
T KOG2106|consen  511 GD  512 (626)
T ss_pred             Cc
Confidence            43

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.62  E-value=0.0072  Score=50.77  Aligned_cols=120  Identities=11%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      .|++++.++..+..+...    ....+++++++|+|+++.+...                .....|..||.+...+..+.
T Consensus        40 ~l~~~~~~~~~~~~i~l~----~~~~I~~~~WsP~g~~favi~g----------------~~~~~v~lyd~~~~~i~~~~   99 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELK----KEGPIHDVAWSPNGNEFAVIYG----------------SMPAKVTLYDVKGKKIFSFG   99 (194)
T ss_pred             EEEEEecCCCccceeecc----CCCceEEEEECcCCCEEEEEEc----------------cCCcccEEEcCcccEeEeec
Confidence            477777666554433211    1124789999999996555521                11235777887644433332


Q ss_pred             CCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEe
Q 018242          198 GNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       198 ~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~  264 (359)
                        ....+.+.++|+|+.+.+++..  .+.|..||....     +.+.. .......++++|+|+..++..
T Consensus       100 --~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  100 --TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             --CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEEEE
Confidence              2345789999999988887644  357999997532     22222 122245689999999777554

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.016  Score=53.51  Aligned_cols=162  Identities=17%  Similarity=0.258  Sum_probs=86.6

Q ss_pred             EEEEecCCCeEEEEeCCC--------------cEEEEeCCCCeEEEEeecCC-----CccccccceEEEeCC-CCEEEEE
Q 018242          100 GLCFNKTNGDLYIADAYF--------------GLLKVGPEGGLATAVATQSE-----GIPFRFCNSLDIDQS-TGIIYFT  159 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~--------------~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~d~~-g~~l~v~  159 (359)
                      -|+|++ +|+|||+....              .+.+++..+...  ......     ...+.++.+++++|. |. ||++
T Consensus       181 ~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~--~d~p~~~~~i~s~G~RN~qGl~w~P~tg~-Lw~~  256 (399)
T COG2133         181 RLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIP--ADNPFPNSEIWSYGHRNPQGLAWHPVTGA-LWTT  256 (399)
T ss_pred             cEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCcccc--cCCCCCCcceEEeccCCccceeecCCCCc-EEEE
Confidence            589999 78999985322              144444332110  000111     123568889999999 77 9999


Q ss_pred             eCCCcccc-ccceeeeeecCCCceEEEE---eCCC-----CcEE--EE-----eCCCCCCceEEEccCC------CEEEE
Q 018242          160 DSSSQFQR-RNHISVILSGDKTGRLMKY---DPAT-----KQVT--VL-----LGNLSFPNGVALSEDG------NYILL  217 (359)
Q Consensus       160 d~~~~~~~-~~~~~~~~~~~~~g~v~~~---d~~~-----~~~~--~~-----~~~~~~p~gia~~~d~------~~l~v  217 (359)
                      +.+.+..+ .++...+-.+...|--+++   +.++     ....  ..     ...-..|.|++|....      +.+++
T Consensus       257 e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV  336 (399)
T COG2133         257 EHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFV  336 (399)
T ss_pred             ecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEE
Confidence            98764321 1111111111222221111   0000     0000  00     1112346899998431      34899


Q ss_pred             EecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEec
Q 018242          218 AETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       218 ~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      +...+-.+.+.+.+++..-..+.+..  ..+.|.++++.+||.|++++..
T Consensus       337 ~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~  386 (399)
T COG2133         337 GAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ  386 (399)
T ss_pred             EeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence            98877667776554431111222222  4478999999999999998865

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=97.60  E-value=0.041  Score=47.95  Aligned_cols=188  Identities=15%  Similarity=0.137  Sum_probs=108.1

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..+.|+|+|..+..+..+..|+.|+..+.. +-+.                  ......+...++-+.+++..++-+...
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~------------------~lkgHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFW------------------VLKGHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccc-ccee------------------eeccccceeEeeeeccCCCEEEEecCC
Confidence            467899999966777888999999965431 1110                  223344567788888855666666656


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      ..++.+|.++|+...-.. .   ....+|.+.....|- ..|+.                ++..+.+-.+|..++.....
T Consensus       112 k~v~~wD~~tG~~~rk~k-~---h~~~vNs~~p~rrg~-~lv~S----------------gsdD~t~kl~D~R~k~~~~t  170 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHK-G---HTSFVNSLDPSRRGP-QLVCS----------------GSDDGTLKLWDIRKKEAIKT  170 (338)
T ss_pred             ceEEEEecccceeeehhc-c---ccceeeecCccccCC-eEEEe----------------cCCCceEEEEeecccchhhc
Confidence            679999999987543211 1   123566666556666 44442                23456777888764332222


Q ss_pred             eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .........++|..++... .+.--++.|..||+..+....  ..........+|...++|....+..+..
T Consensus       171 ~~~kyqltAv~f~d~s~qv-~sggIdn~ikvWd~r~~d~~~--~lsGh~DtIt~lsls~~gs~llsnsMd~  238 (338)
T KOG0265|consen  171 FENKYQLTAVGFKDTSDQV-ISGGIDNDIKVWDLRKNDGLY--TLSGHADTITGLSLSRYGSFLLSNSMDN  238 (338)
T ss_pred             cccceeEEEEEecccccce-eeccccCceeeeccccCcceE--EeecccCceeeEEeccCCCccccccccc
Confidence            1111223456666555544 444456788999875432110  0111112235677777777666655544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=97.60  E-value=0.038  Score=47.48  Aligned_cols=190  Identities=12%  Similarity=0.047  Sum_probs=114.1

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      .|-...+|.+||.+.-+.....|=...++..-                    ......+..+.+.+|.+...+..+...+
T Consensus        15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------------------ty~GHtGavW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen   15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------------------TYDGHTGAVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             eEEecCCCcEEEEecCCCCceEEEecCCceee--------------------eecCCCceEEEEEecCCcceeeeccccc
Confidence            57788899989988888766666543332110                    2234446677888888555555555555


Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-------
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-------  190 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-------  190 (359)
                      .+..+|.++|+........     ..+..+-++.+|+.+.++....             ....+.|..++...       
T Consensus        75 t~kLWDv~tGk~la~~k~~-----~~Vk~~~F~~~gn~~l~~tD~~-------------mg~~~~v~~fdi~~~~~~~~s  136 (327)
T KOG0643|consen   75 TAKLWDVETGKQLATWKTN-----SPVKRVDFSFGGNLILASTDKQ-------------MGYTCFVSVFDIRDDSSDIDS  136 (327)
T ss_pred             eeEEEEcCCCcEEEEeecC-----CeeEEEeeccCCcEEEEEehhh-------------cCcceEEEEEEccCChhhhcc
Confidence            6888999999864333211     2345678899999433332111             12334566666541       


Q ss_pred             Cc-EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          191 KQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       191 ~~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .+ +..+...-..+....+++-++ .+++.-.++.|.+||+..+... .+.-.......++|.+.++...+++.....
T Consensus       137 ~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt  212 (327)
T KOG0643|consen  137 EEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDT  212 (327)
T ss_pred             cCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCc
Confidence            22 222333335566777888888 4666778899999997654110 011011223467899999999888665543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.59  E-value=0.0014  Score=63.99  Aligned_cols=150  Identities=13%  Similarity=0.094  Sum_probs=101.0

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+++.|.-++.+..+..+|-+..||.++..+..                    . ......+.++......+-+.++...
T Consensus       497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~--------------------~-l~l~~~~~~iv~hr~s~l~a~~~dd  555 (910)
T KOG1539|consen  497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK--------------------S-LRLGSSITGIVYHRVSDLLAIALDD  555 (910)
T ss_pred             eEEEecCCCceEEEccCcceEEEEecCCcceee--------------------e-eccCCCcceeeeeehhhhhhhhcCc
Confidence            389999999977888888888899988763221                    1 1222335567666633444444334


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      -.|..+|..+.++.+..   .+ ....++++.++|||++|..+                  ..++.|..||..++.+.-.
T Consensus       556 f~I~vvD~~t~kvvR~f---~g-h~nritd~~FS~DgrWlisa------------------smD~tIr~wDlpt~~lID~  613 (910)
T KOG1539|consen  556 FSIRVVDVVTRKVVREF---WG-HGNRITDMTFSPDGRWLISA------------------SMDSTIRTWDLPTGTLIDG  613 (910)
T ss_pred             eeEEEEEchhhhhhHHh---hc-cccceeeeEeCCCCcEEEEe------------------ecCCcEEEEeccCcceeee
Confidence            47899998877653211   11 12468899999999944444                  3356799999887765432


Q ss_pred             eCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      ..-...+..+.++|.|..|..+-.+.++|+.|.
T Consensus       614 ~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  614 LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            222334578899999999888888889999996

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.048  Score=47.42  Aligned_cols=208  Identities=17%  Similarity=0.220  Sum_probs=102.5

Q ss_pred             eEEEEecCCCe-EEEEeC-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242           99 LGLCFNKTNGD-LYIADA-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        99 ~gi~~~~~~g~-l~v~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ++|+++|.-.. +.++-. +.-.+.+|+.+++.........+ . .+--.-++++||+.||.++...+            
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-R-HfyGHGvfs~dG~~LYATEndfd------------  136 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-R-HFYGHGVFSPDGRLLYATENDFD------------  136 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-c-eeecccccCCCCcEEEeecCCCC------------
Confidence            45666553322 223321 11255677776653322221111 1 12223478999999999854422            


Q ss_pred             cCCCceEEEEeCCCCcEEE---EeCCCCCCceEEEccCCCEEEEEecCCCEEEEE--------EcCCCCCcceeEe----
Q 018242          177 GDKTGRLMKYDPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRY--------WLKTSKAGTIEIV----  241 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~---~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~--------~~~~~~~~~~~~~----  241 (359)
                       ...|-|-.||.. ..+..   +......|..+.+.+||+++.+++   ++|..-        +++.-+. ....+    
T Consensus       137 -~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan---GGIethpdfgR~~lNldsMeP-Slvlld~at  210 (366)
T COG3490         137 -PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN---GGIETHPDFGRTELNLDSMEP-SLVLLDAAT  210 (366)
T ss_pred             -CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeC---CceecccccCccccchhhcCc-cEEEEeccc
Confidence             223456667765 33333   334556788999999999887775   333332        2221110 01101    


Q ss_pred             ---ecCCCCC--------CceEECCCCCEEEEEecCCC--ccccccccCCccceeeecCCccceee-------eeecccc
Q 018242          242 ---AQLPGFP--------DNIKRSPRGGFWVGIHSRRK--GISKLVLSFPWIGNVLIKLPIDIVKI-------HSSLVKL  301 (359)
Q Consensus       242 ---~~~~~~p--------~~i~~d~~G~lwv~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~  301 (359)
                         .+...+|        +-++.+++|.+|.++.-.+.  ..-. ++-.-..|+.++.++.+.+..       .++... 
T Consensus       211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~pp-Lvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n-  288 (366)
T COG3490         211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPP-LVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN-  288 (366)
T ss_pred             cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCc-ceeeccCCCcCcccCCCHHHHHHHHhhhhheeec-
Confidence               1111123        44788999999998875432  1111 111223556666666653321       111111 


Q ss_pred             cCcceEEEEECCCCCEEEEEEccCCcee
Q 018242          302 SGNGGMAMRISEQGNVLEILEEIGRKMW  329 (359)
Q Consensus       302 ~~~~~~~~~~~~~g~~~~~~~~~~g~~~  329 (359)
                      ... ..+..-+|.|+....+....|...
T Consensus       289 ~~~-glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         289 RRD-GLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             ccC-CeEEEecCCCCeEEEEEcCCCcEE
Confidence            111 334444678877766655555443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.011  Score=51.19  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             EccCCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           41 FDALGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        41 ~~~~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      +++||++||.+.++     |-|-.||... .+..+.                  ++....-.|+-+.+.+ ||++.+...
T Consensus       121 fs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvg------------------E~~t~GiGpHev~lm~-DGrtlvvan  180 (366)
T COG3490         121 FSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVG------------------EFSTHGIGPHEVTLMA-DGRTLVVAN  180 (366)
T ss_pred             cCCCCcEEEeecCCCCCCCceEEEEeccc-ccceec------------------ccccCCcCcceeEEec-CCcEEEEeC
Confidence            55677777766443     5666777652 343332                  4455556688888888 555554432


Q ss_pred             CC-------------------cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242          116 YF-------------------GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       116 ~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ++                   .+..++..+|.+..-...........+..+.+++||+ +|++..... .+.++      
T Consensus       181 GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G-~~~d~------  252 (366)
T COG3490         181 GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRG-PRNDL------  252 (366)
T ss_pred             CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeC-CCccC------
Confidence            20                   1223332233221100001112345678899999999 999954210 00000      


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCC-------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                          --+.-.-..++.++.+.-.       ....-.||...+...+-++....++...||.+.+
T Consensus       253 ----ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         253 ----PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             ----CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence                0111111222333322110       0123467777666667788888889999997654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=97.52  E-value=0.023  Score=50.63  Aligned_cols=159  Identities=11%  Similarity=0.146  Sum_probs=96.4

Q ss_pred             ceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242           98 PLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ...++++| .++.|++...++ |-.+|..+|+++.-..   + ....+.++++++..-|+|-+                 
T Consensus       154 Vr~vavdP-~n~wf~tgs~DrtikIwDlatg~Lkltlt---G-hi~~vr~vavS~rHpYlFs~-----------------  211 (460)
T KOG0285|consen  154 VRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLT---G-HIETVRGVAVSKRHPYLFSA-----------------  211 (460)
T ss_pred             EEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeec---c-hhheeeeeeecccCceEEEe-----------------
Confidence            45788998 555555544444 6778999998753222   1 23467889999888744444                 


Q ss_pred             cCCCceEEEEeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCce-EEC
Q 018242          177 GDKTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNI-KRS  254 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i-~~d  254 (359)
                       .....|-+||.+.+++.. +.+++.....+++.|--. ++++...+..+.+||+....  ....+.....-...+ +.-
T Consensus       212 -gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~  287 (460)
T KOG0285|consen  212 -GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP  287 (460)
T ss_pred             -cCCCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec
Confidence             234568899998766543 456677788888887554 67777788899999975421  111121111111223 333


Q ss_pred             CCCCEEEEEecCCCccccccccCC-ccceeeecCC
Q 018242          255 PRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLP  288 (359)
Q Consensus       255 ~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~  288 (359)
                      .++.++.++.++.      +..++ ..|+....+.
T Consensus       288 ~dpqvit~S~D~t------vrlWDl~agkt~~tlt  316 (460)
T KOG0285|consen  288 TDPQVITGSHDST------VRLWDLRAGKTMITLT  316 (460)
T ss_pred             CCCceEEecCCce------EEEeeeccCceeEeee
Confidence            4678888887765      34443 2455554443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.48  E-value=0.0057  Score=59.40  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=99.6

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ++..+...--+.+.|.|-|- +|+ +..++.-..|..+...-                    ...+.........+.|.|
T Consensus       487 V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P--------------------lRifaghlsDV~cv~FHP  545 (707)
T KOG0263|consen  487 VIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP--------------------LRIFAGHLSDVDCVSFHP  545 (707)
T ss_pred             EEecCCCcceeeEEecCCce-EEEecCCCceeeeeecccCCc--------------------hhhhcccccccceEEECC
Confidence            45555444445678889987 554 44555555665554310                    002223334456788998


Q ss_pred             CCCeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                       +.+...+ .....+..+|..+|...++..   + ....+..++++|+|+  |++.                ++..+.|.
T Consensus       546 -Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~---G-H~~~V~al~~Sp~Gr--~LaS----------------g~ed~~I~  602 (707)
T KOG0263|consen  546 -NSNYVATGSSDRTVRLWDVSTGNSVRIFT---G-HKGPVTALAFSPCGR--YLAS----------------GDEDGLIK  602 (707)
T ss_pred             -cccccccCCCCceEEEEEcCCCcEEEEec---C-CCCceEEEEEcCCCc--eEee----------------cccCCcEE
Confidence             5554333 223357778888776544432   1 223567899999998  5552                24457788


Q ss_pred             EEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          185 KYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       185 ~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      .||..+++.. .+..+......+.|+.||. +++++..++.|..||+..
T Consensus       603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  603 IWDLANGSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             EEEcCCCcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence            9998775543 2333444567899999998 677777889999999753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=97.48  E-value=0.033  Score=51.21  Aligned_cols=196  Identities=18%  Similarity=0.177  Sum_probs=105.1

Q ss_pred             CCceEEEccCC--CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDALG--EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~G--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...+++|.|.-  +++.++.-.|.|..||..+.+                |...+++-+........+|.|.|.+-..++
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----------------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----------------KDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCC----------------CccCceEEeccCCccccceEecCCChhhee
Confidence            44578888864  456677777999999986431                000122233333344568888875544444


Q ss_pred             EeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +..+.| |...|.+++..+.++....  ......++.+..+...+++++.                  .|..-.+|..++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~--d~~~fs~~d~~~e~~~vl~~~~------------------~G~f~~iD~R~~  311 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDT--DNIWFSSLDFSAESRSVLFGDN------------------VGNFNVIDLRTD  311 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCc--cceeeeeccccCCCccEEEeec------------------ccceEEEEeecC
Confidence            444555 5556787776554433211  1123344455544333555532                  233344554433


Q ss_pred             cE--EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-C-CCCceEECCCC-CEEEEEecC
Q 018242          192 QV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-G-FPDNIKRSPRG-GFWVGIHSR  266 (359)
Q Consensus       192 ~~--~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~p~~i~~d~~G-~lwv~~~~~  266 (359)
                      ..  ..+.-.-....++++.|-..+.+.+.+.+++...||+..-.......+..++ . ..+..+++|.| +|..++.++
T Consensus       312 ~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~  391 (498)
T KOG4328|consen  312 GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN  391 (498)
T ss_pred             CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence            22  2221122356899999988788889889999999998532111101122211 1 23557778854 654444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.45  E-value=0.013  Score=52.60  Aligned_cols=179  Identities=16%  Similarity=0.095  Sum_probs=94.7

Q ss_pred             EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC---------CEE
Q 018242          155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS---------CRI  225 (359)
Q Consensus       155 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~---------~~i  225 (359)
                      ++||.|....             ...++++.+|.+++++.-.......++ ++++||++.+|++++.-         .-|
T Consensus         4 rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv   69 (342)
T PF06433_consen    4 RVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVV   69 (342)
T ss_dssp             EEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEE
Confidence            4899876421             123689999999887764333333334 67899999999987652         236


Q ss_pred             EEEEcCCCCCcceeEeec-C-----CCCCCceEECCCCC-EEEEEecCCCccccccccCCccceeeecCCccce------
Q 018242          226 LRYWLKTSKAGTIEIVAQ-L-----PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV------  292 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~-~-----~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------  292 (359)
                      ..||.+.-... .++... .     ...++.+.+..+|+ ++|.+..-..++   .+++...++++..+++|..      
T Consensus        70 ~~~D~~TL~~~-~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV---tVVDl~~~kvv~ei~~PGC~~iyP~  145 (342)
T PF06433_consen   70 EIWDTQTLSPT-GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV---TVVDLAAKKVVGEIDTPGCWLIYPS  145 (342)
T ss_dssp             EEEETTTTEEE-EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE---EEEETTTTEEEEEEEGTSEEEEEEE
T ss_pred             EEEecCcCccc-ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE---EEEECCCCceeeeecCCCEEEEEec
Confidence            66775432111 111111 1     11355678888886 777666543331   3445568888888877643      


Q ss_pred             ---eeeeecccccCcceEEEEECCCCCEEEEEE---ccCCceeece-EEEEE-eCCEEEEecCCCCeEEEEcC
Q 018242          293 ---KIHSSLVKLSGNGGMAMRISEQGNVLEILE---EIGRKMWRSI-SEVEE-KDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       293 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~g~~~~~~-~~~~~-~~g~l~ig~~~~~~l~~~~~  357 (359)
                         ....+|-+  .. -..+.+|.+|+....-.   ..+.-  +.+ ..... .++++|+-++ +..|.-+++
T Consensus       146 ~~~~F~~lC~D--Gs-l~~v~Ld~~Gk~~~~~t~~F~~~~d--p~f~~~~~~~~~~~~~F~Sy-~G~v~~~dl  212 (342)
T PF06433_consen  146 GNRGFSMLCGD--GS-LLTVTLDADGKEAQKSTKVFDPDDD--PLFEHPAYSRDGGRLYFVSY-EGNVYSADL  212 (342)
T ss_dssp             ETTEEEEEETT--SC-EEEEEETSTSSEEEEEEEESSTTTS---B-S--EEETTTTEEEEEBT-TSEEEEEEE
T ss_pred             CCCceEEEecC--Cc-eEEEEECCCCCEeEeeccccCCCCc--ccccccceECCCCeEEEEec-CCEEEEEec
Confidence               22222222  22 35567788888753321   11111  111 11222 3567777776 555665554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.44  E-value=0.096  Score=48.44  Aligned_cols=151  Identities=16%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-  112 (359)
                      +.-.++++..+|.+|.++..+|.+..|+.+++...++.                     ...+....+.... +|+..+ 
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~---------------------~HkgPI~slKWnk-~G~yilS  293 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG---------------------QHKGPIFSLKWNK-KGTYILS  293 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh---------------------ccCCceEEEEEcC-CCCEEEe
Confidence            45669999999999999999999999999886333321                     1112234566776 554444 


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCcccccc-ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce--EEEEeCC
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFC-NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR--LMKYDPA  189 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~--v~~~d~~  189 (359)
                      +...+.+..+|..++.+.+......     .| -++.+-.+..  |++                 ....+.  |++++.+
T Consensus       294 ~~vD~ttilwd~~~g~~~q~f~~~s-----~~~lDVdW~~~~~--F~t-----------------s~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  294 GGVDGTTILWDAHTGTVKQQFEFHS-----APALDVDWQSNDE--FAT-----------------SSTDGCIHVCKVGED  349 (524)
T ss_pred             ccCCccEEEEeccCceEEEeeeecc-----CCccceEEecCce--Eee-----------------cCCCceEEEEEecCC
Confidence            4444568889998888765432111     12 2233333332  222                 122334  5555544


Q ss_pred             CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      + -...+.++-...+++.++|.+. |+.+.+.+.++..|....
T Consensus       350 ~-P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  350 R-PVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             C-cceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCC
Confidence            2 3334444555678999999887 788888999999998654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.44  E-value=0.041  Score=50.28  Aligned_cols=122  Identities=13%  Similarity=0.088  Sum_probs=69.3

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC-C--CCCceEEEccCCCEEEEEe
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-L--SFPNGVALSEDGNYILLAE  219 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~--~~p~gia~~~d~~~l~v~~  219 (359)
                      .++++...|.|.|+.-++                  ..++....|..++........ .  -.-...+|.|||. ++.+.
T Consensus       305 ~V~~ls~h~tgeYllsAs------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg  365 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSAS------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG  365 (506)
T ss_pred             cceeeeeccCCcEEEEec------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc
Confidence            456788889998444332                  233444455555544333222 1  1235678999995 89999


Q ss_pred             cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCcc
Q 018242          220 TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID  290 (359)
Q Consensus       220 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  290 (359)
                      +.++.|..||++...  ....|....+-...|.|..+|.+.++.-+.+.     +..++ ++-+.++.++.+
T Consensus       366 t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~-----V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGS-----VKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCe-----EEEEEehhhcccceeecc
Confidence            999999999986542  11112222233456899888854444444442     44444 344455555443

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.44  E-value=0.0037  Score=60.51  Aligned_cols=121  Identities=18%  Similarity=0.325  Sum_probs=74.4

Q ss_pred             CcceEEEEecCCCeEEEEeC-CC-------------------cEEEEeCCCC-------eEEEEeecC------------
Q 018242           96 GRPLGLCFNKTNGDLYIADA-YF-------------------GLLKVGPEGG-------LATAVATQS------------  136 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~-~~-------------------~i~~~~~~~~-------~~~~~~~~~------------  136 (359)
                      .+|-++.+++.++.+|++.. ..                   .|+++++.++       .+..+....            
T Consensus       350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~  429 (524)
T PF05787_consen  350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNK  429 (524)
T ss_pred             cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCc
Confidence            45778999998999999842 11                   4999988766       333322211            


Q ss_pred             -CCccccccceEEEeCCCCEEEEEeCCCccccc-------cceeeeeecCCCceEEEEeCCCCcEEEEeCC--CCCCceE
Q 018242          137 -EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR-------NHISVILSGDKTGRLMKYDPATKQVTVLLGN--LSFPNGV  206 (359)
Q Consensus       137 -~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~-------~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p~gi  206 (359)
                       ....+..|..|+++++|+ |||++.+......       .....+...... .+...++.+++++.+...  .....|+
T Consensus       430 ~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~-~~~~~~~~~g~~~rf~~~P~gaE~tG~  507 (524)
T PF05787_consen  430 CDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGN-NVWAYDPDTGELKRFLVGPNGAEITGP  507 (524)
T ss_pred             ccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccc-eeeeccccccceeeeccCCCCcccccc
Confidence             123467899999999999 9999665332110       000000000000 144556777777766533  2345799


Q ss_pred             EEccCCCEEEEE
Q 018242          207 ALSEDGNYILLA  218 (359)
Q Consensus       207 a~~~d~~~l~v~  218 (359)
                      +|+||+++||+.
T Consensus       508 ~fspDg~tlFvn  519 (524)
T PF05787_consen  508 CFSPDGRTLFVN  519 (524)
T ss_pred             eECCCCCEEEEE
Confidence            999999998885

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.42  E-value=0.06  Score=52.90  Aligned_cols=158  Identities=14%  Similarity=0.063  Sum_probs=90.3

Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          100 GLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      .|.+++ ++.|.-+.+...+..+.+...+--....     ...++..+++.|...+.|++                 +..
T Consensus       374 DlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-----HndfVTcVaFnPvDDryFiS-----------------GSL  430 (712)
T KOG0283|consen  374 DLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-----HNDFVTCVAFNPVDDRYFIS-----------------GSL  430 (712)
T ss_pred             eccccc-CCeeEeccccccEEeecCCCcceeeEEe-----cCCeeEEEEecccCCCcEee-----------------ccc
Confidence            344555 5666666666666667776443221111     12467788999865536666                 456


Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-c----C-CCCCCceEE
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q----L-PGFPDNIKR  253 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~----~-~~~p~~i~~  253 (359)
                      ++++-.|+....++.....--.-...+++.|||+. .+.++.++....|+..+.+......+. .    . .....|+.+
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~  509 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF  509 (712)
T ss_pred             ccceEEeecCcCeeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence            77888888775555432222234678999999995 555567777777876554322111111 1    1 123455555


Q ss_pred             CCC--CCEEEEEecCCCccccccccCCc-cceeeecC
Q 018242          254 SPR--GGFWVGIHSRRKGISKLVLSFPW-IGNVLIKL  287 (359)
Q Consensus       254 d~~--G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~  287 (359)
                      .+.  ..+.|++.+++      |.+++- +.+++..+
T Consensus       510 ~p~~~~~vLVTSnDSr------IRI~d~~~~~lv~Kf  540 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSR------IRIYDGRDKDLVHKF  540 (712)
T ss_pred             cCCCCCeEEEecCCCc------eEEEeccchhhhhhh
Confidence            432  15889888776      666653 44555444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.40  E-value=0.059  Score=49.44  Aligned_cols=171  Identities=10%  Similarity=0.059  Sum_probs=78.9

Q ss_pred             EEccCCC-eeEEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           40 AFDALGE-GPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        40 ~~~~~G~-~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ++.+||+ ++|.+..  +..++.+|+.+++.+++.+.                    ......|..+++++..+|.....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg--------------------~g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG--------------------PGDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S--------------------S-B-TTT-EE-TTSSEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC--------------------CCCCccceEEecCCCeEEEEECC
Confidence            4567785 4454443  35899999999877765421                    01112256667767777655445


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCC--Ccccc-ccc--eeeeeecCCCceEEEEeCCCC
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS--SQFQR-RNH--ISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~--~~~~~-~~~--~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ..|.++|+++.+.+.+........  .--..+.+.|+. .+++...  .++.. ..+  ..++.......+|+.+|.++|
T Consensus       102 ~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG  178 (386)
T PF14583_consen  102 RSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG  178 (386)
T ss_dssp             TEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred             CeEEEEECCcCcEEEEEECCcccc--cccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence            679999999988776655322111  111234466777 6655311  11100 001  111222334457999999999


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEE-ec-----CCCEEEEEEcCCC
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLA-ET-----TSCRILRYWLKTS  233 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~-~~-----~~~~i~~~~~~~~  233 (359)
                      +.+.+......-..+.++|..-.++.- -.     -+.+||.++.++.
T Consensus       179 ~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  179 ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             -EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence            988776544433445555422222222 11     1357887776554

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.39  E-value=0.025  Score=50.47  Aligned_cols=203  Identities=14%  Similarity=0.082  Sum_probs=105.7

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      .|..+++..+....-.+=.+.|+|+++.++..++.|..||++++.... +...                    .......
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~~~~~~  238 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EGLELPC  238 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc--------------------ccCcCCc
Confidence            345667777754555566788999999999999999999999974221 1100                    0111223


Q ss_pred             EEEecCCCeEEEE-eCCCcEEEEeCCCCeEEEEeec-CC------CccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242          101 LCFNKTNGDLYIA-DAYFGLLKVGPEGGLATAVATQ-SE------GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS  172 (359)
Q Consensus       101 i~~~~~~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~-~~------~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~  172 (359)
                      +.+.. .+.+.+. +.....+..+..++++...... .+      ......+..+....+=. |..+             
T Consensus       239 ~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~-------------  303 (399)
T KOG0296|consen  239 ISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAAC-------------  303 (399)
T ss_pred             ccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhc-------------
Confidence            44443 3333332 2222233444444444322110 00      00001111111111111 2221             


Q ss_pred             eeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242          173 VILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIK  252 (359)
Q Consensus       173 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  252 (359)
                          +...|+|..||....+++..-..-.....+.+.+ ..+||. ...++.|+.||...++..  -.+.......-.++
T Consensus       304 ----G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t-~c~~g~v~~wDaRtG~l~--~~y~GH~~~Il~f~  375 (399)
T KOG0296|consen  304 ----GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT-ACANGKVRQWDARTGQLK--FTYTGHQMGILDFA  375 (399)
T ss_pred             ----ccccceEEEEecccchhheeccCCCceEEEEEcC-cchhee-eccCceEEeeeccccceE--EEEecCchheeEEE
Confidence                3456789999987666665544333345566666 344444 456789999996543221  11222222234578


Q ss_pred             ECCCCCEEEEEecCC
Q 018242          253 RSPRGGFWVGIHSRR  267 (359)
Q Consensus       253 ~d~~G~lwv~~~~~~  267 (359)
                      +.+++++.++....+
T Consensus       376 ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  376 LSPQKRLVVTVSDDN  390 (399)
T ss_pred             EcCCCcEEEEecCCC
Confidence            889999998887654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.055  Score=46.57  Aligned_cols=157  Identities=11%  Similarity=0.109  Sum_probs=99.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE-E
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY-I  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~-v  112 (359)
                      ..-..+++.|.|++|.+++.+..+..|...+++|+-..                  .++...++..++++++ +|++. .
T Consensus        62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~------------------~lEGHEnEVK~Vaws~-sG~~LAT  122 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVA------------------TLEGHENEVKCVAWSA-SGNYLAT  122 (312)
T ss_pred             heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEe------------------eeeccccceeEEEEcC-CCCEEEE
Confidence            35568899999998888999999999988888777654                  4556667788999999 55544 4


Q ss_pred             EeCCCcEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +...+.+..+..+ +.++....- ..+ ....+-.++++|.-. |.++-+.               ..+-++|+.+++ +
T Consensus       123 CSRDKSVWiWe~deddEfec~aV-L~~-HtqDVK~V~WHPt~d-lL~S~SY---------------DnTIk~~~~~~d-d  183 (312)
T KOG0645|consen  123 CSRDKSVWIWEIDEDDEFECIAV-LQE-HTQDVKHVIWHPTED-LLFSCSY---------------DNTIKVYRDEDD-D  183 (312)
T ss_pred             eeCCCeEEEEEecCCCcEEEEee-ecc-ccccccEEEEcCCcc-eeEEecc---------------CCeEEEEeecCC-C
Confidence            4545555555443 344433221 111 112345688888776 7777332               123356665542 3


Q ss_pred             cEE---EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          192 QVT---VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       192 ~~~---~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      ..+   .+...-.....++|++.|.. +++.+++.++..|.
T Consensus       184 dW~c~~tl~g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  184 DWECVQTLDGHENTVWSLAFDNIGSR-LVSCSDDGTVSIWR  223 (312)
T ss_pred             CeeEEEEecCccceEEEEEecCCCce-EEEecCCcceEeee
Confidence            322   22233335678999998874 56666777777775

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.37  E-value=0.018  Score=53.69  Aligned_cols=236  Identities=16%  Similarity=0.176  Sum_probs=125.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.++.+.+.|..+.+.+.......+|.++-++..+-.-...   +.+-.     .........+.-++.|...+.|++
T Consensus       215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQY---I~Dm~-----nTKGHia~lt~g~whP~~k~~FlT  286 (641)
T KOG0772|consen  215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQY---IRDMY-----NTKGHIAELTCGCWHPDNKEEFLT  286 (641)
T ss_pred             cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchh---hhhhh-----ccCCceeeeeccccccCcccceEE
Confidence            3445788888888677666667778888877655544311100   00000     000111122344577877778887


Q ss_pred             eCCCc-EEEEeCCCC--eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAYFG-LLKVGPEGG--LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~~~-i~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ...++ +..++.+.-  +.+.+.....+..-..+...+++++|+ + |+.                +-..|.|-.|+..+
T Consensus       287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~-iAa----------------gc~DGSIQ~W~~~~  348 (641)
T KOG0772|consen  287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-L-IAA----------------GCLDGSIQIWDKGS  348 (641)
T ss_pred             ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-h-hhh----------------cccCCceeeeecCC
Confidence            66655 555665533  233333332222233566789999999 5 441                22356677777533


Q ss_pred             CcEEEE------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-CCC-CceEECCCCCEEEE
Q 018242          191 KQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFP-DNIKRSPRGGFWVG  262 (359)
Q Consensus       191 ~~~~~~------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p-~~i~~d~~G~lwv~  262 (359)
                      ..+...      +........|+|+.||++ +.+-..++.+..||+...+. ....+..++ .+| .+.+|+|+.+|.++
T Consensus       349 ~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~tdc~FSPd~kli~T  426 (641)
T KOG0772|consen  349 RTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTDCCFSPDDKLILT  426 (641)
T ss_pred             cccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhhcCCCccCCCCccccCCCceEEEe
Confidence            222211      122234578999999985 55556778999999865421 112222332 233 46899999887774


Q ss_pred             EecC-CCccccccccCC-ccceeeecCCccceeeeee
Q 018242          263 IHSR-RKGISKLVLSFP-WIGNVLIKLPIDIVKIHSS  297 (359)
Q Consensus       263 ~~~~-~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~  297 (359)
                      .... .....-.+..|+ .+-+...+++++...+..|
T Consensus       427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~  463 (641)
T KOG0772|consen  427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC  463 (641)
T ss_pred             cccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence            4321 111111133343 3455555555553333333

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.11  Score=46.63  Aligned_cols=208  Identities=12%  Similarity=0.148  Sum_probs=115.4

Q ss_pred             EEeeCCCCCCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEe
Q 018242           27 QYQIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFN  104 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~  104 (359)
                      ++.+.....-.++++-|.+ .-+.++.. ++|..|..+.....    ....+.....+.+    .+....+. ...|...
T Consensus       134 ~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~----~r~~~~~s~~~~q----vl~~pgh~pVtsmqwn  204 (445)
T KOG2139|consen  134 KLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA----NRNIRMMSTHHLQ----VLQDPGHNPVTSMQWN  204 (445)
T ss_pred             eecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc----ccccccccccchh----heeCCCCceeeEEEEc
Confidence            3333334455688888754 34556666 56888875432000    0000001111111    22333333 3577787


Q ss_pred             cCCCeEEEEeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242          105 KTNGDLYIADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR  182 (359)
Q Consensus       105 ~~~g~l~v~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~  182 (359)
                      + +|..|+....+  .|..+|++++...++...    ......-+.++|||.+++.+.                  .+ .
T Consensus       205 ~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----glgg~slLkwSPdgd~lfaAt------------------~d-a  260 (445)
T KOG2139|consen  205 E-DGTILVTASFGSSSIMIWDPDTGQKIPLIPK----GLGGFSLLKWSPDGDVLFAAT------------------CD-A  260 (445)
T ss_pred             C-CCCEEeecccCcceEEEEcCCCCCccccccc----CCCceeeEEEcCCCCEEEEec------------------cc-c
Confidence            8 78888765432  488999999987665421    223455689999999555552                  12 3


Q ss_pred             EEEEeCCCC--cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC--Cc------ceeEeecC--------
Q 018242          183 LMKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK--AG------TIEIVAQL--------  244 (359)
Q Consensus       183 v~~~d~~~~--~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~--~~------~~~~~~~~--------  244 (359)
                      ++++-..++  ..+...-+-....+-+++|+|+.|+++-...-.|+....+...  ..      ......++        
T Consensus       261 vfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag  340 (445)
T KOG2139|consen  261 VFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG  340 (445)
T ss_pred             eeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC
Confidence            444321111  2222111112456778999999999998898899987764321  11      11112222        


Q ss_pred             ----CCCCCceEECCCCCEEEEEecCC
Q 018242          245 ----PGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       245 ----~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                          .+.+..|+.|+.|+..+....+.
T Consensus       341 ~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  341 QRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             cccccCccceeeECCCCCEEEEEEcCC
Confidence                23466799999998777666543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.33  E-value=0.016  Score=56.72  Aligned_cols=183  Identities=11%  Similarity=0.060  Sum_probs=113.8

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -+|.++.++- |..+.++..+..|++...+ +..|                     .+ ....+.++|.|.|.+.|++..
T Consensus       373 LDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F---------------------~H-ndfVTcVaFnPvDDryFiSGS  429 (712)
T KOG0283|consen  373 LDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVF---------------------SH-NDFVTCVAFNPVDDRYFISGS  429 (712)
T ss_pred             eecccccCCe-eEeccccccEEeecCCCcceeeEE---------------------ec-CCeeEEEEecccCCCcEeecc
Confidence            3667777766 8899999999999998653 3333                     22 244789999999999999855


Q ss_pred             CC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          116 YF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       116 ~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      -+ .+..+++...++....+ .    ...+.+++..|||+...|+                  +..|....|+..+.++.
T Consensus       430 LD~KvRiWsI~d~~Vv~W~D-l----~~lITAvcy~PdGk~avIG------------------t~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVDWND-L----RDLITAVCYSPDGKGAVIG------------------TFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             cccceEEeecCcCeeEeehh-h----hhhheeEEeccCCceEEEE------------------EeccEEEEEEccCCeEE
Confidence            44 47778887777654332 1    1357789999999966666                  34566777887765554


Q ss_pred             EEe----CC-----CCCCceEEEccC-CCEEEEEecCCCEEEEEEcCCCCC-cceeEeecCCCCCCceEECCCCCEEEEE
Q 018242          195 VLL----GN-----LSFPNGVALSED-GNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       195 ~~~----~~-----~~~p~gia~~~d-~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~G~lwv~~  263 (359)
                      .-.    ..     .....|+.+.|. ...++|+. .+.+|..||..+..+ .+++.+..... ..-..+..||+..|.+
T Consensus       487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv~KfKG~~n~~S-Q~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLVHKFKGFRNTSS-QISASFSSDGKHIVSA  564 (712)
T ss_pred             EeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhhhhhcccccCCc-ceeeeEccCCCEEEEe
Confidence            321    10     113568877753 23467764 567999999743221 12222222111 1224555678766655


Q ss_pred             ecCC
Q 018242          264 HSRR  267 (359)
Q Consensus       264 ~~~~  267 (359)
                      ....
T Consensus       565 seDs  568 (712)
T KOG0283|consen  565 SEDS  568 (712)
T ss_pred             ecCc
Confidence            5443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.32  E-value=0.021  Score=52.45  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=89.0

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+++-+|+|.+++.++..+.||.|...++....                    .+.........+.|+. ||.++++..+
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------------------v~~aHYQ~ITcL~fs~-dgs~iiTgsk  143 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLN--------------------VLSAHYQSITCLKFSD-DGSHIITGSK  143 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHH--------------------HHHhhccceeEEEEeC-CCcEEEecCC
Confidence            378888999977788788999999999883221                    2222233456788887 7777777656


Q ss_pred             Cc-EEEEeCC------C-CeEEEEeecCCCccccccceEEEeCC---CCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          117 FG-LLKVGPE------G-GLATAVATQSEGIPFRFCNSLDIDQS---TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       117 ~~-i~~~~~~------~-~~~~~~~~~~~~~~~~~~~~l~~d~~---g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +| |..+..-      . ..+.++.. ..+ .-..+.++.++.-   .+ +|-+                  +.+.++-.
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~-f~~-HtlsITDl~ig~Gg~~~r-l~Ta------------------S~D~t~k~  202 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHI-FSD-HTLSITDLQIGSGGTNAR-LYTA------------------SEDRTIKL  202 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceee-ecc-CcceeEEEEecCCCccce-EEEe------------------cCCceEEE
Confidence            55 4444321      1 11111100 000 1113344554432   23 4444                  23345667


Q ss_pred             EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      ||...+.+..-..-...+..+++||-++.+|+.. ..+.|+..++.
T Consensus       203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~  247 (476)
T KOG0646|consen  203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLF  247 (476)
T ss_pred             EEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehh
Confidence            7777665543222234467899999988777765 55789888764

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.32  E-value=0.024  Score=52.50  Aligned_cols=193  Identities=9%  Similarity=0.058  Sum_probs=88.5

Q ss_pred             CCCCCceEEEccCCCeeEEecC------CCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc---CCcceEEE
Q 018242           32 GAIGPESLAFDALGEGPYTGVS------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI---CGRPLGLC  102 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~gi~  102 (359)
                      ++..|+.+-.-|+|++++.+..      .|++..+|.++-++..                    ..+..   ...-..+.
T Consensus       128 g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g--------------------~We~~~~~~~~gYDfw  187 (461)
T PF05694_consen  128 GLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKG--------------------RWEKDRGPQPFGYDFW  187 (461)
T ss_dssp             -EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEE--------------------E--SB-TT------EE
T ss_pred             CCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccc--------------------eeccCCCCCCCCCCeE
Confidence            4668888888899994443322      2688888887643221                    11111   01123455


Q ss_pred             EecCCCeEEEEeC---------------------CCcEEEEeCCCCeEEEEeecCCCccccccceE--EEeCCCCEEEEE
Q 018242          103 FNKTNGDLYIADA---------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSL--DIDQSTGIIYFT  159 (359)
Q Consensus       103 ~~~~~g~l~v~~~---------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~d~~g~~l~v~  159 (359)
                      +.+ ..++.|++.                     ++.|..+|.++++..+..+....  ...|-.|  +-+|+..+=|++
T Consensus       188 ~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~--g~~pLEvRflH~P~~~~gFvg  264 (461)
T PF05694_consen  188 YQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE--GQMPLEVRFLHDPDANYGFVG  264 (461)
T ss_dssp             EET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT--EEEEEEEEE-SSTT--EEEEE
T ss_pred             EcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC--CCceEEEEecCCCCccceEEE
Confidence            667 666666641                     23488899988887655443221  1122223  334555545555


Q ss_pred             eCCCccccccceeeeeecCCCceEEEEeC-CCCcEE-----EEeC---------CC--------CCCceEEEccCCCEEE
Q 018242          160 DSSSQFQRRNHISVILSGDKTGRLMKYDP-ATKQVT-----VLLG---------NL--------SFPNGVALSEDGNYIL  216 (359)
Q Consensus       160 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~~~-----~~~~---------~~--------~~p~gia~~~d~~~l~  216 (359)
                      ..                 ..+.|+++-. +.++..     .+..         .+        .-+..|.++.|.++||
T Consensus       265 ~a-----------------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY  327 (461)
T PF05694_consen  265 CA-----------------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY  327 (461)
T ss_dssp             EE-------------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred             Ee-----------------ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence            22                 2345665544 223221     1110         11        2346888999999999


Q ss_pred             EEecCCCEEEEEEcCCCCCccee--Eeec---------------CCCCCCceEECCCC-CEEEEEe
Q 018242          217 LAETTSCRILRYWLKTSKAGTIE--IVAQ---------------LPGFPDNIKRSPRG-GFWVGIH  264 (359)
Q Consensus       217 v~~~~~~~i~~~~~~~~~~~~~~--~~~~---------------~~~~p~~i~~d~~G-~lwv~~~  264 (359)
                      +++...+.|..||+.++...+..  ++..               +.+.|.-+.++.|| +||+++.
T Consensus       328 vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  328 VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            99999999999999865432211  1111               22346668889999 5999876

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.31  E-value=0.0028  Score=59.89  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=71.4

Q ss_pred             cceEEEEecCCCeEEEEeCCC-----------------cEEEEeCCCC-------eEEEEeecCCC-------------c
Q 018242           97 RPLGLCFNKTNGDLYIADAYF-----------------GLLKVGPEGG-------LATAVATQSEG-------------I  139 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~-----------------~i~~~~~~~~-------~~~~~~~~~~~-------------~  139 (359)
                      +|-.+++.+..+++|++...+                 .|+|+-+.++       ++..+......             .
T Consensus       418 RpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~~  497 (616)
T COG3211         418 RPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINAN  497 (616)
T ss_pred             CccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcccc
Confidence            566889999889999984321                 3899988776       33333321111             0


Q ss_pred             cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC--CCCceEEEccCCCEEEE
Q 018242          140 PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL--SFPNGVALSEDGNYILL  217 (359)
Q Consensus       140 ~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~~p~gia~~~d~~~l~v  217 (359)
                      -+..|.+|++|+.|+ |||.+.++.-...+..      .....+..-++.+++++.+....  ....|.+|+||++++||
T Consensus       498 ~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV  570 (616)
T COG3211         498 WFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV  570 (616)
T ss_pred             cccCCCceEECCCCC-EEEEecCCCCccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence            134589999999999 9999765321100000      00012334455666666655432  34569999999999988


Q ss_pred             Ee
Q 018242          218 AE  219 (359)
Q Consensus       218 ~~  219 (359)
                      .-
T Consensus       571 ~v  572 (616)
T COG3211         571 NV  572 (616)
T ss_pred             Ee
Confidence            64

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=97.30  E-value=0.0081  Score=52.78  Aligned_cols=189  Identities=13%  Similarity=0.077  Sum_probs=96.1

Q ss_pred             cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEE
Q 018242           43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKV  122 (359)
Q Consensus        43 ~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~  122 (359)
                      |+-.++.++..+.-|..||..+++.+.--               +.+.........+.++|++ ||+-.++...+.|..+
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy---------------~~ydh~de~taAhsL~Fs~-DGeqlfaGykrcirvF  184 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASY---------------RAYDHQDEYTAAHSLQFSP-DGEQLFAGYKRCIRVF  184 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccch---------------hhhhhHHhhhhheeEEecC-CCCeEeecccceEEEe
Confidence            55553334555577888888877543210               0001111112356899999 5554444456678888


Q ss_pred             eC-CCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC
Q 018242          123 GP-EGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG  198 (359)
Q Consensus       123 ~~-~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  198 (359)
                      |. ..|..-........   .....+..++++|-....+..-+   |            ...-+|+..+.. +-+.....
T Consensus       185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs---Y------------~q~~giy~~~~~-~pl~llgg  248 (406)
T KOG2919|consen  185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS---Y------------GQRVGIYNDDGR-RPLQLLGG  248 (406)
T ss_pred             eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeec---c------------cceeeeEecCCC-Cceeeecc
Confidence            87 33432222111111   01223344566654331222210   0            111246655532 22333333


Q ss_pred             CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE--CCCCCEEEEE
Q 018242          199 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR--SPRGGFWVGI  263 (359)
Q Consensus       199 ~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~--d~~G~lwv~~  263 (359)
                      ...+...+.+.+||+.||........|..||+...+..-.........-...|.+  |++|++.++.
T Consensus       249 h~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG  315 (406)
T KOG2919|consen  249 HGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG  315 (406)
T ss_pred             cCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc
Confidence            4455678899999999999999999999999864321111100011111223544  5778777754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.29  E-value=0.009  Score=55.44  Aligned_cols=182  Identities=9%  Similarity=0.053  Sum_probs=108.4

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc--eEEEEecCCCeEEEEeC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP--LGLCFNKTNGDLYIADA  115 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~gi~~~~~~g~l~v~~~  115 (359)
                      +..+.+||+.|.++-+-..+-+||+-.-..+                    +..+.....|  ..++++++..-.|.+-.
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTpr--------------------ikaeltssapaCyALa~spDakvcFsccs  529 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPR--------------------IKAELTSSAPACYALAISPDAKVCFSCCS  529 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcc--------------------hhhhcCCcchhhhhhhcCCccceeeeecc
Confidence            4557789999999988889999998653111                    1112222223  35778884444444444


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.|..+|+....+.   ..+.+. -.....|.+++||..||.+                  +.+.+|.+||...++-. 
T Consensus       530 dGnI~vwDLhnq~~V---rqfqGh-tDGascIdis~dGtklWTG------------------GlDntvRcWDlregrql-  586 (705)
T KOG0639|consen  530 DGNIAVWDLHNQTLV---RQFQGH-TDGASCIDISKDGTKLWTG------------------GLDNTVRCWDLREGRQL-  586 (705)
T ss_pred             CCcEEEEEcccceee---ecccCC-CCCceeEEecCCCceeecC------------------CCccceeehhhhhhhhh-
Confidence            445888898765432   112221 1245678899999889987                  45668999998654321 


Q ss_pred             EeCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242          196 LLGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       196 ~~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      ....+ .....+..+|.+.++.|. ..++.+++.....+.  +++. .......=.+.|..-|+.|+.+...
T Consensus       587 qqhdF~SQIfSLg~cP~~dWlavG-Mens~vevlh~skp~--kyql-hlheScVLSlKFa~cGkwfvStGkD  654 (705)
T KOG0639|consen  587 QQHDFSSQIFSLGYCPTGDWLAVG-MENSNVEVLHTSKPE--KYQL-HLHESCVLSLKFAYCGKWFVSTGKD  654 (705)
T ss_pred             hhhhhhhhheecccCCCccceeee-cccCcEEEEecCCcc--ceee-cccccEEEEEEecccCceeeecCch
Confidence            12222 234566677888876665 566778887654331  1111 1111122347788899999987653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=97.28  E-value=0.089  Score=48.43  Aligned_cols=149  Identities=20%  Similarity=0.165  Sum_probs=90.1

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      ++++++||+++.++-.+..|..|+.++.+...                    .+....+...+++|=....+||.+....
T Consensus       207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~--------------------~~~ghr~~V~~L~fr~gt~~lys~s~Dr  266 (479)
T KOG0299|consen  207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK--------------------VFKGHRGAVSSLAFRKGTSELYSASADR  266 (479)
T ss_pred             EEEEcCCCcEEEecCCCceEEEecCcccchhh--------------------cccccccceeeeeeecCccceeeeecCC
Confidence            78999999955566666788899998873221                    2334445567888877678899987766


Q ss_pred             cEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242          118 GLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-  195 (359)
Q Consensus       118 ~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-  195 (359)
                      .+-.++.+.-. ++.+...     ...+.+|.+...++ . ++.-+              ...+..+|++ |+  +.+. 
T Consensus       267 svkvw~~~~~s~vetlyGH-----qd~v~~IdaL~reR-~-vtVGg--------------rDrT~rlwKi-~e--esqli  322 (479)
T KOG0299|consen  267 SVKVWSIDQLSYVETLYGH-----QDGVLGIDALSRER-C-VTVGG--------------RDRTVRLWKI-PE--ESQLI  322 (479)
T ss_pred             ceEEEehhHhHHHHHHhCC-----ccceeeechhcccc-e-EEecc--------------ccceeEEEec-cc--cceee
Confidence            77777765322 1111111     12333444445555 2 22111              1223456666 22  2222 


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      +..+-..+.-++|=.+.  -|++++.++.|..|.+..
T Consensus       323 frg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  323 FRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             eeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence            33444467777776555  489999999999998754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=97.27  E-value=0.046  Score=50.93  Aligned_cols=116  Identities=13%  Similarity=0.139  Sum_probs=75.9

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242           97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ..+.+.+.+++..|.++.....+..+|+..-..+ +...... ......++++++|-+ +-++.-.              
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTpr-ikaelts-sapaCyALa~spDak-vcFsccs--------------  529 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-IKAELTS-SAPACYALAISPDAK-VCFSCCS--------------  529 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcc-hhhhcCC-cchhhhhhhcCCccc-eeeeecc--------------
Confidence            3456667785667777765556778887644322 1111111 113567899999999 7777322              


Q ss_pred             cCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          177 GDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                         .|.|..||.....+. .+.+...+..-|.+++||. .+|++--+++|..||+...
T Consensus       530 ---dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  530 ---DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREG  583 (705)
T ss_pred             ---CCcEEEEEcccceeeecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhh
Confidence               567889998754433 3444455667788999987 5677778899999998654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.24  E-value=0.016  Score=58.46  Aligned_cols=103  Identities=15%  Similarity=0.215  Sum_probs=67.0

Q ss_pred             cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEec
Q 018242          142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAET  220 (359)
Q Consensus       142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~  220 (359)
                      ..+.++.++|++. +.++-                 +....|..|+..+.+.. .+..+...+-|+.|||-|++ +.+.+
T Consensus       130 ~DV~Dv~Wsp~~~-~lvS~-----------------s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqs  190 (942)
T KOG0973|consen  130 SDVLDVNWSPDDS-LLVSV-----------------SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQS  190 (942)
T ss_pred             CccceeccCCCcc-EEEEe-----------------cccceEEEEccccceeeeeeecccccccceEECCccCe-eeeec
Confidence            3567899999998 66662                 34568999998765433 33455567889999999984 67777


Q ss_pred             CCCEEEEEEcCCCCCcceeE----eecCC--CCCCceEECCCCCEEEEEec
Q 018242          221 TSCRILRYWLKTSKAGTIEI----VAQLP--GFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       221 ~~~~i~~~~~~~~~~~~~~~----~~~~~--~~p~~i~~d~~G~lwv~~~~  265 (359)
                      ++..|.+|+..+  .+-.+.    |.+.+  .+...+.++|||...++.+.
T Consensus       191 dDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  191 DDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             CCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            888888887432  111111    22212  23345777889977765443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.22  E-value=0.13  Score=50.28  Aligned_cols=127  Identities=13%  Similarity=0.082  Sum_probs=66.8

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      +|+ +|+++..+.|+.+|..+++...-...... .. ..       ..........++++.  ++++|+++....|+.+|
T Consensus        69 ~g~-vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~-~~-------~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALD  136 (527)
T TIGR03075        69 DGV-MYVTTSYSRVYALDAKTGKELWKYDPKLP-DD-VI-------PVMCCDVVNRGVALY--DGKVFFGTLDARLVALD  136 (527)
T ss_pred             CCE-EEEECCCCcEEEEECCCCceeeEecCCCC-cc-cc-------cccccccccccceEE--CCEEEEEcCCCEEEEEE
Confidence            455 88888888999999998754332111000 00 00       000000012345554  67899988777799999


Q ss_pred             CCCCeEEEEeecCCCc-cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          124 PEGGLATAVATQSEGI-PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~-~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      .++|+..--....... .......-++ .+++ +|++..+..+            ...|.|+.+|.++|+....
T Consensus       137 a~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~-Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       137 AKTGKVVWSKKNGDYKAGYTITAAPLV-VKGK-VITGISGGEF------------GVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             CCCCCEEeecccccccccccccCCcEE-ECCE-EEEeeccccc------------CCCcEEEEEECCCCceeEe
Confidence            9999864321111000 0000011112 1455 8887543221            1246788888888876653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=97.20  E-value=0.12  Score=44.49  Aligned_cols=195  Identities=13%  Similarity=0.070  Sum_probs=114.0

Q ss_pred             eCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEecC
Q 018242           30 IEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFNKT  106 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~  106 (359)
                      .+....-+.+++.|- |++++.+..+..|..|+.. ...+.-..                  .+.. .....+.++++| 
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------------vld~~hkrsVRsvAwsp-   71 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------------VLDDGHKRSVRSVAWSP-   71 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------------eccccchheeeeeeecC-
Confidence            333345778999997 8878888888999999987 34343321                  1111 123467899999 


Q ss_pred             CCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      .|++.++...+. +..+.-..++++.+.. ..+ +.+.+-.++++++|+ +..+-+                 +.-.|+.
T Consensus        72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~-lEG-HEnEVK~Vaws~sG~-~LATCS-----------------RDKSVWi  131 (312)
T KOG0645|consen   72 HGRYLASASFDATVVIWKKEDGEFECVAT-LEG-HENEVKCVAWSASGN-YLATCS-----------------RDKSVWI  131 (312)
T ss_pred             CCcEEEEeeccceEEEeecCCCceeEEee-eec-cccceeEEEEcCCCC-EEEEee-----------------CCCeEEE
Confidence            666555444443 4555555666655432 222 224566799999999 444422                 2224554


Q ss_pred             EeCC-CCcEEEE---eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC---CCCCceEECCCCC
Q 018242          186 YDPA-TKQVTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGG  258 (359)
Q Consensus       186 ~d~~-~~~~~~~---~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~  258 (359)
                      +..+ +.+++..   ..+..-.-.+.+.|... |+++.+.+++|..|.-.++  ..-+....+.   +-...++||+.|.
T Consensus       132 We~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~  208 (312)
T KOG0645|consen  132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGS  208 (312)
T ss_pred             EEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCc
Confidence            4433 3455532   23344456788888554 8888899999999875422  1222222222   2235578888885


Q ss_pred             EEEEEecC
Q 018242          259 FWVGIHSR  266 (359)
Q Consensus       259 lwv~~~~~  266 (359)
                      -.+++...
T Consensus       209 rl~s~sdD  216 (312)
T KOG0645|consen  209 RLVSCSDD  216 (312)
T ss_pred             eEEEecCC
Confidence            55544443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=97.19  E-value=0.03  Score=50.76  Aligned_cols=203  Identities=15%  Similarity=0.154  Sum_probs=111.1

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...-..+.+|++++...++++++.+..||.+..+...                    .+.........+-+...... .|
T Consensus       219 ~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------------------TLsGHtdkVt~ak~~~~~~~-vV  277 (459)
T KOG0288|consen  219 LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------------------TLSGHTDKVTAAKFKLSHSR-VV  277 (459)
T ss_pred             CCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--------------------hhcccccceeeehhhccccc-ee
Confidence            3455689999999977788888999999987653211                    11111122222222221111 33


Q ss_pred             EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ....+ .|-.+|+....-.  ...   .+....++|+..  +. .+++                 +....+|-.||..+.
T Consensus       278 sgs~DRtiK~WDl~k~~C~--kt~---l~~S~cnDI~~~--~~-~~~S-----------------gH~DkkvRfwD~Rs~  332 (459)
T KOG0288|consen  278 SGSADRTIKLWDLQKAYCS--KTV---LPGSQCNDIVCS--IS-DVIS-----------------GHFDKKVRFWDIRSA  332 (459)
T ss_pred             eccccchhhhhhhhhhhee--ccc---cccccccceEec--ce-eeee-----------------cccccceEEEeccCC
Confidence            22222 2333444332211  011   133466777765  22 4444                 234567888986555


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC-----CCceEECCCCCEEEEEecC
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF-----PDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~lwv~~~~~  266 (359)
                      ......+.......+.+++++..+..+ +.++.+-++|+.....  ...+.. +++     -..+.++|+|.+..+...+
T Consensus       333 ~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~sA-~g~k~asDwtrvvfSpd~~YvaAGS~d  408 (459)
T KOG0288|consen  333 DKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFSA-EGFKCASDWTRVVFSPDGSYVAAGSAD  408 (459)
T ss_pred             ceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccE--EEEeec-cccccccccceeEECCCCceeeeccCC
Confidence            444333333356778888888876666 6777899998754322  122221 111     2337889988766666555


Q ss_pred             CCccccccccCC-ccceeeecCCcc
Q 018242          267 RKGISKLVLSFP-WIGNVLIKLPID  290 (359)
Q Consensus       267 ~~~~~~~~~~~~-~~g~~~~~~~~~  290 (359)
                      +.     ++++. .+||+.+.+..+
T Consensus       409 gs-----v~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  409 GS-----VYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             Cc-----EEEEEccCceEEEEeccC
Confidence            54     66655 367777666554

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.16  E-value=0.025  Score=56.24  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=95.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ...++++.+|..+.++..+-.|-.++.++..-..                    .+........++.++| ++++.+...
T Consensus        99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~--------------------~lrgh~apVl~l~~~p-~~~fLAvss  157 (933)
T KOG1274|consen   99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK--------------------VLRGHDAPVLQLSYDP-KGNFLAVSS  157 (933)
T ss_pred             ceEEEEecCCcEEEeecCceeEEEEeccccchhe--------------------eecccCCceeeeeEcC-CCCEEEEEe
Confidence            3478899999966677777778888776642111                    2223334457899999 666665544


Q ss_pred             CC-cEEEEeCCCCeEEEEeecCC-C--cc-ccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          116 YF-GLLKVGPEGGLATAVATQSE-G--IP-FRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       116 ~~-~i~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      -+ .+..++..++......+... .  .. ..-...+++.|+|.++.+.                  ...+.|..|++.+
T Consensus       158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~------------------~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP------------------PVDNTVKVYSRKG  219 (933)
T ss_pred             cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee------------------ccCCeEEEEccCC
Confidence            44 48888988776543222111 1  11 2234568999996634443                  2245788888876


Q ss_pred             CcEEEEe-CCC--CCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          191 KQVTVLL-GNL--SFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       191 ~~~~~~~-~~~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      .+..... ...  ..-.-++|+|.|++ +.+.+.++.|.+||.+
T Consensus       220 we~~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  220 WELQFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVD  262 (933)
T ss_pred             ceeheeecccccccceEEEEEcCCCcE-EeeeccCCcEEEEecc
Confidence            5443222 221  12457889999975 4555667899999976

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.026  Score=46.77  Aligned_cols=111  Identities=21%  Similarity=0.273  Sum_probs=67.2

Q ss_pred             CCcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242           95 CGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus        95 ~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      .++-.|++.|  +.+||+++...-++.-||++-... .+.-...+.|....|.+-+- ||. +|.-...           
T Consensus       130 ~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~-----------  194 (262)
T COG3823         130 EGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQ-----------  194 (262)
T ss_pred             CCcceeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeee-----------
Confidence            3455677766  667998876656888888753211 11112344555666666432 454 5554322           


Q ss_pred             eeecCCCceEEEEeCCCCcEEEEeC-------------CCCCCceEEEccCCCEEEEEecCCCEEE
Q 018242          174 ILSGDKTGRLMKYDPATKQVTVLLG-------------NLSFPNGVALSEDGNYILLAETTSCRIL  226 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~~~~~-------------~~~~p~gia~~~d~~~l~v~~~~~~~i~  226 (359)
                            +-.|.+++|++|++.....             ....+||||+++++..+|++...=..++
T Consensus       195 ------t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lf  254 (262)
T COG3823         195 ------TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLF  254 (262)
T ss_pred             ------ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeE
Confidence                  1269999999988764321             1234689999999888999864433333

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.13  E-value=0.039  Score=50.73  Aligned_cols=139  Identities=17%  Similarity=0.233  Sum_probs=69.2

Q ss_pred             EEEEeCCCCeEEEEeecCC--CccccccceEEE--eC-CCCEEEEEeCCCccccccceeeeeecCCCce--EEEEe-CCC
Q 018242          119 LLKVGPEGGLATAVATQSE--GIPFRFCNSLDI--DQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGR--LMKYD-PAT  190 (359)
Q Consensus       119 i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~--d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~--v~~~d-~~~  190 (359)
                      ++++++.++.++.+.....  ......+.+++.  ++ +|. +|+-...                ..|.  .|++. ...
T Consensus       131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~-~ya~v~~----------------k~G~~~Qy~L~~~~~  193 (381)
T PF02333_consen  131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA-LYAFVNG----------------KDGRVEQYELTDDGD  193 (381)
T ss_dssp             EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT---EEEEEEE----------------TTSEEEEEEEEE-TT
T ss_pred             EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCc-EEEEEec----------------CCceEEEEEEEeCCC
Confidence            7778888787765532111  012234667764  43 466 5554221                1222  22332 222


Q ss_pred             CcEE----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCC---CCceEE--CCC--C
Q 018242          191 KQVT----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGF---PDNIKR--SPR--G  257 (359)
Q Consensus       191 ~~~~----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~---p~~i~~--d~~--G  257 (359)
                      +.+.    +-......++|++.+.....||+++.. .+||+|+.++......+.+..  -..+   ..||++  ..+  |
T Consensus       194 g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g  272 (381)
T PF02333_consen  194 GKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG  272 (381)
T ss_dssp             SSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E
T ss_pred             CcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe
Confidence            3221    112234578999999888889999855 699999987654333333322  1112   345555  333  4


Q ss_pred             CEEEEEecCCCccccccccCCcc
Q 018242          258 GFWVGIHSRRKGISKLVLSFPWI  280 (359)
Q Consensus       258 ~lwv~~~~~~~~~~~~~~~~~~~  280 (359)
                      .|.+++.+.+.     ..+|++.
T Consensus       273 YLivSsQG~~s-----f~Vy~r~  290 (381)
T PF02333_consen  273 YLIVSSQGDNS-----FAVYDRE  290 (381)
T ss_dssp             EEEEEEGGGTE-----EEEEESS
T ss_pred             EEEEEcCCCCe-----EEEEecC
Confidence            56666666553     4555544

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=97.11  E-value=0.023  Score=52.82  Aligned_cols=191  Identities=12%  Similarity=0.083  Sum_probs=104.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ..+|++..+.-..+..+..++-+-.||......+.+                    +........++.+...|-.|.-..
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~--------------------lkdh~stvt~v~YN~~DeyiAsvs  140 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF--------------------LKDHQSTVTYVDYNNTDEYIASVS  140 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh--------------------ccCCcceeEEEEecCCcceeEEec
Confidence            344555554444222333346777899875322222                    122234466777776333333333


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..-...++....-.....+   ..+.-+..++-.+++..+.                 +..|.|..||..+..-.
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sg---qsvRll~ys~skr~lL~~a-----------------sd~G~VtlwDv~g~sp~  200 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSG---QSVRLLRYSPSKRFLLSIA-----------------SDKGAVTLWDVQGMSPI  200 (673)
T ss_pred             cCCcEEEEecccCccccceecCCC---CeEEEeecccccceeeEee-----------------ccCCeEEEEeccCCCcc
Confidence            334477766666543221111111   1233456666666444441                 23578889998743322


Q ss_pred             EE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          195 VL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       195 ~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .-  ..+-....||+|+|.+..|+++--.+.+|+.||.......+.-.+..   -...+++.++|.+.++....+.
T Consensus       201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCce
Confidence            11  12223357999999888899998889999999976443333222222   1245888889977766555554

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.07  E-value=0.011  Score=57.20  Aligned_cols=121  Identities=15%  Similarity=0.249  Sum_probs=67.2

Q ss_pred             CCCCCceEEEccCCCeeEEe-cCC-------------------CEEEEEEcCCc-------ceEEEeecCCCCCCCCCCc
Q 018242           32 GAIGPESLAFDALGEGPYTG-VSD-------------------GRIIKWHQDQR-------RWLHFARTSPNRDGCEGAY   84 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~-~~~-------------------~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~   84 (359)
                      ++..||+|.+++....+|++ +++                   |.|++|++.++       .|..+..............
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            58899999999863336654 332                   48999998765       4444433211000000000


Q ss_pred             ccccccccccCCcceEEEEecCCCeEEEEeCCCc-------------EEE-----------EeCCCCeEEEEeecCCCcc
Q 018242           85 EYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-------------LLK-----------VGPEGGLATAVATQSEGIP  140 (359)
Q Consensus        85 ~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-------------i~~-----------~~~~~~~~~~~~~~~~~~~  140 (359)
                      +   .........|..|+|++ +|+|||+.....             ++.           .++.+++++++....   .
T Consensus       428 ~---~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P---~  500 (524)
T PF05787_consen  428 N---KCDDNGFASPDNLAFDP-DGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGP---N  500 (524)
T ss_pred             C---cccCCCcCCCCceEECC-CCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCC---C
Confidence            0   01122335688999999 899999954321             111           123334444433211   2


Q ss_pred             ccccceEEEeCCCCEEEEE
Q 018242          141 FRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus       141 ~~~~~~l~~d~~g~~l~v~  159 (359)
                      ...+.+++++|||++||+.
T Consensus       501 gaE~tG~~fspDg~tlFvn  519 (524)
T PF05787_consen  501 GAEITGPCFSPDGRTLFVN  519 (524)
T ss_pred             CcccccceECCCCCEEEEE
Confidence            2345678899999977776

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.07  E-value=0.19  Score=44.35  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=24.5

Q ss_pred             CCCCCCceEEEccCCCeeEEecC-CCEEEEEEcC
Q 018242           31 EGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQD   63 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~   63 (359)
                      +.+..|++|++.|.|. +|++.. .+....||.+
T Consensus        20 p~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGN   52 (336)
T ss_pred             ccccccceeEecCCCC-EEEecCCcceEEeecCC
Confidence            4688999999999998 776654 4666677765

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=97.06  E-value=0.012  Score=51.37  Aligned_cols=161  Identities=11%  Similarity=0.070  Sum_probs=100.8

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.++.|.|...+|..+..++.|-.+|......+.                  ..+.-........|.|.|.+.-|.++
T Consensus       173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr------------------A~K~~qd~~~vrsiSfHPsGefllvg  234 (430)
T KOG0640|consen  173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR------------------AFKVFQDTEPVRSISFHPSGEFLLVG  234 (430)
T ss_pred             CcccceeecchhheEEeccCCCeEEEEecccHHHHH------------------HHHHhhccceeeeEeecCCCceEEEe
Confidence            345588899998888888888988888864321110                  00111111235688999955556666


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      +...-+..||.++-+-  +....+ .+....++.+..++.|+ ||++-                 +..|.|-.||.-+++
T Consensus       235 TdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~-lYvTa-----------------SkDG~IklwDGVS~r  294 (430)
T KOG0640|consen  235 TDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGS-LYVTA-----------------SKDGAIKLWDGVSNR  294 (430)
T ss_pred             cCCCceeEEeccceeE--eeecCcccccccceeEEEecCCcc-EEEEe-----------------ccCCcEEeeccccHH
Confidence            6555677788887653  333222 22334678888999999 99993                 457888889876655


Q ss_pred             EEEE---eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          193 VTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       193 ~~~~---~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ....   .++....-...|++++++++-++ .+..+..|.+..+
T Consensus       295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkLWEi~t~  337 (430)
T KOG0640|consen  295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDSTVKLWEISTG  337 (430)
T ss_pred             HHHHHHhhcCCceeeeEEEccCCeEEeecC-CcceeeeeeecCC
Confidence            4322   13344455667888998655444 3456777776543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=97.05  E-value=0.01  Score=53.68  Aligned_cols=179  Identities=15%  Similarity=0.168  Sum_probs=108.0

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      .+.+.|+|++|.+++..|....||..+=.|+++                    .........++.++. ++...|+...+
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti--------------------lQaHDs~Vr~m~ws~-~g~wmiSgD~g  159 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI--------------------LQAHDSPVRTMKWSH-NGTWMISGDKG  159 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHH--------------------hhhhcccceeEEEcc-CCCEEEEcCCC
Confidence            678999999999999999999998744222221                    112223356888888 67766665555


Q ss_pred             cEEE-EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-EEE
Q 018242          118 GLLK-VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-VTV  195 (359)
Q Consensus       118 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~  195 (359)
                      |.++ +++.-..++.+.    ......+.+++++|+.. .|++-+.                 .+.|..+|..-.+ ...
T Consensus       160 G~iKyWqpnmnnVk~~~----ahh~eaIRdlafSpnDs-kF~t~Sd-----------------Dg~ikiWdf~~~kee~v  217 (464)
T KOG0284|consen  160 GMIKYWQPNMNNVKIIQ----AHHAEAIRDLAFSPNDS-KFLTCSD-----------------DGTIKIWDFRMPKEERV  217 (464)
T ss_pred             ceEEecccchhhhHHhh----HhhhhhhheeccCCCCc-eeEEecC-----------------CCeEEEEeccCCchhhe
Confidence            6554 455433332211    11224678899999888 7887432                 4566666653222 223


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---CCCceEECCCCCEEEEEec
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~lwv~~~~  265 (359)
                      +..+..-+..+.+.|... |+++.+.++.|..||.....     .+..+.+   ..-++.+.++|++..+...
T Consensus       218 L~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~-----cl~tlh~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  218 LRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS-----CLATLHGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             eccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc-----hhhhhhhccceEEEEEEcCCCCeeEEccC
Confidence            345556678888888654 78888888888888854331     1111111   1234666777765554443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.05  E-value=0.0012  Score=36.25  Aligned_cols=27  Identities=37%  Similarity=0.802  Sum_probs=23.7

Q ss_pred             CCCceEEEccCCCEEEEEecCCCEEEEE
Q 018242          201 SFPNGVALSEDGNYILLAETTSCRILRY  228 (359)
Q Consensus       201 ~~p~gia~~~d~~~l~v~~~~~~~i~~~  228 (359)
                      ..|.|++++++|+ +||+++.+++|.+|
T Consensus         2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            4689999997775 99999999999876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.04  E-value=0.18  Score=43.44  Aligned_cols=108  Identities=13%  Similarity=0.082  Sum_probs=63.2

Q ss_pred             CCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242           45 GEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        45 G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      |+.++++...+++|.++-++++ ...|..                  .....-   .-..|.+.|-+|.+...+..+.+|
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~------------------~~~vk~---~a~~d~~~glIycgshd~~~yalD  121 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI------------------LETVKV---RAQCDFDGGLIYCGSHDGNFYALD  121 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeee------------------hhhhcc---ceEEcCCCceEEEecCCCcEEEec
Confidence            4456677788888888888773 222211                  111111   122455578889888777789999


Q ss_pred             CCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          124 PEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +++..-. +.....+.-+..   =++++ ++. ||++.                  ..|.|...++++.....+
T Consensus       122 ~~~~~cV-ykskcgG~~f~s---P~i~~g~~s-ly~a~------------------t~G~vlavt~~~~~~~~~  172 (354)
T KOG4649|consen  122 PKTYGCV-YKSKCGGGTFVS---PVIAPGDGS-LYAAI------------------TAGAVLAVTKNPYSSTEF  172 (354)
T ss_pred             ccccceE-EecccCCceecc---ceecCCCce-EEEEe------------------ccceEEEEccCCCCccee
Confidence            8865432 222223222222   25666 676 99993                  356788888876644433

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=97.03  E-value=0.13  Score=45.08  Aligned_cols=150  Identities=14%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .+-..+.+++.+..|.++..+|.+..|+....+.+.                    .+. ........+|.+ +.++|++
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------------------~~~-~~~plL~c~F~d-~~~~~~G   71 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------------------KFK-HGAPLLDCAFAD-ESTIVTG   71 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------------------hee-cCCceeeeeccC-CceEEEe
Confidence            344678888877668899999999999987653221                    111 112235667776 8899999


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      +..+.|.++|..++....+....     ..+..|...+.-+ ..|+                 +++...|-.||+...  
T Consensus        72 ~~dg~vr~~Dln~~~~~~igth~-----~~i~ci~~~~~~~-~vIs-----------------gsWD~~ik~wD~R~~--  126 (323)
T KOG1036|consen   72 GLDGQVRRYDLNTGNEDQIGTHD-----EGIRCIEYSYEVG-CVIS-----------------GSWDKTIKFWDPRNK--  126 (323)
T ss_pred             ccCceEEEEEecCCcceeeccCC-----CceEEEEeeccCC-eEEE-----------------cccCccEEEEecccc--
Confidence            87778999999998765543311     1222333333333 4455                 356678999998641  


Q ss_pred             EEEeCCCCCCc-eEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          194 TVLLGNLSFPN-GVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       194 ~~~~~~~~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                       ........+. -.+++-.++.|+|.. .+.++..||+..
T Consensus       127 -~~~~~~d~~kkVy~~~v~g~~LvVg~-~~r~v~iyDLRn  164 (323)
T KOG1036|consen  127 -VVVGTFDQGKKVYCMDVSGNRLVVGT-SDRKVLIYDLRN  164 (323)
T ss_pred             -ccccccccCceEEEEeccCCEEEEee-cCceEEEEEccc
Confidence             1122222222 335566666666654 556899999853

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.28  Score=46.65  Aligned_cols=189  Identities=11%  Similarity=0.006  Sum_probs=107.8

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      -....++.++++|..|.+++.+|.+..||....+-..                    .+.. .+..+--++.- ++.++.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~--------------------~~~~-~h~~rvg~laW-~~~~ls  274 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR--------------------TLRG-SHASRVGSLAW-NSSVLS  274 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc--------------------cccC-CcCceeEEEec-cCceEE
Confidence            5788899999999989999999999999987542110                    1111 02222223333 345555


Q ss_pred             EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +.... .|..+|....+.  ......+ .-..+.++.+.+|++ ...+                 ++.++.+..+|..+.
T Consensus       275 sGsr~~~I~~~dvR~~~~--~~~~~~~-H~qeVCgLkws~d~~-~lAS-----------------GgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQH--VVSTLQG-HRQEVCGLKWSPDGN-QLAS-----------------GGNDNVVFIWDGLSP  333 (484)
T ss_pred             EecCCCcEEEEEEecchh--hhhhhhc-ccceeeeeEECCCCC-eecc-----------------CCCccceEeccCCCc
Confidence            43333 477766654331  1110111 113567899999998 3333                 234567888887432


Q ss_pred             c-EEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          192 Q-VTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       192 ~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      . ...+.........++++|-...|+.++..  +.+|.-|+....   ....-..-.....++.+.+..+=.+++.+..
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s  409 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVDTGSQVCSLIWSKKYKELLSTHGYS  409 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccccCCceeeEEEcCCCCEEEEecCCC
Confidence            2 22344555667789999865556665443  356666765432   1111111233456788888876666666543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.33  Score=45.99  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             EEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          101 LCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ..++|++..|.++...+   .|+.+|..++..+.+ ....+  ...  .=.++|||++|+++...               
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~g--i~~--~Ps~spdG~~ivf~Sdr---------------  302 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-TNGFG--INT--SPSWSPDGSKIVFTSDR---------------  302 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec-ccCCc--ccc--CccCCCCCCEEEEEeCC---------------
Confidence            34777556666664443   499999988875443 21111  111  22678999977777332               


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCE--EEEEEc
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR--ILRYWL  230 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~--i~~~~~  230 (359)
                      ...-.|++++++++..+.+........--.++|||+.+.+.....+.  |..+++
T Consensus       303 ~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         303 GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            12236999999988776654443333345678999976665543344  444444

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.01  E-value=0.17  Score=46.64  Aligned_cols=141  Identities=23%  Similarity=0.320  Sum_probs=74.3

Q ss_pred             CCeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEe----CCCCEE---EEEeCCCccccccceeeeeecC
Q 018242          107 NGDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID----QSTGII---YFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       107 ~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d----~~g~~l---~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      ...++++ +...||+.||+++++++.+..       ..+|.+.+-    -+|+.+   .+++...             +.
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-------Gr~NNVDvrygf~l~g~~vDlavas~R~~-------------g~  126 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV-------GRPNNVDVRYGFPLNGKTVDLAVASDRSD-------------GR  126 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE-S-------S-EEEEEEEEEEEETTEEEEEEEEEE-CC-------------CT
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEeecC-------CCcceeeeecceecCCceEEEEEEecCcC-------------CC
Confidence            3445555 555689999999888765521       122332211    133321   2222110             01


Q ss_pred             CCceEEEEeCCCCcEEEEe-------CCCCCCceEEEcc---CCCEEEEEecCCCEEEEEEcCCCCCcc--eeEeec--C
Q 018242          179 KTGRLMKYDPATKQVTVLL-------GNLSFPNGVALSE---DGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQ--L  244 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~-------~~~~~p~gia~~~---d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~--~  244 (359)
                      ..-++|.+|+.++.+..+.       .....|.|+|+..   +|+...+....++.+..|.+.....+.  .+.+.+  +
T Consensus       127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~  206 (381)
T PF02333_consen  127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV  206 (381)
T ss_dssp             -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred             CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence            1236999998877776542       2234578999964   355333334456789998886332222  122222  4


Q ss_pred             CCCCCceEECC-CCCEEEEEecCC
Q 018242          245 PGFPDNIKRSP-RGGFWVGIHSRR  267 (359)
Q Consensus       245 ~~~p~~i~~d~-~G~lwv~~~~~~  267 (359)
                      ++.+.++++|. .|.||++....+
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~~G  230 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEEDVG  230 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETTTE
T ss_pred             CCcceEEEEecccCCEEEecCccE
Confidence            55688999976 578999987754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.00  E-value=0.12  Score=47.18  Aligned_cols=130  Identities=19%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             ceEEEEecCCCeEEEEeCCC-------cEEEEeCCCCeEEEEe-e-cC-------C-CccccccceEEEeCCCCEEEEEe
Q 018242           98 PLGLCFNKTNGDLYIADAYF-------GLLKVGPEGGLATAVA-T-QS-------E-GIPFRFCNSLDIDQSTGIIYFTD  160 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~-------~i~~~~~~~~~~~~~~-~-~~-------~-~~~~~~~~~l~~d~~g~~l~v~d  160 (359)
                      +-+|++.+ ++.+||++.+.       .|++++.++...+.+. . ..       . ......+.+|++.++|++||++.
T Consensus        87 ~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            44899955 99999997644       5999998844333331 1 11       1 12345678899999999888884


Q ss_pred             CCCccccccceeeeeecCCCceEEEEeCCCCc--EEEE---eC------CCCCCceEEEccCCCEEEEEecC-------C
Q 018242          161 SSSQFQRRNHISVILSGDKTGRLMKYDPATKQ--VTVL---LG------NLSFPNGVALSEDGNYILLAETT-------S  222 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~---~~------~~~~p~gia~~~d~~~l~v~~~~-------~  222 (359)
                      -+.-..... .... .....-.++.+|+.+..  ...+   ..      ....+..++.-++++ +++.+..       .
T Consensus       166 E~~l~~d~~-~~~~-~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~  242 (326)
T PF13449_consen  166 ESPLKQDGP-RANP-DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNY  242 (326)
T ss_pred             CccccCCCc-cccc-ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccce
Confidence            332110000 0000 00112468889887521  2221   11      233455666667776 7887776       2


Q ss_pred             CEEEEEEcC
Q 018242          223 CRILRYWLK  231 (359)
Q Consensus       223 ~~i~~~~~~  231 (359)
                      .+|+++++.
T Consensus       243 ~ri~~v~l~  251 (326)
T PF13449_consen  243 KRIYRVDLS  251 (326)
T ss_pred             EEEEEEEcc
Confidence            355666553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.00  E-value=0.4  Score=46.92  Aligned_cols=217  Identities=14%  Similarity=0.104  Sum_probs=119.4

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE-ecCCCeEEEEeCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF-NKTNGDLYIADAY  116 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-~~~~g~l~v~~~~  116 (359)
                      .+.....++ +..-+.+..+..||.++.+...                    .+.....+...|.+ .+++..|.|++..
T Consensus       287 ~~~~~~~~~-~l~vtaeQnl~l~d~~~l~i~k--------------------~ivG~ndEI~Dm~~lG~e~~~laVATNs  345 (775)
T KOG0319|consen  287 LLAIESMSQ-LLLVTAEQNLFLYDEDELTIVK--------------------QIVGYNDEILDMKFLGPEESHLAVATNS  345 (775)
T ss_pred             ceeccccCc-eEEEEccceEEEEEccccEEeh--------------------hhcCCchhheeeeecCCccceEEEEeCC
Confidence            444445566 5554555678888776642211                    22333334455554 3557889998766


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      ..+..|+..+-.-..+...     ...+..+.+..+|- +.++-+.               .....+|+++.+..+...+
T Consensus       346 ~~lr~y~~~~~~c~ii~GH-----~e~vlSL~~~~~g~-llat~sK---------------D~svilWr~~~~~~~~~~~  404 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQIIPGH-----TEAVLSLDVWSSGD-LLATGSK---------------DKSVILWRLNNNCSKSLCV  404 (775)
T ss_pred             CceEEEecCCCceEEEeCc-----hhheeeeeecccCc-EEEEecC---------------CceEEEEEecCCcchhhhh
Confidence            6677777766554433221     12445566556674 4444221               2234577775443332222


Q ss_pred             e---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-------CCCCCCceEECCCCCEEEEEecC
Q 018242          197 L---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-------LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       197 ~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      .   .+....-+++++..+.-.+++.+.+.++..|++...+.+.......       ...-.+++++.++..|..+....
T Consensus       405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD  484 (775)
T KOG0319|consen  405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD  484 (775)
T ss_pred             hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence            1   2233456788877777789999999999999986532222221111       11236779999888888766554


Q ss_pred             CCccccccccCCccceeeecCCccceeeeeeccc
Q 018242          267 RKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVK  300 (359)
Q Consensus       267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  300 (359)
                      ..   ..+..++ +..++..+..+-..+-++-|+
T Consensus       485 kt---aKiW~le-~~~l~~vLsGH~RGvw~V~Fs  514 (775)
T KOG0319|consen  485 KT---AKIWDLE-QLRLLGVLSGHTRGVWCVSFS  514 (775)
T ss_pred             cc---eeeeccc-CceEEEEeeCCccceEEEEec
Confidence            42   0122223 666666665554444443333

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.00  E-value=0.049  Score=48.29  Aligned_cols=142  Identities=15%  Similarity=0.207  Sum_probs=82.3

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC--C--cceEEEEecCCC
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC--G--RPLGLCFNKTNG  108 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~p~gi~~~~~~g  108 (359)
                      --..+.|++ .++.++++.+.-.=+..+++.-. |...=+|+               .+....  .  -.+|+++.. +.
T Consensus       102 didiHdia~-~~~~l~fVNT~fSCLatl~~~~S-F~P~WkPp---------------FIs~la~eDRCHLNGlA~~~-g~  163 (335)
T TIGR03032       102 DIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYS-FVPLWKPP---------------FISKLAPEDRCHLNGMALDD-GE  163 (335)
T ss_pred             Ccchhheee-cCCcEEEEECcceeEEEECCCCc-cccccCCc---------------cccccCccCceeecceeeeC-Ce
Confidence            346678888 56665777777666777766532 22110000               111110  1  134777764 44


Q ss_pred             eEEEEeC-------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          109 DLYIADA-------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       109 ~l~v~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      --||+.-             .+|=+.+|..++++  +..     ....|++-.+. +|+ ||+.|++             
T Consensus       164 p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev--l~~-----GLsmPhSPRWh-dgr-Lwvldsg-------------  221 (335)
T TIGR03032       164 PRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV--VAS-----GLSMPHSPRWY-QGK-LWLLNSG-------------  221 (335)
T ss_pred             EEEEEEeeccCCcccccccccCCeEEEEeCCCCE--EEc-----CccCCcCCcEe-CCe-EEEEECC-------------
Confidence            4555421             11223355555543  222     22345554553 577 9999876             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEec
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET  220 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~  220 (359)
                          .|.|.++|+++|+.+.+..-...|.|++|.  |+.++|+.+
T Consensus       222 ----tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       222 ----RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             ----CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence                578999999988888876555678999997  777777654

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.98  E-value=0.11  Score=47.99  Aligned_cols=165  Identities=18%  Similarity=0.198  Sum_probs=94.7

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec--CCCeE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK--TNGDL  110 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~--~~g~l  110 (359)
                      ++.-.++.|..||..++++..+|.|..|...+- +.   ..+.+     .|.  +...+....-....+.++.  .+.++
T Consensus       123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l-v~---a~~~~-----~~~--p~~~f~~HtlsITDl~ig~Gg~~~rl  191 (476)
T KOG0646|consen  123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL-VS---ADNDH-----SVK--PLHIFSDHTLSITDLQIGSGGTNARL  191 (476)
T ss_pred             ccceeEEEEeCCCcEEEecCCCccEEEEEEEee-cc---cccCC-----Ccc--ceeeeccCcceeEEEEecCCCccceE
Confidence            556679999999998888999999999976431 10   00000     000  0001111111122333332  25667


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          111 YIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      |.+...+.+..+|...+.+-.-.. .+    ..++.+++||-++++|++..                  .|+|+..+...
T Consensus       192 ~TaS~D~t~k~wdlS~g~LLlti~-fp----~si~av~lDpae~~~yiGt~------------------~G~I~~~~~~~  248 (476)
T KOG0646|consen  192 YTASEDRTIKLWDLSLGVLLLTIT-FP----SSIKAVALDPAERVVYIGTE------------------EGKIFQNLLFK  248 (476)
T ss_pred             EEecCCceEEEEEeccceeeEEEe-cC----CcceeEEEcccccEEEecCC------------------cceEEeeehhc
Confidence            776655567778888776422111 11    35778999999998999843                  34444433211


Q ss_pred             -----------------CcEEEEeCCC--CCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          191 -----------------KQVTVLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       191 -----------------~~~~~~~~~~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                                       -+...+.++.  ....-++++-||. |++++..++.+.+||+..
T Consensus       249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             CCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence                             1111111221  2345678888987 788888889999999754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.95  E-value=0.21  Score=48.82  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecCCCeEEEE-
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKTNGDLYIA-  113 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~g~l~v~-  113 (359)
                      -.++++++|+.+++......-+..|...++++..                    .+...... ...+++++ .+.+... 
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir--------------------swKa~He~Pvi~ma~~~-~g~LlAtg  123 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR--------------------SWKAIHEAPVITMAFDP-TGTLLATG  123 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccchHhH--------------------hHhhccCCCeEEEEEcC-CCceEEec
Confidence            3478899999988888888888899988874321                    22222223 46889999 5655443 


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.+..+|.+.+..++.....+    ..+..+.+.|+-+ .|+--               .+...+.|..||..++..
T Consensus       124 gaD~~v~VWdi~~~~~th~fkG~g----GvVssl~F~~~~~-~~lL~---------------sg~~D~~v~vwnl~~~~t  183 (775)
T KOG0319|consen  124 GADGRVKVWDIKNGYCTHSFKGHG----GVVSSLLFHPHWN-RWLLA---------------SGATDGTVRVWNLNDKRT  183 (775)
T ss_pred             cccceEEEEEeeCCEEEEEecCCC----ceEEEEEeCCccc-hhhee---------------ecCCCceEEEEEcccCch
Confidence            333457788999887766433211    2456778888766 33331               124467788888875433


Q ss_pred             --EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          194 --TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       194 --~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                        .....+.....++++.+|+.. .++...+.-+..||+.
T Consensus       184 cl~~~~~H~S~vtsL~~~~d~~~-~ls~~RDkvi~vwd~~  222 (775)
T KOG0319|consen  184 CLHTMILHKSAVTSLAFSEDSLE-LLSVGRDKVIIVWDLV  222 (775)
T ss_pred             HHHHHHhhhhheeeeeeccCCce-EEEeccCcEEEEeehh
Confidence              112344567789999999875 4444566788999974

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.94  E-value=0.25  Score=43.64  Aligned_cols=138  Identities=12%  Similarity=0.037  Sum_probs=77.8

Q ss_pred             CCeEEEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          107 NGDLYIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       107 ~g~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      ++-.|+++.  ...|+.++.++..+..+..     ....-+..+++|+|+++-++-.                +..-.||
T Consensus       197 ~~~k~imsas~dt~i~lw~lkGq~L~~idt-----nq~~n~~aavSP~GRFia~~gF----------------TpDVkVw  255 (420)
T KOG2096|consen  197 GNAKYIMSASLDTKICLWDLKGQLLQSIDT-----NQSSNYDAAVSPDGRFIAVSGF----------------TPDVKVW  255 (420)
T ss_pred             CCceEEEEecCCCcEEEEecCCceeeeecc-----ccccccceeeCCCCcEEEEecC----------------CCCceEE
Confidence            455555433  4469999999655554432     1224456799999994433311                1222344


Q ss_pred             E--EeCCCCcEEEE------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC-------CCCccee-Eeec-CCCC
Q 018242          185 K--YDPATKQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-------SKAGTIE-IVAQ-LPGF  247 (359)
Q Consensus       185 ~--~d~~~~~~~~~------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~-------~~~~~~~-~~~~-~~~~  247 (359)
                      .  |.. .|+++.+      .++-......||+++.+ ..++-+.++.+..||.+-       +++.+.. .... .++-
T Consensus       256 E~~f~k-dG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~  333 (420)
T KOG2096|consen  256 EPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE  333 (420)
T ss_pred             EEEecc-CcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence            2  322 3444432      22334456788988876 466667778888887641       1111110 0111 2344


Q ss_pred             CCceEECCCCCEEEEEecCC
Q 018242          248 PDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       248 p~~i~~d~~G~lwv~~~~~~  267 (359)
                      |-.+...|+|.++..+.+..
T Consensus       334 p~RL~lsP~g~~lA~s~gs~  353 (420)
T KOG2096|consen  334 PVRLELSPSGDSLAVSFGSD  353 (420)
T ss_pred             ceEEEeCCCCcEEEeecCCc
Confidence            66789999999999888755

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.90  E-value=0.027  Score=49.52  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-CeEEEEe
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GDLYIAD  114 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~l~v~~  114 (359)
                      ....+.+||..+..+..+|.+..|+.++.+ ..+|...+..                 .  ....+.+-|++ ..+.|++
T Consensus       352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-----------------~--~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-----------------Y--PVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-----------------c--cceeEEEcCCCCceEEEEc
Confidence            356688899988888999999999998764 3333211100                 0  01122222222 2344445


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.++.++..+..++.+.. .......++ ..+.+|.|.++|-.                  +..+.+|++...+|.++
T Consensus       413 rsntv~imn~qGQvVrsfsS-GkREgGdFi-~~~lSpkGewiYci------------------gED~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  413 RSNTVYIMNMQGQVVRSFSS-GKREGGDFI-NAILSPKGEWIYCI------------------GEDGVLYCFSVLSGKLE  472 (508)
T ss_pred             CCCeEEEEeccceEEeeecc-CCccCCceE-EEEecCCCcEEEEE------------------ccCcEEEEEEeecCcee
Confidence            44555555555443333221 111112233 45788999967665                  33567999998888877


Q ss_pred             EEeC-CCCCCceEEEccCCCEEEEEecCCCEEE
Q 018242          195 VLLG-NLSFPNGVALSEDGNYILLAETTSCRIL  226 (359)
Q Consensus       195 ~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~  226 (359)
                      .... .-.-+-|++-.|..+ ++.+.+.++.+.
T Consensus       473 ~tl~VhEkdvIGl~HHPHqN-llAsYsEDgllK  504 (508)
T KOG0275|consen  473 RTLPVHEKDVIGLTHHPHQN-LLASYSEDGLLK  504 (508)
T ss_pred             eeeecccccccccccCcccc-hhhhhcccchhh
Confidence            6532 223456777666554 566655554443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=96.88  E-value=0.17  Score=46.76  Aligned_cols=155  Identities=13%  Similarity=0.034  Sum_probs=88.5

Q ss_pred             ceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .+|.|.|.. ..+|.++++|.|..-|.+++.+..+.                  .......-..++.+..+++.+++++.
T Consensus       238 s~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~------------------s~~~d~~~fs~~d~~~e~~~vl~~~~  299 (498)
T KOG4328|consen  238 SGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVL------------------SLDTDNIWFSSLDFSAESRSVLFGDN  299 (498)
T ss_pred             cceEecCCChhheeeeccCceeeeeeecchhhHHHh------------------hcCccceeeeeccccCCCccEEEeec
Confidence            377777753 23888889999998888876433221                  11111111235556776788888876


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--CcE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--KQV  193 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~  193 (359)
                      .+-...+|..++..+...-....   ..+..+++.|-..++.++ .+                ..+.+-.||...  ++.
T Consensus       300 ~G~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~NP~~p~~laT-~s----------------~D~T~kIWD~R~l~~K~  359 (498)
T KOG4328|consen  300 VGNFNVIDLRTDGSEYENLRLHK---KKITSVALNPVCPWFLAT-AS----------------LDQTAKIWDLRQLRGKA  359 (498)
T ss_pred             ccceEEEEeecCCccchhhhhhh---cccceeecCCCCchheee-cc----------------cCcceeeeehhhhcCCC
Confidence            65556667665443221111111   257788999887734444 22                223343445431  111


Q ss_pred             EEEe---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          194 TVLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       194 ~~~~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ..+.   .+-...+...|+|++.. +++...++.|.+||.
T Consensus       360 sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  360 SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS  398 (498)
T ss_pred             CcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence            1111   22344678899999886 566667789999986

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.87  E-value=0.18  Score=46.10  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=68.7

Q ss_pred             CCceEEEccCCCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           35 GPESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      .||+|++.++|.+||.+-..      ..|+++++++.-...+..+...........     . .......-+|++++++.
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~-----~-~~~N~G~E~la~~~dG~  159 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTS-----G-RRNNRGFEGLAVSPDGR  159 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccc-----c-ccCCCCeEEEEECCCCC
Confidence            88999998889844444555      699999988543344433322211100000     0 01112345899999444


Q ss_pred             eEEEEeCC----------------CcEEEEeCCC-Ce-EEEEeecCCC----ccccccceEEEeCCCCEEEEEeCC
Q 018242          109 DLYIADAY----------------FGLLKVGPEG-GL-ATAVATQSEG----IPFRFCNSLDIDQSTGIIYFTDSS  162 (359)
Q Consensus       109 ~l~v~~~~----------------~~i~~~~~~~-~~-~~~~~~~~~~----~~~~~~~~l~~d~~g~~l~v~d~~  162 (359)
                      .||++...                ..|+++++.+ ++ ...+.-....    .....+.+++..++++ ++|-+..
T Consensus       160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~  234 (326)
T PF13449_consen  160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD  234 (326)
T ss_pred             EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence            48887421                1366778765 21 2222111111    1345778899999999 9998665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=96.86  E-value=0.036  Score=50.07  Aligned_cols=157  Identities=13%  Similarity=0.187  Sum_probs=95.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..+..++..++|+++++++...+.+.++...+.  .+..                   .......+|..+.+..++-...
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~-------------------~~~~v~~~~~ai~~~~~~~sv~  123 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL-------------------DVSCVPKRPTAISFIREDTSVL  123 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceee-------------------eEeecccCcceeeeeeccceEE
Confidence            356677777889988888888887666654431  1111                   1122334577788887677788


Q ss_pred             EEeCCCcEEEEeCCC---CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe-
Q 018242          112 IADAYFGLLKVGPEG---GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD-  187 (359)
Q Consensus       112 v~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d-  187 (359)
                      +++..+..+.++.-.   +..+.+..     ......++++++|+++|..+|.                  ..+|.... 
T Consensus       124 v~dkagD~~~~di~s~~~~~~~~~lG-----hvSml~dVavS~D~~~IitaDR------------------DEkIRvs~y  180 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCEPILG-----HVSMLLDVAVSPDDQFIITADR------------------DEKIRVSRY  180 (390)
T ss_pred             EEeecCCceeeeeecccccCcchhhh-----hhhhhheeeecCCCCEEEEecC------------------CceEEEEec
Confidence            887766677666433   32222221     2346678999999995555542                  33343322 


Q ss_pred             CCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242          188 PATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK  234 (359)
Q Consensus       188 ~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~  234 (359)
                      |.+...+.+ .++-.+...+++.++ . ++++..++++|+.|++...+
T Consensus       181 pa~f~IesfclGH~eFVS~isl~~~-~-~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  181 PATFVIESFCLGHKEFVSTISLTDN-Y-LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             CcccchhhhccccHhheeeeeeccC-c-eeeecCCCCcEEEEecccCC
Confidence            122222222 234456788888754 3 68899999999999987553

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.85  E-value=0.4  Score=44.55  Aligned_cols=181  Identities=18%  Similarity=0.215  Sum_probs=93.1

Q ss_pred             CCc-eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPE-SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~-~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      +|- ++-+..+|+.+..+.-++.+..||..++++++-                    +... ..| ++.++-.+..-|++
T Consensus       277 gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~--------------------f~~~-s~~-~lDVdW~~~~~F~t  334 (524)
T KOG0273|consen  277 GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ--------------------FEFH-SAP-ALDVDWQSNDEFAT  334 (524)
T ss_pred             CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe--------------------eeec-cCC-ccceEEecCceEee
Confidence            443 777888999677778889999999987755431                    1111 112 33334334444444


Q ss_pred             -eCCCcEE--EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC-
Q 018242          114 -DAYFGLL--KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA-  189 (359)
Q Consensus       114 -~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-  189 (359)
                       .....|.  +++.+.-. ..+..     ....++.|.++|.|. |..+-+.                 ++.+-.|+.. 
T Consensus       335 s~td~~i~V~kv~~~~P~-~t~~G-----H~g~V~alk~n~tg~-LLaS~Sd-----------------D~TlkiWs~~~  390 (524)
T KOG0273|consen  335 SSTDGCIHVCKVGEDRPV-KTFIG-----HHGEVNALKWNPTGS-LLASCSD-----------------DGTLKIWSMGQ  390 (524)
T ss_pred             cCCCceEEEEEecCCCcc-eeeec-----ccCceEEEEECCCCc-eEEEecC-----------------CCeeEeeecCC
Confidence             3333344  44443222 22222     234678999999999 8777433                 2333333321 


Q ss_pred             CCcEEEEeCCC-------CCCce-EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242          190 TKQVTVLLGNL-------SFPNG-VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       190 ~~~~~~~~~~~-------~~p~g-ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  261 (359)
                      .+.+..+...-       ..|.| +.-.|..+..+.+...++.|..||+..+..  .-.|.....-...+++.++|++..
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEE
Confidence            11111111111       12222 111232233455556778999999765421  111222122236789999997665


Q ss_pred             EE
Q 018242          262 GI  263 (359)
Q Consensus       262 ~~  263 (359)
                      ..
T Consensus       469 sG  470 (524)
T KOG0273|consen  469 SG  470 (524)
T ss_pred             ec
Confidence            33

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=96.84  E-value=0.057  Score=48.84  Aligned_cols=147  Identities=16%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPE  125 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~  125 (359)
                      +|..+..+..|..||..+++...                    .+. .......+.|.. +|.+++++..+ .|..+|+.
T Consensus       146 VLlsag~Dn~v~iWnv~tgeali--------------------~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr  203 (472)
T KOG0303|consen  146 VLLSAGSDNTVSIWNVGTGEALI--------------------TLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPR  203 (472)
T ss_pred             hHhhccCCceEEEEeccCCceee--------------------ecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCC
Confidence            35555567889999998874221                    222 223345778888 88888876544 58899999


Q ss_pred             CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCce
Q 018242          126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG  205 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~g  205 (359)
                      ++++..-.   .......+....+-.+|. ++.+-.+.+-              .-.+..+|++.-+.-.....+...+|
T Consensus       204 ~~~~v~e~---~~heG~k~~Raifl~~g~-i~tTGfsr~s--------------eRq~aLwdp~nl~eP~~~~elDtSnG  265 (472)
T KOG0303|consen  204 RGTVVSEG---VAHEGAKPARAIFLASGK-IFTTGFSRMS--------------ERQIALWDPNNLEEPIALQELDTSNG  265 (472)
T ss_pred             CCcEeeec---ccccCCCcceeEEeccCc-eeeecccccc--------------ccceeccCcccccCcceeEEeccCCc
Confidence            88764322   112233556677778888 6666333211              11355666653222222233344566


Q ss_pred             EE---EccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          206 VA---LSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       206 ia---~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +.   +++|.+.+|+.+-.++.|.-|.+..+
T Consensus       266 vl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  266 VLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             eEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            54   47899999999999999988887654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=96.83  E-value=0.12  Score=45.33  Aligned_cols=109  Identities=11%  Similarity=-0.007  Sum_probs=76.5

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ...+.|++..+.|.++.+.+.+..|+...........  .+   ..+-+.++.++-. +|++                  
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~---~plL~c~F~d~~~-~~~G------------------   71 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HG---APLLDCAFADEST-IVTG------------------   71 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--cC---CceeeeeccCCce-EEEe------------------
Confidence            3467788878999999877778888877654332211  11   1223556666666 8887                  


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      +..|.|.++|.+++....+..+......|...+... .+++.+.+++|..||..
T Consensus        72 ~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   72 GLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPR  124 (323)
T ss_pred             ccCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecc
Confidence            346789999999887777666666667777775433 78899999999999964

>PHA02713 hypothetical protein; Provisional

Probab=96.82  E-value=0.5  Score=46.59  Aligned_cols=124  Identities=12%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCCe
Q 018242           56 RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGGL  128 (359)
Q Consensus        56 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~~  128 (359)
                      .+.+||+.+++|..++..+                   ......+++..  ++.||+....       +.+.+||+.++.
T Consensus       273 ~v~~yd~~~~~W~~l~~mp-------------------~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~  331 (557)
T PHA02713        273 CILVYNINTMEYSVISTIP-------------------NHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKI  331 (557)
T ss_pred             CEEEEeCCCCeEEECCCCC-------------------ccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence            4788999998887654211                   00112344443  7788886431       237899999888


Q ss_pred             EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---e
Q 018242          129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---G  205 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---g  205 (359)
                      +..+..-    +......-+..-+|+ ||+.-...            .......+.+|||.+++...+. .+..+.   +
T Consensus       332 W~~~~~m----~~~R~~~~~~~~~g~-IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~  393 (557)
T PHA02713        332 HVELPPM----IKNRCRFSLAVIDDT-IYAIGGQN------------GTNVERTIECYTMGDDKWKMLP-DMPIALSSYG  393 (557)
T ss_pred             EeeCCCC----cchhhceeEEEECCE-EEEECCcC------------CCCCCceEEEEECCCCeEEECC-CCCccccccc
Confidence            7654321    111111223334667 99872110            0011235899999987765543 222221   2


Q ss_pred             EEEccCCCEEEEEec
Q 018242          206 VALSEDGNYILLAET  220 (359)
Q Consensus       206 ia~~~d~~~l~v~~~  220 (359)
                      .+. -++ .+|+.+-
T Consensus       394 ~~~-~~g-~IYviGG  406 (557)
T PHA02713        394 MCV-LDQ-YIYIIGG  406 (557)
T ss_pred             EEE-ECC-EEEEEeC
Confidence            222 244 4788754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=96.79  E-value=0.081  Score=53.55  Aligned_cols=104  Identities=10%  Similarity=0.042  Sum_probs=64.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.++.++|++.++.....++.|..||..+-  ....                  .+.....-+.|+.+|| -|+.+.+.
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~------------------vl~~H~s~VKGvs~DP-~Gky~ASq  189 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLK------------------VLRGHQSLVKGVSWDP-IGKYFASQ  189 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccc--eeee------------------eeecccccccceEECC-ccCeeeee
Confidence            3347889999997777778899999998764  2221                  3334445578999999 77777765


Q ss_pred             CCCc-EEEEeCCC-CeEEEEeecCCC-ccccccceEEEeCCCCEEEEE
Q 018242          115 AYFG-LLKVGPEG-GLATAVATQSEG-IPFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus       115 ~~~~-i~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~d~~g~~l~v~  159 (359)
                      ..++ |..++... +-.+.+..++.. ........+.++|||.+|-..
T Consensus       190 sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~  237 (942)
T KOG0973|consen  190 SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP  237 (942)
T ss_pred             cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence            5554 55555333 222223222221 122356778999999944333

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.78  E-value=0.38  Score=43.30  Aligned_cols=211  Identities=15%  Similarity=0.073  Sum_probs=103.3

Q ss_pred             CCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           31 EGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      ++-.--.+|.+.+||..|..+. .+..|+.||++++.-..+                    .....+...-+.++|++..
T Consensus       193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------------------~~~glgg~slLkwSPdgd~  252 (445)
T KOG2139|consen  193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------------------IPKGLGGFSLLKWSPDGDV  252 (445)
T ss_pred             CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------------------cccCCCceeeEEEcCCCCE
Confidence            3333345899999999666544 446899999998732211                    1112223334678994444


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccc-cccceeeeeecCCCce----EE
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ-RRNHISVILSGDKTGR----LM  184 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~-~~~~~~~~~~~~~~g~----v~  184 (359)
                      +|.+ .-+++.++=-++...+...-..   ....+..-+++|+|++|.++.++..-- +-....+-......+.    +.
T Consensus       253 lfaA-t~davfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ll  328 (445)
T KOG2139|consen  253 LFAA-TCDAVFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLL  328 (445)
T ss_pred             EEEe-cccceeeeehhcccceecceec---cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeee
Confidence            5554 4455565532233322111111   112566789999999888886543200 0000000000000000    11


Q ss_pred             EEeCCCCcEEEEeCC----CCCCceEEEccCCCEEEEEecCCCEEEEEEcC-----CCCCcceeEe-ec--CCCCCCceE
Q 018242          185 KYDPATKQVTVLLGN----LSFPNGVALSEDGNYILLAETTSCRILRYWLK-----TSKAGTIEIV-AQ--LPGFPDNIK  252 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~-----~~~~~~~~~~-~~--~~~~p~~i~  252 (359)
                      ..|..  ++. +..+    ...+.-+|+||.|.+|.+.-.....|..+..-     ..+...++.. ..  -...|.-|.
T Consensus       329 iaDL~--e~t-i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~Is  405 (445)
T KOG2139|consen  329 IADLQ--EVT-ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYIS  405 (445)
T ss_pred             eccch--hhh-hhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEE
Confidence            11111  100 0111    23467899999999888887776644333211     1111112211 11  112355566


Q ss_pred             E---CCCCCEEEEEecCCC
Q 018242          253 R---SPRGGFWVGIHSRRK  268 (359)
Q Consensus       253 ~---d~~G~lwv~~~~~~~  268 (359)
                      +   +.+|.+..-.+..+.
T Consensus       406 F~pl~n~g~lLsiaWsTGr  424 (445)
T KOG2139|consen  406 FGPLKNEGRLLSIAWSTGR  424 (445)
T ss_pred             eeecccCCcEEEEEeccCc
Confidence            6   467888887776554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.78  E-value=0.045  Score=48.94  Aligned_cols=187  Identities=15%  Similarity=0.187  Sum_probs=103.0

Q ss_pred             CCceEEEccCC-CeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDALG-EGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      +-.+++-+|.. ..++.+..+|.|..||..+.. ...                     +....+-..||+++. ...+.+
T Consensus        68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---------------------f~AH~G~V~Gi~v~~-~~~~tv  125 (433)
T KOG0268|consen   68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---------------------FKAHEGLVRGICVTQ-TSFFTV  125 (433)
T ss_pred             ccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---------------------eecccCceeeEEecc-cceEEe
Confidence            44566666654 347788899999999997742 222                     223334468999997 566666


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ++ ...|-.+..++.....+...      ....+|.-...++ ++.+.                   ...|-.||..-..
T Consensus       126 gd-DKtvK~wk~~~~p~~tilg~------s~~~gIdh~~~~~-~FaTc-------------------Ge~i~IWD~~R~~  178 (433)
T KOG0268|consen  126 GD-DKTVKQWKIDGPPLHTILGK------SVYLGIDHHRKNS-VFATC-------------------GEQIDIWDEQRDN  178 (433)
T ss_pred             cC-CcceeeeeccCCcceeeecc------ccccccccccccc-ccccc-------------------CceeeecccccCC
Confidence            65 33455555444322222210      1222333333444 44441                   1135555553211


Q ss_pred             -EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccc
Q 018242          193 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS  271 (359)
Q Consensus       193 -~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~  271 (359)
                       +..+.-+......+.+.|-...++.+...+..|..||+......+ ++.  +...++.|++.|++..+++.....+   
T Consensus       179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi--~~mRTN~IswnPeafnF~~a~ED~n---  252 (433)
T KOG0268|consen  179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVI--LTMRTNTICWNPEAFNFVAANEDHN---  252 (433)
T ss_pred             ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eee--eeccccceecCccccceeecccccc---
Confidence             111222222234566777655567777677899999986542211 111  2335788999998888887777665   


Q ss_pred             cccccCC
Q 018242          272 KLVLSFP  278 (359)
Q Consensus       272 ~~~~~~~  278 (359)
                        ++.|+
T Consensus       253 --lY~~D  257 (433)
T KOG0268|consen  253 --LYTYD  257 (433)
T ss_pred             --ceehh
Confidence              55555

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=96.77  E-value=0.08  Score=48.14  Aligned_cols=136  Identities=12%  Similarity=0.068  Sum_probs=85.9

Q ss_pred             CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeC
Q 018242           45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGP  124 (359)
Q Consensus        45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~  124 (359)
                      +.....+..++.|..||..+.....                    . .+..+....+.++.++..+..+...+.+-.+|.
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~--------------------s-v~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTR--------------------S-VPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             ceeeeecccccceEEEeccCCceee--------------------E-eecCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence            3335667788899999976542211                    1 233345667777775566776665666888888


Q ss_pred             CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC---C
Q 018242          125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL---S  201 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~  201 (359)
                      .+..+.+...-..-......+.++++|++.  |++                .++-.|.|+.|+..+++++......   +
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~--Yva----------------AGS~dgsv~iW~v~tgKlE~~l~~s~s~~  432 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGS--YVA----------------AGSADGSVYIWSVFTGKLEKVLSLSTSNA  432 (459)
T ss_pred             ccccEEEEeeccccccccccceeEECCCCc--eee----------------eccCCCcEEEEEccCceEEEEeccCCCCc
Confidence            877765543211111122456789999998  555                1345678999999999888764332   2


Q ss_pred             CCceEEEccCCCEEEEEe
Q 018242          202 FPNGVALSEDGNYILLAE  219 (359)
Q Consensus       202 ~p~gia~~~d~~~l~v~~  219 (359)
                      ....+++++.|..|.-++
T Consensus       433 aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  433 AITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             ceEEEEEcCCCchhhccc
Confidence            345678888887655554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.077  Score=48.22  Aligned_cols=184  Identities=17%  Similarity=0.203  Sum_probs=101.4

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEE-cCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWH-QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ..+++..+|..+-++..+|.+..|+ |.-....                     .......+...|.|++ |+++.++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---------------------~e~~~~~eV~DL~FS~-dgk~lasig  205 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---------------------EEIAHHAEVKDLDFSP-DGKFLASIG  205 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh---------------------hhHhhcCccccceeCC-CCcEEEEec
Confidence            6889999988788888889999999 6543111                     1222334566788999 888777765


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC--CEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--C
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST--GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--K  191 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g--~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~  191 (359)
                      ......++..++..  +....+.........+.+..++  ..++++....               +.+.|..++...  +
T Consensus       206 ~d~~~VW~~~~g~~--~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~---------------~~~~v~~~~~~~w~~  268 (398)
T KOG0771|consen  206 ADSARVWSVNTGAA--LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF---------------PGGGVRLCDISLWSG  268 (398)
T ss_pred             CCceEEEEeccCch--hhhcCCcccchhhhhceecccCCCceEEEEEecC---------------CCCceeEEEeeeecc
Confidence            55667778777732  2221111111122233333333  3377775431               223333332211  1


Q ss_pred             ----cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEE
Q 018242          192 ----QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVG  262 (359)
Q Consensus       192 ----~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~  262 (359)
                          ..+...........++.+.||+.+-+ .+.++.|..|+...-+  ....+.+ ..+...++.+.|+-+.-..
T Consensus       269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~Al-GT~dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  269 SNFLRLRKKIKRFKSISSLAVSDDGKFLAL-GTMDGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             ccccchhhhhhccCcceeEEEcCCCcEEEE-eccCCcEEEEEeceee--eeEeehhhheeeeeeEEEcCCcCcccc
Confidence                11122223445678899999985444 5567889988854321  1111222 2234567788776654443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.73  E-value=0.42  Score=43.20  Aligned_cols=249  Identities=14%  Similarity=0.134  Sum_probs=119.6

Q ss_pred             EEEccCCCeeEEec-C---------CCEEEEEEcCCcceEEEe-ecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242           39 LAFDALGEGPYTGV-S---------DGRIIKWHQDQRRWLHFA-RTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN  107 (359)
Q Consensus        39 i~~~~~G~~l~~~~-~---------~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (359)
                      +.++|||+.+|+.. .         ..-|..||..+-+.+..- .|+++|..              ....+.-+.++.++
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--------------~~~~~~~~~ls~dg  106 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--------------VVPYKNMFALSADG  106 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----------------BS--GGGEEE-TTS
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--------------ecccccceEEccCC
Confidence            77899999888653 1         146778999886544322 22111110              11234456788878


Q ss_pred             CeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE-
Q 018242          108 GDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM-  184 (359)
Q Consensus       108 g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~-  184 (359)
                      ..+||.+..  ..|-.+|...+++....+ .+     .+..+.-..+.++.-++                   ..|.+. 
T Consensus       107 k~~~V~N~TPa~SVtVVDl~~~kvv~ei~-~P-----GC~~iyP~~~~~F~~lC-------------------~DGsl~~  161 (342)
T PF06433_consen  107 KFLYVQNFTPATSVTVVDLAAKKVVGEID-TP-----GCWLIYPSGNRGFSMLC-------------------GDGSLLT  161 (342)
T ss_dssp             SEEEEEEESSSEEEEEEETTTTEEEEEEE-GT-----SEEEEEEEETTEEEEEE-------------------TTSCEEE
T ss_pred             cEEEEEccCCCCeEEEEECCCCceeeeec-CC-----CEEEEEecCCCceEEEe-------------------cCCceEE
Confidence            889998654  369999999888743222 11     22222222222212222                   122333 


Q ss_pred             -EEeCCCCcEEEEeCCC----CCC--ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-------CCCCCc
Q 018242          185 -KYDPATKQVTVLLGNL----SFP--NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-------PGFPDN  250 (359)
Q Consensus       185 -~~d~~~~~~~~~~~~~----~~p--~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~p~~  250 (359)
                       .+|.+ |+........    ..|  +.-++..++.++|+. +.++.|+..++.+........+.-.       .-.|.|
T Consensus       162 v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG  239 (342)
T PF06433_consen  162 VTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG  239 (342)
T ss_dssp             EEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred             EEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence             23333 2322211111    111  222344455556664 5778999999876643322222211       113444


Q ss_pred             ---eEECC-CCCEEEEEecC----CCccccccccCC-ccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEE
Q 018242          251 ---IKRSP-RGGFWVGIHSR----RKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL  321 (359)
Q Consensus       251 ---i~~d~-~G~lwv~~~~~----~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  321 (359)
                         +++.+ .|+||+....+    ++.-..-++.++ .+++.+.++++..+ +.++.+.-+.. ..++..+.....+..|
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~-P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDK-PLLYALSAGDGTLDVY  317 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS--EEEEEETTTTEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCC-cEEEEEcCCCCeEEEE
Confidence               67765 67899866532    222223345544 46777777776422 22333333333 4555555555555555


Q ss_pred             EccCCceee
Q 018242          322 EEIGRKMWR  330 (359)
Q Consensus       322 ~~~~g~~~~  330 (359)
                      ....|+...
T Consensus       318 D~~tGk~~~  326 (342)
T PF06433_consen  318 DAATGKLVR  326 (342)
T ss_dssp             ETTT--EEE
T ss_pred             eCcCCcEEe
Confidence            544554433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.70  E-value=0.0096  Score=36.07  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=31.6

Q ss_pred             CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .....|+++++++.++.+||++...+.|.+.++++.
T Consensus         6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            456779999999999999999999999999988653

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.68  E-value=0.018  Score=51.11  Aligned_cols=179  Identities=13%  Similarity=0.128  Sum_probs=97.7

Q ss_pred             EccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEE
Q 018242           41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLL  120 (359)
Q Consensus        41 ~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~  120 (359)
                      .+-+.+++..++.+..|..||-++++-..                    ...+...+..++.|.  +|.+..+.....+.
T Consensus       243 Lqyd~rviisGSSDsTvrvWDv~tge~l~--------------------tlihHceaVLhlrf~--ng~mvtcSkDrsia  300 (499)
T KOG0281|consen  243 LQYDERVIVSGSSDSTVRVWDVNTGEPLN--------------------TLIHHCEAVLHLRFS--NGYMVTCSKDRSIA  300 (499)
T ss_pred             eeccceEEEecCCCceEEEEeccCCchhh--------------------HHhhhcceeEEEEEe--CCEEEEecCCceeE
Confidence            33344556667777777777777662110                    223344556778886  56665555445577


Q ss_pred             EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC
Q 018242          121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL  200 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~  200 (359)
                      .+|+....-..+.....+ ....+|-+.  -+.+ +.|+-++                 .-.|-.++.++.++.....+ 
T Consensus       301 VWdm~sps~it~rrVLvG-HrAaVNvVd--fd~k-yIVsASg-----------------DRTikvW~~st~efvRtl~g-  358 (499)
T KOG0281|consen  301 VWDMASPTDITLRRVLVG-HRAAVNVVD--FDDK-YIVSASG-----------------DRTIKVWSTSTCEFVRTLNG-  358 (499)
T ss_pred             EEeccCchHHHHHHHHhh-hhhheeeec--cccc-eEEEecC-----------------CceEEEEeccceeeehhhhc-
Confidence            777654321111000111 011333333  4445 4555333                 23577788877776654332 


Q ss_pred             CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          201 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       201 ~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                       .-.|||.-.-...+.|+++.+++|..|++..+..  .+.+.....+...+.+|. -+|.-+..++.
T Consensus       359 -HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--LRvLeGHEeLvRciRFd~-krIVSGaYDGk  421 (499)
T KOG0281|consen  359 -HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFDN-KRIVSGAYDGK  421 (499)
T ss_pred             -ccccceehhccCeEEEecCCCceEEEEeccccHH--HHHHhchHHhhhheeecC-ceeeeccccce
Confidence             3478887655556999999999999999865422  111111223455677764 34655666554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.67  E-value=0.34  Score=43.60  Aligned_cols=142  Identities=12%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +++|.|+-.. .|+.+|.++=+.-+-....+..+ ....++..+.++.  |++-.+              ....|.|+.|
T Consensus        97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~-~gl~AlS~n~~n~--ylAyp~--------------s~t~GdV~l~  158 (391)
T KOG2110|consen   97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP-KGLCALSPNNANC--YLAYPG--------------STTSGDVVLF  158 (391)
T ss_pred             cceEEEEEcc-cEEEEecccceeehhhhccCCCc-cceEeeccCCCCc--eEEecC--------------CCCCceEEEE
Confidence            5677777533 49999987644322112111111 1223344444444  666221              1235789999


Q ss_pred             eCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEE
Q 018242          187 DPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       187 d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~  263 (359)
                      |..+-+.. .+..+-.....++|+++|. ++.+.++.++|.|.-.-++.. ....|..  .+.....+++++++.+..++
T Consensus       159 d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~-kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ-KLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc-EeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            98753322 2333334457899999997 788888888887754322211 1112211  12224458999999877777


Q ss_pred             ecCCC
Q 018242          264 HSRRK  268 (359)
Q Consensus       264 ~~~~~  268 (359)
                      .....
T Consensus       237 S~TeT  241 (391)
T KOG2110|consen  237 SNTET  241 (391)
T ss_pred             cCCCe
Confidence            66554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.62  Score=46.86  Aligned_cols=157  Identities=8%  Similarity=0.097  Sum_probs=99.9

Q ss_pred             CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      +-.+.-+++|.|.--.+.++...|.|..||-.-+...                    -.+....+..+|++|.+ .+-+|
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--------------------~rFdeHdGpVRgv~FH~-~qplF   66 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--------------------DRFDEHDGPVRGVDFHP-TQPLF   66 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--------------------hhhhccCCccceeeecC-CCCeE
Confidence            3346679999998774556778899999998654211                    13444556678999999 99999


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      |+...+ .|-+++.++++...  ....  ....+..+.++++-  -||-..+                .+.+|..|+=.+
T Consensus        67 VSGGDDykIkVWnYk~rrclf--tL~G--HlDYVRt~~FHhey--PWIlSAS----------------DDQTIrIWNwqs  124 (1202)
T KOG0292|consen   67 VSGGDDYKIKVWNYKTRRCLF--TLLG--HLDYVRTVFFHHEY--PWILSAS----------------DDQTIRIWNWQS  124 (1202)
T ss_pred             EecCCccEEEEEecccceehh--hhcc--ccceeEEeeccCCC--ceEEEcc----------------CCCeEEEEeccC
Confidence            985433 36677777665421  1111  12355566676654  5776332                344666677666


Q ss_pred             CcEEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          191 KQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       191 ~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ++...+..+ ....--..|.|... ++|+.+-+.+|.+||+.+
T Consensus       125 r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  125 RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence            666544432 22222334556443 899999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=96.64  E-value=0.18  Score=44.45  Aligned_cols=189  Identities=14%  Similarity=0.077  Sum_probs=98.3

Q ss_pred             eEEEEecCCCe-EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242           99 LGLCFNKTNGD-LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus        99 ~gi~~~~~~g~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ..+.|++ .|. |.++-..+.++.||..|.....+..    ....-+..++++++|+ ..++.+                
T Consensus        27 ~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~ls----aH~~pi~sl~WS~dgr-~LltsS----------------   84 (405)
T KOG1273|consen   27 ECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLS----AHVRPITSLCWSRDGR-KLLTSS----------------   84 (405)
T ss_pred             ceEEecc-CcceeeeeccCCcEEEEEccccchhhhhh----ccccceeEEEecCCCC-Eeeeec----------------
Confidence            4566887 555 4455555668899988765432211    1123456899999999 666632                


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----CCCCCCce
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----LPGFPDNI  251 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i  251 (359)
                       +.-.+..||...+...... .+..| .+..+.|..+...++......-+..+..++   ....+..     +...++..
T Consensus        85 -~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   85 -RDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHG  159 (405)
T ss_pred             -CCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccc
Confidence             2335777887666532211 12222 455566544444554444444555555432   1222211     11123334


Q ss_pred             EECCCCCEEEEEecCCCccccccccCC-ccceeeecCCccc-eeeeeecccccCcceEEEEECCCCCEEEEEE
Q 018242          252 KRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDI-VKIHSSLVKLSGNGGMAMRISEQGNVLEILE  322 (359)
Q Consensus       252 ~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  322 (359)
                      .+|+.|++.++....|.     +.+++ .+-+..+.+.... +.+-++.+...+   ..+.+|-..+++++|.
T Consensus       160 ~fdr~g~yIitGtsKGk-----llv~~a~t~e~vas~rits~~~IK~I~~s~~g---~~liiNtsDRvIR~ye  224 (405)
T KOG1273|consen  160 VFDRRGKYIITGTSKGK-----LLVYDAETLECVASFRITSVQAIKQIIVSRKG---RFLIINTSDRVIRTYE  224 (405)
T ss_pred             cccCCCCEEEEecCcce-----EEEEecchheeeeeeeechheeeeEEEEeccC---cEEEEecCCceEEEEe
Confidence            68899986555555554     34433 3445544443322 333333333332   3455676777777764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.63  E-value=0.12  Score=45.39  Aligned_cols=157  Identities=13%  Similarity=0.183  Sum_probs=92.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.+|.+.|.|..+.+++....+..||.++-+  -|.  +.+      |.+       ...+....+.+++ .++||++..
T Consensus       219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q--cfv--san------Pd~-------qht~ai~~V~Ys~-t~~lYvTaS  280 (430)
T KOG0640|consen  219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ--CFV--SAN------PDD-------QHTGAITQVRYSS-TGSLYVTAS  280 (430)
T ss_pred             eeeEeecCCCceEEEecCCCceeEEecccee--Eee--ecC------ccc-------ccccceeEEEecC-CccEEEEec
Confidence            3589999999988899998889999988753  121  001      211       1123355677888 999999877


Q ss_pred             CCc-EEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          116 YFG-LLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       116 ~~~-i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .+| |-.+|--.++ ++.+..   ......+....+..+|+  |+-.+                +....|..|...+++.
T Consensus       281 kDG~IklwDGVS~rCv~t~~~---AH~gsevcSa~Ftkn~k--yiLsS----------------G~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  281 KDGAIKLWDGVSNRCVRTIGN---AHGGSEVCSAVFTKNGK--YILSS----------------GKDSTVKLWEISTGRM  339 (430)
T ss_pred             cCCcEEeeccccHHHHHHHHh---hcCCceeeeEEEccCCe--EEeec----------------CCcceeeeeeecCCce
Confidence            665 6666644332 222211   11223455678899998  33322                2344566676666655


Q ss_pred             EEEeCCC--C----CCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          194 TVLLGNL--S----FPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       194 ~~~~~~~--~----~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      .....+.  .    ...-..|.....+++..+...+.+..||..
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence            4332211  0    011122444445666667777889999854

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.63  E-value=0.052  Score=47.86  Aligned_cols=165  Identities=14%  Similarity=0.095  Sum_probs=91.9

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      +++..+++++|++||..+|++.. .-|..+|.. .+......        .....+     .....+-...++++|.+-.
T Consensus       156 de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy--------~t~~~~-----k~gq~giisc~a~sP~~~~  221 (406)
T KOG2919|consen  156 DEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVY--------TTVTKG-----KFGQKGIISCFAFSPMDSK  221 (406)
T ss_pred             HhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcch--------hhhhcc-----cccccceeeeeeccCCCCc
Confidence            45678899999999997777766 468888863 22111000        000000     0001112345678876654


Q ss_pred             -EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          110 -LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       110 -l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                       +-++...+.+-.+..+++..-.+..   + ....+..+.+.++|+++|.+..                 ....|.+||.
T Consensus       222 ~~a~gsY~q~~giy~~~~~~pl~llg---g-h~gGvThL~~~edGn~lfsGaR-----------------k~dkIl~WDi  280 (406)
T KOG2919|consen  222 TLAVGSYGQRVGIYNDDGRRPLQLLG---G-HGGGVTHLQWCEDGNKLFSGAR-----------------KDDKILCWDI  280 (406)
T ss_pred             ceeeecccceeeeEecCCCCceeeec---c-cCCCeeeEEeccCcCeeccccc-----------------CCCeEEEEee
Confidence             4444544444444444443222221   1 2346778999999998888732                 2347888887


Q ss_pred             CCCcEEEEe---CCC-CCCceEEEc--cCCCEEEEEecCCCEEEEEEcCC
Q 018242          189 ATKQVTVLL---GNL-SFPNGVALS--EDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       189 ~~~~~~~~~---~~~-~~p~gia~~--~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      .- ....+.   ... ..-+-|-|+  |+++ .+.+...++.|.+||+++
T Consensus       281 R~-~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  281 RY-SRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hh-ccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCC
Confidence            52 111111   111 123445554  6676 566666788999999865

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.62  E-value=0.45  Score=42.03  Aligned_cols=175  Identities=14%  Similarity=0.066  Sum_probs=96.2

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC--CeEEEEeCCCcEEE
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN--GDLYIADAYFGLLK  121 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~--g~l~v~~~~~~i~~  121 (359)
                      +|+.+..+..+..|..||...+.  +..                  .+-...+..+.+-|.+.-  .+|.-+...+.|..
T Consensus        52 s~~~~aSGssDetI~IYDm~k~~--qlg------------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   52 SGPYVASGSSDETIHIYDMRKRK--QLG------------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cceeEeccCCCCcEEEEeccchh--hhc------------------ceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            46644556677899999987651  111                  111122334555565422  25666554445777


Q ss_pred             EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC
Q 018242          122 VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS  201 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~  201 (359)
                      ++.+.  +..+ ....+.. ..+++|+++|.|+ |-++..+                 ++.+..||.-.|+...+..-..
T Consensus       112 w~~~~--W~~~-~slK~H~-~~Vt~lsiHPS~K-LALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~  169 (362)
T KOG0294|consen  112 WRVGS--WELL-KSLKAHK-GQVTDLSIHPSGK-LALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKN  169 (362)
T ss_pred             EEcCC--eEEe-eeecccc-cccceeEecCCCc-eEEEEcC-----------------CceeeeehhhcCccceeeccCC
Confidence            76543  3222 2122112 2489999999999 8887433                 3456667765554433322223


Q ss_pred             CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242          202 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       202 ~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      .+.-+.|+|.|.+.++..  .+.|-.|.++....-.   ....+..+-.+.++..+.+.+|...
T Consensus       170 ~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~~---~i~~~~r~l~~~~l~~~~L~vG~d~  228 (362)
T KOG0294|consen  170 KATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVFR---EIENPKRILCATFLDGSELLVGGDN  228 (362)
T ss_pred             cceeeEEcCCCCEEEEEe--ccEEEEEecccHhHhh---hhhccccceeeeecCCceEEEecCC
Confidence            456688999998666654  4567777664322110   1112333555666666667776543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.58  E-value=0.22  Score=42.91  Aligned_cols=154  Identities=14%  Similarity=0.055  Sum_probs=94.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-+++.+|.+-+.+.++..+..+..||-++++...                     ..........+.|+. +|++.++.
T Consensus        54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la---------------------~~k~~~~Vk~~~F~~-~gn~~l~~  111 (327)
T KOG0643|consen   54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA---------------------TWKTNSPVKRVDFSF-GGNLILAS  111 (327)
T ss_pred             eEEEEEecCCcceeeeccccceeEEEEcCCCcEEE---------------------EeecCCeeEEEeecc-CCcEEEEE
Confidence            44577777777767788888888889888773221                     111223346788888 67766553


Q ss_pred             CCC------cEEEEeCCCCeE-----EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          115 AYF------GLLKVGPEGGLA-----TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       115 ~~~------~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..+      -|..++......     +++.. +. .+...+....+++-+. ..|+                 +...|.|
T Consensus       112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k-I~-t~~skit~a~Wg~l~~-~ii~-----------------Ghe~G~i  171 (327)
T KOG0643|consen  112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK-IP-TPDSKITSALWGPLGE-TIIA-----------------GHEDGSI  171 (327)
T ss_pred             ehhhcCcceEEEEEEccCChhhhcccCceEE-ec-CCccceeeeeecccCC-EEEE-----------------ecCCCcE
Confidence            321      255665542210     11111 01 1224566778888888 4444                 2346789


Q ss_pred             EEEeCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          184 MKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       184 ~~~d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      -.||..++....-.  .+....+.+.+++|.. .+++.+.+.+-..+|..
T Consensus       172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR  220 (327)
T ss_pred             EEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeecc
Confidence            99999876433211  2234678899999986 78888888777778754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.55  E-value=0.29  Score=45.26  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             EEEEecCCCe-EEEEeC--CC---cEEEEeCCCCeEEEEeecCCCccccccceEEEe-CCCC-EEEEEeCCCccccccce
Q 018242          100 GLCFNKTNGD-LYIADA--YF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-QSTG-IIYFTDSSSQFQRRNHI  171 (359)
Q Consensus       100 gi~~~~~~g~-l~v~~~--~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-~~g~-~l~v~d~~~~~~~~~~~  171 (359)
                      .+.+.+ +++ +++.-.  ..   .+..+|..++..+.+.......-........+- +++. ++|+++.          
T Consensus       188 ~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~----------  256 (353)
T PF00930_consen  188 RVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISER----------  256 (353)
T ss_dssp             EEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEET----------
T ss_pred             cceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEc----------
Confidence            455667 455 777632  22   377888887766544432221111222344443 4444 5666641          


Q ss_pred             eeeeecCCCceEEEEeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecC----CCEEEEEEcC-CCCCcceeEeecCC
Q 018242          172 SVILSGDKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETT----SCRILRYWLK-TSKAGTIEIVAQLP  245 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~  245 (359)
                            ....+|+.++.+++..+.+..+.... .-+.++++++.+|.....    ...|++.+++ +.   ..+.+... 
T Consensus       257 ------~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~-  326 (353)
T PF00930_consen  257 ------DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCE-  326 (353)
T ss_dssp             ------TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTT-
T ss_pred             ------CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCC-
Confidence                  23457999999887766543333223 457788998889988876    3489999876 32   22333222 


Q ss_pred             CCCC-ceEECCCCCEEEEEec
Q 018242          246 GFPD-NIKRSPRGGFWVGIHS  265 (359)
Q Consensus       246 ~~p~-~i~~d~~G~lwv~~~~  265 (359)
                      .... .+.++++|+.++-+..
T Consensus       327 ~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  327 DGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             SSTTEEEEE-TTSSEEEEEEE
T ss_pred             CCCceEEEECCCCCEEEEEEc
Confidence            2234 7899999998886554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.48  E-value=0.13  Score=43.60  Aligned_cols=155  Identities=8%  Similarity=0.076  Sum_probs=95.3

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .+-..+.+..+-.+++.+..+..+..||=....++.+.                  .+.........+.+.  +.++..+
T Consensus       102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ------------------ildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen  102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ------------------ILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc------------------hhhhhcCceeEEEec--ccEEEee
Confidence            35567888888887888888899999998776444332                  222222223334333  4555555


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.+..||+..|....  + .-+   ..++.+.++++|+...++                  ...+.+..+|.++|++
T Consensus       162 S~DGtvRtydiR~G~l~s--D-y~g---~pit~vs~s~d~nc~La~------------------~l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  162 SVDGTVRTYDIRKGTLSS--D-YFG---HPITSVSFSKDGNCSLAS------------------SLDSTLRLLDKETGKL  217 (307)
T ss_pred             ccCCcEEEEEeecceeeh--h-hcC---CcceeEEecCCCCEEEEe------------------eccceeeecccchhHH
Confidence            545558889987776431  1 111   245778999999955555                  2345788889888875


Q ss_pred             EEEeCC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TVLLGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~~~~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .....+   ...--..++... ....++.++++.++.||+-..
T Consensus       218 L~sYkGhkn~eykldc~l~qs-dthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  218 LKSYKGHKNMEYKLDCCLNQS-DTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             HHHhcccccceeeeeeeeccc-ceeEEeccCCceEEEEEeccc
Confidence            432211   111223445433 346888899999999998654

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.48  E-value=1  Score=44.45  Aligned_cols=179  Identities=17%  Similarity=0.154  Sum_probs=99.6

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .+++++++.. +..+..++.+-.||.++.+ .+++                       ..+...+..|-|-+..+.++..
T Consensus       377 Rsl~vS~d~~-~~~Sga~~SikiWn~~t~kciRTi-----------------------~~~y~l~~~Fvpgd~~Iv~G~k  432 (888)
T KOG0306|consen  377 RSLCVSSDSI-LLASGAGESIKIWNRDTLKCIRTI-----------------------TCGYILASKFVPGDRYIVLGTK  432 (888)
T ss_pred             eEEEeecCce-eeeecCCCcEEEEEccCcceeEEe-----------------------ccccEEEEEecCCCceEEEecc
Confidence            4777877776 5555555789999998752 2222                       1234556667774555666654


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC-------
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP-------  188 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~-------  188 (359)
                      .+.+..||......-   ...+. ....+..+...||++ =+++-+.                 +..|-.||-       
T Consensus       433 ~Gel~vfdlaS~~l~---Eti~A-HdgaIWsi~~~pD~~-g~vT~sa-----------------DktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  433 NGELQVFDLASASLV---ETIRA-HDGAIWSISLSPDNK-GFVTGSA-----------------DKTVKFWDFKLVVSVP  490 (888)
T ss_pred             CCceEEEEeehhhhh---hhhhc-cccceeeeeecCCCC-ceEEecC-----------------CcEEEEEeEEEEeccC
Confidence            555888887654321   11111 123567788899988 5555322                 111222211       


Q ss_pred             CCC-cEEEEeC--CC---CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--CCCC-CceEECCCCCE
Q 018242          189 ATK-QVTVLLG--NL---SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFP-DNIKRSPRGGF  259 (359)
Q Consensus       189 ~~~-~~~~~~~--~~---~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p-~~i~~d~~G~l  259 (359)
                      .+. ++..+.+  .+   ...-.+.++||+++|-++. -++++.+|-++.-     +-+..+  +.+| -.|.+++|+++
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDtl-----KFflsLYGHkLPV~smDIS~DSkl  564 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDTL-----KFFLSLYGHKLPVLSMDISPDSKL  564 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe-ccCeEEEEEecce-----eeeeeecccccceeEEeccCCcCe
Confidence            111 1000100  01   1234667899999766665 5679999987653     223322  2234 45777888888


Q ss_pred             EEEEecCC
Q 018242          260 WVGIHSRR  267 (359)
Q Consensus       260 wv~~~~~~  267 (359)
                      .++.....
T Consensus       565 ivTgSADK  572 (888)
T KOG0306|consen  565 IVTGSADK  572 (888)
T ss_pred             EEeccCCC
Confidence            88766544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=96.47  E-value=0.87  Score=43.53  Aligned_cols=173  Identities=18%  Similarity=0.203  Sum_probs=96.3

Q ss_pred             ceEEEccCCCeeE-EecCCCEEEEEEcCCcceEE----------EeecCCCCCCCCCCcccccccccccCCc------c-
Q 018242           37 ESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLH----------FARTSPNRDGCEGAYEYDHAAKEHICGR------P-   98 (359)
Q Consensus        37 ~~i~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p-   98 (359)
                      ..|-+.+||+.++ ++++.-.|.+||...-+.+.          |-...+.+.-...-...+.+++....+.      | 
T Consensus        55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~  134 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPK  134 (703)
T ss_pred             ceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCc
Confidence            4788999999666 35555788888875432222          2211111110000000011122111111      1 


Q ss_pred             --eEEEEecCCCeEEEEeCCCcEEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 --LGLCFNKTNGDLYIADAYFGLLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 --~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                        ..|+++.-.-.||++..+..|||++++.|.+- ++..     .....|.+.+.+-.. |..+                
T Consensus       135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-----~~~~lN~v~in~~hg-Lla~----------------  192 (703)
T KOG2321|consen  135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-----DSGELNVVSINEEHG-LLAC----------------  192 (703)
T ss_pred             CCccccccCCCccEEEeecCcceEEEEcccccccccccc-----ccccceeeeecCccc-eEEe----------------
Confidence              13455554667888877778999999988753 2211     123456677777766 6555                


Q ss_pred             ecCCCceEEEEeCCCCcEE-EEe---C--------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          176 SGDKTGRLMKYDPATKQVT-VLL---G--------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~-~~~---~--------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                       ++..|.|-.||+.+.... .+.   .        ....+..+.|..||= -+-.++.++.++.||+...
T Consensus       193 -Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~  260 (703)
T KOG2321|consen  193 -GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRAS  260 (703)
T ss_pred             -cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccC
Confidence             344677888988764321 111   1        123356888876664 4556677889999998653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.42  Score=39.87  Aligned_cols=182  Identities=17%  Similarity=0.140  Sum_probs=95.2

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCC---CEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc--ccCCcceEE
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSD---GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE--HICGRPLGL  101 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~gi  101 (359)
                      +++.+.-..-.++..+ +|. ++.++..   ..|+++|..+++.....                  .+.  ...+  -|+
T Consensus        39 ~yphDs~sfTQGL~~~-~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~------------------~l~~~~~Fg--EGi   96 (262)
T COG3823          39 TYPHDSTSFTQGLEYL-DGH-ILESTGLYGFSKIRVSDLTTGQEIFSE------------------KLAPDTVFG--EGI   96 (262)
T ss_pred             eccCchhhhhcceeee-CCE-EEEeccccccceeEEEeccCceEEEEe------------------ecCCccccc--cce
Confidence            5555555566677776 445 7766543   68999999977543321                  111  0111  133


Q ss_pred             EEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          102 CFNKTNGDLYIADAYFG-LLKVGPEGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      .-.  ++.+|.-++..+ -+++|.++-+  .+.. ..++    .-.+++-|.+ + ||.+|-                  
T Consensus        97 t~~--gd~~y~LTw~egvaf~~d~~t~~--~lg~~~y~G----eGWgLt~d~~-~-LimsdG------------------  148 (262)
T COG3823          97 TKL--GDYFYQLTWKEGVAFKYDADTLE--ELGRFSYEG----EGWGLTSDDK-N-LIMSDG------------------  148 (262)
T ss_pred             eec--cceEEEEEeccceeEEEChHHhh--hhcccccCC----cceeeecCCc-c-eEeeCC------------------
Confidence            322  677888887766 4567766432  1111 1111    2235555433 3 777743                  


Q ss_pred             CceEEEEeCCCC----cEEEEeCC--CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---------
Q 018242          180 TGRLMKYDPATK----QVTVLLGN--LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---------  244 (359)
Q Consensus       180 ~g~v~~~d~~~~----~~~~~~~~--~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------  244 (359)
                      ...+...||++-    ++.....+  ...-|-+.+ -||. +|..-..+.+|.+++.+.++   ...+.++         
T Consensus       149 satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~-lyANVw~t~~I~rI~p~sGr---V~~widlS~L~~~~~~  223 (262)
T COG3823         149 SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGE-LYANVWQTTRIARIDPDSGR---VVAWIDLSGLLKELNL  223 (262)
T ss_pred             ceEEEecCHHHhhhcceEEEEECCeecccccceee-eccE-EEEeeeeecceEEEcCCCCc---EEEEEEccCCchhcCc
Confidence            235666777642    22221221  112234443 2554 66666667788888865443   2222221         


Q ss_pred             ----CCCCCceEECCCC-CEEEEE
Q 018242          245 ----PGFPDNIKRSPRG-GFWVGI  263 (359)
Q Consensus       245 ----~~~p~~i~~d~~G-~lwv~~  263 (359)
                          ...++||+.|+++ +++++.
T Consensus       224 ~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         224 DKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cccccccccceeecCcCCeEEEec
Confidence                1247789998876 677753

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.45  E-value=0.0052  Score=33.68  Aligned_cols=28  Identities=18%  Similarity=0.156  Sum_probs=23.0

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKW   60 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~   60 (359)
                      +..|.+++++++|+++.++..+++|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4689999999999966677888888764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=96.44  E-value=0.34  Score=43.76  Aligned_cols=175  Identities=14%  Similarity=0.149  Sum_probs=106.4

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCC-CCCCCCC-C-ccc--ccccccccCCcceEEEEecCCCe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP-NRDGCEG-A-YEY--DHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~-~-~~~--~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      .-+++..+++|.++..+..+..|-.|+..+.+...+..... .+..... + .+.  +.+.+.........+.+++ ...
T Consensus       195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v  273 (423)
T KOG0313|consen  195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV  273 (423)
T ss_pred             ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence            45688899999978888999999999932221111110000 0000000 0 000  0011111112234566776 788


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      +|-+.+.+.|.++|.+++....-..  .   ....+.+...+..+ |.++-..                 .-.+..+||.
T Consensus       274 ~yS~SwDHTIk~WDletg~~~~~~~--~---~ksl~~i~~~~~~~-Ll~~gss-----------------dr~irl~DPR  330 (423)
T KOG0313|consen  274 IYSVSWDHTIKVWDLETGGLKSTLT--T---NKSLNCISYSPLSK-LLASGSS-----------------DRHIRLWDPR  330 (423)
T ss_pred             eEeecccceEEEEEeecccceeeee--c---CcceeEeecccccc-eeeecCC-----------------CCceeecCCC
Confidence            8888777789999998876432111  1   12456677778777 7777322                 3357889997


Q ss_pred             CCcEEE----EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          190 TKQVTV----LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       190 ~~~~~~----~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ++.-..    +..+.....++.++|...+++++.+.++++..||....
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            654322    23444567889999998899999999999999997654

>PRK13684 Ycf48-like protein; Provisional

Probab=96.44  E-value=0.72  Score=42.28  Aligned_cols=190  Identities=14%  Similarity=0.191  Sum_probs=88.8

Q ss_pred             eCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      .+.-....+|+|..+.+.++++. .+.|++=.-.+..|+.....                 ..........+.+..  ++
T Consensus        42 ~~~~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~-----------------~~~~~~~l~~v~~~~--~~  101 (334)
T PRK13684         42 LPTEANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLD-----------------LPEENFRLISISFKG--DE  101 (334)
T ss_pred             cCCCCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccC-----------------CcccccceeeeEEcC--Cc
Confidence            34334666888886666344554 57777654444446543210                 000011133565653  45


Q ss_pred             EEEEeCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          110 LYIADAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      .|++...+.|++ ..++| ..+.+... ...+ ..+..+....++. +|+.                  ...|.|++-+.
T Consensus       102 ~~~~G~~g~i~~-S~DgG~tW~~~~~~-~~~~-~~~~~i~~~~~~~-~~~~------------------g~~G~i~~S~D  159 (334)
T PRK13684        102 GWIVGQPSLLLH-TTDGGKNWTRIPLS-EKLP-GSPYLITALGPGT-AEMA------------------TNVGAIYRTTD  159 (334)
T ss_pred             EEEeCCCceEEE-ECCCCCCCeEccCC-cCCC-CCceEEEEECCCc-ceee------------------eccceEEEECC
Confidence            677654444555 34443 34433211 0011 1233444444444 5555                  22356776654


Q ss_pred             CCCcEEEEeCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEec
Q 018242          189 ATKQVTVLLGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       189 ~~~~~~~~~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      .+...+.+.... ...+++++.+++.  ++.-...+.+++-. +.... ..+.... ......++.+.++|++|+....
T Consensus       160 gG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~g~~G~i~~s~-~~gg~-tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        160 GGKNWEALVEDAAGVVRNLRRSPDGK--YVAVSSRGNFYSTW-EPGQT-AWTPHQRNSSRRLQSMGFQPDGNLWMLARG  234 (334)
T ss_pred             CCCCceeCcCCCcceEEEEEECCCCe--EEEEeCCceEEEEc-CCCCC-eEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence            444544433222 2245777777764  33333445565531 11111 1111111 1223466788788888886544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=96.40  E-value=0.042  Score=49.84  Aligned_cols=151  Identities=17%  Similarity=0.198  Sum_probs=95.6

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .++.++++|..+..+..+|.|-.|+++-+-++.+.                    .+.....+.++|++ ++..|++-..
T Consensus       142 r~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~--------------------ahh~eaIRdlafSp-nDskF~t~Sd  200 (464)
T KOG0284|consen  142 RTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ--------------------AHHAEAIRDLAFSP-NDSKFLTCSD  200 (464)
T ss_pred             eeEEEccCCCEEEEcCCCceEEecccchhhhHHhh--------------------HhhhhhhheeccCC-CCceeEEecC
Confidence            48889999995556667778888998876333221                    11123467899999 6666665444


Q ss_pred             Cc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          117 FG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       117 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ++ |..+|..-.+-+.... .   ....+..+.+.|... +.++                 ++...-|-.+||.++....
T Consensus       201 Dg~ikiWdf~~~kee~vL~-G---HgwdVksvdWHP~kg-Lias-----------------gskDnlVKlWDprSg~cl~  258 (464)
T KOG0284|consen  201 DGTIKIWDFRMPKEERVLR-G---HGWDVKSVDWHPTKG-LIAS-----------------GSKDNLVKLWDPRSGSCLA  258 (464)
T ss_pred             CCeEEEEeccCCchhheec-c---CCCCcceeccCCccc-eeEE-----------------ccCCceeEeecCCCcchhh
Confidence            44 5556654333222211 1   223566788888877 6665                 2334467789999876543


Q ss_pred             -EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          196 -LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       196 -~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                       +.......-++.|.+++++ +.+.+.+..+..||+.
T Consensus       259 tlh~HKntVl~~~f~~n~N~-Llt~skD~~~kv~DiR  294 (464)
T KOG0284|consen  259 TLHGHKNTVLAVKFNPNGNW-LLTGSKDQSCKVFDIR  294 (464)
T ss_pred             hhhhccceEEEEEEcCCCCe-eEEccCCceEEEEehh
Confidence             2333445668889999974 5566677889999975

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.39  E-value=0.047  Score=51.96  Aligned_cols=123  Identities=19%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             CCCCCCceEEEccC-CCeeEEecCC----------------CEEEEEEcCCc-------ceEEEeecCCCCCCCCCCccc
Q 018242           31 EGAIGPESLAFDAL-GEGPYTGVSD----------------GRIIKWHQDQR-------RWLHFARTSPNRDGCEGAYEY   86 (359)
Q Consensus        31 ~~~~~p~~i~~~~~-G~~l~~~~~~----------------~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~   86 (359)
                      ..+.+||+|++.|. |.++++.+++                |.|++|=+.++       +|..|......... ...+..
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~-~~~~~~  492 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVL-EGGASA  492 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccc-cccccc
Confidence            35679999999986 5644444433                57899988765       56666644322111 000000


Q ss_pred             ccccccccCCcceEEEEecCCCeEEEEeCCC---------cEEE---EeCCCCeEEEEeecCCCccccccceEEEeCCCC
Q 018242           87 DHAAKEHICGRPLGLCFNKTNGDLYIADAYF---------GLLK---VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG  154 (359)
Q Consensus        87 ~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~---------~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~  154 (359)
                       -+. ......|.+|+||+ .|+|||++...         |+.-   =++++++++.+....   ....+.+.+++|||+
T Consensus       493 -~~~-~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P---~g~E~tG~~FspD~~  566 (616)
T COG3211         493 -NIN-ANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGP---IGCEFTGPCFSPDGK  566 (616)
T ss_pred             -Ccc-cccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCC---CcceeecceeCCCCc
Confidence             000 12234588999999 99999986432         2221   234455555443211   123456789999999


Q ss_pred             EEEEEe
Q 018242          155 IIYFTD  160 (359)
Q Consensus       155 ~l~v~d  160 (359)
                      .+||.-
T Consensus       567 TlFV~v  572 (616)
T COG3211         567 TLFVNV  572 (616)
T ss_pred             eEEEEe
Confidence            888884

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.33  E-value=0.9  Score=42.26  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=82.8

Q ss_pred             EccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEE
Q 018242           41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLL  120 (359)
Q Consensus        41 ~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~  120 (359)
                      ...+|+ +|+...+|.|+.+|++++.........               ........  ++...  +|++|+++..+.++
T Consensus        65 ~~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~---------------~~~~~~~~--~~~~~--~G~i~~g~~~g~~y  124 (370)
T COG1520          65 ADGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLL---------------GAVAQLSG--PILGS--DGKIYVGSWDGKLY  124 (370)
T ss_pred             EeeCCe-EEEecCCCcEEEEeCCCCcEEecccCc---------------CcceeccC--ceEEe--CCeEEEecccceEE
Confidence            666788 888888889999999987532211000               00011111  22233  89999998665599


Q ss_pred             EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC-
Q 018242          121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-  199 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-  199 (359)
                      .+|.++|+..-... ... . .....-.+-.++. +|+..                  ..+.++.++.++++....... 
T Consensus       125 ~ld~~~G~~~W~~~-~~~-~-~~~~~~~v~~~~~-v~~~s------------------~~g~~~al~~~tG~~~W~~~~~  182 (370)
T COG1520         125 ALDASTGTLVWSRN-VGG-S-PYYASPPVVGDGT-VYVGT------------------DDGHLYALNADTGTLKWTYETP  182 (370)
T ss_pred             EEECCCCcEEEEEe-cCC-C-eEEecCcEEcCcE-EEEec------------------CCCeEEEEEccCCcEEEEEecC
Confidence            99997776543322 111 0 1111224445677 88872                  245789999888877654211 


Q ss_pred             ----CCCCceEEEccCCCEEEEEecC-CCEEEEEEcCCC
Q 018242          200 ----LSFPNGVALSEDGNYILLAETT-SCRILRYWLKTS  233 (359)
Q Consensus       200 ----~~~p~gia~~~d~~~l~v~~~~-~~~i~~~~~~~~  233 (359)
                          ........ ..++ .+|+.... +..++.++...+
T Consensus       183 ~~~~~~~~~~~~-~~~~-~vy~~~~~~~~~~~a~~~~~G  219 (370)
T COG1520         183 APLSLSIYGSPA-IASG-TVYVGSDGYDGILYALNAEDG  219 (370)
T ss_pred             CccccccccCce-eecc-eEEEecCCCcceEEEEEccCC
Confidence                11111112 2233 36776543 446888887443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.19  E-value=0.37  Score=47.52  Aligned_cols=150  Identities=19%  Similarity=0.223  Sum_probs=83.7

Q ss_pred             CCCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           44 LGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        44 ~G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      +|.++.++-.+      ..+.+||+.+++|+..+...                   ....-.+++.-  +|.||+....+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~-------------------~~R~~~~v~~l--~g~iYavGG~d  390 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN-------------------TKRSDFGVAVL--DGKLYAVGGFD  390 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCcc-------------------CccccceeEEE--CCEEEEEeccc
Confidence            34534455444      46789999999887654211                   11112345444  78999864332


Q ss_pred             ------cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          118 ------GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       118 ------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                            .+-+||+++.+++.+..-..   ...-.+ +..-+|+ ||+.-....           .......+.+|||.++
T Consensus       391 g~~~l~svE~YDp~~~~W~~va~m~~---~r~~~g-v~~~~g~-iYi~GG~~~-----------~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  391 GEKSLNSVECYDPVTNKWTPVAPMLT---RRSGHG-VAVLGGK-LYIIGGGDG-----------SSNCLNSVECYDPETN  454 (571)
T ss_pred             cccccccEEEecCCCCcccccCCCCc---ceeeeE-EEEECCE-EEEEcCcCC-----------CccccceEEEEcCCCC
Confidence                  38899999999876543111   111122 3334677 999832100           0002246899999998


Q ss_pred             cEEEEeCCCCCC---ceEEEccCCCEEEEEecCCC-----EEEEEEcCCC
Q 018242          192 QVTVLLGNLSFP---NGVALSEDGNYILLAETTSC-----RILRYWLKTS  233 (359)
Q Consensus       192 ~~~~~~~~~~~p---~gia~~~d~~~l~v~~~~~~-----~i~~~~~~~~  233 (359)
                      ..+... .+..+   .|++.. ++ .||+....++     .+.+||...+
T Consensus       455 ~W~~~~-~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  455 TWTLIA-PMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ceeecC-CcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCCCC
Confidence            876543 22222   344443 33 4888765442     4777875443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.08  E-value=1.2  Score=41.73  Aligned_cols=254  Identities=13%  Similarity=0.077  Sum_probs=105.0

Q ss_pred             cCCCEEEEeeCCC-CCCceEEEc-----------cCCCeeEEe-cCCCEEEEEEcCCcce--EEEeecCCCCCCCCCCcc
Q 018242           21 STQGVVQYQIEGA-IGPESLAFD-----------ALGEGPYTG-VSDGRIIKWHQDQRRW--LHFARTSPNRDGCEGAYE   85 (359)
Q Consensus        21 ~~~~~~~~~~~~~-~~p~~i~~~-----------~~G~~l~~~-~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~   85 (359)
                      ++|.+-++..+.. ...+-.=+.           .+-+.||+. ...++|+.+|..++..  +....        ..|.+
T Consensus        51 YgqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv--------Ie~~e  122 (461)
T PF05694_consen   51 YGQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV--------IEPEE  122 (461)
T ss_dssp             TTSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE--------E-HHH
T ss_pred             cccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee--------eCHHH
Confidence            3566667777654 455544443           234456654 4668999999875410  10000        00000


Q ss_pred             cccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEE
Q 018242           86 YDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYF  158 (359)
Q Consensus        86 ~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v  158 (359)
                         +........|+.....+ +|+++|+..+       +++..+|-++-++.-.-.. ......+..++-..|..+ +.|
T Consensus       123 ---v~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~n-vMi  196 (461)
T PF05694_consen  123 ---VFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHN-VMI  196 (461)
T ss_dssp             ---HHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--S-B-TT------EEEETTTT-EEE
T ss_pred             ---HHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceecc-CCCCCCCCCCeEEcCCCC-EEE
Confidence               00011224577776777 8988887432       2588888887655432222 112234667888999999 777


Q ss_pred             EeCCCcccc--cccee-eeeecCCCceEEEEeCCCCcEEEEeCCC---CCCceEEE--ccCCCEEEEEecCCCEEEEEEc
Q 018242          159 TDSSSQFQR--RNHIS-VILSGDKTGRLMKYDPATKQVTVLLGNL---SFPNGVAL--SEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       159 ~d~~~~~~~--~~~~~-~~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~p~gia~--~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      +.....+..  ..... .+..+....++..||-.+++..+...-.   ..|-.+-+  +|+..+-|+....+..|++|..
T Consensus       197 SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k  276 (461)
T PF05694_consen  197 SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYK  276 (461)
T ss_dssp             E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE
T ss_pred             EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEE
Confidence            743221110  00100 1111122346888998877766543211   22434444  4556677888888889999876


Q ss_pred             CCCCCcceeEeec-------------C-------CCCCCceEECCCCC-EEEEEecCCCccccccccCCccceeeecCCc
Q 018242          231 KTSKAGTIEIVAQ-------------L-------PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  289 (359)
Q Consensus       231 ~~~~~~~~~~~~~-------------~-------~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  289 (359)
                      +.+..=..+...+             +       |+++.+|.++.|.+ ||++++.-+. +-.+-..++..-++..++.+
T Consensus       277 ~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~l  355 (461)
T PF05694_consen  277 DDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFL  355 (461)
T ss_dssp             -ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-
T ss_pred             cCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCc-EEEEecCCCCCCcEEeEEEE
Confidence            3221101111111             1       45677888888775 9999998664 12222223345555554433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.05  E-value=0.61  Score=41.22  Aligned_cols=151  Identities=9%  Similarity=0.082  Sum_probs=87.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.++++.|.|++...-..++.+..||+-+++.-.                     .......+.-+.+++ .|.-|+...
T Consensus       130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~---------------------v~~L~~~at~v~w~~-~Gd~F~v~~  187 (362)
T KOG0294|consen  130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF---------------------VLNLKNKATLVSWSP-QGDHFVVSG  187 (362)
T ss_pred             cceeEecCCCceEEEEcCCceeeeehhhcCccce---------------------eeccCCcceeeEEcC-CCCEEEEEe
Confidence            6689999999955555566889999987763211                     122334455688998 555444434


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .++|-.+..++..+-..   ... + ..+..+.+...+. +.++                  ...+.|..+|.++.....
T Consensus       188 ~~~i~i~q~d~A~v~~~---i~~-~-~r~l~~~~l~~~~-L~vG------------------~d~~~i~~~D~ds~~~~~  243 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFRE---IEN-P-KRILCATFLDGSE-LLVG------------------GDNEWISLKDTDSDTPLT  243 (362)
T ss_pred             ccEEEEEecccHhHhhh---hhc-c-ccceeeeecCCce-EEEe------------------cCCceEEEeccCCCccce
Confidence            56777777665443111   110 1 1233345555554 6666                  123457777776533221


Q ss_pred             -EeCCCCCCceEE-Ec-cCCCEEEEEecCCCEEEEEEcCCC
Q 018242          196 -LLGNLSFPNGVA-LS-EDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       196 -~~~~~~~p~gia-~~-~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                       +..+-...-+++ ++ |++ .++++.+.++.|.+||++-.
T Consensus       244 ~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  244 EFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence             222233344665 33 344 57888888899999998643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.05  E-value=1.1  Score=40.38  Aligned_cols=179  Identities=16%  Similarity=0.201  Sum_probs=82.8

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      .|.+.. .. .|+....+.|++-.-.+..|+.+..+                  ....+.+.++.... ++..+++...+
T Consensus        66 ~I~f~~-~~-g~ivG~~g~ll~T~DgG~tW~~v~l~------------------~~lpgs~~~i~~l~-~~~~~l~~~~G  124 (302)
T PF14870_consen   66 SISFDG-NE-GWIVGEPGLLLHTTDGGKTWERVPLS------------------SKLPGSPFGITALG-DGSAELAGDRG  124 (302)
T ss_dssp             EEEEET-TE-EEEEEETTEEEEESSTTSS-EE----------------------TT-SS-EEEEEEEE-TTEEEEEETT-
T ss_pred             EEEecC-Cc-eEEEcCCceEEEecCCCCCcEEeecC------------------CCCCCCeeEEEEcC-CCcEEEEcCCC
Confidence            455543 33 45544446666654444556654211                  12234566666555 66777776565


Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE-EeCCCCcEEEE
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK-YDPATKQVTVL  196 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~~~~~  196 (359)
                      .|++=.-.+...+.+...    ....++++...++|+++.++.                   .|.+++ +++.....+..
T Consensus       125 ~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~-------------------~G~~~~s~~~G~~~w~~~  181 (302)
T PF14870_consen  125 AIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSS-------------------RGNFYSSWDPGQTTWQPH  181 (302)
T ss_dssp             -EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEET-------------------TSSEEEEE-TT-SS-EEE
T ss_pred             cEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEEC-------------------cccEEEEecCCCccceEE
Confidence            677654444455554331    223567788889998444442                   345553 45532233333


Q ss_pred             eC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCC-----CceEECCCCCEEEEEecC
Q 018242          197 LG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFP-----DNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       197 ~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p-----~~i~~d~~G~lwv~~~~~  266 (359)
                      .. .....+.+.|.+++. ||+.. ..+.|..=+...    ..+.+.+  .+-..     -+++..+++.+|++...+
T Consensus       182 ~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  182 NRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             E--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccCccceehhceecCCCC-EEEEe-CCcEEEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            22 234457889999976 66655 555666554111    1233322  11111     236888889999977543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.04  E-value=1.3  Score=43.70  Aligned_cols=141  Identities=17%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-------cEEEEeCCCC
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-------GLLKVGPEGG  127 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-------~i~~~~~~~~  127 (359)
                      ..+-.||+.+++|...+..+                   ......++++.  ++.||+....+       .+.+||+.++
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~-------------------~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMP-------------------SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             ceeEEecCCcCcEeecCCCC-------------------cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            46779999998787764221                   11113456665  67899874332       3889999999


Q ss_pred             eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEE
Q 018242          128 LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA  207 (359)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia  207 (359)
                      +++.+..-..   ...-.+++ .-+|. ||+.--..   +         ......+-+|||.+.+...+..-...-.+.+
T Consensus       360 ~W~~~a~M~~---~R~~~~v~-~l~g~-iYavGG~d---g---------~~~l~svE~YDp~~~~W~~va~m~~~r~~~g  422 (571)
T KOG4441|consen  360 QWTPVAPMNT---KRSDFGVA-VLDGK-LYAVGGFD---G---------EKSLNSVECYDPVTNKWTPVAPMLTRRSGHG  422 (571)
T ss_pred             ceeccCCccC---ccccceeE-EECCE-EEEEeccc---c---------ccccccEEEecCCCCcccccCCCCcceeeeE
Confidence            8876432111   01111222 23566 88872110   0         0122369999999887776542222222333


Q ss_pred             EccCCCEEEEEecCC------CEEEEEEcCCC
Q 018242          208 LSEDGNYILLAETTS------CRILRYWLKTS  233 (359)
Q Consensus       208 ~~~d~~~l~v~~~~~------~~i~~~~~~~~  233 (359)
                      ...-++.+|+.+-.+      ..+.+||...+
T Consensus       423 v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~  454 (571)
T KOG4441|consen  423 VAVLGGKLYIIGGGDGSSNCLNSVECYDPETN  454 (571)
T ss_pred             EEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence            333334588887532      46777875543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.99  E-value=1.7  Score=42.44  Aligned_cols=198  Identities=13%  Similarity=0.108  Sum_probs=102.1

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEe-cCCCeEEEEeC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFN-KTNGDLYIADA  115 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~-~~~g~l~v~~~  115 (359)
                      .++..+... +..+..++.+..|++..+++....                  .+.. ...-+..+++. .+++.+.++..
T Consensus        19 ~v~~~~~~~-i~s~sRd~t~~vw~~~~~~~l~~~------------------~~~~~~g~i~~~i~y~e~~~~~l~~g~~   79 (745)
T KOG0301|consen   19 AVAVTDGVC-IISGSRDGTVKVWAKKGKQYLETH------------------AFEGPKGFIANSICYAESDKGRLVVGGM   79 (745)
T ss_pred             eeEecCCeE-EeecCCCCceeeeeccCcccccce------------------ecccCcceeeccceeccccCcceEeecc
Confidence            444444433 555666788899998776544210                  1111 11112224444 44667888866


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ...|.++.+.+...  +.... + ....+..+....++.  .++-                 +++.++.+|-.. .-...
T Consensus        80 D~~i~v~~~~~~~P--~~~Lk-g-H~snVC~ls~~~~~~--~iSg-----------------SWD~TakvW~~~-~l~~~  135 (745)
T KOG0301|consen   80 DTTIIVFKLSQAEP--LYTLK-G-HKSNVCSLSIGEDGT--LISG-----------------SWDSTAKVWRIG-ELVYS  135 (745)
T ss_pred             cceEEEEecCCCCc--hhhhh-c-cccceeeeecCCcCc--eEec-----------------ccccceEEecch-hhhcc
Confidence            66677877765542  22111 1 123455666666765  3442                 223333333322 11112


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccc
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVL  275 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~  275 (359)
                      ...+......++.-|++  .|++.+.+..|..|.-  ++  ..+.|.......+++++=+++.+.-+.+++.      +.
T Consensus       136 l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~~~~flScsNDg~------Ir  203 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGS------IR  203 (745)
T ss_pred             cCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEecCCCeEeecCCce------EE
Confidence            33344445666666776  7999999999988863  11  1222322223356666655544555554433      55


Q ss_pred             cCCccceeeecCCcc
Q 018242          276 SFPWIGNVLIKLPID  290 (359)
Q Consensus       276 ~~~~~g~~~~~~~~~  290 (359)
                      .++.+|+.+.+...+
T Consensus       204 ~w~~~ge~l~~~~gh  218 (745)
T KOG0301|consen  204 LWDLDGEVLLEMHGH  218 (745)
T ss_pred             EEeccCceeeeeecc
Confidence            566667766655443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=95.94  E-value=1.1  Score=39.50  Aligned_cols=150  Identities=12%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-C
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-Y  116 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-~  116 (359)
                      ++.+.+|+..++.+..+.+++.||..+++...                    .......-...+.-.. .|-..|++. .
T Consensus        95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r--------------------k~k~h~~~vNs~~p~r-rg~~lv~Sgsd  153 (338)
T KOG0265|consen   95 ELHGMRDGSHILSCGTDKTVRGWDAETGKRIR--------------------KHKGHTSFVNSLDPSR-RGPQLVCSGSD  153 (338)
T ss_pred             eeeeccCCCEEEEecCCceEEEEecccceeee--------------------hhccccceeeecCccc-cCCeEEEecCC
Confidence            55667888888888888999999988873211                    1111111122222222 333444432 2


Q ss_pred             C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          117 F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       117 ~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      . .+..+|.........   ..  ......++.+..++..+..+                  .-.+.|-.||+..+....
T Consensus       154 D~t~kl~D~R~k~~~~t---~~--~kyqltAv~f~d~s~qv~sg------------------gIdn~ikvWd~r~~d~~~  210 (338)
T KOG0265|consen  154 DGTLKLWDIRKKEAIKT---FE--NKYQLTAVGFKDTSDQVISG------------------GIDNDIKVWDLRKNDGLY  210 (338)
T ss_pred             CceEEEEeecccchhhc---cc--cceeEEEEEecccccceeec------------------cccCceeeeccccCcceE
Confidence            2 366667664332111   11  01123455665555423332                  223456678885555444


Q ss_pred             Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          196 LL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       196 ~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      +. +......++.++++|.. ..+++.++.+.+||..+
T Consensus       211 ~lsGh~DtIt~lsls~~gs~-llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  211 TLSGHADTITGLSLSRYGSF-LLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             EeecccCceeeEEeccCCCc-cccccccceEEEEEecc
Confidence            33 33445679999999984 66777888999999864

>PHA02713 hypothetical protein; Provisional

Probab=95.92  E-value=0.24  Score=48.79  Aligned_cols=149  Identities=10%  Similarity=0.119  Sum_probs=77.7

Q ss_pred             CCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC--
Q 018242           44 LGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY--  116 (359)
Q Consensus        44 ~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~--  116 (359)
                      +|+++.++..+     ..+.+||+.+++|+..+..+                  .. ..-.+++..  +|.||+....  
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp------------------~~-r~~~~~~~~--~g~IYviGG~~~  409 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP------------------IA-LSSYGMCVL--DQYIYIIGGRTE  409 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC------------------cc-cccccEEEE--CCEEEEEeCCCc
Confidence            56644444432     34788999998887654211                  00 111233332  7888885321  


Q ss_pred             ----------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          117 ----------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       117 ----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                                            +.+.+||+++++++.+..-..  +. ...++ +.-+|+ ||+.-....          
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r-~~~~~-~~~~~~-IYv~GG~~~----------  474 (557)
T PHA02713        410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GT-IRPGV-VSHKDD-IYVVCDIKD----------  474 (557)
T ss_pred             ccccccccccccccccccccccceEEEECCCCCeEeecCCCCc--cc-ccCcE-EEECCE-EEEEeCCCC----------
Confidence                                  237889999998876543111  11 11222 334566 999721100          


Q ss_pred             eecCCCceEEEEeCCC-CcEEEEeCCCCCC---ceEEEccCCCEEEEEecCCC--EEEEEEcCC
Q 018242          175 LSGDKTGRLMKYDPAT-KQVTVLLGNLSFP---NGVALSEDGNYILLAETTSC--RILRYWLKT  232 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~-~~~~~~~~~~~~p---~gia~~~d~~~l~v~~~~~~--~i~~~~~~~  232 (359)
                       .......+.+|||++ ++...+. .++.+   .+++.- ++ .+|+.+-.++  .+.+||+..
T Consensus       475 -~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~-~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        475 -EKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILH-DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             -CCccceeEEEecCCCCCCeeEcc-ccCcccccceeEEE-CC-EEEEEeeecceeehhhcCccc
Confidence             001113578999997 5665442 23222   233332 44 4888765444  566666543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.89  E-value=0.47  Score=45.84  Aligned_cols=156  Identities=19%  Similarity=0.201  Sum_probs=96.0

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-  115 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-  115 (359)
                      +|+.-.+|+.+..++.+-.|-.|++.... +..            .       .+.........+++-.++..++++.. 
T Consensus        78 DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------------s-------tir~H~DYVkcla~~ak~~~lvaSgGL  138 (735)
T KOG0308|consen   78 DIILCGNGKTLISASSDTTVKVWNAHKDNTFCM------------S-------TIRTHKDYVKCLAYIAKNNELVASGGL  138 (735)
T ss_pred             hHHhhcCCCceEEecCCceEEEeecccCcchhH------------h-------hhhcccchheeeeecccCceeEEecCC
Confidence            34444567667777888889999886541 110            0       11122234567777454777777643 


Q ss_pred             CCcEEEEeCCCCeEEEEee-------cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          116 YFGLLKVGPEGGLATAVAT-------QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      .+.|..+|.+++..+.+..       .....+...++.++..+.|. ++++                 ++..+.+..||+
T Consensus       139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivs-----------------Ggtek~lr~wDp  200 (735)
T KOG0308|consen  139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVS-----------------GGTEKDLRLWDP  200 (735)
T ss_pred             CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEe-----------------cCcccceEEecc
Confidence            3459999998774321111       01112344667788888886 7776                 344556888999


Q ss_pred             CCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          189 ATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       189 ~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      .+++-. .+.++......+.++.||.+ .++.+.++.|..|++.
T Consensus       201 rt~~kimkLrGHTdNVr~ll~~dDGt~-~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  201 RTCKKIMKLRGHTDNVRVLLVNDDGTR-LLSASSDGTIRLWDLG  243 (735)
T ss_pred             ccccceeeeeccccceEEEEEcCCCCe-EeecCCCceEEeeecc
Confidence            876433 34455556778888889985 5555667899999874

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=95.88  E-value=0.05  Score=32.71  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEc
Q 018242          151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALS  209 (359)
Q Consensus       151 ~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~  209 (359)
                      |+|++||+++..                 .+.|..+|+.+++..........|.+++++
T Consensus         1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            467779999654                 357888998877655444445678888774

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=95.86  E-value=0.6  Score=43.79  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             eEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242           99 LGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      +-+.+++....+......+| +..+|..+.....-....   ...-..+|++.|-...|+++.                 
T Consensus       168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~---HsAP~~gicfspsne~l~vsV-----------------  227 (673)
T KOG4378|consen  168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA---HSAPCRGICFSPSNEALLVSV-----------------  227 (673)
T ss_pred             EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh---ccCCcCcceecCCccceEEEe-----------------
Confidence            45677775556665544455 667787654321111111   112246789998877466652                 


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +.+-+|+.||........... ...| ..++|.++|. .+++++..+.|+.||+...
T Consensus       228 G~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  228 GYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             cccceEEEeecccccccceee-ecCCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence            224478889876543322111 2233 5789999986 5667778899999998643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.84  E-value=1.2  Score=40.16  Aligned_cols=168  Identities=18%  Similarity=0.187  Sum_probs=88.9

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      -.++++-|.|..+..+..+..|-.|+.+++. ..+|.                     ....=.+-+.+.. ||.|+.+-
T Consensus       196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---------------------~h~ewvr~v~v~~-DGti~As~  253 (406)
T KOG0295|consen  196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---------------------GHSEWVRMVRVNQ-DGTIIASC  253 (406)
T ss_pred             eeeEEEEecCCeeeecccccceeEEecccceeEEecc---------------------CchHhEEEEEecC-CeeEEEec
Confidence            3467788888867777888999999998872 22221                     1111123444555 78887764


Q ss_pred             CC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .. ..|..+-..+++-+.......    ..+.-+++-|+-.+-=+.+....   .+.......++++..|-.+|..++.+
T Consensus       254 s~dqtl~vW~~~t~~~k~~lR~hE----h~vEci~wap~~~~~~i~~at~~---~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  254 SNDQTLRVWVVATKQCKAELREHE----HPVECIAWAPESSYPSISEATGS---TNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             CCCceEEEEEeccchhhhhhhccc----cceEEEEecccccCcchhhccCC---CCCccEEEeecccceEEEEeccCCeE
Confidence            33 345555554442111000000    00001111111000000000000   00000111235566788888888876


Q ss_pred             EE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .. +........+++|+|.|++ +++-.++.+|.+||++..
T Consensus       327 L~tL~ghdnwVr~~af~p~Gky-i~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  327 LFTLVGHDNWVRGVAFSPGGKY-ILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             EEEEecccceeeeeEEcCCCeE-EEEEecCCcEEEEEeccc
Confidence            54 4456778899999999985 556678899999998653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.81  E-value=1.3  Score=41.64  Aligned_cols=147  Identities=13%  Similarity=0.081  Sum_probs=74.7

Q ss_pred             EEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           39 LAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      +...++|. +++-...|.+++-..++.. |+...                    ........++.+.+ ++.+|++...+
T Consensus       244 v~~~~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~--------------------~~~~~~l~~v~~~~-dg~l~l~g~~G  301 (398)
T PLN00033        244 VNRSPDGD-YVAVSSRGNFYLTWEPGQPYWQPHN--------------------RASARRIQNMGWRA-DGGLWLLTRGG  301 (398)
T ss_pred             EEEcCCCC-EEEEECCccEEEecCCCCcceEEec--------------------CCCccceeeeeEcC-CCCEEEEeCCc
Confidence            45667888 4444444566655444433 34332                    11112345677777 89999987666


Q ss_pred             cEEEEeCCCCeEE--EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          118 GLLKVGPEGGLAT--AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       118 ~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ++++-+-.+...+  .+...........+.++.+.+++. +|++                  ...|.+++-...+...+.
T Consensus       302 ~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~------------------G~~G~v~~s~D~G~tW~~  362 (398)
T PLN00033        302 GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAA------------------GGSGILLRSTDGGKSWKR  362 (398)
T ss_pred             eEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEE------------------ECCCcEEEeCCCCcceeE
Confidence            6665443332111  111111111112466788888888 9988                  223445554444334344


Q ss_pred             Ee--CCCC-CCceEEEccCCCEEEEEecCCCEEEEE
Q 018242          196 LL--GNLS-FPNGVALSEDGNYILLAETTSCRILRY  228 (359)
Q Consensus       196 ~~--~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~  228 (359)
                      ..  .... .-..+.|..+++ .|+.. .++.|.+|
T Consensus       363 ~~~~~~~~~~ly~v~f~~~~~-g~~~G-~~G~il~~  396 (398)
T PLN00033        363 DKGADNIAANLYSVKFFDDKK-GFVLG-NDGVLLRY  396 (398)
T ss_pred             ccccCCCCcceeEEEEcCCCc-eEEEe-CCcEEEEe
Confidence            32  1111 124666655554 66665 44566665

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=95.71  E-value=0.48  Score=43.16  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=60.4

Q ss_pred             ccCCcceEEEEecCCCeEEEEeCCCc-EEEEeCC--------C-----Ce-EEEEeecCCCccccccceEEEeCCCCEEE
Q 018242           93 HICGRPLGLCFNKTNGDLYIADAYFG-LLKVGPE--------G-----GL-ATAVATQSEGIPFRFCNSLDIDQSTGIIY  157 (359)
Q Consensus        93 ~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~--------~-----~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~  157 (359)
                      ......+.+.|++ +|++..+....| +..+...        +     .+ .... ....+ ....+.++++.++++ +.
T Consensus        63 ~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~-h~~diydL~Ws~d~~-~l  138 (434)
T KOG1009|consen   63 RHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-KVLRG-HRDDIYDLAWSPDSN-FL  138 (434)
T ss_pred             CCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE-EEecc-cccchhhhhccCCCc-ee
Confidence            3345577899999 888877644433 4444332        2     10 1000 11111 123577899999998 44


Q ss_pred             EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCE
Q 018242          158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNY  214 (359)
Q Consensus       158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~  214 (359)
                      ++-                 .....++.+|...|.+.... .+-..++|.|++|-+++
T Consensus       139 ~s~-----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy  179 (434)
T KOG1009|consen  139 VSG-----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY  179 (434)
T ss_pred             eee-----------------eccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence            442                 23456888888877776543 44567899999987753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=95.60  E-value=0.83  Score=44.55  Aligned_cols=107  Identities=7%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             cceEEEEecCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           97 RPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ..+.++.-+ ++ .|++...+. |..+.-+ ...+.+.    + ....+.++++-+++. +.-+                
T Consensus       142 sVWAv~~l~-e~-~~vTgsaDKtIklWk~~-~~l~tf~----g-HtD~VRgL~vl~~~~-flSc----------------  196 (745)
T KOG0301|consen  142 SVWAVASLP-EN-TYVTGSADKTIKLWKGG-TLLKTFS----G-HTDCVRGLAVLDDSH-FLSC----------------  196 (745)
T ss_pred             heeeeeecC-CC-cEEeccCcceeeeccCC-chhhhhc----c-chhheeeeEEecCCC-eEee----------------
Confidence            345666666 55 555544443 4444432 2222221    1 224677889888877 3222                


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                        +..|.|..++.++..+.....+-.....+....+++ ++++..++.++..|+.+
T Consensus       197 --sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  197 --SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             --cCCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC
Confidence              346778889886555555555555666777555544 78888888889888743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=2.5  Score=41.05  Aligned_cols=153  Identities=11%  Similarity=0.128  Sum_probs=90.2

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcc-eEEEEecCCCeEEEEe
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRP-LGLCFNKTNGDLYIAD  114 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~gi~~~~~~g~l~v~~  114 (359)
                      .++.+.|.---+.++..+|.+..||-++.. ++.|.                   ..   ..| +...|-+..+.+.++.
T Consensus        17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-------------------V~---~~PvRa~kfiaRknWiv~Gs   74 (794)
T KOG0276|consen   17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-------------------VS---EVPVRAAKFIARKNWIVTGS   74 (794)
T ss_pred             eeeecCCCCceEEEeeecCeeEEEecccceeeeeee-------------------ec---ccchhhheeeeccceEEEec
Confidence            477888887755578889999999988753 22221                   11   122 2333444244454554


Q ss_pred             CCCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ....|..|+..+.+. +.+..     ....+..|+++|.-= ..++.+. +              ..-+++-|+..=...
T Consensus        75 DD~~IrVfnynt~ekV~~FeA-----H~DyIR~iavHPt~P-~vLtsSD-D--------------m~iKlW~we~~wa~~  133 (794)
T KOG0276|consen   75 DDMQIRVFNYNTGEKVKTFEA-----HSDYIRSIAVHPTLP-YVLTSSD-D--------------MTIKLWDWENEWACE  133 (794)
T ss_pred             CCceEEEEecccceeeEEeec-----cccceeeeeecCCCC-eEEecCC-c--------------cEEEEeeccCceeee
Confidence            344688888877653 22221     123677899999876 4444222 1              122444444321111


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      +.+.++-...-.++|.|....-+++.+-+.+|.+|.+-.
T Consensus       134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence            223334445567899986666799999999999998754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=95.55  E-value=0.53  Score=46.86  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=93.3

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.+.+++|.++.+.++..+|+|..|.-...+-..+.              ...+.+  ......+++|+.++..||-+..
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t--------------~t~lHW--H~~~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET--------------CTLLHW--HHDEVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEecccccccccc--------------ceEEEe--cccccceeEEecCCceEeeccc
Confidence            457889999997778888899999975441100000              000111  1234678999996666766654


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ..-+.++..++++ +.+.++..    ..+-+++++||+. +|..-..                 +..|..+...+.+.+.
T Consensus       272 E~VLv~Wq~~T~~-kqfLPRLg----s~I~~i~vS~ds~-~~sl~~~-----------------DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  272 EGVLVLWQLETGK-KQFLPRLG----SPILHIVVSPDSD-LYSLVLE-----------------DNQIHLIKASDLEIKS  328 (792)
T ss_pred             ceEEEEEeecCCC-cccccccC----CeeEEEEEcCCCC-eEEEEec-----------------CceEEEEeccchhhhh
Confidence            4447788888877 44444433    2456789999999 7665332                 2234444333222221


Q ss_pred             EeCCC------------CCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          196 LLGNL------------SFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       196 ~~~~~------------~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...+.            ..+.+++++|--+ ..+.+...++|.-||+..+
T Consensus       329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             hccCccCCCccccccccccceeEEEcCCCC-ceeecCCCceEEEEecccc
Confidence            11111            2346788888444 4555567788999998654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.50  E-value=2.7  Score=41.12  Aligned_cols=169  Identities=14%  Similarity=0.096  Sum_probs=87.4

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------CC
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------YF  117 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------~~  117 (359)
                      +++ +|+++.++.|+.+|..+++...-......       .     ........|   .+.  ++.++++..      .+
T Consensus       120 ~~~-v~v~t~dg~l~ALDa~TGk~~W~~~~~~~-------~-----~~~~~tssP---~v~--~g~Vivg~~~~~~~~~G  181 (527)
T TIGR03075       120 DGK-VFFGTLDARLVALDAKTGKVVWSKKNGDY-------K-----AGYTITAAP---LVV--KGKVITGISGGEFGVRG  181 (527)
T ss_pred             CCE-EEEEcCCCEEEEEECCCCCEEeecccccc-------c-----ccccccCCc---EEE--CCEEEEeecccccCCCc
Confidence            355 88888889999999998865432111000       0     000011112   122  667888753      23


Q ss_pred             cEEEEeCCCCeEEEEeecCCCc--------------c-------------cccc-ceEEEeCCCCEEEEEeCCCc-cccc
Q 018242          118 GLLKVGPEGGLATAVATQSEGI--------------P-------------FRFC-NSLDIDQSTGIIYFTDSSSQ-FQRR  168 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~--------------~-------------~~~~-~~l~~d~~g~~l~v~d~~~~-~~~~  168 (359)
                      .|+.+|.++|+..-.....+..              +             ...+ ..+++|++-+.+|+...... |...
T Consensus       182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~  261 (527)
T TIGR03075       182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH  261 (527)
T ss_pred             EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence            4888899888754322111100              0             0011 23588887666888853210 1110


Q ss_pred             cceeeeeecCCCceEEEEeCCCCcEEEEeCC-------C---CCCceEEEccCCC--EEEEEecCCCEEEEEEcCCC
Q 018242          169 NHISVILSGDKTGRLMKYDPATKQVTVLLGN-------L---SFPNGVALSEDGN--YILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       169 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~---~~p~gia~~~d~~--~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...   ...-....|+.+|++||+++...+.       +   ..|.-+.+..+|+  -+++....++.++++|....
T Consensus       262 ~r~---gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       262 LRP---GDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             CCC---CCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence            000   0011234799999999998865322       1   1222222334555  35666667777777776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.43  Score=43.57  Aligned_cols=157  Identities=15%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC---eEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG---DLY  111 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g---~l~  111 (359)
                      .-+++.|++||+ +.++........|+.+++....-.          .|.+        ..-....+.|.. ++   .|+
T Consensus       188 eV~DL~FS~dgk-~lasig~d~~~VW~~~~g~~~a~~----------t~~~--------k~~~~~~cRF~~-d~~~~~l~  247 (398)
T KOG0771|consen  188 EVKDLDFSPDGK-FLASIGADSARVWSVNTGAALARK----------TPFS--------KDEMFSSCRFSV-DNAQETLR  247 (398)
T ss_pred             ccccceeCCCCc-EEEEecCCceEEEEeccCchhhhc----------CCcc--------cchhhhhceecc-cCCCceEE
Confidence            445999999998 444443347788888776211000          0000        000112344554 33   677


Q ss_pred             EEeCC---CcEEEEeCC--CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          112 IADAY---FGLLKVGPE--GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       112 v~~~~---~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +++..   .+|..++..  .+. ..+.....-..+..+..++++++|+++-++                  +..|.|..+
T Consensus       248 laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlG------------------T~dGsVai~  308 (398)
T KOG0771|consen  248 LAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALG------------------TMDGSVAIY  308 (398)
T ss_pred             EEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCCcEEEEe------------------ccCCcEEEE
Confidence            76543   234443332  121 011110011134477889999999944444                  446778888


Q ss_pred             eCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          187 DPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       187 d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      +..+-+...+.  .+.....+++|+||.+.+-- -+.+++..+..+.
T Consensus       309 ~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l~  354 (398)
T KOG0771|consen  309 DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKLA  354 (398)
T ss_pred             EeceeeeeEeehhhheeeeeeEEEcCCcCcccc-cccCCceeEEEEe
Confidence            87643332222  22345789999999874333 3334455554443

>PHA03098 kelch-like protein; Provisional

Probab=95.41  E-value=2.4  Score=41.65  Aligned_cols=139  Identities=14%  Similarity=0.153  Sum_probs=71.4

Q ss_pred             EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCeE
Q 018242           56 RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGLA  129 (359)
Q Consensus        56 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~~  129 (359)
                      .++.||+.+++|...+..+                  . ...-++++..  ++.||+....      +.+.+||+.++++
T Consensus       312 ~v~~yd~~~~~W~~~~~~~------------------~-~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELI------------------Y-PRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             cEEEEeCCCCeeeECCCCC------------------c-ccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            6889999998887653111                  0 0111233333  6788886432      2378899998887


Q ss_pred             EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc-e-EE
Q 018242          130 TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN-G-VA  207 (359)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~-g-ia  207 (359)
                      +.......  +. .-.. +..-+|+ +|+.-....           .......+.+||+.+++...... .+.+. + -+
T Consensus       371 ~~~~~lp~--~r-~~~~-~~~~~~~-iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~  433 (534)
T PHA03098        371 REEPPLIF--PR-YNPC-VVNVNNL-IYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSP-LPISHYGGCA  433 (534)
T ss_pred             eeCCCcCc--CC-ccce-EEEECCE-EEEECCcCC-----------CCcccceEEEEeCCCCeeeecCC-CCccccCceE
Confidence            65432111  11 1112 2334566 998721100           00112468999998877655432 22121 1 12


Q ss_pred             EccCCCEEEEEecCC--------CEEEEEEcCCC
Q 018242          208 LSEDGNYILLAETTS--------CRILRYWLKTS  233 (359)
Q Consensus       208 ~~~d~~~l~v~~~~~--------~~i~~~~~~~~  233 (359)
                      ...++ .+|+.+-.+        ..+++||...+
T Consensus       434 ~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        434 IYHDG-KIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             EEECC-EEEEECCccCCCCCcccceEEEecCCCC
Confidence            22344 477775321        23788886543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=95.41  E-value=0.3  Score=44.84  Aligned_cols=163  Identities=13%  Similarity=0.079  Sum_probs=93.7

Q ss_pred             CceEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           36 PESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        36 p~~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      -.++++.+.  |. +..+..++.|..||.+......         .+..|-.    .+........-+++.+....+|.+
T Consensus       180 g~glsWn~~~~g~-Lls~~~d~~i~lwdi~~~~~~~---------~~~~p~~----~~~~h~~~VeDV~~h~~h~~lF~s  245 (422)
T KOG0264|consen  180 GYGLSWNRQQEGT-LLSGSDDHTICLWDINAESKED---------KVVDPKT----IFSGHEDVVEDVAWHPLHEDLFGS  245 (422)
T ss_pred             cccccccccccee-EeeccCCCcEEEEeccccccCC---------ccccceE----EeecCCcceehhhccccchhhhee
Confidence            345666653  55 7777888999999987642110         0011100    111122223345666656777766


Q ss_pred             eCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ...+ .+...|..+++-+. .. ........++.+++.|-+..+..+                 ++..+.|..+|+..-.
T Consensus       246 v~dd~~L~iwD~R~~~~~~-~~-~~~ah~~~vn~~~fnp~~~~ilAT-----------------~S~D~tV~LwDlRnL~  306 (422)
T KOG0264|consen  246 VGDDGKLMIWDTRSNTSKP-SH-SVKAHSAEVNCVAFNPFNEFILAT-----------------GSADKTVALWDLRNLN  306 (422)
T ss_pred             ecCCCeEEEEEcCCCCCCC-cc-cccccCCceeEEEeCCCCCceEEe-----------------ccCCCcEEEeechhcc
Confidence            4433 47777877431111 00 011112356788999887734444                 2335689999986422


Q ss_pred             EE--EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          193 VT--VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       193 ~~--~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      ..  .+...-.....+.++|+...++.+...++++.+||+.
T Consensus       307 ~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  307 KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            21  1222233456788999988899998899999999985

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.72  Score=43.93  Aligned_cols=155  Identities=17%  Similarity=0.077  Sum_probs=93.5

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      -++.+.+||+.+..+..++.+..||..+.+...                    .+.........++++|-...|.+...+
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--------------------~~~~H~aAVKA~awcP~q~~lLAsGGG  364 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--------------------TFTEHTAAVKALAWCPWQSGLLATGGG  364 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCCccccE--------------------EEeccceeeeEeeeCCCccCceEEcCC
Confidence            378899999977778888999999985432111                    223334556678888866666654322


Q ss_pred             --C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          117 --F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       117 --~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                        + .|..+|..+++......     ....+..|++.+..+-+..+ .+..             ...-.||+|..- ...
T Consensus       365 s~D~~i~fwn~~~g~~i~~vd-----tgsQVcsL~Wsk~~kEi~st-hG~s-------------~n~i~lw~~ps~-~~~  424 (484)
T KOG0305|consen  365 SADRCIKFWNTNTGARIDSVD-----TGSQVCSLIWSKKYKELLST-HGYS-------------ENQITLWKYPSM-KLV  424 (484)
T ss_pred             CcccEEEEEEcCCCcEecccc-----cCCceeeEEEcCCCCEEEEe-cCCC-------------CCcEEEEecccc-cee
Confidence              2 37777888776432221     12467789999988734444 3211             112246655432 222


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ..+..+....-.++++|||..+ ++...+.+|..|++-+
T Consensus       425 ~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  425 AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLFD  462 (484)
T ss_pred             eeecCCcceeEEEEECCCCCEE-EEecccCcEEeccccC
Confidence            2333444445678999999864 4455667888887643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=95.29  E-value=0.48  Score=45.20  Aligned_cols=162  Identities=12%  Similarity=0.146  Sum_probs=89.2

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..+.+.+-..++.+++.+|.+-.||+.+.+.........+..  ..|.       ......+..+.|+.++=++-|++..
T Consensus       179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~--s~pg-------~~~~~svTal~F~d~gL~~aVGts~  249 (703)
T KOG2321|consen  179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN--SHPG-------GDAAPSVTALKFRDDGLHVAVGTST  249 (703)
T ss_pred             eeeeecCccceEEecccCceEEEecchhhhhheeeecccccC--CCcc-------ccccCcceEEEecCCceeEEeeccC
Confidence            355566666667788888999999998754322211111100  0011       1112236778888744456667766


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeC--CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ--STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~--~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      +.++.||+.+.+.-.+.......++.   .+.+-+  +++.++-.|.                   ..+-.||..+|+..
T Consensus       250 G~v~iyDLRa~~pl~~kdh~~e~pi~---~l~~~~~~~q~~v~S~Dk-------------------~~~kiWd~~~Gk~~  307 (703)
T KOG2321|consen  250 GSVLIYDLRASKPLLVKDHGYELPIK---KLDWQDTDQQNKVVSMDK-------------------RILKIWDECTGKPM  307 (703)
T ss_pred             CcEEEEEcccCCceeecccCCcccee---eecccccCCCceEEecch-------------------HHhhhcccccCCce
Confidence            67999999876643333322222322   233322  2331433321                   12344777777665


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      .........+.+|+-|++. ++++...+..+..|-+
T Consensus       308 asiEpt~~lND~C~~p~sG-m~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  308 ASIEPTSDLNDFCFVPGSG-MFFTANESSKMHTYYI  342 (703)
T ss_pred             eeccccCCcCceeeecCCc-eEEEecCCCcceeEEc
Confidence            5544445568899999887 5555556666666654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=95.27  E-value=1.6  Score=39.59  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=76.6

Q ss_pred             CcceEEEEecC-CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           96 GRPLGLCFNKT-NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        96 ~~p~gi~~~~~-~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ..-+||.++|. .|.|.-++-.++|+...+.++.+..=..++.+ ....+.+|.++|..+.++.+               
T Consensus       212 ~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaS---------------  275 (440)
T KOG0302|consen  212 GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFAS---------------  275 (440)
T ss_pred             ccceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEe---------------
Confidence            44567887762 46676666566788888888776531111112 23467889999876646666               


Q ss_pred             eecCCCceEEEEeCCCC---cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242          175 LSGDKTGRLMKYDPATK---QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK  234 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~---~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~  234 (359)
                        .+..+.|..+|...+   ..........-.|.|.++.+-. ++.++.+++.+..||+..-+
T Consensus       276 --cS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  276 --CSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             --eecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc
Confidence              244567777887654   1212222233467888876655 88888899999999986443

>PHA02790 Kelch-like protein; Provisional

Probab=95.24  E-value=1.3  Score=42.76  Aligned_cols=140  Identities=12%  Similarity=0.097  Sum_probs=73.9

Q ss_pred             cCCCeeEEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC----
Q 018242           43 ALGEGPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY----  116 (359)
Q Consensus        43 ~~G~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~----  116 (359)
                      -+|.++.++..  ...+.+||+.+++|...+..                  ... ..-.+.+..  +|+||+....    
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l------------------~~~-r~~~~~~~~--~g~IYviGG~~~~~  375 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL------------------LKP-RCNPAVASI--NNVIYVIGGHSETD  375 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCC------------------CCC-CcccEEEEE--CCEEEEecCcCCCC
Confidence            35663334432  14577888888877754311                  100 111223332  7899986332    


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      ..+.+||+++++++......  .+...  ..++.-+|+ ||+.                    .|.+.+||+++++...+
T Consensus       376 ~~ve~ydp~~~~W~~~~~m~--~~r~~--~~~~~~~~~-IYv~--------------------GG~~e~ydp~~~~W~~~  430 (480)
T PHA02790        376 TTTEYLLPNHDQWQFGPSTY--YPHYK--SCALVFGRR-LFLV--------------------GRNAEFYCESSNTWTLI  430 (480)
T ss_pred             ccEEEEeCCCCEEEeCCCCC--Ccccc--ceEEEECCE-EEEE--------------------CCceEEecCCCCcEeEc
Confidence            23678999998887643211  11111  223334666 9998                    23467899988877654


Q ss_pred             eCCCCCC---ceEEEccCCCEEEEEecCC-----CEEEEEEcC
Q 018242          197 LGNLSFP---NGVALSEDGNYILLAETTS-----CRILRYWLK  231 (359)
Q Consensus       197 ~~~~~~p---~gia~~~d~~~l~v~~~~~-----~~i~~~~~~  231 (359)
                      . ....|   .+++.- +++ +|+.+-.+     ..+.+||..
T Consensus       431 ~-~m~~~r~~~~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        431 D-DPIYPRDNPELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             C-CCCCCccccEEEEE-CCE-EEEECCcCCCcccceEEEEECC
Confidence            3 22222   234332 444 78775422     345555543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=4  Score=41.40  Aligned_cols=68  Identities=7%  Similarity=0.029  Sum_probs=38.9

Q ss_pred             CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          200 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       200 ~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ..+.|-+||.|--- |+|++.++..|..|.+...+.=....-....+-..++.+++..++.++......
T Consensus       206 DRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS  273 (1202)
T ss_pred             ccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence            34556677876443 899998888877777643321111110011122345777887777777666554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=95.18  E-value=1.8  Score=37.06  Aligned_cols=159  Identities=14%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEE-eCCCCEEEEEeCCCccccccceeeeee
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI-DQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      .+.|.++|+.+.++.+.....++-+|.++|+++....-.    -..++.++- ..++. ++-+                 
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~q-ilsG-----------------  174 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQ-ILSG-----------------  174 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcc-eeec-----------------
Confidence            357889988888888864445999999999987543211    124445544 34455 4333                 


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCCCCCCc---------eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGNLSFPN---------GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF  247 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~---------gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  247 (359)
                       ..+|.+..||.++++..........|+         ..|+..+..+|...  .+..+..|.+.....   ......++.
T Consensus       175 -~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG--gGp~lslwhLrsse~---t~vfpipa~  248 (325)
T KOG0649|consen  175 -AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG--GGPKLSLWHLRSSES---TCVFPIPAR  248 (325)
T ss_pred             -CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec--CCCceeEEeccCCCc---eEEEecccc
Confidence             456788899988876554443332222         23555555544333  445677777654321   122233443


Q ss_pred             CCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccc
Q 018242          248 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI  291 (359)
Q Consensus       248 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  291 (359)
                      -..+.++.+ .+.++..+..      +..+...|.+...+|...
T Consensus       249 v~~v~F~~d-~vl~~G~g~~------v~~~~l~Gvl~a~ip~~s  285 (325)
T KOG0649|consen  249 VHLVDFVDD-CVLIGGEGNH------VQSYTLNGVLQANIPVES  285 (325)
T ss_pred             eeEeeeecc-eEEEeccccc------eeeeeeccEEEEeccCCc
Confidence            445666543 3555443433      566777888888877653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=95.16  E-value=0.95  Score=41.02  Aligned_cols=149  Identities=10%  Similarity=0.114  Sum_probs=84.6

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCC-cceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICG-RPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~~~~~g~l~v~~~  115 (359)
                      .++.+.+.+. +|.+..++.|..||..+++...                      ....+ ....+.+.+ ..+|.++..
T Consensus       264 s~V~w~d~~v-~yS~SwDHTIk~WDletg~~~~----------------------~~~~~ksl~~i~~~~-~~~Ll~~gs  319 (423)
T KOG0313|consen  264 SSVVWSDATV-IYSVSWDHTIKVWDLETGGLKS----------------------TLTTNKSLNCISYSP-LSKLLASGS  319 (423)
T ss_pred             eeEEEcCCCc-eEeecccceEEEEEeeccccee----------------------eeecCcceeEeeccc-ccceeeecC
Confidence            3666766555 9999999999999998873221                      11111 234667777 666766644


Q ss_pred             CC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          116 YF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       116 ~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      .. -|..+||.++.-.......-+ ..+.+.++.+.|...+++++-                 +..+.+..+|..+-...
T Consensus       320 sdr~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~-----------------S~D~t~klWDvRS~k~p  381 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSG-----------------SYDNTVKLWDVRSTKAP  381 (423)
T ss_pred             CCCceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEE-----------------ecCCeEEEEEeccCCCc
Confidence            44 477789987643222111111 224788899999888777763                 33566777776543211


Q ss_pred             --EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          195 --VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       195 --~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                        .+..+....-.+.+. ++ .+++++..++.|..+.
T Consensus       382 lydI~~h~DKvl~vdW~-~~-~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  382 LYDIAGHNDKVLSVDWN-EG-GLIVSGGADNKLRIFK  416 (423)
T ss_pred             ceeeccCCceEEEEecc-CC-ceEEeccCcceEEEec
Confidence              122221111122222 22 2666666666776654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=95.13  E-value=1.8  Score=43.36  Aligned_cols=153  Identities=15%  Similarity=0.071  Sum_probs=88.5

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-Ee
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-AD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~~  114 (359)
                      |..|...+.|...++..+ ..++.|+...........            +   ....+. ......++++ .++..+ ++
T Consensus       163 ~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~------------~---~~~~Ht-f~~t~~~~sp-n~~~~Aa~d  224 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSR------------D---ITVHHT-FNITCVALSP-NERYLAAGD  224 (792)
T ss_pred             CccEEEcCCceEEEEEEe-eeEEEEEecccceeeccc------------h---hhhhhc-ccceeEEecc-ccceEEEec
Confidence            889999999984455555 567777765532111100            0   011111 1134566777 544443 34


Q ss_pred             CCCcEEEEe-CC--CCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          115 AYFGLLKVG-PE--GGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       115 ~~~~i~~~~-~~--~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      ..++|..+. ..  ....  +.+.-     ....++.++++.+|.+||-+                  +..+-+.+|..+
T Consensus       225 ~dGrI~vw~d~~~~~~~~t~t~lHW-----H~~~V~~L~fS~~G~~LlSG------------------G~E~VLv~Wq~~  281 (792)
T KOG1963|consen  225 SDGRILVWRDFGSSDDSETCTLLHW-----HHDEVNSLSFSSDGAYLLSG------------------GREGVLVLWQLE  281 (792)
T ss_pred             cCCcEEEEeccccccccccceEEEe-----cccccceeEEecCCceEeec------------------ccceEEEEEeec
Confidence            444455442 22  1111  11111     12357789999999855544                  445556678887


Q ss_pred             CCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          190 TKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       190 ~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      +++ +.+.+.+..| .++.++||+. +|..-..++.|..+...
T Consensus       282 T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  282 TGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             CCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence            776 5555555544 6899999998 67766778899888763

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=95.01  E-value=0.032  Score=29.25  Aligned_cols=16  Identities=25%  Similarity=0.648  Sum_probs=12.9

Q ss_pred             CceEECCCCCEEEEEe
Q 018242          249 DNIKRSPRGGFWVGIH  264 (359)
Q Consensus       249 ~~i~~d~~G~lwv~~~  264 (359)
                      ..|+.|++|+||+++.
T Consensus         8 ~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    8 YSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEE-TTSCEEEEET
T ss_pred             EEEEEcCCcCEEEEeC
Confidence            4588999999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.96  E-value=3.1  Score=38.67  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++++|++...+.|..+|+++++.........  .....+.-....+|+ +|+++.                  .+.++++
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~-i~~g~~------------------~g~~y~l  126 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG--AVAQLSGPILGSDGK-IYVGSW------------------DGKLYAL  126 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcC--cceeccCceEEeCCe-EEEecc------------------cceEEEE
Confidence            8899998655569999999887532111111  011222333334898 999943                  3479999


Q ss_pred             eCCCCcEEEEeCCCCCC--ceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          187 DPATKQVTVLLGNLSFP--NGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       187 d~~~~~~~~~~~~~~~p--~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      |.++|+..........+  .+-++-.++ .+|+.. .++.++.++.+.
T Consensus       127 d~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s-~~g~~~al~~~t  172 (370)
T COG1520         127 DASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGT-DDGHLYALNADT  172 (370)
T ss_pred             ECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEec-CCCeEEEEEccC
Confidence            99777776543221101  111122244 245543 556777777543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.95  E-value=4.1  Score=39.97  Aligned_cols=203  Identities=11%  Similarity=0.073  Sum_probs=104.6

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-+.+++-|||.-+.++.. .+++.||++.+....                    .+...-.....++++. +|+.|.+
T Consensus        13 hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq--------------------tLKgHKDtVycVAys~-dGkrFAS   70 (1081)
T KOG1538|consen   13 HCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ--------------------PLKGHKDTVYCVAYAK-DGKRFAS   70 (1081)
T ss_pred             cchheeEECCCCceEEEecC-CEEEEEeCCCccccc--------------------ccccccceEEEEEEcc-CCceecc
Confidence            35678999999997777766 589999998763221                    1222223466788888 8888876


Q ss_pred             eCCCc-EEEEeCC-CCe--------EEEEee-cC---------C-------C-------ccccccceEEEeCCCCEEEEE
Q 018242          114 DAYFG-LLKVGPE-GGL--------ATAVAT-QS---------E-------G-------IPFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus       114 ~~~~~-i~~~~~~-~~~--------~~~~~~-~~---------~-------~-------~~~~~~~~l~~d~~g~~l~v~  159 (359)
                      ...+. +..++++ .|.        .+-+.- +.         .       .       .....+++.++..||.++-++
T Consensus        71 G~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG  150 (1081)
T KOG1538|consen   71 GSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALG  150 (1081)
T ss_pred             CCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEe
Confidence            43332 3333332 111        111100 00         0       0       011245566777777733333


Q ss_pred             eCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe--CC--CCCCceEEEccCC-----CEEEEEecCCCEEEEEEc
Q 018242          160 DSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL--GN--LSFPNGVALSEDG-----NYILLAETTSCRILRYWL  230 (359)
Q Consensus       160 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~--~~~p~gia~~~d~-----~~l~v~~~~~~~i~~~~~  230 (359)
                                        ...|.|-.-+.. ++.....  ++  .....+|+++|..     .++-|.+ .+.++.-|.+
T Consensus       151 ------------------~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~L  210 (1081)
T KOG1538|consen  151 ------------------MFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQL  210 (1081)
T ss_pred             ------------------ccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEe
Confidence                              224555555543 3333222  11  2334688888743     2344443 3345555555


Q ss_pred             CCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCCccceeeecC
Q 018242          231 KTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKL  287 (359)
Q Consensus       231 ~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~  287 (359)
                      ++...++.+.   +.--|..+..=++|. +.++.....      +..|+++|-.+.++
T Consensus       211 sG~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~------L~~fTR~GvrLGTv  259 (1081)
T KOG1538|consen  211 SGKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQ------LSLFTRDGVRLGTV  259 (1081)
T ss_pred             cceeeccccc---CCCCchhheeccCCcEEEEccCCCc------eEEEeecCeEEeec
Confidence            4432221111   222355555556775 555554443      66777777776654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.24  Score=50.66  Aligned_cols=215  Identities=20%  Similarity=0.214  Sum_probs=109.9

Q ss_pred             eEEEccCCCe----eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           38 SLAFDALGEG----PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        38 ~i~~~~~G~~----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .+++.+.|..    +..+..+|.|..||+..- ..             +.+.+-+.......+...|+.|.+..+++..+
T Consensus        69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-~~-------------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS  134 (1049)
T KOG0307|consen   69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-IA-------------NASEEVLATKSKHTGPVLGLDFNPFQGNLLAS  134 (1049)
T ss_pred             eeeecccCCCccceeeccccCCceEEecchhh-cc-------------CcchHHHhhhcccCCceeeeeccccCCceeec
Confidence            4555554432    666788899999998641 00             00000001223344567899999966767766


Q ss_pred             eCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ...+ .|+.+|.+.-+ +.+.. ........+..+.+..+-.+|+.+                 .+..|....||...++
T Consensus       135 Ga~~geI~iWDlnn~~-tP~~~-~~~~~~~eI~~lsWNrkvqhILAS-----------------~s~sg~~~iWDlr~~~  195 (1049)
T KOG0307|consen  135 GADDGEILIWDLNKPE-TPFTP-GSQAPPSEIKCLSWNRKVSHILAS-----------------GSPSGRAVIWDLRKKK  195 (1049)
T ss_pred             cCCCCcEEEeccCCcC-CCCCC-CCCCCcccceEeccchhhhHHhhc-----------------cCCCCCceeccccCCC
Confidence            4443 59999987532 12211 011122344455666554445544                 2234567778876432


Q ss_pred             EEE-EeCC--CCCCceEEEccCCCEEEEEecCCC---EEEEEEcCCCCCcceeEeecCCCCCCceEECCCC-CEEEEEec
Q 018242          193 VTV-LLGN--LSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHS  265 (359)
Q Consensus       193 ~~~-~~~~--~~~p~gia~~~d~~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~  265 (359)
                      -.. +...  ...-+++++.|++.+.+++.++++   .|..||+.-.. ...+.+.......-.|.+.+.+ ++.+++..
T Consensus       196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~GilslsWc~~D~~lllSsgk  274 (1049)
T KOG0307|consen  196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILSLSWCPQDPRLLLSSGK  274 (1049)
T ss_pred             cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-CchhhhcccccceeeeccCCCCchhhhcccC
Confidence            111 1111  122468999999877666666654   45667654221 1122221111112234444544 45554444


Q ss_pred             CCCccccccccCC-ccceeeecCCccc
Q 018242          266 RRKGISKLVLSFP-WIGNVLIKLPIDI  291 (359)
Q Consensus       266 ~~~~~~~~~~~~~-~~g~~~~~~~~~~  291 (359)
                      .+.     +.+.+ .+|+++..++...
T Consensus       275 D~~-----ii~wN~~tgEvl~~~p~~~  296 (1049)
T KOG0307|consen  275 DNR-----IICWNPNTGEVLGELPAQG  296 (1049)
T ss_pred             CCC-----eeEecCCCceEeeecCCCC
Confidence            333     44443 4678888777643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.88  E-value=3.1  Score=41.24  Aligned_cols=181  Identities=12%  Similarity=0.004  Sum_probs=100.5

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-eC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~  115 (359)
                      .++...++..++.++..+|.|..|+...... .+                   .+.....+..-+.||. .|..+++ ..
T Consensus        69 t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-~~-------------------tfngHK~AVt~l~fd~-~G~rlaSGsk  127 (888)
T KOG0306|consen   69 TCLRSSDDILLLAVGYADGSVQIFSLESEEI-LI-------------------TFNGHKAAVTTLKFDK-IGTRLASGSK  127 (888)
T ss_pred             EEeeccCCcceEEEEecCceEEeeccCCCce-ee-------------------eecccccceEEEEEcc-cCceEeecCC
Confidence            3555556676678999999999999875411 10                   1222233456778888 4555554 43


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ...|..+|.-+..-..... ..   ...+.+.-+..+.+ +.|+.                 +.++-+-.||.++..+..
T Consensus       128 Dt~IIvwDlV~E~Gl~rL~-GH---kd~iT~~~F~~~~~-~lvS~-----------------sKDs~iK~WdL~tqhCf~  185 (888)
T KOG0306|consen  128 DTDIIVWDLVGEEGLFRLR-GH---KDSITQALFLNGDS-FLVSV-----------------SKDSMIKFWDLETQHCFE  185 (888)
T ss_pred             CccEEEEEeccceeeEEee-cc---hHHHhHHhccCCCe-EEEEe-----------------ccCceEEEEecccceeee
Confidence            4458888875433221111 11   11222333333444 66663                 234567788888766543


Q ss_pred             E-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC--CCC-C-------cceeEeec-CCCCCCceEECCCCCEEEEE
Q 018242          196 L-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TSK-A-------GTIEIVAQ-LPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       196 ~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~--~~~-~-------~~~~~~~~-~~~~p~~i~~d~~G~lwv~~  263 (359)
                      . ...-....++++.+  + +.++...+..+.+|++.  .+. .       .....+.. ..+.+.+++.|.++++.+..
T Consensus       186 Thvd~r~Eiw~l~~~~--~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~  262 (888)
T KOG0306|consen  186 THVDHRGEIWALVLDE--K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ  262 (888)
T ss_pred             EEecccceEEEEEEec--c-eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEe
Confidence            2 23334467888876  3 56666666778888873  111 1       11112222 23457778888888855544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=94.75  E-value=0.81  Score=41.46  Aligned_cols=157  Identities=12%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             ceEEEcc--CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           37 ESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        37 ~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .++.++|  .|+ +..+.-.+.|+.|.+.++.|..=..                 .+.......-+|..+|....++.+-
T Consensus       215 y~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~-----------------Pf~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  215 YGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQR-----------------PFTGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             eeeecccccccc-cccCccccceEeeeeccCceeecCc-----------------cccccccchhhhccCCccCceEEee
Confidence            4666666  466 5555555789999998887764211                 1111112244677887677777764


Q ss_pred             CCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .-+ .|..+|...+..+.-...  ......+|-|.+..+-. +.++                 +...|.+-.+|...-+.
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~--kAh~sDVNVISWnr~~~-lLas-----------------G~DdGt~~iwDLR~~~~  336 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVST--KAHNSDVNVISWNRREP-LLAS-----------------GGDDGTLSIWDLRQFKS  336 (440)
T ss_pred             ecCceEEEEEecCCCccceeEe--eccCCceeeEEccCCcc-eeee-----------------cCCCceEEEEEhhhccC
Confidence            433 477778776632221111  11112455566655544 3333                 33456666677653222


Q ss_pred             E----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          194 T----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       194 ~----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      .    .+..+......|.+.|.....+.+...+++|..||+.
T Consensus       337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            1    2222333457889998776677777888999999985

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.70  E-value=4.7  Score=39.50  Aligned_cols=171  Identities=14%  Similarity=0.101  Sum_probs=97.7

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      +|. +..+..+..|..|+..++....-                   .+....+...++++...++.++.+.....+..+|
T Consensus       218 ~~~-~~~~s~~~tl~~~~~~~~~~i~~-------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  218 DGF-FKSGSDDSTLHLWDLNNGYLILT-------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD  277 (537)
T ss_pred             cCe-EEecCCCceeEEeecccceEEEe-------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence            455 77788888999999887633221                   1344445678898887344444455455688889


Q ss_pred             CCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC-CCCC
Q 018242          124 PEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG-NLSF  202 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~  202 (359)
                      ..+|+-......       ..+.+.....+..+.++                 ++....|.+|+.+++....+.. ....
T Consensus       278 ~~sg~C~~~l~g-------h~stv~~~~~~~~~~~s-----------------gs~D~tVkVW~v~n~~~l~l~~~h~~~  333 (537)
T KOG0274|consen  278 CSTGECTHSLQG-------HTSSVRCLTIDPFLLVS-----------------GSRDNTVKVWDVTNGACLNLLRGHTGP  333 (537)
T ss_pred             cCCCcEEEEecC-------CCceEEEEEccCceEee-----------------ccCCceEEEEeccCcceEEEecccccc
Confidence            888876554321       11122222222212222                 2345567777777666655544 3444


Q ss_pred             CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---CCCceEECCCCCEEEEEecC
Q 018242          203 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~lwv~~~~~  266 (359)
                      .+.+.++  +. ++++.+.++.|.+|++...     +.+..+.+   ....+.++....++-+..+.
T Consensus       334 V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~-----~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~  392 (537)
T KOG0274|consen  334 VNCVQLD--EP-LLVSGSYDGTVKVWDPRTG-----KCLKSLSGHTGRVYSLIVDSENRLLSGSLDT  392 (537)
T ss_pred             EEEEEec--CC-EEEEEecCceEEEEEhhhc-----eeeeeecCCcceEEEEEecCcceEEeeeecc
Confidence            5666665  33 7788888889999997532     22222222   23446666654455566553

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.68  E-value=2.6  Score=36.51  Aligned_cols=151  Identities=15%  Similarity=0.020  Sum_probs=81.3

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      |--+..|. ..++|++...+.+...|+.++...+..+.                     +.+.-+-+.-- ++.+.++-.
T Consensus        15 pLVV~~ds-kT~v~igSHs~~~~avd~~sG~~~We~il---------------------g~RiE~sa~vv-gdfVV~GCy   71 (354)
T KOG4649|consen   15 PLVVCNDS-KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---------------------GVRIECSAIVV-GDFVVLGCY   71 (354)
T ss_pred             cEEEecCC-ceEEEEecCCceEEEecCCCCcEEeehhh---------------------CceeeeeeEEE-CCEEEEEEc
Confidence            33333333 34577888888899999998865543211                     11111111112 556777777


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+++|.++.++|..-.........   . ..-..|+++.-+|.+                  +-++..|.+|+.+.....
T Consensus        72 ~g~lYfl~~~tGs~~w~f~~~~~v---k-~~a~~d~~~glIycg------------------shd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   72 SGGLYFLCVKTGSQIWNFVILETV---K-VRAQCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             cCcEEEEEecchhheeeeeehhhh---c-cceEEcCCCceEEEe------------------cCCCcEEEecccccceEE
Confidence            778999999988421111101100   1 123667777757777                  234567777776543322


Q ss_pred             EeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          196 LLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       196 ~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      -.. +...-.+-++++-...||++.+. +.+.+...++
T Consensus       130 kskcgG~~f~sP~i~~g~~sly~a~t~-G~vlavt~~~  166 (354)
T KOG4649|consen  130 KSKCGGGTFVSPVIAPGDGSLYAAITA-GAVLAVTKNP  166 (354)
T ss_pred             ecccCCceeccceecCCCceEEEEecc-ceEEEEccCC
Confidence            111 11111234566633348988754 5777766543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=94.63  E-value=3.3  Score=37.45  Aligned_cols=153  Identities=9%  Similarity=0.047  Sum_probs=92.9

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      .+.+.|+--+.++++.++.|..||..+++...                    .+.........|.|+. .|.+.+....+
T Consensus       113 ~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~--------------------~LrGHt~sv~di~~~a-~Gk~l~tcSsD  171 (406)
T KOG0295|consen  113 RVIFHPSEALVVSASEDATIKVFDTETGELER--------------------SLRGHTDSVFDISFDA-SGKYLATCSSD  171 (406)
T ss_pred             eeeeccCceEEEEecCCceEEEEEccchhhhh--------------------hhhccccceeEEEEec-CccEEEecCCc
Confidence            44556766656677789999999999885421                    2333334467888998 66666654433


Q ss_pred             -cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242          118 -GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-  195 (359)
Q Consensus       118 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-  195 (359)
                       .+..+|.++- .+.+.. ..+ ....+..+.+-|.|.  ||..                ..+...|..++-+++.... 
T Consensus       172 l~~~LWd~~~~-~~c~ks-~~g-h~h~vS~V~f~P~gd--~ilS----------------~srD~tik~We~~tg~cv~t  230 (406)
T KOG0295|consen  172 LSAKLWDFDTF-FRCIKS-LIG-HEHGVSSVFFLPLGD--HILS----------------CSRDNTIKAWECDTGYCVKT  230 (406)
T ss_pred             cchhheeHHHH-HHHHHH-hcC-cccceeeEEEEecCC--eeee----------------cccccceeEEecccceeEEe
Confidence             2455555431 110000 001 223566788888887  3331                2344567778877775543 


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +........-+....||. ++.+.+.+++|..|-....
T Consensus       231 ~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  231 FPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATK  267 (406)
T ss_pred             ccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccc
Confidence            333334456778888885 8888888999999976543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.55  E-value=4  Score=38.03  Aligned_cols=203  Identities=12%  Similarity=0.058  Sum_probs=101.9

Q ss_pred             eCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc--ccCCcceEEEEecCC
Q 018242           30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE--HICGRPLGLCFNKTN  107 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~gi~~~~~~  107 (359)
                      -+-.-.+-++++.+++.+.|.+..++.|.+|+..++.-..+-.+.+...-..+-+.    ...  ........+++++ +
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~----k~~r~~h~keil~~avS~-D  213 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPL----KESRKGHVKEILTLAVSS-D  213 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCC----CcccccccceeEEEEEcC-C
Confidence            33345677999999998899999999999999877643311111100000000000    011  1122345788999 7


Q ss_pred             CeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          108 GDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       108 g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      |..++....+ -|..++.++.+........    -..+.++++-..-+.+|.+.                  ...+|-.|
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~gh----r~~V~~L~fr~gt~~lys~s------------------~Drsvkvw  271 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGH----RGAVSSLAFRKGTSELYSAS------------------ADRSVKVW  271 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhccccc----ccceeeeeeecCccceeeee------------------cCCceEEE
Confidence            7766654333 4668888877643221111    12345666654433377772                  22345555


Q ss_pred             eCCCCc-EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242          187 DPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       187 d~~~~~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  263 (359)
                      +.+... ++.+.++-....+|....-++ +.-....+.++..|++...   ...+|....+.++.+++=.+-.+..++
T Consensus       272 ~~~~~s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee---sqlifrg~~~sidcv~~In~~HfvsGS  345 (479)
T KOG0299|consen  272 SIDQLSYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE---SQLIFRGGEGSIDCVAFINDEHFVSGS  345 (479)
T ss_pred             ehhHhHHHHHHhCCccceeeechhcccc-eEEeccccceeEEEecccc---ceeeeeCCCCCeeeEEEecccceeecc
Confidence            544221 112222222223332222333 4444445567777876322   223344445567777775444344433

>PHA02790 Kelch-like protein; Provisional

Probab=94.48  E-value=4  Score=39.53  Aligned_cols=133  Identities=13%  Similarity=0.061  Sum_probs=71.4

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC---CcEEEEeCCCCeEEE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY---FGLLKVGPEGGLATA  131 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~---~~i~~~~~~~~~~~~  131 (359)
                      ..+.+||+.+++|...+..+                  . ...-.+++. - ++.||+....   ..+.++++.++++..
T Consensus       287 ~~v~~Ydp~~~~W~~~~~m~------------------~-~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~  345 (480)
T PHA02790        287 NNAIAVNYISNNWIPIPPMN------------------S-PRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVN  345 (480)
T ss_pred             CeEEEEECCCCEEEECCCCC------------------c-hhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence            35789999988777653111                  0 011123332 2 7899987432   247889998887765


Q ss_pred             EeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc--eEEEc
Q 018242          132 VATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN--GVALS  209 (359)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~--gia~~  209 (359)
                      +..-    +.......++.-+|+ ||+.-...              .....+.+|||.+++..... ....|.  .-+..
T Consensus       346 ~~~l----~~~r~~~~~~~~~g~-IYviGG~~--------------~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~~  405 (480)
T PHA02790        346 MPSL----LKPRCNPAVASINNV-IYVIGGHS--------------ETDTTTEYLLPNHDQWQFGP-STYYPHYKSCALV  405 (480)
T ss_pred             CCCC----CCCCcccEEEEECCE-EEEecCcC--------------CCCccEEEEeCCCCEEEeCC-CCCCccccceEEE
Confidence            4321    111112223334677 99972110              01135778999887766542 222221  11222


Q ss_pred             cCCCEEEEEecCCCEEEEEEcCC
Q 018242          210 EDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       210 ~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      -++ .+|+.+   +...+|+...
T Consensus       406 ~~~-~IYv~G---G~~e~ydp~~  424 (480)
T PHA02790        406 FGR-RLFLVG---RNAEFYCESS  424 (480)
T ss_pred             ECC-EEEEEC---CceEEecCCC
Confidence            344 489886   3467787643

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.45  E-value=0.26  Score=29.46  Aligned_cols=42  Identities=17%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             cCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEEC
Q 018242          210 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  254 (359)
Q Consensus       210 ~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  254 (359)
                      ||+++||+++...+.|..+|....   ........+..|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEECCCCCceEEeC
Confidence            578899999999999999987432   121122245568888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.42  E-value=3.3  Score=36.56  Aligned_cols=197  Identities=15%  Similarity=0.151  Sum_probs=108.6

Q ss_pred             CEEEEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           24 GVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        24 ~~~~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ....++.+.-..-..++|+| ...++.+++.++.|..|+.... ....             .      ......+.+..+
T Consensus        18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-------------k------a~~~~~~PvL~v   78 (347)
T KOG0647|consen   18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-------------K------AQQSHDGPVLDV   78 (347)
T ss_pred             cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-------------h------hhhccCCCeEEE
Confidence            34566666666777999999 4554558899999999987653 1110             0      122333446788


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCE-EEEEeCCCccccccceeeeeecCCC
Q 018242          102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI-IYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~-l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +++.++..+|.+...+.+-.+|+.++++..+.....  +   +..+.+-+..++ +.++                 ++++
T Consensus        79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~--p---vkt~~wv~~~~~~cl~T-----------------GSWD  136 (347)
T KOG0647|consen   79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA--P---VKTCHWVPGMNYQCLVT-----------------GSWD  136 (347)
T ss_pred             EEccCCceEEeeccCCceEEEEccCCCeeeeeeccc--c---eeEEEEecCCCcceeEe-----------------cccc
Confidence            898867778888766678899999998877654221  1   122333222221 2233                 2445


Q ss_pred             ceEEEEeCCCCcEEEEeCCCCCCc-eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCce--EECCC
Q 018242          181 GRLMKYDPATKQVTVLLGNLSFPN-GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNI--KRSPR  256 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i--~~d~~  256 (359)
                      -.|-.||+.......   ...-|. -.+.+...- +.+..+.+..|.+|++..+.. .++... .+.-..+.+  +.|.+
T Consensus       137 KTlKfWD~R~~~pv~---t~~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~n~~t-e~k~~~SpLk~Q~R~va~f~d~~  211 (347)
T KOG0647|consen  137 KTLKFWDTRSSNPVA---TLQLPERVYAADVLYP-MAVVATAERHIAVYNLENPPT-EFKRIESPLKWQTRCVACFQDKD  211 (347)
T ss_pred             cceeecccCCCCeee---eeeccceeeehhccCc-eeEEEecCCcEEEEEcCCCcc-hhhhhcCcccceeeEEEEEecCC
Confidence            567778875322211   112232 223333222 556666778899999865421 111111 111123344  44666


Q ss_pred             CCEEEEEecCC
Q 018242          257 GGFWVGIHSRR  267 (359)
Q Consensus       257 G~lwv~~~~~~  267 (359)
                      |. -++...++
T Consensus       212 ~~-alGsiEGr  221 (347)
T KOG0647|consen  212 GF-ALGSIEGR  221 (347)
T ss_pred             ce-Eeeeecce
Confidence            64 55666655

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=94.33  E-value=1.3  Score=39.47  Aligned_cols=140  Identities=11%  Similarity=0.041  Sum_probs=74.0

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      --.++|+|+ +.++..+-++..-|.++-+..+.                     -.-......|....+.-.+..+...+
T Consensus        13 ~c~fSp~g~-yiAs~~~yrlviRd~~tlq~~ql---------------------f~cldki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   13 FCSFSPCGN-YIASLSRYRLVIRDSETLQLHQL---------------------FLCLDKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             ceeECCCCC-eeeeeeeeEEEEeccchhhHHHH---------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence            346889999 66666666777766655422110                     00001122344444222222222233


Q ss_pred             -cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          118 -GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       118 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                       .|..++...-+..--.+  .+  ......+.++|+||++..+.                 ....+|-++...+.+...+
T Consensus        71 ~~vqvwsl~Qpew~ckId--eg--~agls~~~WSPdgrhiL~ts-----------------eF~lriTVWSL~t~~~~~~  129 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYCKID--EG--QAGLSSISWSPDGRHILLTS-----------------EFDLRITVWSLNTQKGYLL  129 (447)
T ss_pred             ceEEEEEeecceeEEEec--cC--CCcceeeeECCCcceEeeee-----------------cceeEEEEEEeccceeEEe
Confidence             36666665443322111  11  12456789999998777662                 2233555566555555444


Q ss_pred             eCCCCCCceEEEccCCCEEEEEec
Q 018242          197 LGNLSFPNGVALSEDGNYILLAET  220 (359)
Q Consensus       197 ~~~~~~p~gia~~~d~~~l~v~~~  220 (359)
                      ........|++|.+||+..-+...
T Consensus       130 ~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen  130 PHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             cccccCceeEEECCCCceeeeeec
Confidence            433344589999999986555543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.86  Score=41.41  Aligned_cols=99  Identities=10%  Similarity=0.005  Sum_probs=62.8

Q ss_pred             eEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           38 SLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        38 ~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ++.|-+.  ...+.+.+..+.+..||+..+ .+.+.                  .+.........+...++.+.+|+++.
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~------------------~fd~~E~~is~~~l~p~gn~Iy~gn~  267 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVA------------------QFDFLENPISSTGLTPSGNFIYTGNT  267 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCccc-Cccee------------------EeccccCcceeeeecCCCcEEEEecc
Confidence            4444444  454667788899999998754 22221                  33333334467778886777888887


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~  159 (359)
                      .+.+..||..++++.-.  ...+ --..+.+|..+|.+. +..+
T Consensus       268 ~g~l~~FD~r~~kl~g~--~~kg-~tGsirsih~hp~~~-~las  307 (412)
T KOG3881|consen  268 KGQLAKFDLRGGKLLGC--GLKG-ITGSIRSIHCHPTHP-VLAS  307 (412)
T ss_pred             cchhheecccCceeecc--ccCC-ccCCcceEEEcCCCc-eEEe
Confidence            77799999988864321  1111 123678899999988 4433

>PHA03098 kelch-like protein; Provisional

Probab=94.15  E-value=4.6  Score=39.64  Aligned_cols=140  Identities=15%  Similarity=0.142  Sum_probs=69.8

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCC
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGG  127 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~  127 (359)
                      ..+.+||+.+++|+..+..+                   .....+..+..  ++++|+....       +.+.+||+.++
T Consensus       358 ~~v~~yd~~~~~W~~~~~lp-------------------~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        358 NTVESWKPGESKWREEPPLI-------------------FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             ceEEEEcCCCCceeeCCCcC-------------------cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            35778899888777543111                   01111223322  7888886431       24889999998


Q ss_pred             eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---
Q 018242          128 LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---  204 (359)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---  204 (359)
                      +++.+... +. +. .-.. ++.-+++ ||+.-.... ..        .......+++||+.+++...+. ....|.   
T Consensus       417 ~W~~~~~~-p~-~r-~~~~-~~~~~~~-iyv~GG~~~-~~--------~~~~~~~v~~yd~~~~~W~~~~-~~~~~r~~~  481 (534)
T PHA03098        417 KWSKGSPL-PI-SH-YGGC-AIYHDGK-IYVIGGISY-ID--------NIKVYNIVESYNPVTNKWTELS-SLNFPRINA  481 (534)
T ss_pred             eeeecCCC-Cc-cc-cCce-EEEECCE-EEEECCccC-CC--------CCcccceEEEecCCCCceeeCC-CCCcccccc
Confidence            88764321 11 11 1112 2333566 888721100 00        0001234899999988776543 222221   


Q ss_pred             eEEEccCCCEEEEEecCC-----CEEEEEEcCC
Q 018242          205 GVALSEDGNYILLAETTS-----CRILRYWLKT  232 (359)
Q Consensus       205 gia~~~d~~~l~v~~~~~-----~~i~~~~~~~  232 (359)
                      +.+. .+++ +|+.+-.+     +.+++||...
T Consensus       482 ~~~~-~~~~-iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        482 SLCI-FNNK-IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             eEEE-ECCE-EEEEcCCcCCcccceeEEEeCCC
Confidence            2222 2443 66665332     4566676543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.12  E-value=5.2  Score=37.60  Aligned_cols=83  Identities=7%  Similarity=-0.105  Sum_probs=39.9

Q ss_pred             CceEEEEeCCCCcE-EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--C---CCCCceE
Q 018242          180 TGRLMKYDPATKQV-TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--P---GFPDNIK  252 (359)
Q Consensus       180 ~g~v~~~d~~~~~~-~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~---~~p~~i~  252 (359)
                      .|.+++-...++.. +.+. .......++.+.+++. ++++. ..+.+++-+-.+ ..-....+.+.  +   ..+.++.
T Consensus       258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~~S~d~G-~~~~~~~f~~~~~~~~~~~l~~v~  334 (398)
T PLN00033        258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLYVSKGTG-LTEEDFDFEEADIKSRGFGILDVG  334 (398)
T ss_pred             CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEEEecCCC-CcccccceeecccCCCCcceEEEE
Confidence            34566644443332 3332 2223346777888876 55554 345565543221 11000122221  1   1234567


Q ss_pred             ECCCCCEEEEEec
Q 018242          253 RSPRGGFWVGIHS  265 (359)
Q Consensus       253 ~d~~G~lwv~~~~  265 (359)
                      +.+++.+|++...
T Consensus       335 ~~~d~~~~a~G~~  347 (398)
T PLN00033        335 YRSKKEAWAAGGS  347 (398)
T ss_pred             EcCCCcEEEEECC
Confidence            7778889987764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.06  E-value=1.2  Score=43.25  Aligned_cols=155  Identities=15%  Similarity=0.082  Sum_probs=84.3

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      +...+-++++..+.|.++..+.-.+-|..||+.+.+.                    +..+.....+..-+.+++ +|+-
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k--------------------imkLrGHTdNVr~ll~~d-DGt~  227 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK--------------------IMKLRGHTDNVRVLLVND-DGTR  227 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccc--------------------eeeeeccccceEEEEEcC-CCCe
Confidence            3344556888888887555566668899999998631                    113333334566788887 6655


Q ss_pred             EEEeCCCc-EEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          111 YIADAYFG-LLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       111 ~v~~~~~~-i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      .++...+| |..+|....+-. .+.-     ....+..+..+++=.++|.+                  ++.+.|++-|.
T Consensus       228 ~ls~sSDgtIrlWdLgqQrCl~T~~v-----H~e~VWaL~~~~sf~~vYsG------------------~rd~~i~~Tdl  284 (735)
T KOG0308|consen  228 LLSASSDGTIRLWDLGQQRCLATYIV-----HKEGVWALQSSPSFTHVYSG------------------GRDGNIYRTDL  284 (735)
T ss_pred             EeecCCCceEEeeeccccceeeeEEe-----ccCceEEEeeCCCcceEEec------------------CCCCcEEeccc
Confidence            55444444 667777543211 1111     11124445555444435554                  55677888776


Q ss_pred             CCC-cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          189 ATK-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       189 ~~~-~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      .+- +...+-..-.....+.+..+.+.. |..+.+..|.+|..
T Consensus       285 ~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  285 RNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKL  326 (735)
T ss_pred             CCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCC
Confidence            542 222222221222344444333334 55567778888864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.96  E-value=4.7  Score=36.57  Aligned_cols=133  Identities=18%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             ceEEEEeCCCCcEEE-EeCCCCCCce-EEEccCCCEEEEE---ecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC
Q 018242          181 GRLMKYDPATKQVTV-LLGNLSFPNG-VALSEDGNYILLA---ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  255 (359)
Q Consensus       181 g~v~~~d~~~~~~~~-~~~~~~~p~g-ia~~~d~~~l~v~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  255 (359)
                      ..||.||.++-++.. +......|.| +|+++....-|++   .+..+.|..||...-  .....+....+-...+++++
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~aH~~~lAalafs~  183 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTINAHKGPLAALAFSP  183 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEEecCCceeEEEECC
Confidence            369999987533321 2222244554 4566554323333   344578999986432  22222221223345699999


Q ss_pred             CCCEEEEEecCCCccccccccCC-ccceeeecCCcc--ceeeeeecccccCcceEEEEECCCCCEEEEEE
Q 018242          256 RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID--IVKIHSSLVKLSGNGGMAMRISEQGNVLEILE  322 (359)
Q Consensus       256 ~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  322 (359)
                      +|.+.++....|..    |.+|. ++|+.+..+--+  ...+.+++|..+.+   .+....+...++.|.
T Consensus       184 ~G~llATASeKGTV----IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  184 DGTLLATASEKGTV----IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLAASSNTETVHIFK  246 (391)
T ss_pred             CCCEEEEeccCceE----EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEEEecCCCeEEEEE
Confidence            99999988887764    55553 677776655332  22344444444332   333333444455543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.93  E-value=5.2  Score=36.94  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             CCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCcccccc-ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242          107 NGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFC-NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR  182 (359)
Q Consensus       107 ~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~  182 (359)
                      +.-+|+.. ..   .|+.++..++..+.+-.   + .. .+ .-+.+|++++.||++-...             ....-.
T Consensus       248 ~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~---G-~~-~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~  308 (353)
T PF00930_consen  248 NEFLWISE-RDGYRHLYLYDLDGGKPRQLTS---G-DW-EVTSILGWDEDNNRIYFTANGD-------------NPGERH  308 (353)
T ss_dssp             SEEEEEEE-TTSSEEEEEEETTSSEEEESS----S-SS--EEEEEEEECTSSEEEEEESSG-------------GTTSBE
T ss_pred             CEEEEEEE-cCCCcEEEEEcccccceecccc---C-ce-eecccceEcCCCCEEEEEecCC-------------CCCceE
Confidence            34466665 43   49999999887654321   1 11 22 2467888888799884431             122347


Q ss_pred             EEEEeCC-CCcEEEEeCCCCCCc-eEEEccCCCEEEEEec
Q 018242          183 LMKYDPA-TKQVTVLLGNLSFPN-GVALSEDGNYILLAET  220 (359)
Q Consensus       183 v~~~d~~-~~~~~~~~~~~~~p~-gia~~~d~~~l~v~~~  220 (359)
                      ||+++.+ ++..+.+. ...... .+.|+|+++++....+
T Consensus       309 lY~v~~~~~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  309 LYRVSLDSGGEPKCLT-CEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEEETTETTEEEESS-TTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             EEEEEeCCCCCeEecc-CCCCCceEEEECCCCCEEEEEEc
Confidence            9999998 77776553 333344 8999999986555443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=93.88  E-value=3.5  Score=37.03  Aligned_cols=188  Identities=10%  Similarity=-0.006  Sum_probs=99.8

Q ss_pred             CeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCeEEEEeCCCcEEEE
Q 018242           46 EGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGDLYIADAYFGLLKV  122 (359)
Q Consensus        46 ~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~l~v~~~~~~i~~~  122 (359)
                      .++.++..+|.|..||+.+++ ...|.                     .......++.|...  -+.++.+...+.|..+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk---------------------~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w   99 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK---------------------GPPATTNGVRFISCDSPHGVISCSSDGTVRLW   99 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec---------------------CCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence            448888999999999999853 22222                     22222346666542  3456666555557788


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE--EEE-eCC
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV--TVL-LGN  199 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--~~~-~~~  199 (359)
                      |.....-..... ....+......+....+++ +.-+....             ..-...|+.||....+.  ..+ ..+
T Consensus       100 D~Rs~~e~a~~~-~~~~~~~~f~~ld~nck~~-ii~~GtE~-------------~~s~A~v~lwDvR~~qq~l~~~~eSH  164 (376)
T KOG1188|consen  100 DIRSQAESARIS-WTQQSGTPFICLDLNCKKN-IIACGTEL-------------TRSDASVVLWDVRSEQQLLRQLNESH  164 (376)
T ss_pred             Eeecchhhhhee-ccCCCCCcceEeeccCcCC-eEEecccc-------------ccCceEEEEEEeccccchhhhhhhhc
Confidence            876543221111 1111111112233334666 66653210             01123577888753221  111 112


Q ss_pred             CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-eeEeecCCCCCCceEECCCC--CEEEEEecCCCc
Q 018242          200 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSPRG--GFWVGIHSRRKG  269 (359)
Q Consensus       200 ~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~G--~lwv~~~~~~~~  269 (359)
                      ..-...+.|.|..-.++++.+.++-+-.||++.+.-.+ .....+......-+.+-.++  +||.-++.....
T Consensus       165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~  237 (376)
T KOG1188|consen  165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFA  237 (376)
T ss_pred             cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCcee
Confidence            22345778888766699999999999999986542111 11111111223446666667  799888776643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=93.79  E-value=4.3  Score=35.54  Aligned_cols=42  Identities=17%  Similarity=0.090  Sum_probs=31.5

Q ss_pred             eeCCCCCCc--eEEEccCCCeeEEecCCCEEEEEEcCCcceEEE
Q 018242           29 QIEGAIGPE--SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHF   70 (359)
Q Consensus        29 ~~~~~~~p~--~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~   70 (359)
                      .+++=..|+  -++++||+.++..+...|.|..+|..+.+...+
T Consensus        37 qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen   37 QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            333334554  899999999888888999999999987644433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=93.70  E-value=0.38  Score=46.44  Aligned_cols=157  Identities=15%  Similarity=0.076  Sum_probs=84.6

Q ss_pred             eEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-EeC
Q 018242           38 SLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-ADA  115 (359)
Q Consensus        38 ~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~~~  115 (359)
                      ++.+|| |..+|.+++.+|.|..|....+....         ..+-|.+    .+.........+.|.|--.++.. +.+
T Consensus       632 Dl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e---------~~~tPe~----~lt~h~eKI~slRfHPLAadvLa~asy  698 (1012)
T KOG1445|consen  632 DLHWDPFDDERLAVATDDGQINLWRLTANGLPE---------NEMTPEK----ILTIHGEKITSLRFHPLAADVLAVASY  698 (1012)
T ss_pred             ecccCCCChHHeeecccCceEEEEEeccCCCCc---------ccCCcce----eeecccceEEEEEecchhhhHhhhhhc
Confidence            344555 33348888888988888776542111         0111211    22222233456667664444433 333


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      ...|..+|..+.+.....   .+ .-..+.+++++|+|+ ...+.                 -..|+|.+|+|.+++...
T Consensus       699 d~Ti~lWDl~~~~~~~~l---~g-HtdqIf~~AWSpdGr-~~AtV-----------------cKDg~~rVy~Prs~e~pv  756 (1012)
T KOG1445|consen  699 DSTIELWDLANAKLYSRL---VG-HTDQIFGIAWSPDGR-RIATV-----------------CKDGTLRVYEPRSREQPV  756 (1012)
T ss_pred             cceeeeeehhhhhhhhee---cc-CcCceeEEEECCCCc-ceeee-----------------ecCceEEEeCCCCCCCcc
Confidence            445777887765532111   11 113567899999999 55542                 246789999998655443


Q ss_pred             EeCCC-CC--CceEEEccCCCEEEEEecCC---CEEEEEE
Q 018242          196 LLGNL-SF--PNGVALSEDGNYILLAETTS---CRILRYW  229 (359)
Q Consensus       196 ~~~~~-~~--p~gia~~~d~~~l~v~~~~~---~~i~~~~  229 (359)
                      ..... ..  ..-|.+.-||+.+++++.+.   .+|..|+
T Consensus       757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~  796 (1012)
T KOG1445|consen  757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD  796 (1012)
T ss_pred             ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence            32211 11  12355556777777766553   2344454

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.60  E-value=4.2  Score=39.87  Aligned_cols=154  Identities=12%  Similarity=0.046  Sum_probs=87.1

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecC-----CC
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKT-----NG  108 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~-----~g  108 (359)
                      +--+-++..||.++..+..+|.|..-|..+.+-..+.          +|         ...+. ..++++.|.     +.
T Consensus       134 R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~----------Rp---------gg~Nspiwsi~~~p~sg~G~~d  194 (1081)
T KOG1538|consen  134 RIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIE----------RP---------GGSNSPIWSICWNPSSGEGRND  194 (1081)
T ss_pred             eEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEe----------CC---------CCCCCCceEEEecCCCCCCccc
Confidence            4457789999998888999999988776654322221          11         11122 367777764     23


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          109 DLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       109 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      .+-|.++...+..+..++....    ...... -.|.-+..=++|.++.++-                  -++.+..|..
T Consensus       195 i~aV~DW~qTLSFy~LsG~~Ig----k~r~L~-FdP~CisYf~NGEy~LiGG------------------sdk~L~~fTR  251 (1081)
T KOG1538|consen  195 ILAVADWGQTLSFYQLSGKQIG----KDRALN-FDPCCISYFTNGEYILLGG------------------SDKQLSLFTR  251 (1081)
T ss_pred             eEEEEeccceeEEEEecceeec----ccccCC-CCchhheeccCCcEEEEcc------------------CCCceEEEee
Confidence            4666777766777776654321    111111 1344555667888676662                  2334555554


Q ss_pred             CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      ++-.+-++..-......++.-|+++ -|+.+-.+++|..|++.
T Consensus       252 ~GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  252 DGVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cCeEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhH
Confidence            4322222211112345667777777 46666677888888753

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.59  E-value=4.9  Score=39.60  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=58.4

Q ss_pred             EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc-
Q 018242           40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-  118 (359)
Q Consensus        40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-  118 (359)
                      ++|..+..+-+++..|.+|.++..+++.....                   .....+.-.-+.+++ ...+.++...+| 
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-------------------~~~~~~~~~~~~vs~-~e~lvAagt~~g~   99 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-------------------NEGATGITCVRSVSS-VEYLVAAGTASGR   99 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhccc-------------------ccCccceEEEEEecc-hhHhhhhhcCCce
Confidence            46677777778888899999998877433221                   000111122344666 555555544444 


Q ss_pred             EEEEeCCCCeEEE--EeecCCCccccccceEEEeCCCCEEEEEeCC
Q 018242          119 LLKVGPEGGLATA--VATQSEGIPFRFCNSLDIDQSTGIIYFTDSS  162 (359)
Q Consensus       119 i~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~  162 (359)
                      |..+....+....  +..+........+..+.|+++|.++|.+|+.
T Consensus       100 V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen  100 VSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             EEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence            5555443322111  1122222123567889999999999999753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=93.59  E-value=3.8  Score=40.52  Aligned_cols=220  Identities=10%  Similarity=0.103  Sum_probs=108.0

Q ss_pred             CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCe
Q 018242           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGD  109 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~  109 (359)
                      .-.+-.+++++|+|.-|..+...|.|..+++..-+...+                    ++....+...+.++..  ...
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~--------------------~eAHesEilcLeyS~p~~~~k  517 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF--------------------MEAHESEILCLEYSFPVLTNK  517 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhh--------------------eecccceeEEEeecCchhhhH
Confidence            345778999999999777777778999999876432221                    2222233344444421  234


Q ss_pred             EEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCC-CEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          110 LYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST-GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       110 l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g-~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      |..+...++ |..||......  +.....+ ....+..+.+...| ++-.++-.                ....-.++..
T Consensus       518 LLASasrdRlIHV~Dv~rny~--l~qtld~-HSssITsvKFa~~gln~~MiscG----------------ADksimFr~~  578 (1080)
T KOG1408|consen  518 LLASASRDRLIHVYDVKRNYD--LVQTLDG-HSSSITSVKFACNGLNRKMISCG----------------ADKSIMFRVN  578 (1080)
T ss_pred             hhhhccCCceEEEEecccccc--hhhhhcc-cccceeEEEEeecCCceEEEecc----------------Cchhhheehh
Confidence            444433333 66777653321  1111111 12244455555444 21233310                0001111111


Q ss_pred             CCCCcEEEEeC---C--CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---CCCCCceEECCCCCE
Q 018242          188 PATKQVTVLLG---N--LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGF  259 (359)
Q Consensus       188 ~~~~~~~~~~~---~--~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l  259 (359)
                      .+.+....+..   .  -..-..++.+|.-+ +.++.-.+..|..|++...+.  .+.|...   .|-+--+..||.| +
T Consensus       579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSg-i  654 (1080)
T KOG1408|consen  579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSG-I  654 (1080)
T ss_pred             ccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccce--eeeecccccCCCceEEEEECCCc-c
Confidence            11111111110   0  01235677888776 445555666799999876533  3445442   2334447789999 5


Q ss_pred             EEEEecCCCccccccccCCc-cceeeecCCccceeeeeec
Q 018242          260 WVGIHSRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSSL  298 (359)
Q Consensus       260 wv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~  298 (359)
                      |+++.-..+.    +.+++. .|+..++.-.+.+.++.+-
T Consensus       655 Y~atScsdkt----l~~~Df~sgEcvA~m~GHsE~VTG~k  690 (1080)
T KOG1408|consen  655 YLATSCSDKT----LCFVDFVSGECVAQMTGHSEAVTGVK  690 (1080)
T ss_pred             EEEEeecCCc----eEEEEeccchhhhhhcCcchheeeee
Confidence            5544433332    455553 6777776655555544433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.56  E-value=2.8  Score=42.73  Aligned_cols=103  Identities=19%  Similarity=0.228  Sum_probs=64.1

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      ....|++-..++|+++|+.-..-+.+.... .-........++.+.+|. |-|+                  +..|.|-.
T Consensus       542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavg------------------s~~G~IRL  602 (794)
T PF08553_consen  542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVG------------------SNKGDIRL  602 (794)
T ss_pred             CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEE------------------eCCCcEEe
Confidence            345778877788999998642211111111 111223456778889998 8887                  34577888


Q ss_pred             EeCCCCcEEEEeCCCCCC-ceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          186 YDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p-~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ||.-+.+.++..+++..| .+|..+.||++++.+  ....|..++.
T Consensus       603 yd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t  646 (794)
T PF08553_consen  603 YDRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT  646 (794)
T ss_pred             ecccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence            886654444555554434 689999999865554  4567777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=93.44  E-value=0.51  Score=45.59  Aligned_cols=148  Identities=13%  Similarity=0.057  Sum_probs=83.3

Q ss_pred             eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCCC
Q 018242           48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPEG  126 (359)
Q Consensus        48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~  126 (359)
                      |.++.++-.|-.||..+.+...                    .+........++++++ +|+...+.-. +.|..|.+..
T Consensus       693 La~asyd~Ti~lWDl~~~~~~~--------------------~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  693 LAVASYDSTIELWDLANAKLYS--------------------RLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             hhhhhccceeeeeehhhhhhhh--------------------eeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCC
Confidence            4556677888888887652111                    2333445577999999 6665554333 4588888877


Q ss_pred             CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe----CCCCC
Q 018242          127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL----GNLSF  202 (359)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~~~~  202 (359)
                      ++- .+... .+.....-..|.+.-||+.+.++-....             + .-.|..||.++-....+.    .....
T Consensus       752 ~e~-pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk~-------------S-eRQv~~Y~Aq~l~~~pl~t~~lDvaps  815 (1012)
T KOG1445|consen  752 REQ-PVYEG-KGPVGTRGARILWACDGRIVIVVGFDKS-------------S-ERQVQMYDAQTLDLRPLYTQVLDVAPS  815 (1012)
T ss_pred             CCC-ccccC-CCCccCcceeEEEEecCcEEEEeccccc-------------c-hhhhhhhhhhhccCCcceeeeecccCc
Confidence            653 33221 1111123345788888884444421110             0 113555665432222111    11122


Q ss_pred             CceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          203 PNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      |---.+++|.+.|++++..+..|+.|.+-.
T Consensus       816 ~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  816 PLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             cccccccCCCceEEEecCCCceEEEEEecC
Confidence            223356789999999999999999998754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.27  E-value=6  Score=35.60  Aligned_cols=195  Identities=15%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcceEEEEe
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRPLGLCFN  104 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~  104 (359)
                      +++.++.-....+|.|..+.+-+.++.. +.|++=+-.+..|......                 .... ......|.+.
T Consensus         9 ~~v~l~t~~~l~dV~F~d~~~G~~VG~~-g~il~T~DGG~tW~~~~~~-----------------~~~~~~~~l~~I~f~   70 (302)
T PF14870_consen    9 QQVSLPTDKPLLDVAFVDPNHGWAVGAY-GTILKTTDGGKTWQPVSLD-----------------LDNPFDYHLNSISFD   70 (302)
T ss_dssp             EEEE-S-SS-EEEEEESSSS-EEEEETT-TEEEEESSTTSS-EE----------------------S-----EEEEEEEE
T ss_pred             EEeecCCCCceEEEEEecCCEEEEEecC-CEEEEECCCCccccccccC-----------------CCccceeeEEEEEec
Confidence            3555555567789999977774445554 6665543333345543210                 0000 0112355565


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                        +++.|++.. .+++....++| ..+.+... ...+ ..+..+....++. ++++.                  ..|.|
T Consensus        71 --~~~g~ivG~-~g~ll~T~DgG~tW~~v~l~-~~lp-gs~~~i~~l~~~~-~~l~~------------------~~G~i  126 (302)
T PF14870_consen   71 --GNEGWIVGE-PGLLLHTTDGGKTWERVPLS-SKLP-GSPFGITALGDGS-AELAG------------------DRGAI  126 (302)
T ss_dssp             --TTEEEEEEE-TTEEEEESSTTSS-EE-----TT-S-S-EEEEEEEETTE-EEEEE------------------TT--E
T ss_pred             --CCceEEEcC-CceEEEecCCCCCcEEeecC-CCCC-CCeeEEEEcCCCc-EEEEc------------------CCCcE
Confidence              456787653 35554455544 34443211 1111 1334455445555 55541                  13467


Q ss_pred             EEEeCCCCcEEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEE-EEEcCCCCCcceeEeec-CCCCCCceEECCCCCEE
Q 018242          184 MKYDPATKQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRIL-RYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFW  260 (359)
Q Consensus       184 ~~~d~~~~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~-~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lw  260 (359)
                      |+-...+...+.+... ....+.+.-++||+++.++  ..+.++ .++.  .. ..-+.... ......+|.++++|+||
T Consensus       127 y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~--G~-~~w~~~~r~~~~riq~~gf~~~~~lw  201 (302)
T PF14870_consen  127 YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDP--GQ-TTWQPHNRNSSRRIQSMGFSPDGNLW  201 (302)
T ss_dssp             EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-T--T--SS-EEEE--SSS-EEEEEE-TTS-EE
T ss_pred             EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecC--CC-ccceEEccCccceehhceecCCCCEE
Confidence            7655444454443322 2233556667888755454  334444 3442  21 11222221 23345678999999999


Q ss_pred             EEEecCC
Q 018242          261 VGIHSRR  267 (359)
Q Consensus       261 v~~~~~~  267 (359)
                      +.+.++.
T Consensus       202 ~~~~Gg~  208 (302)
T PF14870_consen  202 MLARGGQ  208 (302)
T ss_dssp             EEETTTE
T ss_pred             EEeCCcE
Confidence            9886543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=93.26  E-value=8.8  Score=37.47  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=39.5

Q ss_pred             EEEccCCCEEEEEecCCCEEEEEEcCCCCCccee-Ee--ecCC------CCCCceEECCCCC-EEEEEecCCCccccccc
Q 018242          206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIE-IV--AQLP------GFPDNIKRSPRGG-FWVGIHSRRKGISKLVL  275 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~-~~--~~~~------~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~  275 (359)
                      ..+..|..+|.-+...++.|.+||+..+...-.+ ..  ...+      -.--+++.|..|. |++.+.++.      |+
T Consensus       223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s------Iy  296 (720)
T KOG0321|consen  223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS------IY  296 (720)
T ss_pred             EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc------EE
Confidence            3455788877777776899999999754321111 00  0011      0123588899996 666555433      66


Q ss_pred             cCCc
Q 018242          276 SFPW  279 (359)
Q Consensus       276 ~~~~  279 (359)
                      .|+.
T Consensus       297 ~ynm  300 (720)
T KOG0321|consen  297 FYNM  300 (720)
T ss_pred             EEec
Confidence            6654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.16  E-value=1.6  Score=39.75  Aligned_cols=111  Identities=14%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             EEEEecC-CCeEE-EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          100 GLCFNKT-NGDLY-IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       100 gi~~~~~-~g~l~-v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ++.|.+. ...-| .++..+.+..||+..+. +++... + ...+.+..+...|+|++||+++.                
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~f-d-~~E~~is~~~l~p~gn~Iy~gn~----------------  267 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQF-D-FLENPISSTGLTPSGNFIYTGNT----------------  267 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccC-cceeEe-c-cccCcceeeeecCCCcEEEEecc----------------
Confidence            5556552 13444 44666678889987654 233221 1 11235667889999999999853                


Q ss_pred             CCCceEEEEeCCCCcEEEE-eCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          178 DKTGRLMKYDPATKQVTVL-LGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~-~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                        .+.+..||..++++... ..+. -.+.+|...|.+. ++.+..-+..|..+|++.
T Consensus       268 --~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  268 --KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             --cchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence              45788899887655432 2332 3468888887765 344444455677777654

>PRK13616 lipoprotein LpqB; Provisional

Probab=93.11  E-value=10  Score=37.75  Aligned_cols=71  Identities=8%  Similarity=0.044  Sum_probs=41.6

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE---EeCCCCcEEE-----EeCCCCC-CceEEEccCCC
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK---YDPATKQVTV-----LLGNLSF-PNGVALSEDGN  213 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~---~d~~~~~~~~-----~~~~~~~-p~gia~~~d~~  213 (359)
                      .+..+.+++||.++.+.-.                   +.|+.   ...++|..+.     +...... +..+.+..++.
T Consensus       449 ~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~  509 (591)
T PRK13616        449 PISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS  509 (591)
T ss_pred             CcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence            5788999999997776521                   23333   2333444322     2222333 46788888887


Q ss_pred             EEEEEec-CCCEEEEEEcCCC
Q 018242          214 YILLAET-TSCRILRYWLKTS  233 (359)
Q Consensus       214 ~l~v~~~-~~~~i~~~~~~~~  233 (359)
                       |++... .+..++++.+++.
T Consensus       510 -L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        510 -LVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             -EEEEecCCCCceEEEecCCc
Confidence             455443 3456888887754

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.10  E-value=0.39  Score=28.67  Aligned_cols=38  Identities=24%  Similarity=0.080  Sum_probs=30.6

Q ss_pred             EeeCCCCCCceEEEccCC-CeeEEecCCCEEEEEEcCCc
Q 018242           28 YQIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQR   65 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~   65 (359)
                      +...++..|.++++|+.+ +++|++...+.|.+.+.++.
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            445578899999999975 56778988899999887764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=92.90  E-value=7.4  Score=35.65  Aligned_cols=162  Identities=12%  Similarity=0.068  Sum_probs=89.3

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC--CcceEEEEecCCCeEEEE
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC--GRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~gi~~~~~~g~l~v~  113 (359)
                      -..|.|+.+|+.|..+..+-++..|+-+..-.+..+.+               +.+....  .....++|+..+..+|-+
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP---------------I~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP---------------IGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC---------------ceeccCccccceEEEEEccCCeeEecC
Confidence            34688888888444555556777787654312111100               1111111  234578888745556655


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  192 (359)
                      .....+++-|.++.+...+.....  .-..++++.++|-.+ +++..+                 ..+.|..||..... 
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~--~~~~VY~m~~~P~DN-~~~~~t-----------------~~~~V~~~D~Rd~~~  183 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENN--NRGDVYHMDQHPTDN-TLIVVT-----------------RAKLVSFIDNRDRQN  183 (609)
T ss_pred             CCcceeEeeecccceeeeeecccC--cccceeecccCCCCc-eEEEEe-----------------cCceEEEEeccCCCC
Confidence            545568888888776544433211  123567788888888 666532                 24556667654221 


Q ss_pred             -EEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          193 -VTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       193 -~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                       ...+.  .....-....|.|..-.|+.++...+++-+||+..
T Consensus       184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence             11111  11112234556665555777777778888888753

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.89  E-value=11  Score=37.53  Aligned_cols=112  Identities=12%  Similarity=0.136  Sum_probs=61.0

Q ss_pred             ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242          145 NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR  224 (359)
Q Consensus       145 ~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~  224 (359)
                      ..-.++++|+.+|+...+..      ...+......+.++.++.++++...  .-...+..+.+++||+++.+..  .++
T Consensus       400 t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~  469 (591)
T PRK13616        400 TRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGK  469 (591)
T ss_pred             CCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCE
Confidence            34589999777998843211      0011111234567766666555443  1122478899999999876665  357


Q ss_pred             EEEEEcCCCCCcceeE-----eec-CCCCCCceEECCCCCEEEEEecC
Q 018242          225 ILRYWLKTSKAGTIEI-----VAQ-LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       225 i~~~~~~~~~~~~~~~-----~~~-~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      |++--+....-+..+.     +.. +...+..+.+-.++.|.+++...
T Consensus       470 v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~  517 (591)
T PRK13616        470 VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP  517 (591)
T ss_pred             EEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence            7773221111112111     211 22334567787788888776543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=92.83  E-value=1.2  Score=38.48  Aligned_cols=70  Identities=24%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEec
Q 018242          142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAET  220 (359)
Q Consensus       142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~  220 (359)
                      ..++++.+-+|++ +..+-                 ++++++.+|+=.+.... .+..+-...+.+||+||-. +..+.+
T Consensus       252 pGv~gvrIRpD~K-IlATA-----------------GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaas  312 (323)
T KOG0322|consen  252 PGVSGVRIRPDGK-ILATA-----------------GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAAS  312 (323)
T ss_pred             CCccceEEccCCc-EEeec-----------------ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhcc
Confidence            3577899999999 77762                 34455555544433322 2223335678999999965 778888


Q ss_pred             CCCEEEEEEc
Q 018242          221 TSCRILRYWL  230 (359)
Q Consensus       221 ~~~~i~~~~~  230 (359)
                      .+.+|-.|++
T Consensus       313 kD~rISLWkL  322 (323)
T KOG0322|consen  313 KDARISLWKL  322 (323)
T ss_pred             CCceEEeeec
Confidence            8889988874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=92.74  E-value=5.9  Score=34.05  Aligned_cols=80  Identities=9%  Similarity=-0.034  Sum_probs=53.6

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-..|..||.-+-++.+..++-+|.+|.++++++..                    +.......+.++.-..++.++-+.
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~--------------------~rGHtDYvH~vv~R~~~~qilsG~  175 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE--------------------YRGHTDYVHSVVGRNANGQILSGA  175 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE--------------------EcCCcceeeeeeecccCcceeecC
Confidence            344889997543366666889999999999876542                    233334456666534378888776


Q ss_pred             CCCcEEEEeCCCCeEEEEee
Q 018242          115 AYFGLLKVGPEGGLATAVAT  134 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~  134 (359)
                      ..+.+..+|.++++...+..
T Consensus       176 EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  176 EDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             CCccEEEEeccccceeEEec
Confidence            55557788999887655444

>PRK13684 Ycf48-like protein; Provisional

Probab=92.71  E-value=7.9  Score=35.48  Aligned_cols=138  Identities=12%  Similarity=0.097  Sum_probs=65.8

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      +..+.... ++.+|++...+.|++-+-.+...+.+...    ....++++.+++++. +++..                 
T Consensus       134 ~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~~~----~~g~~~~i~~~~~g~-~v~~g-----------------  190 (334)
T PRK13684        134 PYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALVED----AAGVVRNLRRSPDGK-YVAVS-----------------  190 (334)
T ss_pred             ceEEEEEC-CCcceeeeccceEEEECCCCCCceeCcCC----CcceEEEEEECCCCe-EEEEe-----------------
Confidence            33443333 45566655444455544334444433221    123567788888886 55441                 


Q ss_pred             CCCceEEEE-eCCCCcEEEEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEE-cCCCCCcceeEeecCC-----CCCC
Q 018242          178 DKTGRLMKY-DPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYW-LKTSKAGTIEIVAQLP-----GFPD  249 (359)
Q Consensus       178 ~~~g~v~~~-d~~~~~~~~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~-~~~~~~~~~~~~~~~~-----~~p~  249 (359)
                       ..|.+++- +..+...+.+.. ......++++.++++ +|+.... + ..++. .++. .+....  ..+     ....
T Consensus       191 -~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~-G-~~~~~s~d~G-~sW~~~--~~~~~~~~~~l~  263 (334)
T PRK13684        191 -SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARG-G-QIRFNDPDDL-ESWSKP--IIPEITNGYGYL  263 (334)
T ss_pred             -CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecC-C-EEEEccCCCC-Cccccc--cCCcccccccee
Confidence             13455554 222223444332 223457888888887 5555433 3 33342 2221 111110  111     1123


Q ss_pred             ceEECCCCCEEEEEec
Q 018242          250 NIKRSPRGGFWVGIHS  265 (359)
Q Consensus       250 ~i~~d~~G~lwv~~~~  265 (359)
                      ++++.+++.+|++...
T Consensus       264 ~v~~~~~~~~~~~G~~  279 (334)
T PRK13684        264 DLAYRTPGEIWAGGGN  279 (334)
T ss_pred             eEEEcCCCCEEEEcCC
Confidence            4677778888886653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.52  E-value=9.5  Score=35.95  Aligned_cols=121  Identities=14%  Similarity=0.142  Sum_probs=64.8

Q ss_pred             EEEEecCCCeEEEE-eCCC----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          100 GLCFNKTNGDLYIA-DAYF----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       100 gi~~~~~~g~l~v~-~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ++.+++++..+.++ +..+    .|..+|.++|+...  ..+.   ......+.+.++|+.+|.+.........      
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~------  196 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTS------  196 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccc---ccccceEEEeCCCCEEEEEEeCcccccc------
Confidence            56788844445555 3232    28888999986532  2111   1122238999998866666432110000      


Q ss_pred             eecCCCceEEEEeCCCCcEE--EEeCCCCCCc---eEEEccCCCEEEEEecCC---CEEEEEEcCC
Q 018242          175 LSGDKTGRLMKYDPATKQVT--VLLGNLSFPN---GVALSEDGNYILLAETTS---CRILRYWLKT  232 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~--~~~~~~~~p~---gia~~~d~~~l~v~~~~~---~~i~~~~~~~  232 (359)
                       .......|++....+...+  .+......+.   ++..++|++++++.....   ..++.+++..
T Consensus       197 -~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  197 -DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             -cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence             0011335888887655322  3433333333   678899999877654443   4578887765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=92.51  E-value=5.9  Score=33.51  Aligned_cols=79  Identities=15%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCCcc
Q 018242          202 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWI  280 (359)
Q Consensus       202 ~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~  280 (359)
                      ....++.+|.|+ |+++...+..-..||+.++..  .+.|.....-.+.+.++|.-. +..++.+..      +...+.+
T Consensus       233 avaav~vdpsgr-ll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~------ikltdlq  303 (350)
T KOG0641|consen  233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMK------IKLTDLQ  303 (350)
T ss_pred             eeEEEEECCCcc-eeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccce------EEEeecc
Confidence            345788999997 788888888888899876532  233433223345677877443 333444332      6666677


Q ss_pred             ceeeecCCc
Q 018242          281 GNVLIKLPI  289 (359)
Q Consensus       281 g~~~~~~~~  289 (359)
                      |.+.+.+|.
T Consensus       304 gdla~el~~  312 (350)
T KOG0641|consen  304 GDLAHELPI  312 (350)
T ss_pred             cchhhcCce
Confidence            877776653

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=92.49  E-value=9.1  Score=35.63  Aligned_cols=145  Identities=10%  Similarity=0.082  Sum_probs=85.9

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPE  125 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~  125 (359)
                      +|..+..+..|..||..+++-..                    .+.+.......+.+.+....+.+..... .+..+|..
T Consensus       258 VLaSgsaD~TV~lWD~~~g~p~~--------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  258 VLASGSADKTVKLWDVDTGKPKS--------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             eEEecCCCceEEEEEcCCCCcce--------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            57788889999999999873221                    2334445667788887666766654443 35555543


Q ss_pred             C-CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC-cEE-EEeCCCCC
Q 018242          126 G-GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK-QVT-VLLGNLSF  202 (359)
Q Consensus       126 ~-~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~-~~~~~~~~  202 (359)
                      . ... ...-..    ...+..+++++.....++.                 ++..|.|+.+|.... +.. .+..+...
T Consensus       318 ~~~~s-~~~wk~----~g~VEkv~w~~~se~~f~~-----------------~tddG~v~~~D~R~~~~~vwt~~AHd~~  375 (463)
T KOG0270|consen  318 DPSNS-GKEWKF----DGEVEKVAWDPHSENSFFV-----------------STDDGTVYYFDIRNPGKPVWTLKAHDDE  375 (463)
T ss_pred             Ccccc-CceEEe----ccceEEEEecCCCceeEEE-----------------ecCCceEEeeecCCCCCceeEEEeccCC
Confidence            1 000 000000    1134456777654423333                 133567887876532 221 22233345


Q ss_pred             CceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          203 PNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ..||+++.....+..+.+....+..|++...
T Consensus       376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             cceEEecCCCCcceeeccccceEEEEeecCC
Confidence            6899998877778899888888888887644

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=92.48  E-value=6.4  Score=33.83  Aligned_cols=114  Identities=23%  Similarity=0.316  Sum_probs=68.3

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEe-ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVA-TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...||.+-|.+|+||-....++||.+|+.++..+.+. ......-.....++.+.|-=.+|-|-                
T Consensus        28 ~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv----------------   91 (236)
T PF14339_consen   28 SLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV----------------   91 (236)
T ss_pred             eEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE----------------
Confidence            4568989898999998877778999999999877662 11111111124455666653336665                


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCC----------CCC--ceEEEccC------CCEEEEEecCCCEEEEE
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNL----------SFP--NGVALSED------GNYILLAETTSCRILRY  228 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~----------~~p--~gia~~~d------~~~l~v~~~~~~~i~~~  228 (359)
                        +..|.=+|++++++.+......+          ..|  .+.|++..      ...||-.+...+.|++-
T Consensus        92 --s~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q  160 (236)
T PF14339_consen   92 --SNTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ  160 (236)
T ss_pred             --ccCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence              22456778888887744332211          122  24455432      34577777666666654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.40  E-value=7.5  Score=34.48  Aligned_cols=135  Identities=16%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +...|++++..||..+|..+-...++.......  ....  .++-.|++.||+|..                  .++..+
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyay--gv~vsGn~aYVadld------------------dgfLiv  153 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAY--GVYVSGNYAYVADLD------------------DGFLIV  153 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEE--EEEecCCEEEEeecc------------------CcEEEE
Confidence            788999999899999988754322222111100  1222  344567889999642                  245556


Q ss_pred             eCCCCcEEEEeCCCCCC----ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242          187 DPATKQVTVLLGNLSFP----NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  262 (359)
Q Consensus       187 d~~~~~~~~~~~~~~~p----~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  262 (359)
                      |..+-.-.++......|    ..++++  |++-|++.. ++++...|+..+....+..-.+.++....+.+. +.+.|++
T Consensus       154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs-dnr~y~v  229 (370)
T COG5276         154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS-DNRAYLV  229 (370)
T ss_pred             ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCCCCCeEEEEEecCCceEEEEec-CCeeEEE
Confidence            65443322333323333    345664  667888864 467899998765322221111122223444543 3556766


Q ss_pred             EecCC
Q 018242          263 IHSRR  267 (359)
Q Consensus       263 ~~~~~  267 (359)
                      ..+.+
T Consensus       230 vy~eg  234 (370)
T COG5276         230 VYDEG  234 (370)
T ss_pred             Ecccc
Confidence            66554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=92.30  E-value=10  Score=36.81  Aligned_cols=103  Identities=13%  Similarity=0.208  Sum_probs=57.3

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecC
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETT  221 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~  221 (359)
                      .++.+.++.+|. .+.+.+..              +..-.|+..+...+..+ .+......+....|.|...+++|+.  
T Consensus       523 ~i~~vtWHrkGD-YlatV~~~--------------~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--  585 (733)
T KOG0650|consen  523 SIRQVTWHRKGD-YLATVMPD--------------SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--  585 (733)
T ss_pred             ccceeeeecCCc-eEEEeccC--------------CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--
Confidence            466788888887 33332211              11224666665433222 1111223467788888877788874  


Q ss_pred             CCEEEEEEcCCCCCcceeEeec-CCC--CCCceEECCCC-CEEEEEecCC
Q 018242          222 SCRILRYWLKTSKAGTIEIVAQ-LPG--FPDNIKRSPRG-GFWVGIHSRR  267 (359)
Q Consensus       222 ~~~i~~~~~~~~~~~~~~~~~~-~~~--~p~~i~~d~~G-~lwv~~~~~~  267 (359)
                      ...|..||+...     +.... +++  ....|++.+.| +|.+++....
T Consensus       586 q~~vRiYdL~kq-----elvKkL~tg~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  586 QRSVRIYDLSKQ-----ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             ccceEEEehhHH-----HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence            356888887432     11111 222  24568888877 6888877655

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.19  E-value=0.26  Score=25.74  Aligned_cols=19  Identities=11%  Similarity=0.048  Sum_probs=15.3

Q ss_pred             ccccceEEEeCCCCEEEEEe
Q 018242          141 FRFCNSLDIDQSTGIIYFTD  160 (359)
Q Consensus       141 ~~~~~~l~~d~~g~~l~v~d  160 (359)
                      ...+..|..|++|+ ||++.
T Consensus         4 ~n~I~~i~~D~~G~-lWigT   22 (24)
T PF07494_consen    4 NNNIYSIYEDSDGN-LWIGT   22 (24)
T ss_dssp             SSCEEEEEE-TTSC-EEEEE
T ss_pred             CCeEEEEEEcCCcC-EEEEe
Confidence            45678999999999 99984

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.13  E-value=2  Score=40.05  Aligned_cols=40  Identities=15%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcce
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW   67 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~   67 (359)
                      -+..++ ++|..+....+|+-+.++...|.|-.+|-.+...
T Consensus       124 ~L~l~e-FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L  163 (545)
T KOG1272|consen  124 DLSLPE-FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL  163 (545)
T ss_pred             cccccc-cCCeeeeecCCccEEEecCCccceeeeeccccee
Confidence            344443 6999999999999888888889999888777643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.78  E-value=12  Score=35.53  Aligned_cols=123  Identities=18%  Similarity=0.165  Sum_probs=69.1

Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      .+++++.++++...+.. ..+    .-..-.+.|||++|.++...               ...-.||.+|..++....+.
T Consensus       219 ~i~~~~l~~g~~~~i~~-~~g----~~~~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt  278 (425)
T COG0823         219 RIYYLDLNTGKRPVILN-FNG----NNGAPAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLT  278 (425)
T ss_pred             eEEEEeccCCccceeec-cCC----ccCCccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceecc
Confidence            48888888876554433 111    11234788999977766322               22336999999877654432


Q ss_pred             CCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242          198 GNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       198 ~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  263 (359)
                      .....-..-.++|||+.++.+....+  .|+++++++...   +.+....+....-.++++|+..+-.
T Consensus       279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCCEEEEE
Confidence            22111224568899998777765555  466666554322   2222211212245667888755533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.70  E-value=12  Score=35.29  Aligned_cols=210  Identities=8%  Similarity=0.071  Sum_probs=98.8

Q ss_pred             eEEEccCCCeeEEec-CC----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           38 SLAFDALGEGPYTGV-SD----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~-~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .+.++|+|+++..+. .+    ..|+.+|..+++...-                   .+...  ...++.+.+++..+|.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-------------------~i~~~--~~~~~~W~~d~~~~~y  186 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-------------------GIENP--KFSSVSWSDDGKGFFY  186 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-------------------EEEEE--ESEEEEECTTSSEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-------------------ccccc--ccceEEEeCCCCEEEE
Confidence            456778887544332 22    3577788877633221                   11111  1223788884444444


Q ss_pred             EeCCC-----------cEEEEeCCCCeEE--EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          113 ADAYF-----------GLLKVGPEGGLAT--AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       113 ~~~~~-----------~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      .....           .|++....+...+  .+... ..... ...++..+++|+++++....               ..
T Consensus       187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~-~~~~~~~s~d~~~l~i~~~~---------------~~  249 (414)
T PF02897_consen  187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPF-WFVSVSRSKDGRYLFISSSS---------------GT  249 (414)
T ss_dssp             EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTT-SEEEEEE-TTSSEEEEEEES---------------SS
T ss_pred             EEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-cCCCc-EEEEEEecCcccEEEEEEEc---------------cc
Confidence            43211           2677777655432  22221 11111 13467889999977776332               12


Q ss_pred             C-ceEEEEeCCCC-----cEEEEeCCCCCCceEEEccCCCEEEEEecC---CCEEEEEEcCCCCCccee-Eeec-CCC-C
Q 018242          180 T-GRLMKYDPATK-----QVTVLLGNLSFPNGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIE-IVAQ-LPG-F  247 (359)
Q Consensus       180 ~-g~v~~~d~~~~-----~~~~~~~~~~~p~gia~~~d~~~l~v~~~~---~~~i~~~~~~~~~~~~~~-~~~~-~~~-~  247 (359)
                      . ..++.++...+     ..+.+........... ...+..+|+....   +++|.+++++........ .+.. ... .
T Consensus       250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v-~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~  328 (414)
T PF02897_consen  250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV-DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS  328 (414)
T ss_dssp             SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE-EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred             cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE-EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence            2 57888888754     4555543333222222 2234445554322   468888888765332222 3332 111 2


Q ss_pred             CCceEECCCCCEEEEEecCCCccccccccCCcc-ceeeecCCcc
Q 018242          248 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-GNVLIKLPID  290 (359)
Q Consensus       248 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~  290 (359)
                      ..++.... +.|.+....++.   ..+.+++.. ++....++.+
T Consensus       329 l~~~~~~~-~~Lvl~~~~~~~---~~l~v~~~~~~~~~~~~~~p  368 (414)
T PF02897_consen  329 LEDVSLFK-DYLVLSYRENGS---SRLRVYDLDDGKESREIPLP  368 (414)
T ss_dssp             EEEEEEET-TEEEEEEEETTE---EEEEEEETT-TEEEEEEESS
T ss_pred             EEEEEEEC-CEEEEEEEECCc---cEEEEEECCCCcEEeeecCC
Confidence            33444433 345555554432   224445555 5555544443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.66  E-value=1.4  Score=39.80  Aligned_cols=153  Identities=12%  Similarity=0.101  Sum_probs=91.3

Q ss_pred             CCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.++.+.|--. +|-++..++.|+.||..++...                     ...-..-.+.+|++.| +...|++
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl---------------------~KVi~~mRTN~IswnP-eafnF~~  246 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPL---------------------KKVILTMRTNTICWNP-EAFNFVA  246 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCcc---------------------ceeeeeccccceecCc-cccceee
Confidence            445677777543 3445558889999999876311                     1111223467899999 7777766


Q ss_pred             -eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 -DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                       +....+|.+|+..-. +++ ... ......+.++.++|-|. =+++-                 +.+-.|-.|....+.
T Consensus       247 a~ED~nlY~~DmR~l~-~p~-~v~-~dhvsAV~dVdfsptG~-Efvsg-----------------syDksIRIf~~~~~~  305 (433)
T KOG0268|consen  247 ANEDHNLYTYDMRNLS-RPL-NVH-KDHVSAVMDVDFSPTGQ-EFVSG-----------------SYDKSIRIFPVNHGH  305 (433)
T ss_pred             ccccccceehhhhhhc-ccc-hhh-cccceeEEEeccCCCcc-hhccc-----------------cccceEEEeecCCCc
Confidence             334468888875311 111 100 11223566788889998 66662                 222234444444444


Q ss_pred             EEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          193 VTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       193 ~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      .+.+.  ..+....++.++.|.+ .++++++++.|..|...
T Consensus       306 SRdiYhtkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  306 SRDIYHTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAK  345 (433)
T ss_pred             chhhhhHhhhheeeEEEEecccc-EEEecCCCcceeeeecc
Confidence            44332  2245567889999988 57778888888888753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.52  E-value=8.6  Score=33.29  Aligned_cols=159  Identities=13%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             CCceEEEcc--CCCeeEEec-------CCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           35 GPESLAFDA--LGEGPYTGV-------SDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        35 ~p~~i~~~~--~G~~l~~~~-------~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +=+++.++|  +++ |.+++       .+|+++.+++... ....+.                  .+ .......+++.+
T Consensus        10 ~GysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~------------------s~-d~~D~LfdV~Ws   69 (311)
T KOG0277|consen   10 HGYSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQ------------------SY-DTEDGLFDVAWS   69 (311)
T ss_pred             ccceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEE------------------ee-ecccceeEeeec
Confidence            446677776  466 44333       3488999988532 122110                  00 111224567777


Q ss_pred             cCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      +...++.++..++| +..+|.. -...++.. .. .....+..+-..+..++.+++.                 ++.+.|
T Consensus        70 e~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~-~k-EH~~EV~Svdwn~~~r~~~lts-----------------SWD~Ti  129 (311)
T KOG0277|consen   70 ENHENQVIAASGDGSLRLFDLT-MPSKPIHK-FK-EHKREVYSVDWNTVRRRIFLTS-----------------SWDGTI  129 (311)
T ss_pred             CCCcceEEEEecCceEEEeccC-CCCcchhH-HH-hhhhheEEeccccccceeEEee-----------------ccCCce
Confidence            64344444433444 6666632 11111111 00 0112233444444444355552                 456777


Q ss_pred             EEEeCCCC-cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          184 MKYDPATK-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       184 ~~~d~~~~-~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      -.+++.-. .+.++.+...-....+++|....++.+.+.++.+..||++.+
T Consensus       130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            77887643 444444444445677888866668999999999999998644

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=91.48  E-value=7.9  Score=32.78  Aligned_cols=75  Identities=12%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-C--CC----CCCceEECCCCCEEEEEecCCCccccccccCC
Q 018242          206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L--PG----FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP  278 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~~----~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  278 (359)
                      +++..=++.++++.+.+.+|.-||+.-+  .....+.+ .  .+    -...+++||.|+|.++......     .-.++
T Consensus       187 lalyswn~~m~~sgsqdktirfwdlrv~--~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-----c~lyd  259 (350)
T KOG0641|consen  187 LALYSWNGAMFASGSQDKTIRFWDLRVN--SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-----CMLYD  259 (350)
T ss_pred             EEEEEecCcEEEccCCCceEEEEeeecc--ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-----eEEEE
Confidence            4444434458899999999998987532  11222211 1  11    1234899999999997665443     33344


Q ss_pred             c-cceeeecC
Q 018242          279 W-IGNVLIKL  287 (359)
Q Consensus       279 ~-~g~~~~~~  287 (359)
                      . .|..+.++
T Consensus       260 irg~r~iq~f  269 (350)
T KOG0641|consen  260 IRGGRMIQRF  269 (350)
T ss_pred             eeCCceeeee
Confidence            3 44444444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=91.46  E-value=6.1  Score=35.19  Aligned_cols=151  Identities=17%  Similarity=0.157  Sum_probs=82.7

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      +..+.+...-..+|.+++++...... ..   ...+.+...|..+ |.++.+..               .+=.+|-|-+.
T Consensus       287 ~vTaSWDRTAnlwDVEtge~v~~LtG-Hd---~ELtHcstHptQr-LVvTsSrD---------------tTFRLWDFRea  346 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGEVVNILTG-HD---SELTHCSTHPTQR-LVVTSSRD---------------TTFRLWDFREA  346 (481)
T ss_pred             eeeeeccccceeeeeccCceeccccC-cc---hhccccccCCcce-EEEEeccC---------------ceeEeccchhh
Confidence            33334444466778888876443321 11   2345567778877 88874321               11123322221


Q ss_pred             CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCc
Q 018242          190 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG  269 (359)
Q Consensus       190 ~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~  269 (359)
                      =..+..+.++........|..|.  ..|+.+++.+|.+|++..-... ...+ ......+.+++...+.+..--.+++. 
T Consensus       347 I~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsp-lATI-RtdS~~NRvavs~g~~iIAiPhDNRq-  421 (481)
T KOG0300|consen  347 IQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSP-LATI-RTDSPANRVAVSKGHPIIAIPHDNRQ-  421 (481)
T ss_pred             cceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCc-ceee-ecCCccceeEeecCCceEEeccCCce-
Confidence            11222333333445566777666  4789999999999998653211 1111 11222355777664545444444554 


Q ss_pred             cccccccCCccceeeecCCc
Q 018242          270 ISKLVLSFPWIGNVLIKLPI  289 (359)
Q Consensus       270 ~~~~~~~~~~~g~~~~~~~~  289 (359)
                          +..|+..|..+.++|-
T Consensus       422 ----vRlfDlnG~RlaRlPr  437 (481)
T KOG0300|consen  422 ----VRLFDLNGNRLARLPR  437 (481)
T ss_pred             ----EEEEecCCCccccCCc
Confidence                7778888888888874

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=91.19  E-value=9.6  Score=34.08  Aligned_cols=156  Identities=8%  Similarity=0.016  Sum_probs=90.0

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.+.++.+|+..+.++..++.+..|...++. ++.+.                  .+........|+...+..++|.-+
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h------------------tls~Hd~~vtgvdWap~snrIvtc   73 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH------------------TLSEHDKIVTGVDWAPKSNRIVTC   73 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceece------------------ehhhhCcceeEEeecCCCCceeEc
Confidence            45689999999978888888888888776654 44332                  233333446788888866777777


Q ss_pred             eCCCcEEEEeC-CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYFGLLKVGP-EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ...++-+.+.. ++++.++.....+  -......+.+.|+.+ .++.-++               .....|..|.-+..-
T Consensus        74 s~drnayVw~~~~~~~WkptlvLlR--iNrAAt~V~WsP~en-kFAVgSg---------------ar~isVcy~E~ENdW  135 (361)
T KOG1523|consen   74 SHDRNAYVWTQPSGGTWKPTLVLLR--INRAATCVKWSPKEN-KFAVGSG---------------ARLISVCYYEQENDW  135 (361)
T ss_pred             cCCCCccccccCCCCeeccceeEEE--eccceeeEeecCcCc-eEEeccC---------------ccEEEEEEEecccce
Confidence            55555666665 6666543211000  112445678899988 6665332               223346666544321


Q ss_pred             EEEEeCCCCCC-----ceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          193 VTVLLGNLSFP-----NGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       193 ~~~~~~~~~~p-----~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                        .+......|     ..+.+.|.+- |..+.+.+....+|.
T Consensus       136 --WVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfS  174 (361)
T KOG1523|consen  136 --WVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFS  174 (361)
T ss_pred             --ehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEE
Confidence              122222223     5566666553 556666555555543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.98  E-value=16  Score=35.28  Aligned_cols=99  Identities=18%  Similarity=0.177  Sum_probs=57.9

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      .+..++.|..|+..+++++.......  .....+.+....+-..||-+                  +....+..+++...
T Consensus        75 lgt~~g~v~~ys~~~g~it~~~st~~--h~~~v~~~~~~~~~~ciyS~------------------~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   75 LGTPQGSVLLYSVAGGEITAKLSTDK--HYGNVNEILDAQRLGCIYSV------------------GADLKVVYILEKEK  134 (541)
T ss_pred             eecCCccEEEEEecCCeEEEEEecCC--CCCcceeeecccccCceEec------------------CCceeEEEEecccc
Confidence            34444558888888888765433111  11223333322222214433                  22456778888766


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...... .....+..++++||++.|.++.   .+|..|++...
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~k  174 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIETK  174 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccCc
Confidence            555443 3345678999999999766653   67999987653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=90.88  E-value=16  Score=35.17  Aligned_cols=113  Identities=14%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             cceEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           97 RPLGLCFNKTNGDLYIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      -.+.+.+++...+.-|+-.  -..+..+|.++..+-.+   ..+    --|.+.++|.|+.|.++-.+            
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~eg----pRN~~~fnp~g~ii~lAGFG------------  332 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEG----PRNTAFFNPHGNIILLAGFG------------  332 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCC----CccceEECCCCCEEEEeecC------------
Confidence            3577888883334333321  13578888886543222   111    23678999999977777433            


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC-----CCEEEEEEcCC
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-----SCRILRYWLKT  232 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~-----~~~i~~~~~~~  232 (359)
                         ...|.+-.||..+.+.. .........-..++|||++++.+.+.     ++++..|+..+
T Consensus       333 ---NL~G~mEvwDv~n~K~i-~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  333 ---NLPGDMEVWDVPNRKLI-AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ---CCCCceEEEeccchhhc-cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence               45677888887753221 11222334567889999987766554     35566666544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.80  E-value=22  Score=36.61  Aligned_cols=140  Identities=11%  Similarity=0.061  Sum_probs=69.4

Q ss_pred             CeeEEecCCCEEEEEEcCCcceEE-EeecCC---CCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------
Q 018242           46 EGPYTGVSDGRIIKWHQDQRRWLH-FARTSP---NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------  115 (359)
Q Consensus        46 ~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------  115 (359)
                      +++|+.+.+++|+.+|.++++... |.....   +......+.+    . ......|   .+.  ++.++++..      
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g----~-~~~ts~P---~V~--~g~VIvG~~v~d~~~  330 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPG----Y-YYPTSPP---LVA--GTTVVIGGRVADNYS  330 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCc----c-cccccCC---EEE--CCEEEEEeccccccc
Confidence            358899999999999999886543 221000   0000000000    0 0001111   122  677887742      


Q ss_pred             ----CCcEEEEeCCCCeEEEEeecCC---------Cc--ccccc---ceEEEeCCCCEEEEEeCCC--ccccccceeeee
Q 018242          116 ----YFGLLKVGPEGGLATAVATQSE---------GI--PFRFC---NSLDIDQSTGIIYFTDSSS--QFQRRNHISVIL  175 (359)
Q Consensus       116 ----~~~i~~~~~~~~~~~~~~~~~~---------~~--~~~~~---~~l~~d~~g~~l~v~d~~~--~~~~~~~~~~~~  175 (359)
                          .+.|..+|.++|+..-......         +.  ....+   ..++.|++.+.+|+.....  ++....  ....
T Consensus       331 ~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~--r~~~  408 (764)
T TIGR03074       331 TDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGD--RTPA  408 (764)
T ss_pred             ccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCc--cccC
Confidence                1238889999998653222110         00  00111   2467888766578853211  111000  0000


Q ss_pred             ecCCCceEEEEeCCCCcEEEEe
Q 018242          176 SGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      .....+.|+.+|++||+.+...
T Consensus       409 ~n~y~~slvALD~~TGk~~W~~  430 (764)
T TIGR03074       409 DEKYSSSLVALDATTGKERWVF  430 (764)
T ss_pred             cccccceEEEEeCCCCceEEEe
Confidence            1234568999999999988653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=90.55  E-value=1.2  Score=26.91  Aligned_cols=39  Identities=21%  Similarity=0.079  Sum_probs=28.3

Q ss_pred             EEEEEecCCC-EEEEEEcCCCCCcceeEe-ecCCCCCCceEECC
Q 018242          214 YILLAETTSC-RILRYWLKTSKAGTIEIV-AQLPGFPDNIKRSP  255 (359)
Q Consensus       214 ~l~v~~~~~~-~i~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~  255 (359)
                      .+||++...+ .|.+-++++..   .+.+ ...-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence            5999999999 99999887643   3333 33334599999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=90.29  E-value=15  Score=33.89  Aligned_cols=83  Identities=11%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCE
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  259 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  259 (359)
                      ...|..||..+++......+......+.|+.||. ++++...+..|.+||...++.-... ....+..|....+=.+|.+
T Consensus       153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i  230 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKI  230 (472)
T ss_pred             CceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCce
Confidence            4578889998887654444333346788999997 6777778889999986543221111 0111223444455567775


Q ss_pred             EEEEe
Q 018242          260 WVGIH  264 (359)
Q Consensus       260 wv~~~  264 (359)
                      ..+.+
T Consensus       231 ~tTGf  235 (472)
T KOG0303|consen  231 FTTGF  235 (472)
T ss_pred             eeecc
Confidence            55444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=90.28  E-value=13  Score=33.45  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             CCCceEEEEeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC---ceEE
Q 018242          178 DKTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD---NIKR  253 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~---~i~~  253 (359)
                      +..|.|..+|+.++++.. +.......+.|.+.|+.-.|+++.+.++.|..|++....  ..-++....+.-+   .+.+
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEE
Confidence            345778889998776543 334556678899999877799999999999999986542  2233333333222   2566


Q ss_pred             CCCCCEEEEE
Q 018242          254 SPRGGFWVGI  263 (359)
Q Consensus       254 d~~G~lwv~~  263 (359)
                      +.+|...++.
T Consensus       190 ~~~gd~i~Sc  199 (385)
T KOG1034|consen  190 SLDGDRIASC  199 (385)
T ss_pred             cCCCCeeecc
Confidence            7788744433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=90.26  E-value=2.9  Score=40.33  Aligned_cols=157  Identities=10%  Similarity=0.090  Sum_probs=90.4

Q ss_pred             EeeCCCCCCceEEEccCCCeeEEec-C---CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           28 YQIEGAIGPESLAFDALGEGPYTGV-S---DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~~G~~l~~~~-~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      +-+.-...-..+.+..+|. +++.. .   +..|+..++.... .+.                   .+....+.+..+.|
T Consensus       516 ~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~-sQ~-------------------PF~kskG~vq~v~F  574 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK-SQS-------------------PFRKSKGLVQRVKF  574 (733)
T ss_pred             EEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc-ccC-------------------chhhcCCceeEEEe
Confidence            3333335677899999999 44433 2   2566666665431 110                   22233355777889


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          104 NKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       104 ~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      .|..-.++|++ +..|..||...+.+..  ....  ....+..+++++.|..|.++                  +...++
T Consensus       575 HPs~p~lfVaT-q~~vRiYdL~kqelvK--kL~t--g~kwiS~msihp~GDnli~g------------------s~d~k~  631 (733)
T KOG0650|consen  575 HPSKPYLFVAT-QRSVRIYDLSKQELVK--KLLT--GSKWISSMSIHPNGDNLILG------------------SYDKKM  631 (733)
T ss_pred             cCCCceEEEEe-ccceEEEehhHHHHHH--HHhc--CCeeeeeeeecCCCCeEEEe------------------cCCCee
Confidence            99788899987 5567888876443210  1111  12366789999988767777                  334456


Q ss_pred             EEEeCC--CCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          184 MKYDPA--TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       184 ~~~d~~--~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      .-+|.+  +.-.+.+..+-.....+++.+.-- |+.+.+.++.+.+|.
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEe
Confidence            656654  222222222222345566654332 788888888888875

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=90.14  E-value=16  Score=33.98  Aligned_cols=128  Identities=15%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCC-EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG-IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +|+++|.++|+.+.+....     .....+.++|..- .|-++.-+ .|.           .-..+|+.++.++.....+
T Consensus       169 ~i~~idl~tG~~~~v~~~~-----~wlgH~~fsP~dp~li~fCHEG-pw~-----------~Vd~RiW~i~~dg~~~~~v  231 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFEDT-----DWLGHVQFSPTDPTLIMFCHEG-PWD-----------LVDQRIWTINTDGSNVKKV  231 (386)
T ss_dssp             EEEEEETTT--EEEEEEES-----S-EEEEEEETTEEEEEEEEE-S--TT-----------TSS-SEEEEETTS---EES
T ss_pred             eEEEEECCCCceeEEEecC-----ccccCcccCCCCCCEEEEeccC-Ccc-----------eeceEEEEEEcCCCcceee
Confidence            5999999999887665421     2344555554322 13333111 010           1123688888776555554


Q ss_pred             eCCCCC--CceEEEccCCCEEEE-EecCCC---EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242          197 LGNLSF--PNGVALSEDGNYILL-AETTSC---RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       197 ~~~~~~--p~gia~~~d~~~l~v-~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      ......  ...=-+.+||..++. .....+   .|..++++..   ..+.+...+. -.-...+++|+|+++....
T Consensus       232 ~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~---~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  232 HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG---ERRRLMEMPW-CSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT-----EEEEEEE-S-EEEEEE-TTSSEEEEEE--
T ss_pred             ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC---CceEEEeCCc-eeeeEEcCCCCEEEecCCC
Confidence            322110  011135678876443 443333   4555665432   2333333221 1124557899999988653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=90.03  E-value=2  Score=40.84  Aligned_cols=101  Identities=18%  Similarity=0.227  Sum_probs=66.9

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +.+.+.++. .+..+++.+||+.|.+-..+|-+.++|-++.++.-                    .+....+....++++
T Consensus       283 v~~w~~~~g-~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--------------------~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  283 VARWHIGEG-SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--------------------VMKSYFGGLLCVCWS  341 (636)
T ss_pred             cceeEeccc-cccceeEcCCCceEEEEecCceEEEeeccHHHHHH--------------------HHHhhccceEEEEEc
Confidence            446666643 88999999999977777888999999988753211                    233444566788999


Q ss_pred             cCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeC
Q 018242          105 KTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ  151 (359)
Q Consensus       105 ~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~  151 (359)
                      | ||+..+....+. +.++....+++...   ..+ ...+++.+++||
T Consensus       342 P-DGKyIvtGGEDDLVtVwSf~erRVVAR---GqG-HkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 P-DGKYIVTGGEDDLVTVWSFEERRVVAR---GQG-HKSWVSVVAFDP  384 (636)
T ss_pred             C-CccEEEecCCcceEEEEEeccceEEEe---ccc-cccceeeEeecc
Confidence            9 677655533333 55677766654321   122 235788899985

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=89.98  E-value=1.6  Score=26.38  Aligned_cols=41  Identities=17%  Similarity=0.111  Sum_probs=30.1

Q ss_pred             CCeeEEecCCC-EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           45 GEGPYTGVSDG-RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        45 G~~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      |+++|++.... .|.+-+.++...+.+                    +......|.||++|+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~v--------------------i~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTV--------------------ISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEE--------------------EESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEE--------------------EECCCCCcCEEEECC
Confidence            45789999998 999999988654432                    233456799999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=89.82  E-value=20  Score=35.99  Aligned_cols=149  Identities=11%  Similarity=0.021  Sum_probs=85.8

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCc-EEEEeCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFG-LLKVGPE  125 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~-i~~~~~~  125 (359)
                      ++.++..+|.|..||.......                 +.+..+.......+.+.|.+..-++.++..++| |-.+|..
T Consensus       102 lIAT~s~nG~i~vWdlnk~~rn-----------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR  164 (839)
T KOG0269|consen  102 LIATCSTNGVISVWDLNKSIRN-----------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR  164 (839)
T ss_pred             hheeecCCCcEEEEecCccccc-----------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence            4667778899999998752000                 011123344455678888887888888877777 4457776


Q ss_pred             CCeEEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcEE-EEeCCCCC
Q 018242          126 GGLATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQVT-VLLGNLSF  202 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~-~~~~~~~~  202 (359)
                      ..+.....   .+ ....+.++.+.|. ++ .|++-                 ...|.|.+||..- .+.+ .+..+...
T Consensus       165 ~~~S~~t~---~~-nSESiRDV~fsp~~~~-~F~s~-----------------~dsG~lqlWDlRqp~r~~~k~~AH~Gp  222 (839)
T KOG0269|consen  165 SKKSKSTF---RS-NSESIRDVKFSPGYGN-KFASI-----------------HDSGYLQLWDLRQPDRCEKKLTAHNGP  222 (839)
T ss_pred             cccccccc---cc-cchhhhceeeccCCCc-eEEEe-----------------cCCceEEEeeccCchhHHHHhhcccCc
Confidence            54432211   11 2346778888865 44 55552                 1245677788641 1111 11111111


Q ss_pred             CceEEEccCCCEEEEEecCCCEEEEEEcCCCCC
Q 018242          203 PNGVALSEDGNYILLAETTSCRILRYWLKTSKA  235 (359)
Q Consensus       203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~  235 (359)
                      ..-+.+.|++. .+.++..+..|..|+..++..
T Consensus       223 V~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  223 VLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             eEEEeecCCCc-eeeecCCCccEEEEeccCCCc
Confidence            23345668554 566666778899999876543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.80  E-value=13  Score=32.33  Aligned_cols=157  Identities=10%  Similarity=0.059  Sum_probs=84.2

Q ss_pred             CceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      --++++.+. -..++++..+|.+..||..-.                  +. ++..+++...+...+.....+++.++..
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~------------------s~-Pi~~~kEH~~EV~Svdwn~~~r~~~lts  123 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTMP------------------SK-PIHKFKEHKREVYSVDWNTVRRRIFLTS  123 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCCC------------------Cc-chhHHHhhhhheEEeccccccceeEEee
Confidence            335556554 235888899999999983211                  11 1223444445566666666677777765


Q ss_pred             CCCc-EEEEeCCCCe-EEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 AYFG-LLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~~~~-i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ..++ |-.+++.-.+ ++.+.    + ....+...+++|. .+ ++.+.++               ...-+++-+... |
T Consensus       124 SWD~TiKLW~~~r~~Sv~Tf~----g-h~~~Iy~a~~sp~~~n-lfas~Sg---------------d~~l~lwdvr~~-g  181 (311)
T KOG0277|consen  124 SWDGTIKLWDPNRPNSVQTFN----G-HNSCIYQAAFSPHIPN-LFASASG---------------DGTLRLWDVRSP-G  181 (311)
T ss_pred             ccCCceEeecCCCCcceEeec----C-CccEEEEEecCCCCCC-eEEEccC---------------CceEEEEEecCC-C
Confidence            5554 5556665332 22221    1 1234556667654 45 6666443               112234444333 4


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +...+..+....--.-+++-+..++++...++.|..||+..-
T Consensus       182 k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~  223 (311)
T KOG0277|consen  182 KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL  223 (311)
T ss_pred             ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence            444443222222222334545558888888899999998643

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=89.52  E-value=15  Score=33.00  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=29.7

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN  199 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  199 (359)
                      .+|++..+++|+ +.|+-.                 ....|+++++++|++.....+
T Consensus       145 HiNsV~~~~~G~-yLiS~R-----------------~~~~i~~I~~~tG~I~W~lgG  183 (299)
T PF14269_consen  145 HINSVDKDDDGD-YLISSR-----------------NTSTIYKIDPSTGKIIWRLGG  183 (299)
T ss_pred             EeeeeeecCCcc-EEEEec-----------------ccCEEEEEECCCCcEEEEeCC
Confidence            568888899999 777732                 135799999999998877644

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=89.28  E-value=1.5  Score=31.20  Aligned_cols=40  Identities=13%  Similarity=0.039  Sum_probs=32.0

Q ss_pred             CEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcC
Q 018242           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQD   63 (359)
Q Consensus        24 ~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~   63 (359)
                      ..++..+.++..|.||.++++++.+|++. ..+.|+.+...
T Consensus        44 ~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   44 KEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            34677888899999999999999888765 55788887654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=89.04  E-value=32  Score=35.99  Aligned_cols=79  Identities=15%  Similarity=0.048  Sum_probs=35.5

Q ss_pred             EEEeCCCCcEEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242          184 MKYDPATKQVTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  262 (359)
Q Consensus       184 ~~~d~~~~~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  262 (359)
                      |++-.++.+++.+... ...| -.|+.|-.+.++.+  .+..++.|++-..++.....+...+.....+.. ..-+++|+
T Consensus       917 yk~~~~g~~lellh~T~~~~~-v~Ai~~f~~~~Lag--vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt-~~~RI~Vg  992 (1205)
T KOG1898|consen  917 YKFVRNGDKLELLHKTEIPGP-VGAICPFQGRVLAG--VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT-YGARIVVG  992 (1205)
T ss_pred             EEEEecCceeeeeeccCCCcc-ceEEeccCCEEEEe--cccEEEEeeCChHHHHhhhhhccCceEEEEEee-cceEEEEe
Confidence            3333344455544322 2222 34566665544443  456899998743322111111112222222332 22367777


Q ss_pred             EecC
Q 018242          263 IHSR  266 (359)
Q Consensus       263 ~~~~  266 (359)
                      +...
T Consensus       993 D~qe  996 (1205)
T KOG1898|consen  993 DIQE  996 (1205)
T ss_pred             eccc
Confidence            7653

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=88.59  E-value=16  Score=31.82  Aligned_cols=86  Identities=17%  Similarity=0.298  Sum_probs=50.9

Q ss_pred             ceEEEEeCCCCcEEEEeC-------CCCCCceEEEccCCC----EEEEEecCCCEEEEEEcCCCCCccee--Eee--cCC
Q 018242          181 GRLMKYDPATKQVTVLLG-------NLSFPNGVALSEDGN----YILLAETTSCRILRYWLKTSKAGTIE--IVA--QLP  245 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~-------~~~~p~gia~~~d~~----~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~--~~~  245 (359)
                      -.+|.+||+.+.++.+..       ....+.|+++..+.+    +.+|+. ..+-+..|.+-....+...  .+.  .++
T Consensus       126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~  204 (364)
T COG4247         126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIP  204 (364)
T ss_pred             EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecC
Confidence            358889998877765432       235578999976543    244444 3467777877433222211  111  134


Q ss_pred             CCCCceEECC-CCCEEEEEecCC
Q 018242          246 GFPDNIKRSP-RGGFWVGIHSRR  267 (359)
Q Consensus       246 ~~p~~i~~d~-~G~lwv~~~~~~  267 (359)
                      ....|+..|. -|.||++.....
T Consensus       205 tQTEG~VaDdEtG~LYIaeEdva  227 (364)
T COG4247         205 TQTEGMVADDETGFLYIAEEDVA  227 (364)
T ss_pred             CcccceeeccccceEEEeeccce
Confidence            4466776655 689999987643

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=88.40  E-value=36  Score=35.79  Aligned_cols=195  Identities=15%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             EeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           28 YQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ++..+...+..+.++. .+.++|.......+..-...+.....                    ........+.++++|-.
T Consensus       431 ~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~--------------------~~~~g~~~~~~lavD~~  490 (877)
T KOG1215|consen  431 RPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE--------------------LCGDGLCIPEGLAVDWI  490 (877)
T ss_pred             EEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccce--------------------EeccCccccCcEEEEec
Confidence            3344333444555543 34556777777777776655442111                    01222345779999988


Q ss_pred             CCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      .+++|.++... .+...+.++..-..+...    ....+..++++|....+|.++.+. .              . .+.+
T Consensus       491 ~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~-~--------------~-~i~r  550 (877)
T KOG1215|consen  491 GDNIYWTDEGNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ-P--------------P-RIER  550 (877)
T ss_pred             cCCceecccCCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCC-C--------------c-hhhh
Confidence            89999887654 355555554432222221    114677899998876699987652 1              1 2333


Q ss_pred             EeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCC-EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242          186 YDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSC-RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       186 ~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  263 (359)
                      -..+...... +..+...|+|++++-..+.+||.+.... .+...+.++....  .........|.++++-. +++|-..
T Consensus       551 a~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~--~~~~~~~~~p~~~~~~~-~~iyw~d  627 (877)
T KOG1215|consen  551 ASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR--VVDSEDLPHPFGLSVFE-DYIYWTD  627 (877)
T ss_pred             hcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE--EeccccCCCceEEEEec-ceeEEee
Confidence            3333222222 2334578999999977777999998887 6777776554221  11111223366666532 3455444


Q ss_pred             ec
Q 018242          264 HS  265 (359)
Q Consensus       264 ~~  265 (359)
                      +.
T Consensus       628 ~~  629 (877)
T KOG1215|consen  628 WS  629 (877)
T ss_pred             cc
Confidence            43

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=87.99  E-value=19  Score=32.04  Aligned_cols=214  Identities=12%  Similarity=0.060  Sum_probs=108.3

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe--EEEE-e
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD--LYIA-D  114 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~--l~v~-~  114 (359)
                      ++++..||..+|++.-++.+..||+.+++..++...                     ......+.+-+ ..+  +.++ .
T Consensus        77 ~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H---------------------d~pvkt~~wv~-~~~~~cl~TGS  134 (347)
T KOG0647|consen   77 DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH---------------------DAPVKTCHWVP-GMNYQCLVTGS  134 (347)
T ss_pred             EEEEccCCceEEeeccCCceEEEEccCCCeeeeeec---------------------ccceeEEEEec-CCCcceeEecc
Confidence            889999999899999999999999999877666421                     11122343333 222  3333 4


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC--c
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK--Q  192 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~  192 (359)
                      +...|-.+|+.....  +..      ...|        ++ .|..|-...       +... ....-+|..|+.+.+  +
T Consensus       135 WDKTlKfWD~R~~~p--v~t------~~LP--------eR-vYa~Dv~~p-------m~vV-ata~r~i~vynL~n~~te  189 (347)
T KOG0647|consen  135 WDKTLKFWDTRSSNP--VAT------LQLP--------ER-VYAADVLYP-------MAVV-ATAERHIAVYNLENPPTE  189 (347)
T ss_pred             cccceeecccCCCCe--eee------eecc--------ce-eeehhccCc-------eeEE-EecCCcEEEEEcCCCcch
Confidence            444566777764321  111      0011        11 222221100       0000 001124666666433  2


Q ss_pred             EEEEeCCCC-CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-c-CCC-------CCCceEECCCCCEEEE
Q 018242          193 VTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q-LPG-------FPDNIKRSPRGGFWVG  262 (359)
Q Consensus       193 ~~~~~~~~~-~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~-------~p~~i~~d~~G~lwv~  262 (359)
                      ++.....+. ..+.+++.+|.+ .+..++-.+++....++.++...-=.|. . ..+       -.+.|++-+.-..+++
T Consensus       190 ~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT  268 (347)
T KOG0647|consen  190 FKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT  268 (347)
T ss_pred             hhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence            222222222 346778877766 4666677788888877754221110111 1 001       1245788775556665


Q ss_pred             EecCCCccccccccCCcc-ceeeecCCccceeeeeecccccCc
Q 018242          263 IHSRRKGISKLVLSFPWI-GNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      ....+.     ...++.+ +.-++..+...+.+++|.+..+..
T Consensus       269 aGsDGt-----f~FWDkdar~kLk~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  269 AGSDGT-----FSFWDKDARTKLKTSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             ecCCce-----EEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence            555443     4445653 334555455555666666555444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=87.94  E-value=7.6  Score=35.08  Aligned_cols=117  Identities=11%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             eEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242          146 SLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCR  224 (359)
Q Consensus       146 ~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~  224 (359)
                      -++.+-+.+ +.|+-++                 ...|..+|.++++.. ++.++-...-++.|+. |  ..++.+.+..
T Consensus       240 VLCLqyd~r-viisGSS-----------------DsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g--~mvtcSkDrs  298 (499)
T KOG0281|consen  240 VLCLQYDER-VIVSGSS-----------------DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-G--YMVTCSKDRS  298 (499)
T ss_pred             EEeeeccce-EEEecCC-----------------CceEEEEeccCCchhhHHhhhcceeEEEEEeC-C--EEEEecCCce
Confidence            356666777 8777333                 457888998887643 2334444556777753 3  7888899999


Q ss_pred             EEEEEcCCCCCcc-eeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCcc
Q 018242          225 ILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID  290 (359)
Q Consensus       225 i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  290 (359)
                      +.+|+++.+...+ ..++...-.-.+-+.+|  .++.|+..+.+.     +..++ .+++.++.+...
T Consensus       299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRT-----ikvW~~st~efvRtl~gH  359 (499)
T KOG0281|consen  299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT-----IKVWSTSTCEFVRTLNGH  359 (499)
T ss_pred             eEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCce-----EEEEeccceeeehhhhcc
Confidence            9999987653211 11121111112223443  456666666654     55544 356666665544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=87.79  E-value=7.3  Score=38.68  Aligned_cols=114  Identities=16%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      .+.|+++|..+.+.++--...|..|+...++-+.......+ ....+--+..||.|  +|++.+-+              
T Consensus       599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-~eG~lIKv~lDPSg--iY~atScs--------------  661 (1080)
T KOG1408|consen  599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-HEGDLIKVILDPSG--IYLATSCS--------------  661 (1080)
T ss_pred             EEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc-CCCceEEEEECCCc--cEEEEeec--------------
Confidence            45788888445554443334588899988765433221111 12345567889999  57775432              


Q ss_pred             CCCceEEEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          178 DKTGRLMKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                        .-.+-.+|-.+++.... .++.....|+.|.+|=++|+ +-+.+++|++|.+.
T Consensus       662 --dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI-SvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  662 --DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI-SVSGDGCIFVWKLP  713 (1080)
T ss_pred             --CCceEEEEeccchhhhhhcCcchheeeeeecccchhhe-eecCCceEEEEECc
Confidence              12466666666766532 34456678999999988654 44678899999864

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.61  E-value=21  Score=32.30  Aligned_cols=59  Identities=15%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-----CcEEEEeCCCCeE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-----FGLLKVGPEGGLA  129 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-----~~i~~~~~~~~~~  129 (359)
                      ..+++||+.+++|+.....                  ... .+....+..- +++||+....     ..+.+||+++.++
T Consensus       139 ~~v~~yd~~~~~W~~~~~~------------------p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       139 NKSYLFNLETQEWFELPDF------------------PGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             ceEEEEcCCCCCeeECCCC------------------CCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCee
Confidence            4689999999888765311                  000 1111222223 6788886432     1367899999888


Q ss_pred             EEEe
Q 018242          130 TAVA  133 (359)
Q Consensus       130 ~~~~  133 (359)
                      +.+.
T Consensus       199 ~~~~  202 (323)
T TIGR03548       199 QKVA  202 (323)
T ss_pred             EECC
Confidence            7654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.61  E-value=3.7  Score=42.52  Aligned_cols=160  Identities=14%  Similarity=0.169  Sum_probs=90.8

Q ss_pred             eEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           38 SLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        38 ~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ++.|.+.+. ++-.+..+|.|+.||.+.-+ +.+     ++            .......+...+.+..+..+++.+...
T Consensus       121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~-----~~------------~~~~~~~eI~~lsWNrkvqhILAS~s~  182 (1049)
T KOG0307|consen  121 GLDFNPFQGNLLASGADDGEILIWDLNKPE-TPF-----TP------------GSQAPPSEIKCLSWNRKVSHILASGSP  182 (1049)
T ss_pred             eeeccccCCceeeccCCCCcEEEeccCCcC-CCC-----CC------------CCCCCcccceEeccchhhhHHhhccCC
Confidence            678887654 67777888999999987531 111     00            001112234456666655667666443


Q ss_pred             C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCC-EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC--c
Q 018242          117 F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG-IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK--Q  192 (359)
Q Consensus       117 ~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--~  192 (359)
                      . ....+|.+..+  .+............+.|.++|++. +|+++...               ...-.|..+|..--  -
T Consensus       183 sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d---------------d~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  183 SGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD---------------DSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             CCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCC---------------CCCceeEeecccccCCc
Confidence            3 57778887553  222211111113567899999976 46666221               11235666773210  1


Q ss_pred             EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          193 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ++.+..+-.+.-++.+++.+..+.++.-.++++..|+...
T Consensus       246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            1122233455567777776656788888889999998654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=87.21  E-value=25  Score=32.72  Aligned_cols=157  Identities=11%  Similarity=0.121  Sum_probs=87.6

Q ss_pred             ceEEEccCCCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      +++++.+...-+|.+ ..++.+..||..+++-+               ..   ..........+.++|.|-++.++.+..
T Consensus       231 eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~---------------~~---~~~~ah~~~vn~~~fnp~~~~ilAT~S  292 (422)
T KOG0264|consen  231 EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK---------------PS---HSVKAHSAEVNCVAFNPFNEFILATGS  292 (422)
T ss_pred             ehhhccccchhhheeecCCCeEEEEEcCCCCCC---------------Cc---ccccccCCceeEEEeCCCCCceEEecc
Confidence            345555544335544 45588999998742000               00   012223345678899997777766543


Q ss_pred             -CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcE
Q 018242          116 -YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQV  193 (359)
Q Consensus       116 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~  193 (359)
                       .+.|..+|+..=.. .+.. ..+ ....+..+.++|....+..+ ++                ..+.+.++|... ++.
T Consensus       293 ~D~tV~LwDlRnL~~-~lh~-~e~-H~dev~~V~WSPh~etvLAS-Sg----------------~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  293 ADKTVALWDLRNLNK-PLHT-FEG-HEDEVFQVEWSPHNETVLAS-SG----------------TDRRLNVWDLSRIGEE  352 (422)
T ss_pred             CCCcEEEeechhccc-Ccee-ccC-CCcceEEEEeCCCCCceeEe-cc----------------cCCcEEEEeccccccc
Confidence             44688888864321 1111 111 12356678888887745444 22                244566666542 111


Q ss_pred             E-----------E-Ee--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          194 T-----------V-LL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       194 ~-----------~-~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      +           . +.  ++....+.+.++|..-+++.+-+.++.+.+|.+.
T Consensus       353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            1           0 11  1123345677788777888888888888888765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.20  E-value=30  Score=33.46  Aligned_cols=123  Identities=13%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEG  126 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~  126 (359)
                      .+..+++.|.|..|+...++.+.+-....+                  .+....+.-..+-+.+|-+.....+..++++.
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h------------------~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~  133 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKH------------------YGNVNEILDAQRLGCIYSVGADLKVVYILEKE  133 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCC------------------CCcceeeecccccCceEecCCceeEEEEeccc
Confidence            355677888899888887766654321111                  11111221122234455444333577778777


Q ss_pred             CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC-Cce
Q 018242          127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF-PNG  205 (359)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-p~g  205 (359)
                      .+.......    ....+..+++.+||. +.++-                   ...|-.+|.+++++....++-.. .+-
T Consensus       134 ~~~~~~~~~----~~~~~~sl~is~D~~-~l~~a-------------------s~~ik~~~~~~kevv~~ftgh~s~v~t  189 (541)
T KOG4547|consen  134 KVIIRIWKE----QKPLVSSLCISPDGK-ILLTA-------------------SRQIKVLDIETKEVVITFTGHGSPVRT  189 (541)
T ss_pred             ceeeeeecc----CCCccceEEEcCCCC-EEEec-------------------cceEEEEEccCceEEEEecCCCcceEE
Confidence            665443321    113567899999999 55541                   23577788887777655544333 345


Q ss_pred             EEEccC
Q 018242          206 VALSED  211 (359)
Q Consensus       206 ia~~~d  211 (359)
                      +.|..+
T Consensus       190 ~~f~~~  195 (541)
T KOG4547|consen  190 LSFTTL  195 (541)
T ss_pred             EEEEEe
Confidence            555443

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=87.16  E-value=19  Score=31.28  Aligned_cols=31  Identities=16%  Similarity=0.407  Sum_probs=21.8

Q ss_pred             CCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          202 FPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       202 ~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...|+..+..-..||+++. +-.||+|...++
T Consensus       206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~  236 (364)
T COG4247         206 QTEGMVADDETGFLYIAEE-DVAIWKYEAEPN  236 (364)
T ss_pred             cccceeeccccceEEEeec-cceeeecccCCC
Confidence            4567777655556999975 468999987644

>PLN02153 epithiospecifier protein

Probab=87.11  E-value=24  Score=32.30  Aligned_cols=119  Identities=12%  Similarity=0.065  Sum_probs=56.8

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~  128 (359)
                      ..+++||+.+.+|+......               ........-+.++..  ++.||+....      +.+.+||+++.+
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~---------------~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~  112 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANG---------------DVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNE  112 (341)
T ss_pred             CcEEEEECCCCEEEEcCccC---------------CCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence            35889999998887543110               000000001122222  6788876321      248899999988


Q ss_pred             EEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          129 ATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       129 ~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      ++.+.... ...+.......++.-+++ |||.--....   ...   ........|.+||+++.+...+.
T Consensus       113 W~~~~~~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~---~~~---~~~~~~~~v~~yd~~~~~W~~l~  175 (341)
T PLN02153        113 WTFLTKLDEEGGPEARTFHSMASDENH-VYVFGGVSKG---GLM---KTPERFRTIEAYNIADGKWVQLP  175 (341)
T ss_pred             EEEeccCCCCCCCCCceeeEEEEECCE-EEEECCccCC---Ccc---CCCcccceEEEEECCCCeEeeCC
Confidence            87653210 011111112222334566 8886211000   000   00001235888999887766543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=86.78  E-value=23  Score=31.73  Aligned_cols=72  Identities=11%  Similarity=0.207  Sum_probs=47.0

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE-EeCCCCcEE-EEeCCC--CCCceEEEccCCCEEEEE
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK-YDPATKQVT-VLLGNL--SFPNGVALSEDGNYILLA  218 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~~~-~~~~~~--~~p~gia~~~d~~~l~v~  218 (359)
                      .+.-++...+|. +..+-                 +..|++.| ||..+|+.. .+..+.  ....-|+|+|+..+|-+ 
T Consensus       183 ~Iacv~Ln~~Gt-~vATa-----------------StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav-  243 (346)
T KOG2111|consen  183 DIACVALNLQGT-LVATA-----------------STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV-  243 (346)
T ss_pred             ceeEEEEcCCcc-EEEEe-----------------ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-
Confidence            445577888897 65552                 23466665 777776543 233332  23457899999985554 


Q ss_pred             ecCCCEEEEEEcCCC
Q 018242          219 ETTSCRILRYWLKTS  233 (359)
Q Consensus       219 ~~~~~~i~~~~~~~~  233 (359)
                      .++.++|..|.+.+.
T Consensus       244 sSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  244 SSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCCeEEEEEeecC
Confidence            467899999998654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.53  E-value=35  Score=33.58  Aligned_cols=204  Identities=17%  Similarity=0.172  Sum_probs=110.8

Q ss_pred             eeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        29 ~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      ..+-..+=+++++..-+..++.+..+..+..||..+++=...                    +.  ++...+.+++. .+
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--------------------l~--gh~stv~~~~~-~~  301 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--------------------LQ--GHTSSVRCLTI-DP  301 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--------------------ec--CCCceEEEEEc-cC
Confidence            344455667888877566688999999999999877732211                    11  12233444454 34


Q ss_pred             eEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          109 DLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       109 ~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      .+.++ .....|..++..+++...+..   + ....++.+..+  +. +.|+-                 +..+.|..|+
T Consensus       302 ~~~~sgs~D~tVkVW~v~n~~~l~l~~---~-h~~~V~~v~~~--~~-~lvsg-----------------s~d~~v~VW~  357 (537)
T KOG0274|consen  302 FLLVSGSRDNTVKVWDVTNGACLNLLR---G-HTGPVNCVQLD--EP-LLVSG-----------------SYDGTVKVWD  357 (537)
T ss_pred             ceEeeccCCceEEEEeccCcceEEEec---c-ccccEEEEEec--CC-EEEEE-----------------ecCceEEEEE
Confidence            44444 334458888888776544332   1 12345566665  55 44441                 3345788888


Q ss_pred             CCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242          188 PATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       188 ~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      +.++++.... .+......+.++.. + .+.+.+.+..|..||+.... .....+....+...++.+  .+++.++....
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD  432 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD  432 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchh-hhhhhhcCCccccccccc--ccceeEecccc
Confidence            8877665443 33334456655543 4 45556666889999986541 111111112222333333  34555555444


Q ss_pred             CCccccccccCC-ccceeeecCCc
Q 018242          267 RKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       267 ~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      +.     +..++ ..++.++.+..
T Consensus       433 ~~-----Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  433 GT-----IKLWDAEEGECLRTLEG  451 (537)
T ss_pred             cc-----EEEeecccCceeeeecc
Confidence            43     44443 35555555555

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.18  E-value=3.6  Score=23.71  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=25.1

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWH   61 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d   61 (359)
                      .....+|++.|+++.+.++..++.|..||
T Consensus        11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   11 SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45677999999999888899999999986

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.16  E-value=44  Score=34.43  Aligned_cols=25  Identities=12%  Similarity=0.213  Sum_probs=21.1

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATA  131 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~  131 (359)
                      ++.||+++..+.|+.+|.++|+..-
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW  218 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKW  218 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEE
Confidence            7899999877789999999988643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=85.97  E-value=2.7  Score=35.94  Aligned_cols=131  Identities=17%  Similarity=0.157  Sum_probs=58.5

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccc-cccCCcceEEEEe
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK-EHICGRPLGLCFN  104 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~~  104 (359)
                      .+|..++-..=..|++++.|. ||+-..++.+++..+-+..-..+..         +.+    ..+ ...-+....+.++
T Consensus        73 ~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~---------~~~----~~iG~~GW~~f~~vfa~  138 (229)
T PF14517_consen   73 KQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIG---------GSG----KKIGGTGWNDFDAVFAG  138 (229)
T ss_dssp             EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH----------HS----EEEE-SSGGGEEEEEE-
T ss_pred             cccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhh---------ccc----eecccCCCccceEEEeC
Confidence            355555333334899999998 8877778899888764431111100         000    011 1111234567777


Q ss_pred             cCCCeEEEEeCCCcEEEE-eCCCCeEEEEe--ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          105 KTNGDLYIADAYFGLLKV-GPEGGLATAVA--TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       105 ~~~g~l~v~~~~~~i~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      + +|.||+.+..+.+++. .+.++.-+-+.  .............|...++|. ||..++                  .|
T Consensus       139 ~-~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~------------------~G  198 (229)
T PF14517_consen  139 P-NGVLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS------------------NG  198 (229)
T ss_dssp             T-TS-EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E------------------TT
T ss_pred             C-CccEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEEec------------------CC
Confidence            7 8999988855446665 44433211000  000111223456788889999 888832                  45


Q ss_pred             eEEEEeCCC
Q 018242          182 RLMKYDPAT  190 (359)
Q Consensus       182 ~v~~~d~~~  190 (359)
                      .||+..+.+
T Consensus       199 ~lyr~~~p~  207 (229)
T PF14517_consen  199 KLYRGRPPQ  207 (229)
T ss_dssp             EEEEES---
T ss_pred             EEeccCCcc
Confidence            788776654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=85.90  E-value=8.9  Score=32.83  Aligned_cols=159  Identities=13%  Similarity=0.066  Sum_probs=68.9

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~g~l~  111 (359)
                      .+.=..|+..|+|+ +|.-.. +.+++..+.+........            .++  .+-.. =+.-..|.+++ .|.||
T Consensus        33 w~~~~~i~~~P~g~-lY~I~~-~~lY~~~~~~~~~~~~~~------------~~~--~Ig~g~W~~F~~i~~d~-~G~LY   95 (229)
T PF14517_consen   33 WNNFRDIAAGPNGR-LYAIRN-DGLYRGSPSSSGGNTWDS------------GSK--QIGDGGWNSFKFIFFDP-TGVLY   95 (229)
T ss_dssp             -TT-SEEEE-TTS--EEEEET-TEEEEES---STT--HHH------------H-E--EEE-S-GGG-SEEEE-T-TS-EE
T ss_pred             ccccceEEEcCCce-EEEEEC-CceEEecCCccCcccccc------------cCc--ccccCcccceeEEEecC-CccEE
Confidence            34556788889998 555444 377777332110000000            000  11111 01234688888 99999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEE----eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE-
Q 018242          112 IADAYFGLLKVGPEGGLATAV----ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY-  186 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~-  186 (359)
                      ..+....|+|....+......    ...+....-.....+.++++|- ||.-+..                  +.+++. 
T Consensus        96 aV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~d------------------g~~~~~~  156 (229)
T PF14517_consen   96 AVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITPD------------------GRLYRRY  156 (229)
T ss_dssp             EEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEETT------------------E-EEEE-
T ss_pred             EeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcCC------------------CceEEeC
Confidence            887665677775432211111    0111011223456788899998 8888532                  346655 


Q ss_pred             eCCCCcEE------EEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          187 DPATKQVT------VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       187 d~~~~~~~------~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      .|..+.-.      .+. .....+.-|.+++++. ||.. ..++.|+++.
T Consensus       157 ~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~  204 (229)
T PF14517_consen  157 RPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGR  204 (229)
T ss_dssp             --SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES
T ss_pred             CCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccC
Confidence            33322111      111 2222345677888876 7777 4557888764

>PLN02153 epithiospecifier protein

Probab=85.82  E-value=28  Score=31.84  Aligned_cols=120  Identities=9%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------------CcEEEE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------------FGLLKV  122 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------------~~i~~~  122 (359)
                      ..+++||+.+++|+.+....+.              ..+....-+.++..  +++|||....            +.+..|
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~--------------~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEE--------------GGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCC--------------CCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEE
Confidence            3688999999888865421100              00011111233333  6778875321            137789


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCC-ccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSS-QFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~-~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      |+++.+++.+...........-..++ .-+|+ +|+.-... .......     .......+++||+.+.+...+.
T Consensus       165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~-iyv~GG~~~~~~~gG~-----~~~~~~~v~~yd~~~~~W~~~~  233 (341)
T PLN02153        165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGK-IWVVYGFATSILPGGK-----SDYESNAVQFFDPASGKWTEVE  233 (341)
T ss_pred             ECCCCeEeeCCCCCCCCCCCCcceEE-EECCe-EEEEeccccccccCCc-----cceecCceEEEEcCCCcEEecc
Confidence            99988887653211100111112223 24666 88751100 0000000     0001246899999887776554

>PLN02193 nitrile-specifier protein

Probab=85.49  E-value=36  Score=32.83  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=58.0

Q ss_pred             CCeEEEEeCC------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          107 NGDLYIADAY------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       107 ~g~l~v~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ++.||+....      +.+++||+.+.+++.+...........-+.++. -+++ ||+.--...            ....
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~-iYv~GG~~~------------~~~~  293 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEEN-VYVFGGVSA------------TARL  293 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCE-EEEECCCCC------------CCCc
Confidence            6788886321      358999999998876543211111112223333 3455 888621100            0112


Q ss_pred             ceEEEEeCCCCcEEEEeCC--CCCCc---eEEEccCCCEEEEEecC----CCEEEEEEcCCC
Q 018242          181 GRLMKYDPATKQVTVLLGN--LSFPN---GVALSEDGNYILLAETT----SCRILRYWLKTS  233 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~--~~~p~---gia~~~d~~~l~v~~~~----~~~i~~~~~~~~  233 (359)
                      ..+.+||+.+.+...+...  ...+.   .++. .+++ +|+..-.    .+.+++||+..+
T Consensus       294 ~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        294 KTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             ceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCCCCccCceEEEECCCC
Confidence            3588899988776654321  11111   2222 3555 6665432    256899987654

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=85.49  E-value=47  Score=34.94  Aligned_cols=162  Identities=19%  Similarity=0.207  Sum_probs=103.3

Q ss_pred             EEeeCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+-..+...|++++.|-- +..+|++.....+...+.+... +...                  ..... ..|..+++++
T Consensus       473 ~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~-~~vl------------------~~~~l-~~~r~~~v~p  532 (877)
T KOG1215|consen  473 ELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS-RKVL------------------VSKDL-DLPRSIAVDP  532 (877)
T ss_pred             eEeccCccccCcEEEEeccCCceecccCCceeEEEEccCCc-eeEE------------------EecCC-CCccceeecc
Confidence            344556789999999964 4568888888888888866542 2221                  11222 5678899999


Q ss_pred             CCCeEEEEeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          106 TNGDLYIADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       106 ~~g~l~v~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..+.++..++..  .|.|-..++.....+...    ....|++++.|-..+++|..|....                -.+
T Consensus       533 ~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~----~~~~p~glt~d~~~~~~yw~d~~~~----------------~~i  592 (877)
T KOG1215|consen  533 EKGLMFWTDWGQPPRIERASLDGSERAVLVTN----GILWPNGLTIDYETDRLYWADAKLD----------------YTI  592 (877)
T ss_pred             ccCeeEEecCCCCchhhhhcCCCCCceEEEeC----CccCCCcceEEeecceeEEEcccCC----------------cce
Confidence            889999988753  366666665544443321    2468899999976666999865421                124


Q ss_pred             EEEeCCCCcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          184 MKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       184 ~~~d~~~~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ...+-++..-+ ........|.+++...+  .+||++.....+.+...
T Consensus       593 ~~~~~~g~~r~~~~~~~~~~p~~~~~~~~--~iyw~d~~~~~~~~~~~  638 (877)
T KOG1215|consen  593 ESANMDGQNRRVVDSEDLPHPFGLSVFED--YIYWTDWSNRAISRAEK  638 (877)
T ss_pred             eeeecCCCceEEeccccCCCceEEEEecc--eeEEeeccccceEeeec
Confidence            44444432222 22344567888887655  48999988776666554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.39  E-value=35  Score=33.06  Aligned_cols=120  Identities=17%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             EEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC-CcceEEEEecCCCeEEEEeC--
Q 018242           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC-GRPLGLCFNKTNGDLYIADA--  115 (359)
Q Consensus        39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~~~~~~g~l~v~~~--  115 (359)
                      +...++|. +++... ..+..+|..+.....+..                   .... ..-|.+...+ +|++++...  
T Consensus       153 ~~~l~nG~-ll~~~~-~~~~e~D~~G~v~~~~~l-------------------~~~~~~~HHD~~~l~-nGn~L~l~~~~  210 (477)
T PF05935_consen  153 FKQLPNGN-LLIGSG-NRLYEIDLLGKVIWEYDL-------------------PGGYYDFHHDIDELP-NGNLLILASET  210 (477)
T ss_dssp             EEE-TTS--EEEEEB-TEEEEE-TT--EEEEEE---------------------TTEE-B-S-EEE-T-TS-EEEEEEET
T ss_pred             eeEcCCCC-EEEecC-CceEEEcCCCCEEEeeec-------------------CCcccccccccEECC-CCCEEEEEeec
Confidence            66778888 444343 678888887653333321                   1100 1124566677 666554322  


Q ss_pred             ------------CCcEEEEeCCCCeEEEEee---cC---CC-----------------ccccccceEEEeCCCCEEEEEe
Q 018242          116 ------------YFGLLKVGPEGGLATAVAT---QS---EG-----------------IPFRFCNSLDIDQSTGIIYFTD  160 (359)
Q Consensus       116 ------------~~~i~~~~~~~~~~~~~~~---~~---~~-----------------~~~~~~~~l~~d~~g~~l~v~d  160 (359)
                                  .+.|+.+| .+|++.....   ..   ..                 ..-..+|++..++.+..|.++.
T Consensus       211 ~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs  289 (477)
T PF05935_consen  211 KYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS  289 (477)
T ss_dssp             TEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE
T ss_pred             ccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc
Confidence                        23588899 6666543211   11   00                 0113568899998434388873


Q ss_pred             CCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC
Q 018242          161 SSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG  198 (359)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~  198 (359)
                      ..                 ...|+++|..++++..+..
T Consensus       290 R~-----------------~s~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  290 RH-----------------QSAVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             TT-----------------T-EEEEEE-TTS-EEEEES
T ss_pred             Cc-----------------ceEEEEEECCCCcEEEEeC
Confidence            32                 3479999988888887754

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.93  E-value=30  Score=31.37  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=41.8

Q ss_pred             CCeEEEEeCC------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          107 NGDLYIADAY------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       107 ~g~l~v~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +++||+....      +.+.+||+++.+++.+.. .+..+  .....++.-+++ ||+---..             ....
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~~--r~~~~~~~~~~~-iYv~GG~~-------------~~~~  185 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPGEP--RVQPVCVKLQNE-LYVFGGGS-------------NIAY  185 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCCCC--CCcceEEEECCE-EEEEcCCC-------------Cccc
Confidence            6788886321      248899999988876532 11111  112233344666 99872110             0001


Q ss_pred             ceEEEEeCCCCcEEEEe
Q 018242          181 GRLMKYDPATKQVTVLL  197 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~  197 (359)
                      ..+++||+++++.+.+.
T Consensus       186 ~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       186 TDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             cceEEEecCCCeeEECC
Confidence            24678999887766543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=84.83  E-value=3.2  Score=38.79  Aligned_cols=120  Identities=11%  Similarity=0.044  Sum_probs=64.7

Q ss_pred             cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC
Q 018242          142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT  221 (359)
Q Consensus       142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~  221 (359)
                      ..|..+....+|+++.++                  +..|.|..+|-.++.+..-..-......+.|-...+  |++-..
T Consensus       130 FGPY~~~ytrnGrhlllg------------------GrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq--~~AVAQ  189 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLG------------------GRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ--FFAVAQ  189 (545)
T ss_pred             cCCeeeeecCCccEEEec------------------CCccceeeeecccceeeeeeehhhhhhhhhhhcchH--HHHhhh
Confidence            467888899999988777                  456788888877766543223333445555554443  233334


Q ss_pred             CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCc
Q 018242          222 SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  289 (359)
Q Consensus       222 ~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  289 (359)
                      ...+++||-.+..+...+   .. .....+.+=|...|.++....+..    -+.+-..|++...+-+
T Consensus       190 K~y~yvYD~~GtElHClk---~~-~~v~rLeFLPyHfLL~~~~~~G~L----~Y~DVS~GklVa~~~t  249 (545)
T KOG1272|consen  190 KKYVYVYDNNGTELHCLK---RH-IRVARLEFLPYHFLLVAASEAGFL----KYQDVSTGKLVASIRT  249 (545)
T ss_pred             hceEEEecCCCcEEeehh---hc-CchhhhcccchhheeeecccCCce----EEEeechhhhhHHHHc
Confidence            566777764433222211   11 012234444555566666555531    1222346666665543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.82  E-value=46  Score=33.58  Aligned_cols=178  Identities=10%  Similarity=0.068  Sum_probs=93.5

Q ss_pred             CCceEEEccC-CCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..+.+.|.+. -.++..+..+|.|-.||..... ..++                     .......+.+.|+|..++.|+
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~---------------------~~nSESiRDV~fsp~~~~~F~  193 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF---------------------RSNSESIRDVKFSPGYGNKFA  193 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeecccccccc---------------------cccchhhhceeeccCCCceEE
Confidence            5667888875 4557778888999999986542 1111                     112233567888887888898


Q ss_pred             EeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +...+| +.++|+..-.. .... ... ....+.-+-++|++  -|++.-+                ++..|-.||-.+.
T Consensus       194 s~~dsG~lqlWDlRqp~r-~~~k-~~A-H~GpV~c~nwhPnr--~~lATGG----------------RDK~vkiWd~t~~  252 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDR-CEKK-LTA-HNGPVLCLNWHPNR--EWLATGG----------------RDKMVKIWDMTDS  252 (839)
T ss_pred             EecCCceEEEeeccCchh-HHHH-hhc-ccCceEEEeecCCC--ceeeecC----------------CCccEEEEeccCC
Confidence            876666 66788753210 0000 000 11123346678954  5888433                3444545554433


Q ss_pred             cEEE--EeCCCCCCceEEEccCCCEEEEEe--cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC
Q 018242          192 QVTV--LLGNLSFPNGVALSEDGNYILLAE--TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  255 (359)
Q Consensus       192 ~~~~--~~~~~~~p~gia~~~d~~~l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  255 (359)
                      +...  .........-+.+=|+..+.+.+.  ..+..|.+||+..+... ...+..-.....+|+++.
T Consensus       253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP-~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  253 RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP-YATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             CccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc-ceeeeccCccccceeccC
Confidence            2221  112222234455656554333222  22457999998765432 222322222344566654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.51  E-value=5.4  Score=22.88  Aligned_cols=32  Identities=31%  Similarity=0.316  Sum_probs=23.7

Q ss_pred             eCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      .......+.++++|+++ .+++...++.|..||
T Consensus         8 ~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            34445678999999987 566666778998885

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.31  E-value=45  Score=32.88  Aligned_cols=148  Identities=13%  Similarity=0.038  Sum_probs=84.1

Q ss_pred             cCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEE
Q 018242           43 ALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLL  120 (359)
Q Consensus        43 ~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~  120 (359)
                      +.-+-+.++..+..|..+|.++.+ ++.|                     .......+.|++.| ..-.+++...+ -|-
T Consensus        65 aRknWiv~GsDD~~IrVfnynt~ekV~~F---------------------eAH~DyIR~iavHP-t~P~vLtsSDDm~iK  122 (794)
T KOG0276|consen   65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTF---------------------EAHSDYIRSIAVHP-TLPYVLTSSDDMTIK  122 (794)
T ss_pred             eccceEEEecCCceEEEEecccceeeEEe---------------------eccccceeeeeecC-CCCeEEecCCccEEE
Confidence            334425567888999999998863 4444                     23333456788888 44444443333 355


Q ss_pred             EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-EEEEeCC
Q 018242          121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-VTVLLGN  199 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~~~  199 (359)
                      .++.+.. +.. ...+.+ ....+..+++.|+...-|++-+                 .+.+|-+|...... ..++..+
T Consensus       123 lW~we~~-wa~-~qtfeG-H~HyVMqv~fnPkD~ntFaS~s-----------------LDrTVKVWslgs~~~nfTl~gH  182 (794)
T KOG0276|consen  123 LWDWENE-WAC-EQTFEG-HEHYVMQVAFNPKDPNTFASAS-----------------LDRTVKVWSLGSPHPNFTLEGH  182 (794)
T ss_pred             EeeccCc-eee-eeEEcC-cceEEEEEEecCCCccceeeee-----------------ccccEEEEEcCCCCCceeeecc
Confidence            5666643 221 111222 2247788999988664565522                 23334444433211 1233455


Q ss_pred             CCCCceEEEccCCC-EEEEEecCCCEEEEEEcCC
Q 018242          200 LSFPNGVALSEDGN-YILLAETTSCRILRYWLKT  232 (359)
Q Consensus       200 ~~~p~gia~~~d~~-~l~v~~~~~~~i~~~~~~~  232 (359)
                      ..+.|-+.+.+.|. =.+++..++..+.+||.+.
T Consensus       183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             ccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            56778888876443 3567788889999999653

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=84.03  E-value=32  Score=30.99  Aligned_cols=39  Identities=13%  Similarity=0.026  Sum_probs=28.3

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEe
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA   71 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~   71 (359)
                      .....+|..+++|.+|+.+-....|+++++.++++....
T Consensus       143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l  181 (299)
T PF14269_consen  143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL  181 (299)
T ss_pred             ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence            345558888999995555555589999999988766543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.94  E-value=11  Score=37.54  Aligned_cols=175  Identities=13%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      -+++.++.+..++-.+...|.|-.||+.... +++                     +....-.+..+.|.| =+..+.+-
T Consensus        73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt---------------------Ltgh~~~~~sv~f~P-~~~~~a~g  130 (825)
T KOG0267|consen   73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT---------------------LTGHLLNITSVDFHP-YGEFFASG  130 (825)
T ss_pred             ceeeecCcchhhhcccccCCceeeeehhhhhhhhh---------------------hhccccCcceeeecc-ceEEeccc
Confidence            4577788887767788888999999998652 111                     111111233455666 44443221


Q ss_pred             CC-CcEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          115 AY-FGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       115 ~~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      .. ..+..+|.+ .|-...+ .   + ....++-+.+.|+|+  |+.+.+.                ...+-.+|...|+
T Consensus       131 Stdtd~~iwD~Rk~Gc~~~~-~---s-~~~vv~~l~lsP~Gr--~v~~g~e----------------d~tvki~d~~agk  187 (825)
T KOG0267|consen  131 STDTDLKIWDIRKKGCSHTY-K---S-HTRVVDVLRLSPDGR--WVASGGE----------------DNTVKIWDLTAGK  187 (825)
T ss_pred             cccccceehhhhccCceeee-c---C-CcceeEEEeecCCCc--eeeccCC----------------cceeeeecccccc
Confidence            11 124445543 2222221 1   1 122455678899998  7775432                2345566665454


Q ss_pred             EEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---CCCCCceEECCCCCEEE
Q 018242          193 VTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       193 ~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~lwv  261 (359)
                      +.. +...-.....+.++|. +.|.-....+..+..|++.     +++.+...   ...+.+..++++|....
T Consensus       188 ~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dle-----tfe~I~s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  188 LSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLE-----TFEVISSGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             cccccccccccccccccCch-hhhhccCCCCceeeeeccc-----eeEEeeccCCccCCceeeeecCCceeee
Confidence            432 1111111223334443 2355555566667667643     13333221   12355677888886554

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=83.40  E-value=1.2  Score=26.21  Aligned_cols=20  Identities=15%  Similarity=0.308  Sum_probs=16.6

Q ss_pred             CCCceEECCCCCEEEEEecC
Q 018242          247 FPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       247 ~p~~i~~d~~G~lwv~~~~~  266 (359)
                      .+.+|++|++|++|++....
T Consensus        14 ~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eEEEEEECCCCCEEEEEeec
Confidence            37789999999999977654

SBBP stands for Seven Bladed Beta Propeller.

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=82.50  E-value=8.5  Score=35.43  Aligned_cols=114  Identities=14%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccc--cccccCCcceEEEEecCCCeEEE-
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHA--AKEHICGRPLGLCFNKTNGDLYI-  112 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~gi~~~~~~g~l~v-  112 (359)
                      -.++.++++|.++-.+..++.++.|.+...... ..    ..+.-.++ +.-..  ........+.-++..+ +++..+ 
T Consensus        68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~~----d~e~~~~k-e~w~v~k~lr~h~~diydL~Ws~-d~~~l~s  140 (434)
T KOG1009|consen   68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-DA----DTEADLNK-EKWVVKKVLRGHRDDIYDLAWSP-DSNFLVS  140 (434)
T ss_pred             eEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-cc----cchhhhCc-cceEEEEEecccccchhhhhccC-CCceeee
Confidence            347889999997777777788999977631100 00    00000000 00000  0111123456677777 444444 


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCC
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS  162 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~  162 (359)
                      +...+.++.+|...|++.....    .....++++++||-++  ||...+
T Consensus       141 ~s~dns~~l~Dv~~G~l~~~~~----dh~~yvqgvawDpl~q--yv~s~s  184 (434)
T KOG1009|consen  141 GSVDNSVRLWDVHAGQLLAILD----DHEHYVQGVAWDPLNQ--YVASKS  184 (434)
T ss_pred             eeccceEEEEEeccceeEeecc----ccccccceeecchhhh--hhhhhc
Confidence            4445568888988887654322    1235788999999887  565444

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=82.28  E-value=44  Score=31.29  Aligned_cols=134  Identities=11%  Similarity=0.096  Sum_probs=69.0

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------------CCcEEEE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------------YFGLLKV  122 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------------~~~i~~~  122 (359)
                      +-+|.||.++.+|+.+..+.                 .+.....+.++..+ .+.||+-..            +..+..+
T Consensus        98 ndLy~Yn~k~~eWkk~~spn-----------------~P~pRsshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~f  159 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPN-----------------APPPRSSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLF  159 (521)
T ss_pred             eeeeEEeccccceeEeccCC-----------------CcCCCccceeEEec-cCeEEEeccccCCcchhhhhhhhheeee
Confidence            67889999999998875321                 01112234556666 568887431            2248888


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF  202 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~  202 (359)
                      +..+++++.+...... ....-+.|++-..-- |.++-....  .+.+.       ...-||.||.++-+...+......
T Consensus       160 d~~trkweql~~~g~P-S~RSGHRMvawK~~l-ilFGGFhd~--nr~y~-------YyNDvy~FdLdtykW~Klepsga~  228 (521)
T KOG1230|consen  160 DLKTRKWEQLEFGGGP-SPRSGHRMVAWKRQL-ILFGGFHDS--NRDYI-------YYNDVYAFDLDTYKWSKLEPSGAG  228 (521)
T ss_pred             eeccchheeeccCCCC-CCCccceeEEeeeeE-EEEcceecC--CCceE-------EeeeeEEEeccceeeeeccCCCCC
Confidence            9999998877542211 112234454443322 333311000  00111       123588999886544444333323


Q ss_pred             C---ceEEE--ccCCCEEEE
Q 018242          203 P---NGVAL--SEDGNYILL  217 (359)
Q Consensus       203 p---~gia~--~~d~~~l~v  217 (359)
                      |   .|.+|  +|++..+++
T Consensus       229 PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  229 PTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             CCCCCcceEEecCCCcEEEE
Confidence            3   35544  567774333

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=81.91  E-value=1.1  Score=32.53  Aligned_cols=21  Identities=24%  Similarity=0.233  Sum_probs=13.8

Q ss_pred             CCCchhHHHHHHHHHHHhhhc
Q 018242            1 MNSSLSFIAKSIVIFLFINSS   21 (359)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~   21 (359)
                      |.+|.+++|+++++++++.|+
T Consensus         1 MaSK~~llL~l~LA~lLlisS   21 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISS   21 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHh
Confidence            787777777666666555544

Some of them may be involved in resistance to environmental stress [].

>PLN02193 nitrile-specifier protein

Probab=80.80  E-value=56  Score=31.54  Aligned_cols=110  Identities=10%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~  128 (359)
                      ..+++||+.+++|+.+.....                .+.....+.++..  +++||+....      ..+..||+.+.+
T Consensus       244 ndv~~yD~~t~~W~~l~~~~~----------------~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~  305 (470)
T PLN02193        244 NGFYSFDTTTNEWKLLTPVEE----------------GPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKK  305 (470)
T ss_pred             ccEEEEECCCCEEEEcCcCCC----------------CCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence            468999999988887541100                0011112333333  6788886422      237889999888


Q ss_pred             EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      ++.+...........-..+++ -+++ +|+.--..             +.....+++||+++.+...+.
T Consensus       306 W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~-------------g~~~~dv~~yD~~t~~W~~~~  359 (470)
T PLN02193        306 WFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFN-------------GCEVDDVHYYDPVQDKWTQVE  359 (470)
T ss_pred             EEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCC-------------CCccCceEEEECCCCEEEEec
Confidence            876532111101111122332 3567 88762110             011246999999988776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	359
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		1e-51
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		1e-51
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-49

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 45/322 (13%)
Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
           +  P S  FD+  +G YT V DGR+IK+      ++ FA  SP  N+  CE + +   A 
Sbjct: 18  SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 74
Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
           K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +D
Sbjct: 75  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q TGI+YFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL  L  P G  +S 
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
           D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  G FWV         
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 244
Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
                                    SS  +L GN         ++  E GN+LE++    
Sbjct: 245 -------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 279
Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
                   +++E DG L+IG++
Sbjct: 280 PFAGEHFEQIQEHDGLLYIGTL 301

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score =  200 bits (508), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 45/322 (13%)
Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
           +  P S  FD+  +G YT V DGR+IK+      ++ FA  SP  N+  CE + +   A 
Sbjct: 9   SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 65
Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
           K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +D
Sbjct: 66  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q TGI+YFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL  L  P G  +S 
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
           D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  G FWV         
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 235
Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
                                    SS  +L GN         ++  E GN+LE++    
Sbjct: 236 -------------------------SSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPP 270
Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
                   +++E DG L+IG++
Sbjct: 271 PFAGEHFEQIQEHDGLLYIGTL 292

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 45/322 (13%)
Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NRDGCEGAYEYDHAA 90
           +  P S  FD+  +G YT V DGR+ K+      ++ FA  SP  N+  CE + +   A 
Sbjct: 18  SYAPNSFTFDSTNKGFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTD---AE 74
Query: 91  KEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID 150
           K  +CGR   + +N  N   YI D Y+ L  VG EGG AT +AT  +G+PF++  ++ +D
Sbjct: 75  KRPLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 134
Query: 151 QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE 210
           Q TGI+YFTD S+ +  R    +  + DKTGRL KYDP+TK+ T+L   L  P G  +S 
Sbjct: 135 QRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSA 194
Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI 270
           D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  G FWV         
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV--------- 244
Query: 271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILEEIG 325
                                    SS  +L GN         ++  E GN+LE++    
Sbjct: 245 -------------------------SSSEELDGNXHGRVDPKGIKFDEFGNILEVIPLPP 279
Query: 326 RKMWRSISEVEEKDGNLWIGSV 347
                   +++E DG L+IG++
Sbjct: 280 PFAGEHFEQIQEHDGLLYIGTL 301

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	359
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-105
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	5e-32
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	3e-31
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	4e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-14
2p4o_A	306	Hypothetical protein; putative lactonase, structur	2e-06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	7e-04
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	5e-14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	3e-04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	4e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	5e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	7e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	9e-08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-07
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	3e-06
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	9e-04
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	7e-06
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	9e-06
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	1e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	3e-04
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	3e-04
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	7e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  310 bits (794), Expect = e-105
 Identities = 112/341 (32%), Positives = 171/341 (50%), Gaps = 32/341 (9%)

Query: 20  SSTQGVVQYQIEGAI-GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRD 78
            S+  + +  IE     P S  FD+  +G YT V DGR+IK+      ++ FA  SP  +
Sbjct: 4   LSSPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN 63

Query: 79  GCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEG 138
                   D   K  +CGR   + +N  N  LYI D Y+ L  VG EGG AT +AT  +G
Sbjct: 64  KAFCENSTDAE-KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDG 122

Query: 139 IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG 198
           +PF++  ++ +DQ TGI+YFTD S+ +  R    ++ + DKTGRL+KYDP+TK+ T+LL 
Sbjct: 123 VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK 182

Query: 199 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG 258
            L  P G  +S D +++L+AE  S +I++YWL+  K GT E++ ++P  P NIKR+  G 
Sbjct: 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241

Query: 259 FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVL 318
           FWV       G     +                                 ++  E GN+L
Sbjct: 242 FWVSSSEELDGNMHGRVD-----------------------------PKGIKFDEFGNIL 272

Query: 319 EILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS 359
           E++            +++E DG L+IG++     G+  Y  
Sbjct: 273 EVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  122 bits (306), Expect = 5e-32
 Identities = 59/328 (17%), Positives = 100/328 (30%), Gaps = 42/328 (12%)

Query: 33  AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE 92
            I P  LAF +      +G+    I+ +  D+   +     +  ++      E      +
Sbjct: 56  EILPNGLAFIS------SGLKYPGIMSFDPDKSGKILLMDLN-EKEPAVSELEIIGNTLD 108

Query: 93  HICGRPLGLCFNKT-NGDLYI-------ADAYFGLLKVGPEGGLATAVATQSEGIPFRFC 144
                P G+      +  +Y+       + +   + K   E      + T          
Sbjct: 109 ISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI-RHKLLPSV 167

Query: 145 NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN 204
           N +         Y T+             +  G     +  Y P    V V+     F N
Sbjct: 168 NDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFAN 224

Query: 205 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR-GGFWVGI 263
           G+ +S DG Y+ +AE  + +I  Y    +   T   V       DNI   P  G  WVG 
Sbjct: 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284

Query: 264 HSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE 323
           H     I       P           ++++I   L             SE+  V  +  E
Sbjct: 285 HPNGMRIFFYDAENP--------PGSEVLRIQDIL-------------SEEPKVTVVYAE 323

Query: 324 IGRKMWRSISEVEEKDGNLWIGSVNMPY 351
            G  + +  +      G L IG+V    
Sbjct: 324 NGTVL-QGSTVAAVYKGKLLIGTVFHKA 350

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score =  119 bits (300), Expect = 3e-31
 Identities = 47/250 (18%), Positives = 77/250 (30%), Gaps = 36/250 (14%)

Query: 31  EGAIGPESLAFDALG-------EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGA 83
           E   G E   FD  G       E    G   G I++      +     +   N       
Sbjct: 15  EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN------- 67

Query: 84  YEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRF 143
                       G P G   ++    L++AD   GLL V  +G         SEG   + 
Sbjct: 68  ---------GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQG 118

Query: 144 CNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP 203
           CN    D   G ++ T  +   +           +K G +  +     Q+  +     FP
Sbjct: 119 CNDCAFD-YEGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFP 174

Query: 204 NGVALSEDGN----YILLAETTSCRILRYWLKTSKAGT-----IEIVAQLPGFPDNIKRS 254
           NG+A+    +     +++AET + ++  Y +K             I     G  D +   
Sbjct: 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234

Query: 255 PRGGFWVGIH 264
                 V   
Sbjct: 235 EDNNLLVANW 244

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 51/246 (20%)

Query: 37  ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGA-YEYDHAAKEHI- 94
           E        EG            + +  +  L         D  EG  ++ +   KE   
Sbjct: 39  EISKKGLQLEGLN----------FDRQGQ--LFLL------DVFEGNIFKINPETKEIKR 80

Query: 95  -----CGRPLGLCFNKTNGDLYIAD-----AYFGLLKVGPEGGLATAVATQSEGIPFRFC 144
                   P  +  +K +G L++       +  G+      G     +            
Sbjct: 81  PFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--TAYCI 137

Query: 145 NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN 204
           + +  D S G  YFTD               S +  G +    P  + VT ++ N+S  N
Sbjct: 138 DDMVFD-SKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVAN 185

Query: 205 GVALSEDGNYILLAETTSCRILRYWL----KTSKAGTIEIVAQL--PGFPDNIKRSPRGG 258
           G+ALS D   + + ETT+ R+ R  L     T +     I         PD+        
Sbjct: 186 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 245

Query: 259 FWVGIH 264
            +V ++
Sbjct: 246 LYVAMY 251

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 73.1 bits (179), Expect = 1e-14
 Identities = 33/167 (19%), Positives = 50/167 (29%), Gaps = 12/167 (7%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
           G+  GL F   NGDL         + V         V T        F N +    S   
Sbjct: 72  GKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQ 129

Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYI 215
               DS            I     +G +    P   +         FP    L   GN++
Sbjct: 130 YLTADSYRGAIWL-----IDVVQPSGSIWLEHPMLARSN---SESVFPAANGLKRFGNFL 181

Query: 216 LLAETTSCRILRYWLKTS-KAGTIEIVAQLPGFPDNIKRSPRGGFWV 261
            ++ T    +LR  + ++ K G  EI  +     D+      G  + 
Sbjct: 182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN-IDDFAFDVEGNLYG 227

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 172 SVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 231
           ++ ++  + G ++   P      +        +G+A + +G+ ++     +  I    L 
Sbjct: 44  TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLV 101

Query: 232 TSKAGTIEIVAQLP--GFPDNIKRSPRGGFWVG 262
            S  GT+E +  LP   F + I       +   
Sbjct: 102 KSD-GTVETLLTLPDAIFLNGITPLSDTQYLTA 133

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 188 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF 247
            A  ++       +F   +A + DG  I +       I+      +  G  +I A + G 
Sbjct: 19  LAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSI----TPDGNQQIHATVEGK 73

Query: 248 PDNIKRSPRGGFWV 261
              +  +  G    
Sbjct: 74  VSGLAFTSNGDLVA 87

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 70.9 bits (174), Expect = 5e-14
 Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 9/173 (5%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
               G   +     L   +     +      G A  +  +  G      N L +    G 
Sbjct: 86  AFTNGNAVDA-QQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVA-RDGA 143

Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYI 215
           I+FTD     ++ +             + +  P        + +L  PNG+A S D   +
Sbjct: 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-PLQRMADLDHPNGLAFSPDEQTL 202

Query: 216 LLAETTSCRILRYWLK--TSKAGTI---EIVAQL-PGFPDNIKRSPRGGFWVG 262
            +++T         +     + G +      A +  G PD       G  W  
Sbjct: 203 YVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS 255

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 181 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIE- 239
            R++ +      V VLL   +F NG A+      ++  E     I R        G    
Sbjct: 67  RRVLGWREDGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD----ADGQAHL 120

Query: 240 IVAQLPGFPDN----IKRSPRGGFWVG 262
           +V +  G   N    +  +  G  W  
Sbjct: 121 LVGRYAGKRLNSPNDLIVARDGAIWFT 147

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 11/172 (6%)

Query: 96  GRPLGLCFNKTNGDLYIAD-AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
               G C NK  G L         L +    GG   ++A   EG      N + +    G
Sbjct: 69  HHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDG 126

Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNY 214
            ++F+D +    +               + +  P    ++  + +   PNG+A    GN 
Sbjct: 127 SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNL 185

Query: 215 ILLAETTSCRILRYWLKTSKAGTIE----IVAQLPGFPDNIKRSPRGGFWVG 262
            L+++T      RY L     G  E         PG  D ++    G  W  
Sbjct: 186 -LVSDTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 32/170 (18%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
            + + L  +  +G+++  +     + ++  +G +        +  P+     +      G
Sbjct: 57  AKVMCLTISS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY----GITEG-PNG 110

Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGN 213
            I+FT+ +                   R+ +     K     L    S+P+ + L  D  
Sbjct: 111 DIWFTEMNG-----------------NRIGRITDDGKIREYELPNKGSYPSFITLGSDNA 153

Query: 214 YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF--PDNIKRSPRGGFWV 261
            +   E  +  I R     +++G I           P  I +      W 
Sbjct: 154 -LWFTENQNNAIGRI----TESGDITEFKIPTPASGPVGITKGNDDALWF 198

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 21/165 (12%), Positives = 51/165 (30%), Gaps = 44/165 (26%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
             P G+     NGD++  +     + ++  +G +           P    + + +  S  
Sbjct: 99  SAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYP----SFITLG-SDN 152

Query: 155 IIYFTDSSSQFQRRNHISVI-LSGDKT-----------------------------GRLM 184
            ++FT++ +     N I  I  SGD T                              ++ 
Sbjct: 153 ALWFTENQN-----NAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207

Query: 185 KYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRY 228
           +   + +     +    + P+ +      + +   E  + +I R 
Sbjct: 208 RITTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRL 251

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 16/146 (10%), Positives = 41/146 (28%), Gaps = 31/146 (21%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
             P+G+     +  L+  +     + ++   G +           P      +    +  
Sbjct: 183 SGPVGITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHA----ITAG-AGI 236

Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGN 213
            ++FT+  +                  ++ +           +    + P+G+    DG 
Sbjct: 237 DLWFTEWGA-----------------NKIGRLTSNNIIEEYPIQIKSAEPHGICF--DGE 277

Query: 214 YILLAETTSCRILRYWLKTSKAGTIE 239
            I  A     +I +  L       +E
Sbjct: 278 TIWFAMECD-KIGKLTLIK---DNME 299

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 30/171 (17%), Positives = 52/171 (30%), Gaps = 34/171 (19%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
            + + L  +   GD++  +     + K+  +GG       Q +  P+     +    + G
Sbjct: 62  AKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY----GITEGLN-G 115

Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGN 213
            I+FT  +                   R+ K           L    S+P  + L  D  
Sbjct: 116 DIWFTQLNG-----------------DRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158

Query: 214 YILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWV 261
            +   E  +  I R     +  G +E    LP     P  I     G  W 
Sbjct: 159 -LWFTENQNNSIGRI----TNTGKLEEYP-LPTNAAAPVGITSGNDGALWF 203

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 16/136 (11%), Positives = 42/136 (30%), Gaps = 30/136 (22%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG 154
             P+G+     +G L+  +     + ++   G ++          P     ++       
Sbjct: 188 AAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPH----AITAG-KNS 241

Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGN 213
            I+FT+  +                  ++ +           L    + P+G+   +DG+
Sbjct: 242 EIWFTEWGA-----------------NQIGRITNDNTIQEYQLQTENAEPHGITFGKDGS 284

Query: 214 -YILLAETTSCRILRY 228
            +        C+I + 
Sbjct: 285 VWF----ALKCKIGKL 296

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 25/113 (22%)

Query: 152 STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-LSFPNGVALSE 210
             G ++FT   +                  ++   D + +     +    +    + +S 
Sbjct: 29  EDGKVWFTQHKA-----------------NKISSLDQSGRIKEFEVPTPDAKVMCLIVSS 71

Query: 211 DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF--PDNIKRSPRGGFWV 261
            G+ I   E  + +I +     SK G             P  I     G  W 
Sbjct: 72  LGD-IWFTENGANKIGKL----SKKGGFTEYPLPQPDSGPYGITEGLNGDIWF 119

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 26/134 (19%)

Query: 97  RPLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
            P G+  +  +G++Y+ D     ++K+  E      +              + +D   G 
Sbjct: 151 DPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTD----ITAPWGIAVD-EAGT 204

Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-LSFPNGVALSEDGNY 214
           +Y T+ +       +           +++K    +   TVL    L+ P  VA+  D   
Sbjct: 205 VYVTEHN------TN-----------QVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT- 246

Query: 215 ILLAETTSCRILRY 228
           + +A+  + R+++ 
Sbjct: 247 VYVADRGNDRVVKL 260

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 30/168 (17%)

Query: 97  RPLGLCFNKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI 155
            P G+  +   G++Y+      G +     G   T V   +          L +D   G 
Sbjct: 25  SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG---LYQPQGLAVD-GAGT 79

Query: 156 IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYI 215
           +Y TD +      N             +     +  Q  +    L++P G+A+   G  +
Sbjct: 80  VYVTDFN------NR-----------VVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-V 121

Query: 216 LLAETTSCRILRYWLKTSKAGTIEIVAQLPGF--PDNIKRSPRGGFWV 261
            +A+  + R+++     +     + V    G   PD +     G  +V
Sbjct: 122 YVADRGNNRVVKL----AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV 165

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 22/159 (13%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIP-FRFCNSLDIDQSTG 154
            +   +C+      + I +      +         +       +   + CN  +     G
Sbjct: 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPING 238

Query: 155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDG 212
            +YF   +                  G++ +YD  T++ T L  + +  +   +     G
Sbjct: 239 ELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281

Query: 213 NYILLAETTSCRILR--YWLKTSKAGTIEIVAQLPGFPD 249
           NY  +       ILR  Y  KT +  T  IV    G  D
Sbjct: 282 NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKD 320

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 44/158 (27%)

Query: 98  PLGLCFNKTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIP---------FRFCNSL 147
           P  + +   + + Y++D     + K+ P+G       + ++            F   N +
Sbjct: 270 PYLIYYFV-DSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGM 328

Query: 148 DIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-------- 199
            +D   G  Y  D         +            L K D     V+ + G         
Sbjct: 329 TVD-EDGNFYIVDGFK-----GY-----------CLRKLDILDGYVSTVAGQVDVASQID 371

Query: 200 -------LSFPNGVALSEDGNYILLAETTSCRILRYWL 230
                   ++P  +    +G    +AE     I +Y +
Sbjct: 372 GTPLEATFNYPYDICYDGEGG-YWIAEAWGKAIRKYAV 408

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 24/174 (13%), Positives = 44/174 (25%), Gaps = 40/174 (22%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQS 152
           G+   +  ++T   LY  D+     +   +    T +                 +     
Sbjct: 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF-V 277

Query: 153 TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN------------- 199
               Y +D +                    + K  P   +     G+             
Sbjct: 278 DSNFYMSDQN------LS-----------SVYKITP-DGECEWFCGSATQKTVQDGLREE 319

Query: 200 --LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNI 251
              + PNG+ + EDGN   + +      LR        G +  VA        I
Sbjct: 320 ALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKL--DILDGYVSTVAGQVDVASQI 370

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 19/177 (10%), Positives = 53/177 (29%), Gaps = 45/177 (25%)

Query: 96  GRPLGLCFNKTNGDLYIADAYFG--LLKVGPEGGLATAVATQSEGIP-----FRFCNSLD 148
            +P  +    + G ++++D Y    +++  P G   T    +S G       F   +SL 
Sbjct: 143 CQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLA 202

Query: 149 IDQSTGIIYFTDSSS---------------------------QFQRRNHISVILSGD--- 178
           +      +   D  +                                      ++G    
Sbjct: 203 LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYF 262

Query: 179 ---KTGRLMKYDPATKQVTVLLGN----LSFPNGVALSEDGNYILLAETTSCRILRY 228
              +  +    + ++ ++  +          P+ +  SEDG  + + +  +  + ++
Sbjct: 263 GDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTNTVWKF 318

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 26/141 (18%)

Query: 97  RPLGLCFNKTNGDLYIADAYFGLLKV---GPEGGLATAVATQSEGIPFRFCNSLDIDQST 153
            P G+  +   G+LY  D      K+     +G     +A  + G+P    N L  D  +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP----NGLTFDAFS 178

Query: 154 GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN 213
             + + D+                  T R    +PA      +L  L +P  V     G 
Sbjct: 179 SQLCWVDA-----------------GTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGK 219

Query: 214 YILLAETTSCRILRYWLKTSK 234
            +   +  +  ++   L  SK
Sbjct: 220 NLYYTDWKTNSVIAMDLAISK 240

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Length = 331

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 21/207 (10%), Positives = 50/207 (24%), Gaps = 31/207 (14%)

Query: 16  LFINSSTQGVVQYQIEGAIGPESLAFDALGEGPY--TGVSDGRIIKWHQDQRRWLHFART 73
              +      +   I        +A    G G       S   + ++  D    L     
Sbjct: 111 QSYSFLKNKFIS-TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169

Query: 74  SPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKV--GPEGGLATA 131
                G                 RP  + F       ++A+     + +         T 
Sbjct: 170 EFISGG----------------TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213

Query: 132 VATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK 191
           +             ++ + +    +Y    S+       +        +G L        
Sbjct: 214 LNAVGTN---NLPGTIVVSRDGSTVYVLTEST-----VDVFNFNQ--LSGTLSFVKSFGH 263

Query: 192 QVTVLLGNLSFPNGVALSEDGNYILLA 218
            + +    L   N +AL++    + ++
Sbjct: 264 GLLIDPRPLFGANQMALNKTETKLFIS 290

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 22/161 (13%)

Query: 110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN 169
           L+  + +  + K+  +    T++      +      +LD + ++  IY++D S +     
Sbjct: 4   LFFTNRH-EVRKMTLDRSEYTSLIPNLRNV-----VALDTEVASNRIYWSDLSQRMICST 57

Query: 170 HISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 229
            +             +    +   TV+  ++  P+G+A+    + I   ++    +    
Sbjct: 58  QLD------------RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105

Query: 230 LKTSKAGTIEIVAQLPGFPDNIKRSPRGG--FWVGIHSRRK 268
            K  K  T  +  +    P  I   P  G  +W    +  K
Sbjct: 106 TKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 144

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 178 DKTGRLMKYDPATKQVTVLLGNLSFPN----GVALSEDGNYILLAETTSCRILR------ 227
                ++ Y+  T Q   +L N +  +       LS D  ++ L  +   ++ R      
Sbjct: 33  SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLE-SDYSKLWRYSYTAT 91

Query: 228 YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF 259
           Y++     G      +LP     +  SP G  
Sbjct: 92  YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSK 123

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Length = 297

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 179 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR--YWLKTSKAG 236
             G L    P    V      +   NG+  S D       ++ S  +    Y L+T +  
Sbjct: 128 HQGALYSLFP-DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS 186

Query: 237 TIEIVAQLP---GFPD 249
               V +L      PD
Sbjct: 187 NRRSVYKLEKEEQIPD 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	359
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.93
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.91
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.87
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.86
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.81
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.8
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.75
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.75
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.75
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.75
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.71
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.7
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.7
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.68
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.67
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.65
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.65
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.63
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.62
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.6
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.6
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.57
3ott_A	758	Two-component system sensor histidine kinase; beta	99.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.55
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.55
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.54
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.54
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.53
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.52
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.51
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.49
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.48
3ott_A	758	Two-component system sensor histidine kinase; beta	99.48
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.48
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.48
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.47
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.43
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.4
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.4
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.39
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.37
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.36
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.36
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.33
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.33
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.33
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.33
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.31
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.3
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.29
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.29
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.28
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.27
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.27
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.26
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.26
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.26
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.24
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.24
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.22
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.22
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.21
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.2
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.2
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.19
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.18
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.16
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.15
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.15
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.15
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.14
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.13
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.13
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.12
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.12
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.11
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.11
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.08
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.08
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.07
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.06
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.05
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.04
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.04
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.03
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.03
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.03
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.03
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.03
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.02
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.02
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.01
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.0
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.0
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.0
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.99
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.99
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.99
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.98
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.9
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.9
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.89
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.89
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.89
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.87
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.87
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.86
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.85
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.84
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.84
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.83
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.83
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.82
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.81
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.81
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.8
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.79
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.79
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.78
3jro_A	753	Fusion protein of protein transport protein SEC13	98.77
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.76
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.76
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.76
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.75
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.75
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.75
2pm7_B	297	Protein transport protein SEC13, protein transport	98.74
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.74
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.72
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.72
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.71
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.7
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.69
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.66
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.65
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.65
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.65
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.63
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.63
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.63
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.62
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.61
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.6
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.58
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.58
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.57
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.55
2pm7_B	297	Protein transport protein SEC13, protein transport	98.55
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.51
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.5
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.49
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.48
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.47
3jro_A	753	Fusion protein of protein transport protein SEC13	98.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.44
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.44
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.44
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	98.4
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	98.37
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.35
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.3
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	98.3
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.3
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.29
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.29
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.26
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.26
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.26
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.24
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.24
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	98.22
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.21
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.19
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.18
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.17
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.13
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.09
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.09
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.05
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	98.05
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.99
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.91
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	97.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.81
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.81
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	97.8
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.76
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.75
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.74
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.63
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.57
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.47
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.43
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.43
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.4
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.33
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.13
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.88
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.49
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.17
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	95.23
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.12
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.78
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	94.73
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.6
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.39
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.13
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.04
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	92.56
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	92.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.06
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.86
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	91.39
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	91.04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.84
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	89.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.77
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.01
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	84.17
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	81.18

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=7e-31  Score=238.38  Aligned_cols=299  Identities=36%  Similarity=0.670  Sum_probs=216.2

Q ss_pred             EEEee-CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCC--CCCCCcccccccccccCCcceEEE
Q 018242           26 VQYQI-EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRD--GCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        26 ~~~~~-~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      .++.. +++..|++++++++|+++|++..+++|+++++++++++.+........  .+.+...   .........|.||+
T Consensus        10 ~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~p~gi~   86 (322)
T 2fp8_A           10 KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTD---AEKRPLCGRTYDIS   86 (322)
T ss_dssp             CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCC---GGGHHHHCCEEEEE
T ss_pred             ceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccc---hhccccCCCCceEE
Confidence            34555 457899999999999989999999999999998877776653221100  0000000   00111234689999


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          103 FNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       103 ~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      +++++++|||++..++|.++++++++++.+.....+.+...|+++++++ +|+ +||++....+....+...+......+
T Consensus        87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           87 YNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             EETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             EcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCc
Confidence            9975899999998888999999887766554433334456799999999 999 99998764322111111111123347


Q ss_pred             eEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242          182 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  261 (359)
                      .|+++|+++++++.+......|++|++++|++.+|++++.+++|++|++++...+..+.+...++ |++|++|++|+||+
T Consensus       166 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             EEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred             eEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence            89999998887776666677899999999999999999999999999987655555555555666 99999999999999


Q ss_pred             EEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCE
Q 018242          262 GIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGN  341 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~  341 (359)
                      ++...+..       .+          ..           ... ..+.+++++|+.+..+..++|.....++.+...+++
T Consensus       245 a~~~~~~~-------~~----------~~-----------~~~-~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~  295 (322)
T 2fp8_A          245 SSSEELDG-------NM----------HG-----------RVD-PKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGL  295 (322)
T ss_dssp             EEEEETTS-------ST----------TS-----------CEE-EEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTE
T ss_pred             EecCcccc-------cc----------cC-----------CCc-cEEEEECCCCCEEEEEECCCCCccccceEEEEeCCE
Confidence            99864321       00          00           011 578999999999999988777655667767667999


Q ss_pred             EEEecCCCCeEEEEcCC
Q 018242          342 LWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       342 l~ig~~~~~~l~~~~~~  358 (359)
                      ||+++..+++|.+++++
T Consensus       296 L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          296 LYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEECSSCSEEEEEEC-
T ss_pred             EEEeecCCCceEEEecc
Confidence            99999999999999875

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.96  E-value=1.2e-26  Score=210.83  Aligned_cols=283  Identities=19%  Similarity=0.248  Sum_probs=196.2

Q ss_pred             EEeeCC-CCCCceEEEccCCCeeEEec-------------CCCEEEEEEcCC--cceEEEeecCCCCCCCCCCccccccc
Q 018242           27 QYQIEG-AIGPESLAFDALGEGPYTGV-------------SDGRIIKWHQDQ--RRWLHFARTSPNRDGCEGAYEYDHAA   90 (359)
Q Consensus        27 ~~~~~~-~~~p~~i~~~~~G~~l~~~~-------------~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (359)
                      +..+++ ..+||+|+++++|. +|+++             ..|.|+++|+++  .+.+.+.....              .
T Consensus        42 C~~i~~~~~G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~--------------~  106 (355)
T 3sre_A           42 CNLVKGIDNGSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN--------------T  106 (355)
T ss_dssp             EEECTTCCSCCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECS--------------S
T ss_pred             CEEeCCCCCCcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCC--------------C
Confidence            344555 57999999999998 78776             578999999874  33333321100              0


Q ss_pred             ccccCCcceEEEEecC-CC--eEEEEeCCC-----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCC
Q 018242           91 KEHICGRPLGLCFNKT-NG--DLYIADAYF-----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS  162 (359)
Q Consensus        91 ~~~~~~~p~gi~~~~~-~g--~l~v~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~  162 (359)
                      +......|+||.+.++ ++  +|||++...     +|++++++++..+.+ ....+.++..||+++++++|+ +|+++..
T Consensus       107 ~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~-~~~~g~~~~~pND~~v~~~G~-fyvt~~~  184 (355)
T 3sre_A          107 LDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHL-KTIRHKLLPSVNDIVAVGPEH-FYATNDH  184 (355)
T ss_dssp             CCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEE-EEECCTTCSSEEEEEEEETTE-EEEEESC
T ss_pred             CCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEE-eccccCCCCCCceEEEeCCCC-EEecCCc
Confidence            1223457999998663 34  699998763     388888887765544 444556788999999999999 9999764


Q ss_pred             Cccccccce-eeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-CCcceeE
Q 018242          163 SQFQRRNHI-SVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEI  240 (359)
Q Consensus       163 ~~~~~~~~~-~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~  240 (359)
                      . |....+. .+.......+.|+++++.  +++.+..++..||||+++||++++|++++..++|++|+++.+ .....+.
T Consensus       185 ~-ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~  261 (355)
T 3sre_A          185 Y-FIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV  261 (355)
T ss_dssp             S-CSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             E-eCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE
Confidence            1 0000000 000112346789999984  566667778899999999999999999999999999999753 3444444


Q ss_pred             eecCCCCCCceEECC-CCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEEC----CCC
Q 018242          241 VAQLPGFPDNIKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRIS----EQG  315 (359)
Q Consensus       241 ~~~~~~~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g  315 (359)
                      + ..++.|+|+++|+ +|++|+|...++..    +.++++..      +-+               ..+.++.    .++
T Consensus       262 ~-~~~g~PDGi~vD~e~G~lwva~~~~g~~----v~~~~P~~------~~~---------------s~v~rI~~~~~~~~  315 (355)
T 3sre_A          262 L-SFDTLVDNISVDPVTGDLWVGCHPNGMR----IFFYDAEN------PPG---------------SEVLRIQDILSEEP  315 (355)
T ss_dssp             E-ECSSEEEEEEECTTTCCEEEEEESCHHH----HHSCCTTS------CCC---------------EEEEEEECTTSSSC
T ss_pred             E-eCCCCCceEEEeCCCCcEEEEecCCceE----EEEECCCC------CCC---------------CEEEEEEccCCCCc
Confidence            5 5678899999999 59999987644322    44455441      000               2344443    456


Q ss_pred             CEEEEEEccCCceeeceEEEEEeCCEEEEecCCCCeEEEEcC
Q 018242          316 NVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       316 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~  357 (359)
                      .+.+.|.+ +|..+...+.+...+|+||||+...+ +-.|++
T Consensus       316 ~v~~v~~d-dG~~l~~~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          316 KVTVVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             EEEEEEEE-CSSSCCSEEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EEEEEEEc-CCCEEEeeEEEEEECCEEEEEEcCCC-ceeccC
Confidence            67778877 89888888888888999999999888 555654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.93  E-value=2.6e-23  Score=185.81  Aligned_cols=256  Identities=16%  Similarity=0.204  Sum_probs=182.3

Q ss_pred             EEEEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           25 VVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      +.++. .+...|++++++++|+ ++|++..+++|++||++++ .+.+.                     .....|.++++
T Consensus        20 ~~~l~-~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~---------------------~~~~~~~~l~~   76 (296)
T 3e5z_A           20 ARRLA-DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM---------------------HPSHHQNGHCL   76 (296)
T ss_dssp             CEEEE-CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE---------------------SSCSSEEEEEE
T ss_pred             EEEEe-cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE---------------------CCCCCcceeeE
Confidence            34444 5578999999999998 8899999999999999987 55542                     22345889999


Q ss_pred             ecCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcc--ccccceeeeeecCCC
Q 018242          104 NKTNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQF--QRRNHISVILSGDKT  180 (359)
Q Consensus       104 ~~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~--~~~~~~~~~~~~~~~  180 (359)
                      ++ +|++|+++.. ++|.++++++++.+.+.......+...+++++++++|+ +|++++....  .......  ......
T Consensus        77 ~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~--~~~~~~  152 (296)
T 3e5z_A           77 NK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGG--EMELPG  152 (296)
T ss_dssp             CT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCC--CCCSSS
T ss_pred             CC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccc--cccCCC
Confidence            99 8899999865 57999999888876654333333455789999999999 9998752100  0000000  000123


Q ss_pred             ceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC-CCC-cceeEeec-CCCCCCceEECCCC
Q 018242          181 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKA-GTIEIVAQ-LPGFPDNIKRSPRG  257 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~-~~~-~~~~~~~~-~~~~p~~i~~d~~G  257 (359)
                      +.|++++++ +++..+......|++++++||++.+ ++++..++|++|+++. ... ...+.+ . ..+.|+++++|++|
T Consensus       153 ~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G  229 (296)
T 3e5z_A          153 RWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGG  229 (296)
T ss_dssp             CEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTS
T ss_pred             cEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCC
Confidence            589999998 6777776777889999999999977 9999999999999863 222 223444 4 45679999999999


Q ss_pred             CEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEE
Q 018242          258 GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE  337 (359)
Q Consensus       258 ~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~  337 (359)
                      +||+++ .                                        ..+.+++++|+.+..+..+.+     +..+..
T Consensus       230 ~l~v~~-~----------------------------------------~~v~~~~~~g~~~~~~~~~~~-----~~~~~f  263 (296)
T 3e5z_A          230 LIWASA-G----------------------------------------DGVHVLTPDGDELGRVLTPQT-----TSNLCF  263 (296)
T ss_dssp             CEEEEE-T----------------------------------------TEEEEECTTSCEEEEEECSSC-----CCEEEE
T ss_pred             CEEEEc-C----------------------------------------CeEEEECCCCCEEEEEECCCC-----ceeEEE
Confidence            999998 3                                        346677877777777665443     222222


Q ss_pred             ---eCCEEEEecCCCCeEEEEcCC
Q 018242          338 ---KDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       338 ---~~g~l~ig~~~~~~l~~~~~~  358 (359)
                         +++.||+++.  +.|.++++.
T Consensus       264 ~~~d~~~L~v~t~--~~l~~~~~~  285 (296)
T 3e5z_A          264 GGPEGRTLYMTVS--TEFWSIETN  285 (296)
T ss_dssp             ESTTSCEEEEEET--TEEEEEECS
T ss_pred             ECCCCCEEEEEcC--CeEEEEEcc
Confidence               2457888874  467777664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.1e-23  Score=187.62  Aligned_cols=259  Identities=15%  Similarity=0.201  Sum_probs=184.8

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      ...++++..+ ...+|+++++++|+ ++|++..+++|++|+++ ++.+.+.                     .....+.+
T Consensus        34 ~~~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~---------------------~~~~~~~g   90 (305)
T 3dr2_A           34 DARLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLL---------------------DATAFTNG   90 (305)
T ss_dssp             TCCCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEE---------------------ESCSCEEE
T ss_pred             CCceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEe---------------------CCCCccce
Confidence            3445556554 68899999999998 78899999999999985 4444442                     22345889


Q ss_pred             EEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCC--ccccccceeeeeec
Q 018242          101 LCFNKTNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSS--QFQRRNHISVILSG  177 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~--~~~~~~~~~~~~~~  177 (359)
                      +++++ +|++|+++.. ++|.+++++ ++.+.+.....+.+...|++++++++|+ +|++|...  ....+....  ...
T Consensus        91 l~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~--~~~  165 (305)
T 3dr2_A           91 NAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPA--DPE  165 (305)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCC--CCS
T ss_pred             eeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcccccccccc--ccc
Confidence            99999 8899999865 579999987 5666655433444556799999999999 99987531  000000000  001


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC-----CEEEEEEcCCCCCcceeEeec-CCCCCCce
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS-----CRILRYWLKTSKAGTIEIVAQ-LPGFPDNI  251 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i  251 (359)
                      ...+.|+++|++++++..+. ....|+++++++|++.||++++..     ++|++|+++...+...+.+.. ..+.|++|
T Consensus       166 ~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi  244 (305)
T 3dr2_A          166 LAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGF  244 (305)
T ss_dssp             SSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSE
T ss_pred             cCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeE
Confidence            12357999999878777666 667899999999999999999873     799999987554333444544 45679999


Q ss_pred             EECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeec
Q 018242          252 KRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRS  331 (359)
Q Consensus       252 ~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~  331 (359)
                      ++|++|+||+++.                                         .++.+|+++|+.+..+..+.+     
T Consensus       245 ~~d~~G~lwv~~~-----------------------------------------~gv~~~~~~g~~~~~~~~~~~-----  278 (305)
T 3dr2_A          245 CVDRGGWLWSSSG-----------------------------------------TGVCVFDSDGQLLGHIPTPGT-----  278 (305)
T ss_dssp             EECTTSCEEECCS-----------------------------------------SEEEEECTTSCEEEEEECSSC-----
T ss_pred             EECCCCCEEEecC-----------------------------------------CcEEEECCCCCEEEEEECCCc-----
Confidence            9999999999873                                         246778888888777765432     


Q ss_pred             eEEEE--EeCCEEEEecCCCCeEEEEcC
Q 018242          332 ISEVE--EKDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       332 ~~~~~--~~~g~l~ig~~~~~~l~~~~~  357 (359)
                      +..++  .+++.||+++.  ..|+.+++
T Consensus       279 ~~~~~f~~d~~~L~it~~--~~l~~~~~  304 (305)
T 3dr2_A          279 ASNCTFDQAQQRLFITGG--PCLWMLPL  304 (305)
T ss_dssp             CCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred             eeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence            22222  24568999885  57777765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.93  E-value=8.5e-24  Score=189.46  Aligned_cols=238  Identities=13%  Similarity=0.163  Sum_probs=177.4

Q ss_pred             EEeeCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ++...+...+|++.++++ +.++|++..+++|++||+++++...+.                      ....+.++++++
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~----------------------~~~~~~~i~~~~   63 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT----------------------MDAPVSSVALRQ   63 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE----------------------CSSCEEEEEEBT
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe----------------------CCCceEEEEECC
Confidence            444556789999999984 677889999999999999987554331                      124578999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                       +|++|++. .++|+++++++++++.+.......+...++++++|++|+ +|+++........      ......+.|++
T Consensus        64 -dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~------~~~~~~~~l~~  134 (297)
T 3g4e_A           64 -SGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPA------VLERHQGALYS  134 (297)
T ss_dssp             -TSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTT------BCCTTCEEEEE
T ss_pred             -CCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccc------cccCCCcEEEE
Confidence             78899997 568999999999887765533333456789999999999 9999643210000      00123468999


Q ss_pred             EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC--CCCCcceeEeecC---CCCCCceEECCCCCEE
Q 018242          186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TSKAGTIEIVAQL---PGFPDNIKRSPRGGFW  260 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~--~~~~~~~~~~~~~---~~~p~~i~~d~~G~lw  260 (359)
                      ++++ ++...+......|+++++++|++.+|++++..++|++|+++  .......+.+...   .+.|+++++|++|+||
T Consensus       135 ~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw  213 (297)
T 3g4e_A          135 LFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW  213 (297)
T ss_dssp             ECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred             EECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence            9987 55655556667899999999999999999999999999975  2223333444442   3579999999999999


Q ss_pred             EEEecCCCccccccccCCcc-ceeeecCCccceeeeeecccc
Q 018242          261 VGIHSRRKGISKLVLSFPWI-GNVLIKLPIDIVKIHSSLVKL  301 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~  301 (359)
                      ++++.++.     +.++++. |+++..++.+...+++|++++
T Consensus       214 va~~~~~~-----v~~~d~~tG~~~~~i~~p~~~~t~~~f~g  250 (297)
T 3g4e_A          214 VACYNGGR-----VIRLDPVTGKRLQTVKLPVDKTTSCCFGG  250 (297)
T ss_dssp             EEEETTTE-----EEEECTTTCCEEEEEECSSSBEEEEEEES
T ss_pred             EEEcCCCE-----EEEEcCCCceEEEEEECCCCCceEEEEeC
Confidence            99987665     6777764 898888888766777777663

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.91  E-value=6.8e-22  Score=177.56  Aligned_cols=265  Identities=18%  Similarity=0.266  Sum_probs=175.7

Q ss_pred             eCCCCCCceEEEccCCCeeEE-------ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           30 IEGAIGPESLAFDALGEGPYT-------GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~G~~l~~-------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      .+++..|++++++++|++|++       +..+++|++||+.++++..+..+                ........|.+++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----------------~~~~~~~~~~~i~   77 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----------------EVNGYGGIPAGCQ   77 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----------------EETTEECCEEEEE
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----------------ccCCCCCCCceEE
Confidence            556889999999999994445       47778999999887766655310                0011224588999


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEE-eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          103 FNKTNGDLYIADAYFGLLKVGPEGGLATAV-ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       103 ~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      ++++++++|+++..++|++++++ ++.+.+ .......+...+++++++++|+ +|+++.........+.  .......+
T Consensus        78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~--~~~~~~~~  153 (314)
T 1pjx_A           78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYT--RSMQEKFG  153 (314)
T ss_dssp             ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCC--BTTSSSCE
T ss_pred             EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCccccccccc--ccccCCCC
Confidence            99933999999877789999998 776654 3322223345789999999999 9999754210000000  00011236


Q ss_pred             eEEEEeCCCCcEEEEeCCCCCCceEEEc----cCCCEEEEEecCCCEEEEEEcC-CCCCcceeEeecCC----CCCCceE
Q 018242          182 RLMKYDPATKQVTVLLGNLSFPNGVALS----EDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQLP----GFPDNIK  252 (359)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~~~~p~gia~~----~d~~~l~v~~~~~~~i~~~~~~-~~~~~~~~~~~~~~----~~p~~i~  252 (359)
                      .|++++++ +++..+......|++++++    +|++.+|+++..+++|++|+.+ .......+.+...+    +.|++++
T Consensus       154 ~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             EEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             eEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence            79999987 6666555555678999999    9998899999888999999976 22222223333332    5588999


Q ss_pred             ECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCC-CCEEEEEEccCCceeec
Q 018242          253 RSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRS  331 (359)
Q Consensus       253 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~  331 (359)
                      +|++|++|+++...+                                       .+.+++++ ++.+..+..+.    ..
T Consensus       233 ~d~~G~l~v~~~~~~---------------------------------------~i~~~d~~~g~~~~~~~~~~----~~  269 (314)
T 1pjx_A          233 FDEDNNLLVANWGSS---------------------------------------HIEVFGPDGGQPKMRIRCPF----EK  269 (314)
T ss_dssp             EBTTCCEEEEEETTT---------------------------------------EEEEECTTCBSCSEEEECSS----SC
T ss_pred             ECCCCCEEEEEcCCC---------------------------------------EEEEEcCCCCcEeEEEeCCC----CC
Confidence            999999999987533                                       35556655 44444433221    23


Q ss_pred             eEEEEEe-CCE-EEEecCCCCeEEEEcCC
Q 018242          332 ISEVEEK-DGN-LWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       332 ~~~~~~~-~g~-l~ig~~~~~~l~~~~~~  358 (359)
                      +..+..+ +|+ ||+++..++.|.++++.
T Consensus       270 ~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          270 PSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            3344433 444 88887767778777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=6.8e-20  Score=162.60  Aligned_cols=245  Identities=13%  Similarity=0.229  Sum_probs=170.5

Q ss_pred             CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      .+..|.+++++++|++++++..+++|.+||+++.....+....               ........|.++++++.++++|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~---------------~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG---------------KRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS---------------SSTTCBSSEEEEEEETTTTEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC---------------CCcccccCceEEEEEcCCCeEE
Confidence            4678999999999994455577889999998865444432100               0011224588999964489999


Q ss_pred             EEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          112 IADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       112 v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      +++.  .+.|.+++.++.....+..    .....|++++++++|+ +|+++..                 .+.|++++++
T Consensus        93 v~~~~~~~~i~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~~  150 (286)
T 1q7f_A           93 VTERSPTHQIQIYNQYGQFVRKFGA----TILQHPRGVTVDNKGR-IIVVECK-----------------VMRVIIFDQN  150 (286)
T ss_dssp             EEECGGGCEEEEECTTSCEEEEECT----TTCSCEEEEEECTTSC-EEEEETT-----------------TTEEEEECTT
T ss_pred             EEcCCCCCEEEEECCCCcEEEEecC----ccCCCceEEEEeCCCC-EEEEECC-----------------CCEEEEEcCC
Confidence            9985  4579999976554433311    1335788999999999 9999653                 3579999987


Q ss_pred             CCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--CCCCCceEECCCCCEEEEEec
Q 018242          190 TKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       190 ~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      +.....+.  .....|++++++++++ +|+++..+++|.+|+.++.   ....+...  ...|.++++|++|++|+++..
T Consensus       151 g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~  226 (286)
T 1q7f_A          151 GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNH  226 (286)
T ss_dssp             SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             CCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCC
Confidence            54444443  3356799999999986 9999988999999996442   12222221  145889999999999999875


Q ss_pred             CCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEE
Q 018242          266 RRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWI  344 (359)
Q Consensus       266 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~i  344 (359)
                      .+                                      ..+.+++++++.+..+.....  ...+..+..+ +|+||+
T Consensus       227 ~~--------------------------------------~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~v  266 (286)
T 1q7f_A          227 NN--------------------------------------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVL  266 (286)
T ss_dssp             SS--------------------------------------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEE
T ss_pred             CC--------------------------------------EEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEE
Confidence            32                                      146667778877776654222  2234455444 789999


Q ss_pred             ecCCCCeEEEEcCC
Q 018242          345 GSVNMPYAGLYNYS  358 (359)
Q Consensus       345 g~~~~~~l~~~~~~  358 (359)
                      ++. ++.|.++++.
T Consensus       267 s~~-~~~v~v~~~~  279 (286)
T 1q7f_A          267 ASK-DYRLYIYRYV  279 (286)
T ss_dssp             EET-TTEEEEEECS
T ss_pred             ECC-CCeEEEEEcc
Confidence            985 7889988764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.88  E-value=2.2e-20  Score=169.48  Aligned_cols=224  Identities=19%  Similarity=0.206  Sum_probs=161.6

Q ss_pred             EEEEeeCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           25 VVQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      .+++.......+|+++++++ +.++|++..+++|++||+++++...+.                      ....+.++++
T Consensus        40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~----------------------~~~~v~~i~~   97 (326)
T 2ghs_A           40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA----------------------LPFMGSALAK   97 (326)
T ss_dssp             CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE----------------------CSSCEEEEEE
T ss_pred             eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE----------------------CCCcceEEEE
Confidence            45666556778999999997 667788888899999999887554331                      1234778999


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          104 NKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       104 ~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ++ +|++|++. ..+|+++++++++++.+.......+...++++++|++|+ +|+++....           .....+.|
T Consensus        98 ~~-dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~-----------~~~~~~~l  163 (326)
T 2ghs_A           98 IS-DSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRK-----------AETGAGSI  163 (326)
T ss_dssp             EE-TTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETT-----------CCTTCEEE
T ss_pred             eC-CCeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCc-----------CCCCceEE
Confidence            98 89999997 457999999988876654322222345788999999999 999864211           01124679


Q ss_pred             EEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC--CC-CCcceeEeec---CCCCCCceEECCCC
Q 018242          184 MKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK--TS-KAGTIEIVAQ---LPGFPDNIKRSPRG  257 (359)
Q Consensus       184 ~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~--~~-~~~~~~~~~~---~~~~p~~i~~d~~G  257 (359)
                      ++++ + +++..+......|+++++++|++.+|++++..++|++|+++  .. .....+.+..   ..+.|+++++|++|
T Consensus       164 ~~~~-~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G  241 (326)
T 2ghs_A          164 YHVA-K-GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG  241 (326)
T ss_dssp             EEEE-T-TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred             EEEe-C-CcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence            9999 4 66665544556789999999999999999888999999985  33 3333334433   23568999999999


Q ss_pred             CEEEEEecCCCccccccccCCccceeeecCCccc
Q 018242          258 GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI  291 (359)
Q Consensus       258 ~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  291 (359)
                      ++|++++..+.     +.+++++++.+..+..+.
T Consensus       242 ~lwva~~~~~~-----v~~~d~~g~~~~~i~~~~  270 (326)
T 2ghs_A          242 HIWNARWGEGA-----VDRYDTDGNHIARYEVPG  270 (326)
T ss_dssp             CEEEEEETTTE-----EEEECTTCCEEEEEECSC
T ss_pred             CEEEEEeCCCE-----EEEECCCCCEEEEEECCC
Confidence            99999976543     555555666655554443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.87  E-value=2.3e-19  Score=159.49  Aligned_cols=272  Identities=15%  Similarity=0.171  Sum_probs=183.9

Q ss_pred             EEeeC-CCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           27 QYQIE-GAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        27 ~~~~~-~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      .+.++ ....|++|+++++|+ +|++. .+++|.++|++ +++..+..                   ......|.+++++
T Consensus        12 ~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~-------------------~~~~~~~~~i~~~   70 (300)
T 2qc5_A           12 EFNLSIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEFEV-------------------PTPDAKVMCLIVS   70 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEC-------------------SSTTCCEEEEEEC
T ss_pred             EEecCCCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEEEC-------------------CCCCCcceeEEEC
Confidence            44443 467999999999999 66554 57899999998 65655421                   1122468899999


Q ss_pred             cCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      + ++++|+++.. ++|.+++++ ++.+.+....   ....|++++++++|+ +|+++..                 .+.|
T Consensus        71 ~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i  127 (300)
T 2qc5_A           71 S-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGD-IWFTQLN-----------------GDRI  127 (300)
T ss_dssp             T-TSCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTC-EEEEETT-----------------TTEE
T ss_pred             C-CCCEEEEecCCCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCC-EEEEccC-----------------CCeE
Confidence            8 8999999864 469999998 6554432211   225688999999999 9999643                 3579


Q ss_pred             EEEeCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCE
Q 018242          184 MKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGF  259 (359)
Q Consensus       184 ~~~d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l  259 (359)
                      ++++++ +++..+.  .....|.+++++++++ +|++...++.|++++.++    ....+..  ....|.++++|++|++
T Consensus       128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l  201 (300)
T 2qc5_A          128 GKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGAL  201 (300)
T ss_dssp             EEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             EEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCE
Confidence            999998 6665442  2356789999999998 999998889999998632    2222221  1235888999999999


Q ss_pred             EEEEecCCCccccccccCCccceeeec-CCccceeeeeecccccCc-------ceEEEEECCCCCEEEEEEccCCceeec
Q 018242          260 WVGIHSRRKGISKLVLSFPWIGNVLIK-LPIDIVKIHSSLVKLSGN-------GGMAMRISEQGNVLEILEEIGRKMWRS  331 (359)
Q Consensus       260 wv~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~g~~~~~  331 (359)
                      |+++...+.     +.++++.++.... ++.....+..++++....       .+.+.++++++... .+..+.+  ...
T Consensus       202 ~v~~~~~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~--~~~  273 (300)
T 2qc5_A          202 WFVEIMGNK-----IGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQ-EYQLQTE--NAE  273 (300)
T ss_dssp             EEEETTTTE-----EEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEECCST--TCC
T ss_pred             EEEccCCCE-----EEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEE-EEECCcc--CCc
Confidence            999876554     6666666655432 332233444444432211       14677788766544 3333222  233


Q ss_pred             eEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          332 ISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       332 ~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      +..+..+ +|+||+++. + +|.++++.
T Consensus       274 ~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          274 PHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             cceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            4555555 789999998 6 89998865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.87  E-value=2.7e-19  Score=162.22  Aligned_cols=202  Identities=22%  Similarity=0.292  Sum_probs=146.9

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      +....|++++++++|+++|++..+++|++||+++++++.+.                    ......|.++++++ ++++
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------~~~~~~~~~i~~~~-dg~l  100 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------VSHKANPAAIKIHK-DGRL  100 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------ECSSSSEEEEEECT-TSCE
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe--------------------eCCCCCcceEEECC-CCcE
Confidence            34578999999999995557788899999999887655432                    01224588999998 8899


Q ss_pred             EEEeCCC-----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          111 YIADAYF-----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       111 ~v~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      |+++...     +|+++++++++.+.+....  .....+++++++++|+ +|+++....           .....+.|++
T Consensus       101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~-----------~~~~~~~l~~  166 (333)
T 2dg1_A          101 FVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGG-FYFTDFRGY-----------STNPLGGVYY  166 (333)
T ss_dssp             EEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSC-EEEEECCCB-----------TTBCCEEEEE
T ss_pred             EEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCC-EEEEecccc-----------ccCCCceEEE
Confidence            9997654     7999999988766433211  1234688999999999 999965310           0012457999


Q ss_pred             EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-C-Ccce--eEeecCC--CCCCceEECCCCCE
Q 018242          186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-K-AGTI--EIVAQLP--GFPDNIKRSPRGGF  259 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~-~~~~--~~~~~~~--~~p~~i~~d~~G~l  259 (359)
                      ++++++++..+......|+++++++|++.+|+++...++|++|+++.. . ....  ..+....  ..|+++++|++|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l  246 (333)
T 2dg1_A          167 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL  246 (333)
T ss_dssp             ECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred             EeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCE
Confidence            999877776655455668999999999989999988899999998532 1 1111  1122222  36889999999999


Q ss_pred             EEEEecCC
Q 018242          260 WVGIHSRR  267 (359)
Q Consensus       260 wv~~~~~~  267 (359)
                      |+++...+
T Consensus       247 ~v~~~~~~  254 (333)
T 2dg1_A          247 YVAMYGQG  254 (333)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcCCC
Confidence            99987543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.86  E-value=1.7e-19  Score=162.08  Aligned_cols=215  Identities=19%  Similarity=0.179  Sum_probs=154.9

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..|++++++++|+++|++..+++|+++|+++. ...+.                     .....|.++++++ +|++|++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~---------------------~~~~~p~gia~~~-dG~l~va   88 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA---------------------TVEGKVSGLAFTS-NGDLVAT   88 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE---------------------ECSSEEEEEEECT-TSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE---------------------eCCCCceeEEEcC-CCcEEEE
Confidence            68999999999996667778899999999875 32221                     1234689999999 7889999


Q ss_pred             eCC-C--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAY-F--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~-~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +.. +  .|++++..+++++.+... .  ....+++++..++++ +|+++..                 .+.|+++|+.+
T Consensus        89 d~~~~~~~v~~~d~~~g~~~~~~~~-~--~~~~~~g~~~~~~~~-~~v~d~~-----------------~g~i~~~d~~~  147 (306)
T 2p4o_A           89 GWNADSIPVVSLVKSDGTVETLLTL-P--DAIFLNGITPLSDTQ-YLTADSY-----------------RGAIWLIDVVQ  147 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEEC-T--TCSCEEEEEESSSSE-EEEEETT-----------------TTEEEEEETTT
T ss_pred             eccCCcceEEEEcCCCCeEEEEEeC-C--CccccCcccccCCCc-EEEEECC-----------------CCeEEEEeCCC
Confidence            854 2  388999888887665542 1  234567888777776 9999643                 45899999876


Q ss_pred             CcEEEE-----------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC-CCCcceeEeecCCCCCCceEECCCCC
Q 018242          191 KQVTVL-----------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIEIVAQLPGFPDNIKRSPRGG  258 (359)
Q Consensus       191 ~~~~~~-----------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~~G~  258 (359)
                      +..+..           ...+..|+||  ++|++.||++++.+++|++|+++. ......+.+... ..|++|++|++|+
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~  224 (306)
T 2p4o_A          148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGN  224 (306)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCC
T ss_pred             CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCC
Confidence            533221           1234568888  788889999999999999999875 333344444443 4599999999999


Q ss_pred             EEEEEecCCCccccccccCCcccee--eecCCccceeeeeeccc
Q 018242          259 FWVGIHSRRKGISKLVLSFPWIGNV--LIKLPIDIVKIHSSLVK  300 (359)
Q Consensus       259 lwv~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~  300 (359)
                      +|++.+..+.     +.++++.|++  +..++.+...+++++++
T Consensus       225 l~va~~~~~~-----V~~~~~~G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          225 LYGATHIYNS-----VVRIAPDRSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             EEEECBTTCC-----EEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred             EEEEeCCCCe-----EEEECCCCCEEEEeecccccCCceEEEEe
Confidence            9999987665     6777777776  33455554555555554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=2.6e-18  Score=152.62  Aligned_cols=267  Identities=12%  Similarity=0.159  Sum_probs=178.9

Q ss_pred             CCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           32 GAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ....|++++++++|+ +|++.. +++|.++|++ +++..+..                   ......|.++++++ +|++
T Consensus        13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~-------------------~~~~~~~~~i~~~~-~g~l   70 (299)
T 2z2n_A           13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEYPL-------------------PTPDAKVMCLTISS-DGEV   70 (299)
T ss_dssp             SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEEEC-------------------SSTTCCEEEEEECT-TSCE
T ss_pred             cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEecC-------------------CcccCceeeEEECC-CCCE
Confidence            457899999999999 666654 6899999998 65655431                   11235688999998 8999


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          111 YIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       111 ~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      |+++.. ++|++++++ ++++.+...   .....|++++++++|+ +|+++..                 .+.|+++|+ 
T Consensus        71 ~v~~~~~~~i~~~~~~-g~~~~~~~~---~~~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i~~~d~-  127 (299)
T 2z2n_A           71 WFTENAANKIGRITKK-GIIKEYTLP---NPDSAPYGITEGPNGD-IWFTEMN-----------------GNRIGRITD-  127 (299)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECS---STTCCEEEEEECTTSC-EEEEETT-----------------TTEEEEECT-
T ss_pred             EEeCCCCCeEEEECCC-CcEEEEeCC---CcCCCceeeEECCCCC-EEEEecC-----------------CceEEEECC-
Confidence            999864 469999987 444443321   1234788999999999 9999543                 357999998 


Q ss_pred             CCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-c-CCCCCCceEECCCCCEEEEEec
Q 018242          190 TKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q-LPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       190 ~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      +++...+.  .....|.+++++++++ +|++....+.|++++. ..   ....+. . ....|.++++|++|++|+++..
T Consensus       128 ~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          128 DGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SG---DITEFKIPTPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             TCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CC---cEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence            46665443  2345689999999986 8999888889999986 22   222221 1 2235788999999999999876


Q ss_pred             CCCccccccccCCccceeeec-CCccceeeeeeccccc--------CcceEEEEECCCCCEEEEEEccCCceeeceEEEE
Q 018242          266 RRKGISKLVLSFPWIGNVLIK-LPIDIVKIHSSLVKLS--------GNGGMAMRISEQGNVLEILEEIGRKMWRSISEVE  336 (359)
Q Consensus       266 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~  336 (359)
                      .+.     +.+++++++.... .+.....+..+++...        .. +.+.++++++ .+..+..+.+  ...+..+.
T Consensus       203 ~~~-----i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~~g-~~~~~~~~~~--~~~~~~i~  273 (299)
T 2z2n_A          203 GNK-----IGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGA-NKIGRLTSNN-IIEEYPIQIK--SAEPHGIC  273 (299)
T ss_dssp             TTE-----EEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT-TEEEEEETTT-EEEEEECSSS--SCCEEEEE
T ss_pred             Cce-----EEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCC-ceEEEECCCC-ceEEEeCCCC--CCccceEE
Confidence            543     5666656554332 2222233444444322        22 4677777755 3444433222  12344443


Q ss_pred             EeCCEEEEecCCCCeEEEEcCC
Q 018242          337 EKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       337 ~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                      ..+|+||+++. ++.|.++++.
T Consensus       274 ~~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          274 FDGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             ECSSCEEEEET-TTEEEEEEEC
T ss_pred             ecCCCEEEEec-CCcEEEEEcC
Confidence            37899999986 6889988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.86  E-value=2.5e-19  Score=157.25  Aligned_cols=234  Identities=18%  Similarity=0.279  Sum_probs=161.8

Q ss_pred             CCceEEEccCCCeeEE-e-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDALGEGPYT-G-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~-~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .|++++++++|+ +|+ + ..+++|.++|+.+.....+.                    ......|.+|++++ ++++|+
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~p~~i~~~~-~g~l~v   82 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLP--------------------FNGLYQPQGLAVDG-AGTVYV   82 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EECC--------------------CCSCCSCCCEEECT-TCCEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceEe--------------------eCCcCCcceeEECC-CCCEEE
Confidence            999999999999 666 5 66789999998765332210                    11224588999999 788999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ++..++|++++++++....+..    .....|++++++++|+ +|+++..                 .+.|++++..+..
T Consensus        83 ~~~~~~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~~~~~  140 (270)
T 1rwi_B           83 TDFNNRVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGA-VYVADRG-----------------NNRVVKLAAGSKT  140 (270)
T ss_dssp             EETTTEEEEECTTCSCCEECCC----CSCSSEEEEEECTTCC-EEEEEGG-----------------GTEEEEECTTCCS
T ss_pred             EcCCCEEEEEeCCCceEeeeec----CCcCCCcceEECCCCC-EEEEECC-----------------CCEEEEEECCCce
Confidence            9875579999998776543311    1235788999999999 9999643                 3579999876544


Q ss_pred             EEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCCcc
Q 018242          193 VTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGI  270 (359)
Q Consensus       193 ~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~~~  270 (359)
                      .... ......|.+++++++++ +|+++..+++|.+|+.++...   ..... ....|.++++|++|++|+++...+   
T Consensus       141 ~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~---  213 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQ---VVLPFTDITAPWGIAVDEAGTVYVTEHNTN---  213 (270)
T ss_dssp             CEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCE---EECCCSSCCSEEEEEECTTCCEEEEETTTS---
T ss_pred             eEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCce---EeecccCCCCceEEEECCCCCEEEEECCCC---
Confidence            3322 23345799999999987 999998889999998754321   11111 114588999999999999987543   


Q ss_pred             ccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEEecCCC
Q 018242          271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIGSVNM  349 (359)
Q Consensus       271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig~~~~  349 (359)
                                                          .+.++++++....... ..+  ...+..+..+ +|+||+++..+
T Consensus       214 ------------------------------------~v~~~~~~~~~~~~~~-~~~--~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          214 ------------------------------------QVVKLLAGSTTSTVLP-FTG--LNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             ------------------------------------CEEEECTTCSCCEECC-CCS--CSCEEEEEECTTCCEEEEEGGG
T ss_pred             ------------------------------------cEEEEcCCCCcceeec-cCC--CCCceeEEECCCCCEEEEECCC
Confidence                                                3455666554433221 112  2345566555 68999999999


Q ss_pred             CeEEEEcCC
Q 018242          350 PYAGLYNYS  358 (359)
Q Consensus       350 ~~l~~~~~~  358 (359)
                      +.|.++++.
T Consensus       255 ~~v~~~~~~  263 (270)
T 1rwi_B          255 DRVVKLTSL  263 (270)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEcCC
Confidence            999999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.85  E-value=1.1e-18  Score=163.08  Aligned_cols=243  Identities=12%  Similarity=0.067  Sum_probs=166.6

Q ss_pred             CCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ++..|.+|+++++|++|+++..+++|.++|++++....+.                     .....|. ++++++++.||
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~---------------------~~~~~~~-ia~~~~g~~l~  186 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH---------------------PGFKGGK-PAVTKDKQRVY  186 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE---------------------ETCCBCB-CEECTTSSEEE
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee---------------------ccCCCCc-eeEecCCCcEE
Confidence            4789999999999996667777799999999987655542                     1123466 89999667788


Q ss_pred             EEeCCC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          112 IADAYF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       112 v~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +++...  .|++++..++................|+++++++ +|+ ||+++.                  .+.|+++|+
T Consensus       187 ~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~------------------~~~I~~~d~  247 (409)
T 3hrp_A          187 SIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDS------------------NKNFGRFNV  247 (409)
T ss_dssp             EEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECT------------------TCEEEEEET
T ss_pred             EEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEEC------------------CCcEEEEEC
Confidence            887644  6999998766432222111111345789999999 566 999842                  357999999


Q ss_pred             CCCcEEEE----eCC--CCCCc-eEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---------------CC
Q 018242          189 ATKQVTVL----LGN--LSFPN-GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---------------PG  246 (359)
Q Consensus       189 ~~~~~~~~----~~~--~~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~  246 (359)
                      +++....+    ..+  ...|. +++++|+++.||+++..+++|++|+.++.    ...+...               -.
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~  323 (409)
T 3hrp_A          248 KTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFA  323 (409)
T ss_dssp             TTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCS
T ss_pred             CCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeC
Confidence            87766554    222  12355 99999976789999999999999987543    2222211               12


Q ss_pred             CCCceEECCCCCEEEEEe-cCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEEC-CCCCEEEEEEc-
Q 018242          247 FPDNIKRSPRGGFWVGIH-SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRIS-EQGNVLEILEE-  323 (359)
Q Consensus       247 ~p~~i~~d~~G~lwv~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~-  323 (359)
                      .|.+|++|++|+||++.. .++.     +.                                  +++ ++|.+...... 
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~-----I~----------------------------------~~~~~~G~v~~~~g~~  364 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYC-----LR----------------------------------KLDILDGYVSTVAGQV  364 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCE-----EE----------------------------------EEETTTTEEEEEEECT
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCE-----EE----------------------------------EEECCCCEEEEEeCCC
Confidence            488999999999999987 6543     33                                  333 22322211111 


Q ss_pred             -----cCC----ceeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          324 -----IGR----KMWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       324 -----~~g----~~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                           .+|    ..+..+.++..+ +|+||++...+.+|.++.++
T Consensus       365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence                 011    124567777766 69999999999999998764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.84  E-value=1.2e-18  Score=163.76  Aligned_cols=242  Identities=14%  Similarity=0.126  Sum_probs=165.5

Q ss_pred             CCCCCceEEEccC---CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           32 GAIGPESLAFDAL---GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        32 ~~~~p~~i~~~~~---G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      ++..|.+|+++++   |+ ||++...++|+++++.+++++.+.                     .....|.+|++++ +|
T Consensus       137 ~~~~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~---------------------~~~~~P~giavd~-dG  193 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKT---------------------TNIGQCADVNFTL-NG  193 (433)
T ss_dssp             CCSCCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEEC---------------------CCCSCEEEEEECT-TC
T ss_pred             ccCCCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEee---------------------cCCCCccEEEECC-CC
Confidence            6789999999984   77 555443389999999877665442                     2335699999999 66


Q ss_pred             eEEEEeCC-----CcEEEEeCCCCeE--EEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          109 DLYIADAY-----FGLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       109 ~l~v~~~~-----~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +||+++..     .+++.++..++..  ..+.      ....|+++++++ +|+ |||++..                 .
T Consensus       194 ~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~------~~~~P~giavd~~~G~-lyv~d~~-----------------~  249 (433)
T 4hw6_A          194 DMVVVDDQSSDTNTGIYLFTRASGFTERLSLC------NARGAKTCAVHPQNGK-IYYTRYH-----------------H  249 (433)
T ss_dssp             CEEEEECCSCTTSEEEEEECGGGTTCCEEEEE------ECSSBCCCEECTTTCC-EEECBTT-----------------C
T ss_pred             CEEEEcCCCCcccceEEEEECCCCeecccccc------ccCCCCEEEEeCCCCe-EEEEECC-----------------C
Confidence            79999863     2477776654322  1111      345789999999 788 9999754                 4


Q ss_pred             ceEEEEeCCCCcE-EEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecC---C-------
Q 018242          181 GRLMKYDPATKQV-TVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQL---P-------  245 (359)
Q Consensus       181 g~v~~~d~~~~~~-~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~---~-------  245 (359)
                      +.|++++++++.+ ..+.  .....+.+++++++++.||+++..+++|++++.+..  .......+...   .       
T Consensus       250 ~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~  329 (433)
T 4hw6_A          250 AMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMG  329 (433)
T ss_dssp             SEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEG
T ss_pred             CEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcc
Confidence            5799999987766 3332  223345689999999999999999999999987632  22111222211   1       


Q ss_pred             -----CCCCceEE---------CCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEE
Q 018242          246 -----GFPDNIKR---------SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRI  311 (359)
Q Consensus       246 -----~~p~~i~~---------d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (359)
                           ..|.++++         |++|+||++...++.     +.                                  ++
T Consensus       330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-----I~----------------------------------~~  370 (433)
T 4hw6_A          330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-----VR----------------------------------VL  370 (433)
T ss_dssp             GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-----EE----------------------------------EE
T ss_pred             cceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-----EE----------------------------------EE
Confidence                 23778999         999999999987553     33                                  34


Q ss_pred             CCCCCEEEEEEc--------cCC-----ceeeceEEEEEe--CCEEEEecCCCCeEEEEcCCC
Q 018242          312 SEQGNVLEILEE--------IGR-----KMWRSISEVEEK--DGNLWIGSVNMPYAGLYNYSS  359 (359)
Q Consensus       312 ~~~g~~~~~~~~--------~~g-----~~~~~~~~~~~~--~g~l~ig~~~~~~l~~~~~~~  359 (359)
                      +++|.+......        .+|     ..+..+.++..+  +|+|||+...+++|.++.++.
T Consensus       371 ~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  433 (433)
T 4hw6_A          371 TPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPEE  433 (433)
T ss_dssp             CTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             CCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecCC
Confidence            444422222211        011     124456777665  899999999999999998763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.82  E-value=3.7e-18  Score=154.95  Aligned_cols=254  Identities=14%  Similarity=0.220  Sum_probs=162.8

Q ss_pred             CCCCCceEEEccCCCeeEEecCC------------------------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccc
Q 018242           32 GAIGPESLAFDALGEGPYTGVSD------------------------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYD   87 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (359)
                      ++..|.+++++++|++++++..+                        +.|+++|++++++....                
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------   85 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------   85 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE----------------
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc----------------
Confidence            46789999999999944444444                        26999999876543321                


Q ss_pred             cccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCCCC--eEEEEeecC-C---CccccccceEEEeC-CCCEEEEE
Q 018242           88 HAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPEGG--LATAVATQS-E---GIPFRFCNSLDIDQ-STGIIYFT  159 (359)
Q Consensus        88 ~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~~~--~~~~~~~~~-~---~~~~~~~~~l~~d~-~g~~l~v~  159 (359)
                         .......|.++++++ +|++|+++..+ .|.++++++.  .+..+.... .   ...+..|++|++++ +|+ +|++
T Consensus        86 ---~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~  160 (329)
T 3fvz_A           86 ---GKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVS  160 (329)
T ss_dssp             ---CTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEE
T ss_pred             ---CCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEE
Confidence               112234699999999 88899998754 6999998876  333332211 0   12345799999999 788 9999


Q ss_pred             eCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC----------CCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          160 DSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG----------NLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       160 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~----------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      +..                ..+.|.++++++.....+..          .+..|.++++++++..+|+++..+++|.+|+
T Consensus       161 d~~----------------~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~  224 (329)
T 3fvz_A          161 DGY----------------CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK  224 (329)
T ss_dssp             ECS----------------SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCC----------------CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence            741                13579999976443333321          2345999999999667999999999999999


Q ss_pred             cCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceE
Q 018242          230 LKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGM  307 (359)
Q Consensus       230 ~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (359)
                      .+..+.  ...+..  ....|.++++.+ |.++.....        +.+-+                       ... ..
T Consensus       225 ~~~G~~--~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~--------~~v~~-----------------------~~~-~~  269 (329)
T 3fvz_A          225 TDTKEF--VREIKHASFGRNVFAISYIP-GFLFAVNGK--------PYFGD-----------------------QEP-VQ  269 (329)
T ss_dssp             TTTCCE--EEEECCTTTTTCEEEEEEET-TEEEEEECC--------CCTTC-----------------------SCC-CC
T ss_pred             CCCCcE--EEEEeccccCCCcceeeecC-CEEEEeCCC--------EEecc-----------------------CCC-cE
Confidence            763221  122211  222345566666 544443221        01000                       011 34


Q ss_pred             EEEEC-CCCCEEEEEEccCCceeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          308 AMRIS-EQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       308 ~~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      +..++ .+|+.+..+.... .....+.++..+ +|+||+++..+++|.+++++
T Consensus       270 v~~~~~~~g~~~~~~~~~~-~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          270 GFVMNFSSGEIIDVFKPVR-KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEETTTCCEEEEECCSS-SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEcCCC-CccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            55566 5577776664222 224566777665 77999999999999998763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.82  E-value=3.2e-18  Score=156.63  Aligned_cols=211  Identities=16%  Similarity=0.149  Sum_probs=154.8

Q ss_pred             EeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           28 YQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ..+..+..|.++++++ +++++|++...++|+++++++...+.+.                    ......|.|+++|+.
T Consensus        67 ~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~--------------------~~~~~~p~glavd~~  126 (349)
T 3v64_C           67 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV--------------------STGLESPGGLAVDWV  126 (349)
T ss_dssp             EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------------------CSSCSCCCEEEEETT
T ss_pred             EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE--------------------eCCCCCccEEEEecC
Confidence            3345577899999995 6777888899999999999876433321                    122356899999987


Q ss_pred             CCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +++||+++.. +.|.++++++...+.+..    .....|++|++||++++||++|.+.                .+.|++
T Consensus       127 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~~----------------~~~I~r  186 (349)
T 3v64_C          127 HDKLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEA  186 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECSS----------------SCEEEE
T ss_pred             CCeEEEEcCCCCeEEEEcCCCCceEEEEe----CCCCCcceEEEecCcCeEEEeccCC----------------CCEEEE
Confidence            8999999875 469999998765444432    1345789999998655699997651                257999


Q ss_pred             EeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEE
Q 018242          186 YDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       186 ~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~  263 (359)
                      +++++...+.+. ..+..|+||+++++++.|||+++..++|+++++++..   .+.+.. ....|.+|+++ +|++|++.
T Consensus       187 ~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td  262 (349)
T 3v64_C          187 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTD  262 (349)
T ss_dssp             EETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEE
T ss_pred             EeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEec
Confidence            998865444443 4567899999999888999999999999999987532   233332 23569999995 57899999


Q ss_pred             ecCCCccccccccCC-ccceeeecC
Q 018242          264 HSRRKGISKLVLSFP-WIGNVLIKL  287 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~-~~g~~~~~~  287 (359)
                      +..+.     +..++ .+|+....+
T Consensus       263 ~~~~~-----V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          263 WHTKS-----INSANKFTGKNQEII  282 (349)
T ss_dssp             TTTTE-----EEEEETTTCCSCEEE
T ss_pred             CCCCe-----EEEEEccCCCccEEe
Confidence            88765     55554 466655444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=1.4e-17  Score=156.64  Aligned_cols=244  Identities=16%  Similarity=0.179  Sum_probs=167.2

Q ss_pred             CCCCCCceEEEcc--CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           31 EGAIGPESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        31 ~~~~~p~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      .++..|.+|+++|  +|+ ||+....++|.++|++++.++.+.                     .....|.+|+++++++
T Consensus       134 ~~~~~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~---------------------~~~~~P~~ia~d~~G~  191 (430)
T 3tc9_A          134 GGFGGAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVY---------------------SGLSKVRTICWTHEAD  191 (430)
T ss_dssp             BCCSCCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEE---------------------CCCSCEEEEEECTTSS
T ss_pred             cCCCCCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEe---------------------cCCCCcceEEEeCCCC
Confidence            3578999999996  466 665544489999999987555442                     2345699999999444


Q ss_pred             eEEEEeCCC-----cEEEEeCCCCeE--EEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          109 DLYIADAYF-----GLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       109 ~l~v~~~~~-----~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      .||+++..+     .++.++.+++..  ..+.      ....|+++++++ +|+ ||++|..                 .
T Consensus       192 ~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~------~~~~p~giavdp~~g~-lyv~d~~-----------------~  247 (430)
T 3tc9_A          192 SMIITNDQNNNDRPNNYILTRESGFKVITELT------KGQNCNGAETHPINGE-LYFNSWN-----------------A  247 (430)
T ss_dssp             EEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE------ECSSCCCEEECTTTCC-EEEEETT-----------------T
T ss_pred             EEEEEeCCCCcccceEEEEeCCCceeeeeeec------cCCCceEEEEeCCCCE-EEEEECC-----------------C
Confidence            599998632     366677654432  1221      245789999999 787 9999765                 4


Q ss_pred             ceEEEEeCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecC------------
Q 018242          181 GRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQL------------  244 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~------------  244 (359)
                      +.|++++++++....+.  .....|+++++++++++|||++..+++|++++.+..  .......+...            
T Consensus       248 ~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~  327 (430)
T 3tc9_A          248 GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK  327 (430)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGG
T ss_pred             CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCc
Confidence            58999999877653322  234579999999999999999999999999987642  11111222211            


Q ss_pred             ---CCCCC-ceEE--------CCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEEC
Q 018242          245 ---PGFPD-NIKR--------SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRIS  312 (359)
Q Consensus       245 ---~~~p~-~i~~--------d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (359)
                         -..|. ++++        |++|+||++...++                                       .+.+++
T Consensus       328 ~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~---------------------------------------~I~~i~  368 (430)
T 3tc9_A          328 KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH---------------------------------------CIRILT  368 (430)
T ss_dssp             GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT---------------------------------------EEEEEC
T ss_pred             ceEeCCCcceEEEccccccccCCCCeEEEEECCCc---------------------------------------EEEEEC
Confidence               01366 6777        56799999998654                                       344555


Q ss_pred             CCCCEEEEEEc----c----CC-----ceeeceEEEEEe--CCEEEEecCCCCeEEEEcCCC
Q 018242          313 EQGNVLEILEE----I----GR-----KMWRSISEVEEK--DGNLWIGSVNMPYAGLYNYSS  359 (359)
Q Consensus       313 ~~g~~~~~~~~----~----~g-----~~~~~~~~~~~~--~g~l~ig~~~~~~l~~~~~~~  359 (359)
                      ++|.+......    .    +|     ..+..+.++..+  ++.||++...+++|.+++++.
T Consensus       369 ~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e~  430 (430)
T 3tc9_A          369 PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYEE  430 (430)
T ss_dssp             TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEECC
T ss_pred             CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccCC
Confidence            55544333322    0    12     124467777766  589999999999999998763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.81  E-value=3.1e-18  Score=158.91  Aligned_cols=211  Identities=16%  Similarity=0.142  Sum_probs=155.0

Q ss_pred             eCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           30 IEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        30 ~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      +..+..|.++++++ +++++|++..+++|+++++++...+.+.                    ......|.|+++++.++
T Consensus       112 ~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~--------------------~~~~~~p~glavd~~~g  171 (386)
T 3v65_B          112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV--------------------STGLESPGGLAVDWVHD  171 (386)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE--------------------CSSCSCCCCEEEETTTT
T ss_pred             ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE--------------------eCCCCCccEEEEEeCCC
Confidence            34577899999995 6777888999999999999886444331                    22234688999998789


Q ss_pred             eEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          109 DLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       109 ~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      +||+++... .|.++++++...+.+..    .....|++|++||++++||++|.+.                .+.|++++
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~~----------------~~~I~r~~  231 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWGN----------------TPRIEASS  231 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECSS----------------SCEEEEEE
T ss_pred             eEEEEcCCCCeEEEEeCCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccCC----------------CCEEEEEe
Confidence            999998754 68899988765444432    1345789999998766699997641                25799999


Q ss_pred             CCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEec
Q 018242          188 PATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       188 ~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      +++...+.+ ...+..|+||+++++++.|||+++..++|+++++++..   .+.+.. ....|.+|+++ +++||++.+.
T Consensus       232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~  307 (386)
T 3v65_B          232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH  307 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred             CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCC
Confidence            986544444 35577899999999888999999999999999986532   233332 23469999995 5679999987


Q ss_pred             CCCccccccccCC-ccceeeecCCc
Q 018242          266 RRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       266 ~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      .+.     +..++ .+|+....+..
T Consensus       308 ~~~-----V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          308 TKS-----INSANKFTGKNQEIIRN  327 (386)
T ss_dssp             TTE-----EEEEETTTCCSCEEEEC
T ss_pred             CCe-----EEEEECCCCcceEEEcc
Confidence            765     55554 46665554443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.81  E-value=7.7e-18  Score=148.14  Aligned_cols=208  Identities=13%  Similarity=0.138  Sum_probs=148.9

Q ss_pred             CCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..|++++++++ ++++|++...+.|+++++++.....+                    .......|.++++++++++||+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~--------------------~~~~~~~p~~ia~d~~~~~lyv   95 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--------------------IRQDLGSPEGIALDHLGRTIFW   95 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--------------------ECTTCCCEEEEEEETTTTEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE--------------------EECCCCCccEEEEEecCCeEEE
Confidence            57899999985 56666777789999999987633322                    1122356899999987799999


Q ss_pred             EeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ++... .|.+++.++...+.+...    ....|+++++|+++++||+++...               ..+.|+++++++.
T Consensus        96 ~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~~---------------~~~~I~~~~~dg~  156 (267)
T 1npe_A           96 TDSQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGT  156 (267)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSC
T ss_pred             EECCCCEEEEEEcCCCCEEEEEEC----CCCCccEEEEeeCCCEEEEEECCC---------------CCcEEEEEecCCC
Confidence            98754 699999987654443321    235789999999655599997531               1357889888754


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCcc
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI  270 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~  270 (359)
                      ..+.+. .....|++++++++++.|||++...++|+++++++.   ....+......|.++++| ++++|++.+.++.  
T Consensus       157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~--  230 (267)
T 1npe_A          157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS--  230 (267)
T ss_dssp             CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEEEE-TTEEEEEETTTTE--
T ss_pred             CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEecCCCCceEEEEe-CCEEEEEECCCCe--
Confidence            444433 456689999999998899999999999999997642   222333333468999998 5889999987664  


Q ss_pred             ccccccCCc-cceeeecCCc
Q 018242          271 SKLVLSFPW-IGNVLIKLPI  289 (359)
Q Consensus       271 ~~~~~~~~~-~g~~~~~~~~  289 (359)
                         +.++++ .|+.++.++.
T Consensus       231 ---v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          231 ---VIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             ---EEEEETTTTEEEEEECC
T ss_pred             ---EEEEeCCCCCceEEEcc
Confidence               555554 4676666654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.80  E-value=1.2e-17  Score=150.69  Aligned_cols=207  Identities=13%  Similarity=0.119  Sum_probs=148.4

Q ss_pred             CCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCC----cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           31 EGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQ----RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        31 ~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      +.+..|++++++++ ++++|++..+++|+++++++    .....+                    +......|.||++|+
T Consensus        27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--------------------~~~~~~~p~glavd~   86 (316)
T 1ijq_A           27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--------------------ISRDIQAPDGLAVDW   86 (316)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--------------------ECSSCSCCCEEEEET
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--------------------EeCCCCCcCEEEEee
Confidence            45678999999975 67788888889999999886    211111                    112235689999997


Q ss_pred             CCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      .+++||+++.. +.|.++++++...+.+...    ....|+++++||++++||+++.+.                .+.|+
T Consensus        87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~~----------------~~~I~  146 (316)
T 1ijq_A           87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIK  146 (316)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEEE
T ss_pred             cCCeEEEEECCCCEEEEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccCC----------------CCeEE
Confidence            68999999875 4699999987765544431    235789999998655699997541                25799


Q ss_pred             EEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCCCCCceEECCCCCEE
Q 018242          185 KYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGFW  260 (359)
Q Consensus       185 ~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~lw  260 (359)
                      ++++++...+.+. ..+..|+|++++++++.|||+++..++|+++++++..   .+.+..   ....|.+|++|. |++|
T Consensus       147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly  222 (316)
T 1ijq_A          147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVF  222 (316)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEE
T ss_pred             EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEE
Confidence            9998854444443 4577899999999988999999999999999987532   333433   224689999974 7899


Q ss_pred             EEEecCCCccccccccCCc-cceeeec
Q 018242          261 VGIHSRRKGISKLVLSFPW-IGNVLIK  286 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~~-~g~~~~~  286 (359)
                      ++.+..+.     +.++++ +|+....
T Consensus       223 ~~d~~~~~-----V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          223 WTDIINEA-----IFSANRLTGSDVNL  244 (316)
T ss_dssp             EEETTTTE-----EEEEETTTCCCCEE
T ss_pred             EEECCCCe-----EEEEeCCCCcceEE
Confidence            99987665     555543 5554433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.80  E-value=4e-17  Score=149.03  Aligned_cols=211  Identities=16%  Similarity=0.197  Sum_probs=139.9

Q ss_pred             CCCceEEEccCCCeeEEecC---CC--EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           34 IGPESLAFDALGEGPYTGVS---DG--RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~---~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      ..|++++++++|+ +|++..   ++  +|+.++  +++...|+...        .      ........|+++++++ ++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~--------~------~~~~~~~~p~gv~~d~-~g   78 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELT--QDGLIPFPPQS--------G------NAIITFDTVLGIKSDG-NG   78 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEE--TTEEEESCCCC--------S------SCCCCCSCEEEEEECS-SS
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEEC--CCCeecCCCcc--------c------CcccceeEeeEEEEcC-CC
Confidence            6999999999999 676642   23  688887  44444332100        0      0012235689999999 79


Q ss_pred             eEEEEeCC------CcEEEEeCCCCeEEEEeecC--CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          109 DLYIADAY------FGLLKVGPEGGLATAVATQS--EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       109 ~l~v~~~~------~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +||+++..      ..|.++|++++++.......  ...+...+++++++++++++|++|.+..              ..
T Consensus        79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~  144 (343)
T 2qe8_A           79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DK  144 (343)
T ss_dssp             EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GG
T ss_pred             cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CC
Confidence            99999864      57999999988754332211  1123356899999986545999986311              13


Q ss_pred             ceEEEEeCCCCcEEEEeCC------------------------------CCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          181 GRLMKYDPATKQVTVLLGN------------------------------LSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~------------------------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      +.|+++|+++++...+...                              ...++||++++|++.||+++....+|++++.
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            4678888776655443211                              0246899999999999999999999999985


Q ss_pred             C---CCCCcce------eEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCc-cce
Q 018242          231 K---TSKAGTI------EIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGN  282 (359)
Q Consensus       231 ~---~~~~~~~------~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~-~g~  282 (359)
                      +   .......      ..... .+.|+++++|++|++|++....+.     +.++++ +|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~-----V~~~d~~~G~  280 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSA-----IGVITSADRA  280 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTE-----EEEEETTTTE
T ss_pred             HHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCe-----EEEEECCCCC
Confidence            3   1111111      11111 246999999999999999987654     555555 554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=1.4e-17  Score=151.18  Aligned_cols=197  Identities=15%  Similarity=0.107  Sum_probs=136.0

Q ss_pred             CCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           32 GAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ....|++++++++|+ +|++. .++.|.++|+.+.+....-...               ........|.+|++ . ++++
T Consensus        82 ~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g---------------~~~~~~~~p~~i~~-~-~~~l  143 (328)
T 3dsm_A           82 GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECP---------------DMDMESGSTEQMVQ-Y-GKYV  143 (328)
T ss_dssp             CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECT---------------TCCTTTCBCCCEEE-E-TTEE
T ss_pred             CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcC---------------CccccCCCcceEEE-E-CCEE
Confidence            357899999999996 77776 7799999999987544221000               00011126888998 3 8999


Q ss_pred             EEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          111 YIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       111 ~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      |+++.  .+.|.++|++++++......     ...|++++++++|+ +|++..+.... ..+      ....+.|+++|+
T Consensus       144 yv~~~~~~~~v~viD~~t~~~~~~i~~-----g~~p~~i~~~~dG~-l~v~~~~~~~~-~~~------~~~~~~v~~id~  210 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKVVDELTI-----GIQPTSLVMDKYNK-MWTITDGGYEG-SPY------GYEAPSLYRIDA  210 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEEEEEEEC-----SSCBCCCEECTTSE-EEEEBCCBCTT-CSS------CBCCCEEEEEET
T ss_pred             EEEcCCCCCEEEEEECCCCeEEEEEEc-----CCCccceEEcCCCC-EEEEECCCccC-Ccc------ccCCceEEEEEC
Confidence            99986  45699999998876543321     23578999999999 99996542100 000      001357999999


Q ss_pred             CCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-CCCCCceEECC-CCCEEEEE
Q 018242          189 ATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSP-RGGFWVGI  263 (359)
Q Consensus       189 ~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~-~G~lwv~~  263 (359)
                      +++++....  .....|++++++||++.+|+++.   .|+++|.+..+.... .+... ...|++|++|+ +|+||++.
T Consensus       211 ~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~-~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          211 ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR-PFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSS-CSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeee-eeecCCCCceEEEEEcCCCCeEEEEc
Confidence            988766332  22347999999999999999875   799999865543211 11111 35699999998 78999998

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.79  E-value=9e-18  Score=151.50  Aligned_cols=210  Identities=16%  Similarity=0.157  Sum_probs=151.3

Q ss_pred             CCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           31 EGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        31 ~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      +++..|.++++++ +|+++|++...+.|+++++++......                   ........|.|+++++.+++
T Consensus        32 ~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~l~~p~glavd~~~g~   92 (318)
T 3sov_A           32 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-------------------VVVSGLLSPDGLACDWLGEK   92 (318)
T ss_dssp             EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-------------------EEEECCSCCCEEEEETTTTE
T ss_pred             cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-------------------EEcCCCCCccEEEEEcCCCe
Confidence            3345688999997 578888999999999999987521100                   11122356899999987999


Q ss_pred             EEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          110 LYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       110 l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      ||+++... .|.++++++...+.+..    .....|++|++|+.+++||++|.+                ..+.|+++++
T Consensus        93 ly~~d~~~~~I~~~~~dG~~~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~  152 (318)
T 3sov_A           93 LYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGM  152 (318)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEET
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEc
Confidence            99998754 69999998765544432    134578999999865559999754                1357999998


Q ss_pred             CCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecC
Q 018242          189 ATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       189 ~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      ++...+.+ ...+..|+||+++++++.|||+++..++|+++++++..   .+.+.. ....|.++++|. +.+|++.+..
T Consensus       153 dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~glav~~-~~lywtd~~~  228 (318)
T 3sov_A          153 DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFE-DILYWTDWST  228 (318)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSCCSCEEEEEEET-TEEEEEETTT
T ss_pred             CCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc---eEEEecCCCCCceEEEEeC-CEEEEEecCC
Confidence            86444443 35677899999999888999999999999999987532   333433 335699999985 5688888876


Q ss_pred             CCccccccccCCc-cceeeecCC
Q 018242          267 RKGISKLVLSFPW-IGNVLIKLP  288 (359)
Q Consensus       267 ~~~~~~~~~~~~~-~g~~~~~~~  288 (359)
                      +.     +..+++ +|+....+.
T Consensus       229 ~~-----V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          229 HS-----ILACNKYTGEGLREIH  246 (318)
T ss_dssp             TE-----EEEEETTTCCSCEEEE
T ss_pred             Ce-----EEEEECCCCCceEEEe
Confidence            65     555554 566554443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.77  E-value=1.2e-16  Score=148.79  Aligned_cols=210  Identities=13%  Similarity=0.137  Sum_probs=150.7

Q ss_pred             eCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcc----eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           30 IEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRR----WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        30 ~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +..+..|.+|++++ +++++|++..+++|+++++++..    ...                    ........|.||++|
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~--------------------~~~~~~~~p~glavD  167 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--------------------VISRDIQAPDGLAVD  167 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE--------------------EECSSCSCEEEEEEE
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE--------------------EEeCCCCCcccEEEE
Confidence            34567999999997 57778889999999999987631    111                    112234568999999


Q ss_pred             cCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      +.+++||+++... .|.++++++...+.+...    ....|++|++||.+++||++|.+.                .+.|
T Consensus       168 ~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~~----------------~~~I  227 (400)
T 3p5b_L          168 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKI  227 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECSS----------------SCCE
T ss_pred             ecCCceEEEECCCCeEEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCCC----------------CCEE
Confidence            8789999998754 599999998766555431    345789999998655699997641                2479


Q ss_pred             EEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCCCCCceEECCCCCE
Q 018242          184 MKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGF  259 (359)
Q Consensus       184 ~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l  259 (359)
                      ++++.++...+.+ ...+..|+||+++++++.|||+++..++|+++++++..   .+.+..   .-..|.+++++. ++|
T Consensus       228 ~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~~-~~l  303 (400)
T 3p5b_L          228 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKV  303 (400)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEET-TEE
T ss_pred             EEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEeC-CEE
Confidence            9999886544444 35568899999999888999999999999999987642   233332   124588999964 568


Q ss_pred             EEEEecCCCccccccccCC-ccceeeecCC
Q 018242          260 WVGIHSRRKGISKLVLSFP-WIGNVLIKLP  288 (359)
Q Consensus       260 wv~~~~~~~~~~~~~~~~~-~~g~~~~~~~  288 (359)
                      |++.+..+.     +..++ .+|+....+.
T Consensus       304 ywtd~~~~~-----V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          304 FWTDIINEA-----IFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEEESSSCS-----EEEEESSSCCCCEEEE
T ss_pred             EEecCCCCe-----EEEEEcCCCCceEEEe
Confidence            888887665     55554 4666555443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.77  E-value=2.9e-16  Score=137.97  Aligned_cols=229  Identities=14%  Similarity=0.114  Sum_probs=151.8

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPE  125 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~  125 (359)
                      .|+++.. +.|++++.++...+.+..            . .  .+......|.++++++++++||+++... .|.+++++
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~------------~-~--~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~   66 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEA------------K-A--FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH   66 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGC------------E-E--EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred             EEEEEcC-CeEEEEEecCcccccccc------------e-e--eecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecC
Confidence            4555554 489999988753211000            0 0  0111124578999999789999998754 59999998


Q ss_pred             CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCc
Q 018242          126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPN  204 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~  204 (359)
                      ++..+.+..    .....|+++++|++++++|+++..                 .+.|.+++.++...+.+. .....|+
T Consensus        67 g~~~~~~~~----~~~~~p~~ia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~~P~  125 (267)
T 1npe_A           67 GGEPTTIIR----QDLGSPEGIALDHLGRTIFWTDSQ-----------------LDRIEVAKMDGTQRRVLFDTGLVNPR  125 (267)
T ss_dssp             SCCCEEEEC----TTCCCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCCcEEEEE----CCCCCccEEEEEecCCeEEEEECC-----------------CCEEEEEEcCCCCEEEEEECCCCCcc
Confidence            876544332    123578999999975559999764                 347999998754444333 3457899


Q ss_pred             eEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCC-CEEEEEecCCCccccccccCCcc
Q 018242          205 GVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRG-GFWVGIHSRRKGISKLVLSFPWI  280 (359)
Q Consensus       205 gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~  280 (359)
                      +++++++++.+||++..  .++|+++++++..   .+.+.. ....|.++++|+++ +||++....+             
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~-------------  189 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH-------------  189 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTTT-------------
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECCCC-------------
Confidence            99999987889999977  5799999986532   223332 22469999999964 7999987643             


Q ss_pred             ceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCCCeEEEEcCC
Q 018242          281 GNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       281 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                                                .+.+++.++.....+..  +  ...+.++..+++.||++++.++.|.+++.+
T Consensus       190 --------------------------~I~~~~~~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          190 --------------------------RAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             --------------------------EEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             --------------------------EEEEEecCCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence                                      34445555443333222  1  123345556688899988888888888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.76  E-value=1.9e-15  Score=137.22  Aligned_cols=218  Identities=14%  Similarity=0.160  Sum_probs=148.1

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecC-------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVS-------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR   97 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (359)
                      ......+  ..|.+++++++|+.+|++..       ++.|+.||+.+++....                    + .....
T Consensus        34 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--------------------~-~~~~~   90 (353)
T 3vgz_A           34 MLRKAVG--KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA--------------------I-HNDLK   90 (353)
T ss_dssp             EEEEEEE--SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE--------------------E-EESSC
T ss_pred             hhhhhhc--cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE--------------------E-ecCCC
Confidence            3455555  48999999999988888774       45899999988754321                    1 12345


Q ss_pred             ceEEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCc-----cccccceEEEeCCCCEEEEEeCCCccccccce
Q 018242           98 PLGLCFNKTNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGI-----PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHI  171 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~  171 (359)
                      |.+++++++++.+|+++.. +.|..+|.++++...........     ....+++++++++|+++|+++.+         
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---------  161 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG---------  161 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---------
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---------
Confidence            7889999955669998765 45999999988764333221110     11237889999999989998532         


Q ss_pred             eeeeecCCCceEEEEeCCCCcEEEEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec----CCC
Q 018242          172 SVILSGDKTGRLMKYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ----LPG  246 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~  246 (359)
                             ..+.|+.+|+++++...... ....|.+++++||++.+|++.. ++.|++||+...+..  ..+..    ...
T Consensus       162 -------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~--~~~~~~~~~~~~  231 (353)
T 3vgz_A          162 -------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKIL--SRKKLLDDGKEH  231 (353)
T ss_dssp             -------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEE--EEEECCCSSSCC
T ss_pred             -------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEE--EEEEcCCCCCCc
Confidence                   24579999998887765544 4456899999999999898875 679999997654221  11111    122


Q ss_pred             CCCceEECCCCC-EEEEEecCCCccccccccCC-ccceeeecCCc
Q 018242          247 FPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       247 ~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      .+.+++++++|+ +|++....+.     +..++ .+++.+..++.
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~~~~-----v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSKAAE-----VLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESSSSE-----EEEEETTTCCEEEEEEC
T ss_pred             ccceEEECCCCCEEEEEeCCCCE-----EEEEECCCCcEEEEEEc
Confidence            356689999997 7887765443     45554 35666665554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.76  E-value=2.9e-16  Score=158.99  Aligned_cols=239  Identities=11%  Similarity=0.166  Sum_probs=167.5

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe-EEEEe
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD-LYIAD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~-l~v~~  114 (359)
                      -.+++.|++|+ +|+++.+++|.++++.++.++.+......      +      ...........++.++ +++ ||+++
T Consensus       359 V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~------~------~~~l~~~~v~~i~~d~-~g~~lWigt  424 (795)
T 4a2l_A          359 VSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDE------S------ARGIGSNNIKAVYVDE-KKSLVYIGT  424 (795)
T ss_dssp             EEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------------------CCSCSCEEEEEEET-TTTEEEEEE
T ss_pred             eEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCC------c------ccCCCCccEEEEEEcC-CCCEEEEEe
Confidence            35788999999 99999988999999998877776421100      0      0000123456788888 888 99999


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+||+++++++++++.+.......+...+..+..|++|+ ||++..                   ++|+++++++++++
T Consensus       425 ~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-------------------~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          425 HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL-------------------SALVRFNPEQRSFT  484 (795)
T ss_dssp             TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES-------------------SCEEEEETTTTEEE
T ss_pred             CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec-------------------CceeEEeCCCCeEE
Confidence            8789999999998877654321222334678899999999 999932                   36999999988776


Q ss_pred             EEeCC-----C--CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee---cCCCC----CCceEECCCCCEE
Q 018242          195 VLLGN-----L--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA---QLPGF----PDNIKRSPRGGFW  260 (359)
Q Consensus       195 ~~~~~-----~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~----p~~i~~d~~G~lw  260 (359)
                      .+...     .  .....++.+++|+ +|++..  ++|++++.+....    .+.   ...++    ...|+.|++|+||
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lW  557 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIW  557 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred             EccccccccccCCceEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence            65321     1  2235677777776 676654  6899998754322    121   11122    2347889999999


Q ss_pred             EEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-C
Q 018242          261 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-D  339 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~  339 (359)
                      +++..                                         ++.+++++...+..|...+|++...+..+..+ +
T Consensus       558 igT~~-----------------------------------------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~  596 (795)
T 4a2l_A          558 VGTRE-----------------------------------------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSF  596 (795)
T ss_dssp             EEESS-----------------------------------------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTT
T ss_pred             EEeCC-----------------------------------------CceeECCCCCcEEEeCCCCCCchhheEEEEECCC
Confidence            99863                                         36678877777777776778777777777766 7


Q ss_pred             CEEEEecCCCCeEEEEcCC
Q 018242          340 GNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       340 g~l~ig~~~~~~l~~~~~~  358 (359)
                      |+||+++  .++|.+++..
T Consensus       597 g~lWi~t--~~Gl~~~~~~  613 (795)
T 4a2l_A          597 GRLWLST--NRGISCFNPE  613 (795)
T ss_dssp             SCEEEEE--TTEEEEEETT
T ss_pred             CCEEEEc--CCceEEEcCC
Confidence            8999999  4678887754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.76  E-value=3.7e-16  Score=138.63  Aligned_cols=196  Identities=13%  Similarity=0.162  Sum_probs=140.1

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...|.+++++++|+ +|++. .+++|++++++ ++++.+.                   .......|.++++++ ++++|
T Consensus        56 ~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~-------------------~~~~~~~~~~i~~~~-~g~l~  113 (299)
T 2z2n_A           56 DAKVMCLTISSDGE-VWFTENAANKIGRITKK-GIIKEYT-------------------LPNPDSAPYGITEGP-NGDIW  113 (299)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEE-------------------CSSTTCCEEEEEECT-TSCEE
T ss_pred             cCceeeEEECCCCC-EEEeCCCCCeEEEECCC-CcEEEEe-------------------CCCcCCCceeeEECC-CCCEE
Confidence            46899999999999 66554 46899999987 4454442                   111234588999998 89999


Q ss_pred             EEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +++.. ++|.++++ +++...+...   .....+++++++++|+ +|+++..                 .+.|+++++ +
T Consensus       114 v~~~~~~~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~-~  170 (299)
T 2z2n_A          114 FTEMNGNRIGRITD-DGKIREYELP---NKGSYPSFITLGSDNA-LWFTENQ-----------------NNAIGRITE-S  170 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECS---STTCCEEEEEECTTSC-EEEEETT-----------------TTEEEEECT-T
T ss_pred             EEecCCceEEEECC-CCCEEEecCC---CCCCCCceEEEcCCCC-EEEEeCC-----------------CCEEEEEcC-C
Confidence            99764 46999999 5555443221   1234688999999999 9999543                 357999999 5


Q ss_pred             CcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecC
Q 018242          191 KQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       191 ~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      +++..+.  .....|.+++++++++ +|++....++|.+++. ..   ....+..  ....|.++++|++|++|+++...
T Consensus       171 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  245 (299)
T 2z2n_A          171 GDITEFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SG---EITEFKIPTPNARPHAITAGAGIDLWFTEWGA  245 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CcEEEeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CC---cEEEEECCCCCCCceeEEECCCCCEEEeccCC
Confidence            6666542  2345688999999987 8999888899999986 32   2222221  22457889999999999998654


Q ss_pred             CCccccccccCCcccee
Q 018242          267 RKGISKLVLSFPWIGNV  283 (359)
Q Consensus       267 ~~~~~~~~~~~~~~g~~  283 (359)
                      +.     +.++++++++
T Consensus       246 ~~-----i~~~d~~g~~  257 (299)
T 2z2n_A          246 NK-----IGRLTSNNII  257 (299)
T ss_dssp             TE-----EEEEETTTEE
T ss_pred             ce-----EEEECCCCce
Confidence            43     6666666653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.75  E-value=5.9e-16  Score=141.71  Aligned_cols=218  Identities=16%  Similarity=0.108  Sum_probs=134.2

Q ss_pred             CEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        24 ~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      .+.+++ .++..|++|+++++|+ +|++...++|++++ ++ +...+...+               ........|.||++
T Consensus        22 ~~~~va-~~l~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g-~~~~~~~~~---------------v~~~g~~~p~gia~   82 (352)
T 2ism_A           22 RVEEVV-GGLEVPWALAFLPDGG-MLIAERPGRIRLFR-EG-RLSTYAELS---------------VYHRGESGLLGLAL   82 (352)
T ss_dssp             CEEEEE-CCCSCEEEEEECTTSC-EEEEETTTEEEEEE-TT-EEEEEEECC---------------CCCSTTCSEEEEEE
T ss_pred             EEEEEE-CCCCCceEEEEcCCCe-EEEEeCCCeEEEEE-CC-CccEeecce---------------EeecCCCCceeEEE
Confidence            344444 4689999999999999 78777779999998 43 334332111               11122356899999


Q ss_pred             ecC---CCeEEEEeCC------CcEEEEeCCCCeE---EEEeecCC--CccccccceEEEeCCCCEEEEEeCCCcccccc
Q 018242          104 NKT---NGDLYIADAY------FGLLKVGPEGGLA---TAVATQSE--GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN  169 (359)
Q Consensus       104 ~~~---~g~l~v~~~~------~~i~~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~  169 (359)
                      +++   ++.||+++..      +.|.+++.+++.+   +.+....+  ......+++|++++||+ ||+++...... . 
T Consensus        83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~-~-  159 (352)
T 2ism_A           83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYER-E-  159 (352)
T ss_dssp             CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCG-G-
T ss_pred             CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCC-c-
Confidence            995   5899999753      5699998876532   22322222  22345778999999998 99996431100 0 


Q ss_pred             ceeeeeecCCCceEEEEeCCC-------------CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCE--------EEEE
Q 018242          170 HISVILSGDKTGRLMKYDPAT-------------KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR--------ILRY  228 (359)
Q Consensus       170 ~~~~~~~~~~~g~v~~~d~~~-------------~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~--------i~~~  228 (359)
                      .  ........++|+++++++             ...+.+..+...|+|++++++...||+++...+.        |.++
T Consensus       160 ~--~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i  237 (352)
T 2ism_A          160 L--AQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI  237 (352)
T ss_dssp             G--GGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE
T ss_pred             c--ccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe
Confidence            0  000112357899999985             1233444566789999999954459999988776        4444


Q ss_pred             EcCCCCCcc------------eeEeec--CCCCCCceEECCCCCEEEEEecCC
Q 018242          229 WLKTSKAGT------------IEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       229 ~~~~~~~~~------------~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .. +...+.            ......  ....|.++++ .+|++|++...++
T Consensus       238 ~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~  288 (352)
T 2ism_A          238 VP-GGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQ  288 (352)
T ss_dssp             CT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTTT
T ss_pred             cc-CCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCCC
Confidence            31 111100            000111  1224778888 5788999887544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.75  E-value=1.7e-15  Score=138.46  Aligned_cols=232  Identities=15%  Similarity=0.107  Sum_probs=158.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.+.+.++++. ++++.. +.|.++++++.....+                     ......|.++++++.++.||+++.
T Consensus        36 ~~C~~~~~~~~-ll~~~~-~~I~~i~~~g~~~~~~---------------------~~~~~~~~~l~~d~~~~~ly~~D~   92 (349)
T 3v64_C           36 RSCKALGPEPV-LLFANR-IDIRQVLPHRSEYTLL---------------------LNNLENAIALDFHHRRELVFWSDV   92 (349)
T ss_dssp             SCEEESSSCCE-EEEECB-SCEEEECTTSCCEEEE---------------------ECSCSCEEEEEEETTTTEEEEEET
T ss_pred             CcccccccCce-eEeecc-cceEEEeCCCCeeEEe---------------------ecCCCceEEEEEeccccEEEEEec
Confidence            34555555554 555544 4699999887644432                     123345899999987999999986


Q ss_pred             CC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          116 YF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       116 ~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      .. .|++++++++..+.+...    ....|.++++|+.++.||++|..                 .+.|.++++++...+
T Consensus        93 ~~~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           93 TLDRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRK  151 (349)
T ss_dssp             TTTEEEEEETTSCSCEEEECS----SCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCE
T ss_pred             cCCceEEEecCCCCceEEEeC----CCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceE
Confidence            54 599999998765554321    23468899999755459999765                 347999998865444


Q ss_pred             EEe-CCCCCCceEEEccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEeec-CCCCCCceEECC-CCCEEEEEecCCCcc
Q 018242          195 VLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHSRRKGI  270 (359)
Q Consensus       195 ~~~-~~~~~p~gia~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwv~~~~~~~~~  270 (359)
                      .+. ..+..|++++++|+++.+||++... ++|+++++++..   .+.+.. .-..|++|++|+ +++||++....+   
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~---  225 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH---  225 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTT---
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCC---
Confidence            433 4567899999999888899999988 999999987642   222222 224599999996 668999987543   


Q ss_pred             ccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCCC
Q 018242          271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMP  350 (359)
Q Consensus       271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~  350 (359)
                                                          .+.+++.+|...+.+... +  ...+.++...+++||++.+.+.
T Consensus       226 ------------------------------------~I~~~~~dG~~~~~~~~~-~--~~~P~giav~~~~ly~td~~~~  266 (349)
T 3v64_C          226 ------------------------------------VIERANLDGSHRKAVISQ-G--LPHPFAITVFEDSLYWTDWHTK  266 (349)
T ss_dssp             ------------------------------------EEEEEETTSCSCEEEECS-S--CSSEEEEEEETTEEEEEETTTT
T ss_pred             ------------------------------------EEEEEeCCCCceEEEEeC-C--CCCceEEEEECCEEEEecCCCC
Confidence                                                344555555433332221 1  2344555557788888888888


Q ss_pred             eEEEEc
Q 018242          351 YAGLYN  356 (359)
Q Consensus       351 ~l~~~~  356 (359)
                      .|.+++
T Consensus       267 ~V~~~~  272 (349)
T 3v64_C          267 SINSAN  272 (349)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            888776

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=3.3e-16  Score=158.26  Aligned_cols=276  Identities=14%  Similarity=0.124  Sum_probs=178.3

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ..+|..|++|. +|+++.+++|.++++.+..++.+...+..     .+      ...........++.++ +|+||+++.
T Consensus       315 v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-----~~------~~~l~~~~v~~i~~d~-~g~lWigt~  381 (781)
T 3v9f_A          315 ARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-----MN------ESSLSNKVVSSVCDDG-QGKLWIGTD  381 (781)
T ss_dssp             EEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C-----CC------SSCCSSSCEEEEEECT-TSCEEEEEB
T ss_pred             EEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc-----cc------cCCCCCcceEEEEEcC-CCCEEEEeC
Confidence            35789999999 99999888999999988777766421100     00      0001123356788887 899999987


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+||.+++++++.++.+.. ........+..++.|++|+ ||++..                  .++|+++++++++++.
T Consensus       382 ~~Gl~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~d~~g~-lWigt~------------------~~Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          382 GGGINVFENGKRVAIYNKE-NRELLSNSVLCSLKDSEGN-LWFGTY------------------LGNISYYNTRLKKFQI  441 (781)
T ss_dssp             SSCEEEEETTEEEEECC------CCCSBEEEEEECTTSC-EEEEET------------------TEEEEEECSSSCEEEE
T ss_pred             CCcEEEEECCCCeEEEccC-CCCCCCcceEEEEECCCCC-EEEEec------------------cCCEEEEcCCCCcEEE
Confidence            7899999998776554321 1122335678899999999 999932                  3579999998887776


Q ss_pred             EeCC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC------CCCCCceEECCCCCEEEEEecC
Q 018242          196 LLGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL------PGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       196 ~~~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      +...   ......++.+++++ +|++. . ++|++++......   ..+...      ...+..++.|++|+||+++.+.
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~-lwigt-~-~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~  515 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKK-IWIGT-H-AGVFVIDLASKKV---IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG  515 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSE-EEEEE-T-TEEEEEESSSSSC---CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred             eccCCCCCCeEEEEEECCCCC-EEEEE-C-CceEEEeCCCCeE---EecccCcccccccceeEEEEEcCCCCEEEEEcCC
Confidence            5431   12345666676664 66664 4 6899999754432   222221      1234558899999999999755


Q ss_pred             CCccccccccCCccceeeecCCc----cceeeeeecccccCc-----ceEE-EEECCCCCEEEEEEccCCceeeceEEEE
Q 018242          267 RKGISKLVLSFPWIGNVLIKLPI----DIVKIHSSLVKLSGN-----GGMA-MRISEQGNVLEILEEIGRKMWRSISEVE  336 (359)
Q Consensus       267 ~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~~~~~~~~~g~~~~~~~~~~  336 (359)
                      +      +.++++..+.+..+..    +...+.+++.+....     ..++ .+++++.+.+..|...+|++...+.++.
T Consensus       516 G------l~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~  589 (781)
T 3v9f_A          516 G------VGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAIS  589 (781)
T ss_dssp             C------EEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEE
T ss_pred             C------EEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEE
Confidence            5      6666655443333321    112222332221111     0245 8889887777888777888777777776


Q ss_pred             Ee-CCEEEEecCCCCeEEEEcCC
Q 018242          337 EK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       337 ~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      .+ +|+||+++  .++|.++++.
T Consensus       590 ~d~~g~lW~~t--~~Gl~~~~~~  610 (781)
T 3v9f_A          590 EDKNGNIWAST--NTGISCYITS  610 (781)
T ss_dssp             ECSSSCEEEEC--SSCEEEEETT
T ss_pred             ECCCCCEEEEc--CCceEEEECC
Confidence            66 89999998  4568887754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.75  E-value=2.8e-16  Score=154.07  Aligned_cols=198  Identities=17%  Similarity=0.167  Sum_probs=151.4

Q ss_pred             EEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .++.+++..|.+|++++ +|+++|++..+++|+++++++...+.+.                    ......|.||++|.
T Consensus        30 ~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~--------------------~~g~~~P~GlAvD~   89 (628)
T 4a0p_A           30 AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV--------------------EFGLDYPEGMAVDW   89 (628)
T ss_dssp             ECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------------------CSSCSCCCEEEEET
T ss_pred             EEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE--------------------eCCCCCcceEEEEe
Confidence            44555677899999997 5777788899999999999876444321                    22235689999998


Q ss_pred             CCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      .+++||+++... .|.++++++...+.+..    .....|++|++||...+||++|.+.                .+.|+
T Consensus        90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g~----------------~~~I~  149 (628)
T 4a0p_A           90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWGG----------------KPKID  149 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECSS----------------SCEEE
T ss_pred             CCCEEEEEECCCCEEEEEecCCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCCC----------------CCEEE
Confidence            789999998754 58999998776554432    1345789999998544499998641                35799


Q ss_pred             EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242          185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      ++++++...+.+...+..|+||+++++++.|||++...+.|+++++++...   +.+......|.+++++. +++|++.+
T Consensus       150 r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l~~P~glav~~-~~ly~tD~  225 (628)
T 4a0p_A          150 RAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDLPHPFGLTQYQ-DYIYWTDW  225 (628)
T ss_dssp             EEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECCSCEEEEEEET-TEEEEEET
T ss_pred             EEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce---EEeeccCCCceEEEEEC-CEEEEecC
Confidence            999987666666677889999999999889999999999999999876432   34444334589999986 78999998


Q ss_pred             cCCC
Q 018242          265 SRRK  268 (359)
Q Consensus       265 ~~~~  268 (359)
                      ..+.
T Consensus       226 ~~~~  229 (628)
T 4a0p_A          226 SRRS  229 (628)
T ss_dssp             TTTE
T ss_pred             CCCE
Confidence            7664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.75  E-value=2.1e-15  Score=133.80  Aligned_cols=197  Identities=13%  Similarity=0.180  Sum_probs=141.6

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...|.+|+++++|+ +|++. .+++|+++|++ +++..+..                   ......|.++++++ ++++|
T Consensus        61 ~~~~~~i~~~~~g~-l~v~~~~~~~v~~~d~~-g~~~~~~~-------------------~~~~~~~~~i~~~~-~g~l~  118 (300)
T 2qc5_A           61 DAKVMCLIVSSLGD-IWFTENGANKIGKLSKK-GGFTEYPL-------------------PQPDSGPYGITEGL-NGDIW  118 (300)
T ss_dssp             TCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEC-------------------SSTTCCEEEEEECS-TTCEE
T ss_pred             CCcceeEEECCCCC-EEEEecCCCeEEEECCC-CCeEEecC-------------------CCCCCCCccceECC-CCCEE
Confidence            47899999999999 56554 46899999998 55554421                   11225588999998 89999


Q ss_pred             EEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          112 IADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       112 v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +++.. ++|++++++ +++..+..  . .....|++++++++|+ +|+++..                 .+.|++++++ 
T Consensus       119 v~~~~~~~i~~~~~~-g~~~~~~~--~-~~~~~~~~i~~d~~g~-l~v~~~~-----------------~~~i~~~~~~-  175 (300)
T 2qc5_A          119 FTQLNGDRIGKLTAD-GTIYEYDL--P-NKGSYPAFITLGSDNA-LWFTENQ-----------------NNSIGRITNT-  175 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEC--S-STTCCEEEEEECTTSS-EEEEETT-----------------TTEEEEECTT-
T ss_pred             EEccCCCeEEEECCC-CCEEEccC--C-CCCCCceeEEECCCCC-EEEEecC-----------------CCeEEEECCC-
Confidence            99864 579999998 55544321  1 1235788999999999 9999643                 3479999984 


Q ss_pred             CcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecC
Q 018242          191 KQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       191 ~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      +++..+.  .....|.+++++++++ +|++....++|.+++.++    ....+..  ....|.++++|++|+||+++...
T Consensus       176 g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  250 (300)
T 2qc5_A          176 GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKIGRITTTG----EISEYDIPTPNARPHAITAGKNSEIWFTEWGA  250 (300)
T ss_dssp             CCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred             CcEEEeeCCCCCCCcceEEECCCCC-EEEEccCCCEEEEEcCCC----cEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence            5655443  2345789999999886 899998888999998632    2222211  12357889999999999999764


Q ss_pred             CCccccccccCCccceee
Q 018242          267 RKGISKLVLSFPWIGNVL  284 (359)
Q Consensus       267 ~~~~~~~~~~~~~~g~~~  284 (359)
                      +.     +.++++.+++.
T Consensus       251 ~~-----i~~~~~~g~~~  263 (300)
T 2qc5_A          251 NQ-----IGRITNDNTIQ  263 (300)
T ss_dssp             TE-----EEEECTTSCEE
T ss_pred             Ce-----EEEECCCCcEE
Confidence            44     66666666543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.74  E-value=8.1e-16  Score=140.77  Aligned_cols=176  Identities=13%  Similarity=0.132  Sum_probs=116.3

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +++++ .++..|++|+++++|+ +|++...++|++++.++ + +.+...+               ........|.||+++
T Consensus        21 ~~~va-~~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G-~-~~~~~~~---------------v~~~g~~g~~gia~~   81 (354)
T 3a9g_A           21 ISEVA-SDLEVPWSIAPLGGGR-YLVTERPGRLVLISPSG-K-KLVASFD---------------VANVGEAGLLGLALH   81 (354)
T ss_dssp             EEEEE-CSCSCEEEEEEEETTE-EEEEETTTEEEEECSSC-E-EEEEECC---------------CCCSTTCSEEEEEEC
T ss_pred             EEEEe-CCCCCCeEEEEcCCCe-EEEEeCCCEEEEEeCCC-c-eEeeccc---------------eeecCCCceeeEEeC
Confidence            33444 4689999999999999 88877779999998654 3 3332110               011223568999999


Q ss_pred             cC---CCeEEEEeCC--------CcEEEEeCCCC--e---EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccc
Q 018242          105 KT---NGDLYIADAY--------FGLLKVGPEGG--L---ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR  168 (359)
Q Consensus       105 ~~---~g~l~v~~~~--------~~i~~~~~~~~--~---~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~  168 (359)
                      ++   ++.||++...        +.|.+++.+++  .   .+.+....+......+++|++++||+ ||+++...... .
T Consensus        82 pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~-~  159 (354)
T 3a9g_A           82 PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADP-R  159 (354)
T ss_dssp             TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCG-G
T ss_pred             CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCC-c
Confidence            96   6999998753        56999987765  1   22232212222345688999999999 99995321100 0


Q ss_pred             cceeeeeecCCCceEEEEeCCCC--------cEEEEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242          169 NHISVILSGDKTGRLMKYDPATK--------QVTVLLGNLSFPNGVALSEDGNYILLAETTSCR  224 (359)
Q Consensus       169 ~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~  224 (359)
                      .   ........++|+++++++.        ..+.+..+...|+|++++++...||+++...+.
T Consensus       160 ~---~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~  220 (354)
T 3a9g_A          160 L---AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG  220 (354)
T ss_dssp             G---GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSS
T ss_pred             c---ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCC
Confidence            0   0001123578999999853        234556677889999999944459999988765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.74  E-value=3.8e-15  Score=138.06  Aligned_cols=230  Identities=14%  Similarity=0.103  Sum_probs=157.0

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      +.+.++++. ++++.. ..|.++++++.....+                     ......|.++++++.++.||+++...
T Consensus        81 C~~~~~~~~-l~~~~~-~~I~~i~~~~~~~~~~---------------------~~~~~~~~gl~~d~~~~~ly~~D~~~  137 (386)
T 3v65_B           81 CKALGPEPV-LLFANR-IDIRQVLPHRSEYTLL---------------------LNNLENAIALDFHHRRELVFWSDVTL  137 (386)
T ss_dssp             EEECSSCCE-EEEECB-SCEEEECTTSCCCEEE---------------------ECSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ECCccccce-eEeecC-ccceeeccCCCcEEEE---------------------ecCCCccEEEEEecCCCeEEEEeCCC
Confidence            444445444 444444 5689998887644332                     12335689999998789999998754


Q ss_pred             -cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          118 -GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       118 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                       .|++++++++..+.+...    ....|.+|++|+.++.||++|..                 .+.|.++++++...+.+
T Consensus       138 ~~I~r~~~~g~~~~~~~~~----~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l  196 (386)
T 3v65_B          138 DRILRANLNGSNVEEVVST----GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVL  196 (386)
T ss_dssp             TEEEEEETTSCCEEEEECS----SCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEE
T ss_pred             CcEEEEecCCCCcEEEEeC----CCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEe
Confidence             599999998776554321    23478899999765559999765                 34789999876544443


Q ss_pred             -eCCCCCCceEEEccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEeec-CCCCCCceEECC-CCCEEEEEecCCCcccc
Q 018242          197 -LGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHSRRKGISK  272 (359)
Q Consensus       197 -~~~~~~p~gia~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwv~~~~~~~~~~~  272 (359)
                       ...+..|++|+++|+++.|||++... ++|+++++++..   ...+.. .-..|++|++|+ +++||++....+     
T Consensus       197 ~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~-----  268 (386)
T 3v65_B          197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH-----  268 (386)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTT-----
T ss_pred             ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCC-----
Confidence             34567899999999888899999988 899999987542   223332 224599999995 568999987543     


Q ss_pred             ccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCCCeE
Q 018242          273 LVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYA  352 (359)
Q Consensus       273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l  352 (359)
                                                        .+.+++.+|...+.+.. .+  ...+.++...++.||++.+.+.+|
T Consensus       269 ----------------------------------~I~~~d~dG~~~~~~~~-~~--~~~P~giav~~~~ly~td~~~~~V  311 (386)
T 3v65_B          269 ----------------------------------VIERANLDGSHRKAVIS-QG--LPHPFAITVFEDSLYWTDWHTKSI  311 (386)
T ss_dssp             ----------------------------------EEEEECTTSCSCEEEEC-SS--CSSEEEEEEETTEEEEEETTTTEE
T ss_pred             ----------------------------------EEEEEeCCCCeeEEEEE-CC--CCCceEEEEECCEEEEeeCCCCeE
Confidence                                              34555555543333222 11  234455555777888888888888


Q ss_pred             EEEc
Q 018242          353 GLYN  356 (359)
Q Consensus       353 ~~~~  356 (359)
                      .+++
T Consensus       312 ~~~~  315 (386)
T 3v65_B          312 NSAN  315 (386)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=1.2e-15  Score=143.73  Aligned_cols=248  Identities=15%  Similarity=0.111  Sum_probs=164.4

Q ss_pred             CCCCCCceEEEccC--CCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE----
Q 018242           31 EGAIGPESLAFDAL--GEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF----  103 (359)
Q Consensus        31 ~~~~~p~~i~~~~~--G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~----  103 (359)
                      ..+..|.+|++||.  ++ ||++.. .++|.++|++++.++.+....                 ......|.+|++    
T Consensus       136 ~~~~~p~~la~dp~~~~~-Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----------------~~~~~~p~~ia~~~~~  197 (496)
T 3kya_A          136 CGFSDNGRLAFDPLNKDH-LYICYDGHKAIQLIDLKNRMLSSPLNIN-----------------TIPTNRIRSIAFNKKI  197 (496)
T ss_dssp             BCCCSEEEEEEETTEEEE-EEEEEETEEEEEEEETTTTEEEEEECCT-----------------TSSCSBEEEEEECCCB
T ss_pred             cccCCCCEEEEccCCCCE-EEEEECCCCeEEEEECCCCEEEEEEccC-----------------ccccCCCcEEEEeecc
Confidence            44668999999983  55 776655 478999999988777653110                 112346999999    


Q ss_pred             ---ecCCCeEEEEeCCC-------cEEEEeCCC-CeEE------EEeecCCCccccccceEEEeCCCCEEEEEeCCCccc
Q 018242          104 ---NKTNGDLYIADAYF-------GLLKVGPEG-GLAT------AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus       104 ---~~~~g~l~v~~~~~-------~i~~~~~~~-~~~~------~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~  166 (359)
                         +++++.||+++..+       .++.++.+. +.+.      .+.      ....|+++++++++++||+++..    
T Consensus       198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~----  267 (496)
T 3kya_A          198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE----  267 (496)
T ss_dssp             TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT----
T ss_pred             cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC----
Confidence               99555699998764       277776544 2331      221      23478999999954449999754    


Q ss_pred             cccceeeeeecCCCceEEEEeCC-------CCcE------------EE-E-eCCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242          167 RRNHISVILSGDKTGRLMKYDPA-------TKQV------------TV-L-LGNLSFPNGVALSEDGNYILLAETTSCRI  225 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~-------~~~~------------~~-~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i  225 (359)
                                   .+.|+++|++       ++..            +. + ......|.+|+++|+++.||++++.+++|
T Consensus       268 -------------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I  334 (496)
T 3kya_A          268 -------------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYF  334 (496)
T ss_dssp             -------------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             -------------CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEE
Confidence                         4579999987       5543            12 2 22345689999999999999999999999


Q ss_pred             EEEEcCCCC--CcceeEeecC---C------------CCCC-ceEEC-------CCCCEEEEEecCCCccccccccCCcc
Q 018242          226 LRYWLKTSK--AGTIEIVAQL---P------------GFPD-NIKRS-------PRGGFWVGIHSRRKGISKLVLSFPWI  280 (359)
Q Consensus       226 ~~~~~~~~~--~~~~~~~~~~---~------------~~p~-~i~~d-------~~G~lwv~~~~~~~~~~~~~~~~~~~  280 (359)
                      ++++.+...  ......+...   .            ..|. ++++|       ++|+|||+...+++     +.+++++
T Consensus       335 ~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~r-----Ir~i~~~  409 (496)
T 3kya_A          335 MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFC-----VRKVTPE  409 (496)
T ss_dssp             EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTE-----EEEECTT
T ss_pred             EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCE-----EEEEeCC
Confidence            998875431  1111222211   1            1377 67887       67899999987654     4444444


Q ss_pred             ceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEc--------------cCC-----ceeeceEEEEEe-C-
Q 018242          281 GNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE--------------IGR-----KMWRSISEVEEK-D-  339 (359)
Q Consensus       281 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~g-----~~~~~~~~~~~~-~-  339 (359)
                      |                                  .+......              .+|     ..+..+.++..+ + 
T Consensus       410 G----------------------------------~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          410 G----------------------------------IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             C----------------------------------BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             C----------------------------------CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            4                                  22222111              011     124567777766 3 


Q ss_pred             CEEEEecCCCCeEEEEcCC
Q 018242          340 GNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       340 g~l~ig~~~~~~l~~~~~~  358 (359)
                      |.|||+...+.+|.++.++
T Consensus       456 g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          456 EMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECC
Confidence            8999999999999998865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=3.5e-16  Score=137.06  Aligned_cols=190  Identities=18%  Similarity=0.314  Sum_probs=136.4

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      .....|.+|+++++|+ +|++..+++|+++|+++.....+.                    ......|.++++++ +|++
T Consensus        64 ~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~~~~~--------------------~~~~~~p~~i~~~~-~g~l  121 (270)
T 1rwi_B           64 NGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLP--------------------FDGLNYPEGLAVDT-QGAV  121 (270)
T ss_dssp             CSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECC--------------------CCSCSSEEEEEECT-TCCE
T ss_pred             CCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceEeeee--------------------cCCcCCCcceEECC-CCCE
Confidence            4457899999999999 666655789999999876433221                    11224588999999 8899


Q ss_pred             EEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          111 YIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       111 ~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      |+++.. +.|.+++..+...... .   ......|++|+++++|+ +|+++..                 .+.|++++++
T Consensus       122 ~v~~~~~~~i~~~~~~~~~~~~~-~---~~~~~~p~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~~  179 (270)
T 1rwi_B          122 YVADRGNNRVVKLAAGSKTQTVL-P---FTGLNDPDGVAVDNSGN-VYVTDTD-----------------NNRVVKLEAE  179 (270)
T ss_dssp             EEEEGGGTEEEEECTTCCSCEEC-C---CCSCCSCCCEEECTTCC-EEEEEGG-----------------GTEEEEECTT
T ss_pred             EEEECCCCEEEEEECCCceeEee-c---cccCCCceeEEEeCCCC-EEEEECC-----------------CCEEEEEecC
Confidence            999764 4688997655443221 1   11234789999999999 9999643                 3579999998


Q ss_pred             CCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-CCCCCceEECCCCCEEEEEecCC
Q 018242          190 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       190 ~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ++...... .....|.+++++++|+ +|+++..+++|.+|+.++...   ...... ...|.++++|++|++|+++..++
T Consensus       180 ~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  255 (270)
T 1rwi_B          180 SNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRGND  255 (270)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred             CCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence            76554432 3346789999999984 999999889999998754321   111111 13588999999999999998765


Q ss_pred             C
Q 018242          268 K  268 (359)
Q Consensus       268 ~  268 (359)
                      .
T Consensus       256 ~  256 (270)
T 1rwi_B          256 R  256 (270)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=2.8e-16  Score=142.54  Aligned_cols=214  Identities=15%  Similarity=0.230  Sum_probs=142.9

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      +.+..|.+++++++|++|+++..++.|.+||+++.  ....+....        ..+    ........|.+|+++++++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~--------~~g----~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM--------QPG----SDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT--------BCC----CSTTCCSSEEEEEECTTTC
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC--------CCC----CCccccCCCcEEEEeCCCC
Confidence            45679999999999995556677899999999875  233332110        000    0012234699999998789


Q ss_pred             eEEEEeC--CCcEEEEeCCCCeEEEEeecCC-----CccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCC
Q 018242          109 DLYIADA--YFGLLKVGPEGGLATAVATQSE-----GIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       109 ~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ++|+++.  .+.|.+++.++.....+.....     ...+..|++|+++++ |+ |||++..                 .
T Consensus       156 ~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~-l~v~d~~-----------------~  217 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ-LCVADRE-----------------N  217 (329)
T ss_dssp             CEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE-EEEEETT-----------------T
T ss_pred             eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE-EEEEECC-----------------C
Confidence            9999985  4569999977665544432211     124557999999999 66 9999765                 4


Q ss_pred             ceEEEEeCCCCcEEEEeC---CCCCCceEEEcc------CCCEEEEEecCCCEEEEEEcCCCCCcceeEee---cCCCCC
Q 018242          181 GRLMKYDPATKQVTVLLG---NLSFPNGVALSE------DGNYILLAETTSCRILRYWLKTSKAGTIEIVA---QLPGFP  248 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~---~~~~p~gia~~~------d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~p  248 (359)
                      +.|.+|+++++++.....   ....+.++++.|      +++ +|+++....++.+|+....+.  ...+.   .....|
T Consensus       218 ~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p  294 (329)
T 3fvz_A          218 GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMP  294 (329)
T ss_dssp             TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSE
T ss_pred             CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCe
Confidence            579999998666544331   123455666666      555 666666677899999754422  22222   122358


Q ss_pred             CceEECCCCCEEEEEecCCCccccccccCCccce
Q 018242          249 DNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGN  282 (359)
Q Consensus       249 ~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~  282 (359)
                      .++++|++|+|||+...++.     +.+++.+++
T Consensus       295 ~~ia~~~dG~lyvad~~~~~-----I~~~~~~~~  323 (329)
T 3fvz_A          295 HDIVASEDGTVYIGDAHTNT-----VWKFTLTEK  323 (329)
T ss_dssp             EEEEECTTSEEEEEESSSCC-----EEEEEEEEC
T ss_pred             eEEEECCCCCEEEEECCCCE-----EEEEeCCcc
Confidence            89999999999999987765     666655543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.73  E-value=7.8e-15  Score=132.27  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=147.6

Q ss_pred             eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCCC
Q 018242           48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPEG  126 (359)
Q Consensus        48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~  126 (359)
                      |+++.. ..|.++|+++.+...+                     ......|.+++++++++.||+++.. +.|+++++++
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~---------------------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g   61 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSL---------------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEE---------------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEECC-CeEEEEECCCcceEeh---------------------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCC
Confidence            444444 4589999887644322                     1234568999999878999999875 4699999886


Q ss_pred             ----CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCC
Q 018242          127 ----GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLS  201 (359)
Q Consensus       127 ----~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~  201 (359)
                          ...+.+..    .....|.+|++|+.++.||++|..                 .+.|.++++++...+.+. ....
T Consensus        62 ~~~~~~~~~~~~----~~~~~p~glavd~~~~~ly~~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~  120 (316)
T 1ijq_A           62 AHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGS  120 (316)
T ss_dssp             ------CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTC
T ss_pred             CCCCcccEEEEe----CCCCCcCEEEEeecCCeEEEEECC-----------------CCEEEEEeCCCCceEEEEECCCC
Confidence                22222221    123578899999754449999764                 347999998865555443 4567


Q ss_pred             CCceEEEccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEeec-CCCCCCceEECCC-CCEEEEEecCCCccccccccCC
Q 018242          202 FPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR-GGFWVGIHSRRKGISKLVLSFP  278 (359)
Q Consensus       202 ~p~gia~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~  278 (359)
                      .|++++++|+++.+||++... ++|+++++++..   .+.+.. .-..|++|++|++ ++||++....+           
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~-----------  186 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH-----------  186 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTT-----------
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECCCC-----------
Confidence            899999999888899999875 899999986532   233332 2346999999974 67999986533           


Q ss_pred             ccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCCCeEEEEcC
Q 018242          279 WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       279 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~  357 (359)
                                                  .+.+++.+|...+.+....+ ....+.++..++++||++.+.+.+|.+++.
T Consensus       187 ----------------------------~I~~~d~dg~~~~~~~~~~~-~~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          187 ----------------------------SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             ----------------------------EEEEEETTSCSCEEEEECTT-TTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----------------------------eEEEEecCCCceEEEeecCC-ccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence                                        34445555543333322111 123445555567788888887788877764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=1.3e-15  Score=153.94  Aligned_cols=267  Identities=14%  Similarity=0.124  Sum_probs=175.2

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ..+++.|++|+ +|+++.+++|+++++.++.++.+..+                 ..........++.++ +++||+++.
T Consensus       365 v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~i~~d~-~g~lWigt~  425 (781)
T 3v9f_A          365 VSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKEN-----------------RELLSNSVLCSLKDS-EGNLWFGTY  425 (781)
T ss_dssp             EEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC----------------------CCCSBEEEEEECT-TSCEEEEET
T ss_pred             eEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCC-----------------CCCCCcceEEEEECC-CCCEEEEec
Confidence            45788999999 99999888899999987655443100                 001123456788887 899999987


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+||+++++++++++.+...  ......+..++.|++|+ ||++..                   ++|++++++++++..
T Consensus       426 ~~Gl~~~~~~~~~~~~~~~~--~~~~~~v~~i~~d~~g~-lwigt~-------------------~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          426 LGNISYYNTRLKKFQIIELE--KNELLDVRVFYEDKNKK-IWIGTH-------------------AGVFVIDLASKKVIH  483 (781)
T ss_dssp             TEEEEEECSSSCEEEECCST--TTCCCCEEEEEECTTSE-EEEEET-------------------TEEEEEESSSSSCCE
T ss_pred             cCCEEEEcCCCCcEEEeccC--CCCCCeEEEEEECCCCC-EEEEEC-------------------CceEEEeCCCCeEEe
Confidence            77999999998887665321  22334677899999999 999932                   479999998877665


Q ss_pred             EeCCC------CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC----ceEECCCCCEEEEEec
Q 018242          196 LLGNL------SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD----NIKRSPRGGFWVGIHS  265 (359)
Q Consensus       196 ~~~~~------~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~----~i~~d~~G~lwv~~~~  265 (359)
                      +....      ..+..++.+++|+ +|++ +..++|++++.+..   ..+.+....++|.    .++.|++|+||+++. 
T Consensus       484 ~~~~~~~~~~~~~i~~i~~d~~g~-lWig-t~~~Gl~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-  557 (781)
T 3v9f_A          484 HYDTSNSQLLENFVRSIAQDSEGR-FWIG-TFGGGVGIYTPDMQ---LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-  557 (781)
T ss_dssp             EECTTTSSCSCSCEEEEEECTTCC-EEEE-ESSSCEEEECTTCC---EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-
T ss_pred             cccCcccccccceeEEEEEcCCCC-EEEE-EcCCCEEEEeCCCC---eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-
Confidence            43211      2345777887776 5665 44467999985433   2333332233343    478899999999987 


Q ss_pred             CCCcccccc-ccCCccceeeecCCc----cceeeeeeccccc------CcceEEEEECCCCCEEEEEEccCCceeeceE-
Q 018242          266 RRKGISKLV-LSFPWIGNVLIKLPI----DIVKIHSSLVKLS------GNGGMAMRISEQGNVLEILEEIGRKMWRSIS-  333 (359)
Q Consensus       266 ~~~~~~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~-  333 (359)
                      .+      + .++++....+..+..    +...+..++.+..      .. .++.+++++...+..|...+|++...+. 
T Consensus       558 ~G------lv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~  630 (781)
T 3v9f_A          558 EG------LVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYTYDHSNNIPQGSFIS  630 (781)
T ss_dssp             TE------EEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEEECGGGTCCSSCEEE
T ss_pred             CC------ceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC-CceEEEECCCCceEEecccCCcccccccc
Confidence            33      4 666654433333221    1112222222211      12 4688999999999999888887766552 


Q ss_pred             -EEEE-eCCEEEEecCCCCeEEEEcCC
Q 018242          334 -EVEE-KDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       334 -~~~~-~~g~l~ig~~~~~~l~~~~~~  358 (359)
                       .+.. .+|+||+|+.  +++.+++++
T Consensus       631 ~~~~~~~~G~l~~g~~--~Gl~~f~p~  655 (781)
T 3v9f_A          631 GCVTKDHNGLIYFGSI--NGLCFFNPD  655 (781)
T ss_dssp             EEEEECTTSCEEEEET--TEEEEECSC
T ss_pred             CceEECCCCEEEEECC--CceEEEChh
Confidence             3443 4899999995  467777654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.71  E-value=1.3e-15  Score=149.21  Aligned_cols=198  Identities=15%  Similarity=0.156  Sum_probs=141.1

Q ss_pred             EEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           27 QYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      .+..+++..|.+|++++ +|+++|++..+++|+++++++... ..                    .+......|.||++|
T Consensus        33 ~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--------------------v~~~~~~~P~GlAvD   92 (619)
T 3s94_A           33 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--------------------VVVSGLLSPDGLACD   92 (619)
T ss_dssp             ---CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--------------------EECSSCSCEEEEEEE
T ss_pred             EEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--------------------EEeCCCCCcCeEEEE
Confidence            44455678899999997 567777888889999999986521 11                    112233569999999


Q ss_pred             cCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..+++||+++... .|.+++.++...+.+..    .....|++|++||.+.+||++|.+.                .+.|
T Consensus        93 ~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g~----------------~~~I  152 (619)
T 3s94_A           93 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFW----QELDQPRAIALDPSSGFMYWTDWGE----------------VPKI  152 (619)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEC----SSCSCCCCEEEETTTTEEEEEECSS----------------SCEE
T ss_pred             ecCCEEEEEeCCCCEEEEEECCCCCEEEEEe----CCCCCCceEEEecCCCeEEEeccCC----------------CCEE
Confidence            9889999998754 58899998876555442    1345799999999755599998641                3479


Q ss_pred             EEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEE
Q 018242          184 MKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       184 ~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv  261 (359)
                      ++.++++...+.+. .....|+||+++++++.|||++...++|+++++++..   .+.+.. ....|.+|+++.+ ++|+
T Consensus       153 ~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gi~~~~~-~ly~  228 (619)
T 3s94_A          153 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYW  228 (619)
T ss_dssp             EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE---EC---------CCCEEESSS-EEEE
T ss_pred             EEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCCceEEEEeCC-EEEE
Confidence            99998865444443 5678899999999888899999999999999987642   222222 2245899999876 7999


Q ss_pred             EEecCCC
Q 018242          262 GIHSRRK  268 (359)
Q Consensus       262 ~~~~~~~  268 (359)
                      +.+..+.
T Consensus       229 td~~~~~  235 (619)
T 3s94_A          229 TDWSTHS  235 (619)
T ss_dssp             ECTTTCS
T ss_pred             ecCCCCE
Confidence            9987665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.71  E-value=1.1e-14  Score=132.35  Aligned_cols=199  Identities=19%  Similarity=0.197  Sum_probs=130.5

Q ss_pred             CCCCCceEEEccCCCeeEEecC---CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           32 GAIGPESLAFDALGEGPYTGVS---DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      ....|.+++++|+|+ +|+...   ++.|+.|+.++++.+.+.                  ........|.++++++++.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~------------------~~~~~~~~p~~~a~spdg~   98 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN------------------TVVAPGTPPAYVAVDEARQ   98 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE------------------EEEEESCCCSEEEEETTTT
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee------------------eeecCCCCCEEEEECCCCC
Confidence            347899999999999 776554   478999999776544432                  1122345688999999555


Q ss_pred             eEEEEeCCC-cEEEEeCC-CCeEEEEeec-CCC------ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          109 DLYIADAYF-GLLKVGPE-GGLATAVATQ-SEG------IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       109 ~l~v~~~~~-~i~~~~~~-~~~~~~~~~~-~~~------~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      .||+++... .+..++.+ ++..+.+... ..+      .....++.++++|+|+ +|+++..                 
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~-----------------  160 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG-----------------  160 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT-----------------
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC-----------------
Confidence            688887543 47777763 4444333221 111      0123467899999999 9999654                 


Q ss_pred             CceEEEEeCC-CCcEEEE----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecCC------C
Q 018242          180 TGRLMKYDPA-TKQVTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLP------G  246 (359)
Q Consensus       180 ~g~v~~~d~~-~~~~~~~----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------~  246 (359)
                      .+.|..|+.+ ++++...    ......|.+++++|||+++|+++..++.+.+|+++..  .......+...+      .
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence            3357666665 4554432    1233468899999999999999999999999987642  111111222222      2


Q ss_pred             CCCceEECCCCC-EEEEEecCC
Q 018242          247 FPDNIKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       247 ~p~~i~~d~~G~-lwv~~~~~~  267 (359)
                      .|.+++++++|+ ||++....+
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTT
T ss_pred             cceeEEECCCCCEEEEEeCCCC
Confidence            356699999997 778776544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.70  E-value=1.3e-14  Score=146.92  Aligned_cols=274  Identities=12%  Similarity=0.166  Sum_probs=171.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ..+|+.|++|+ +|+++.+ +|+++|+.++++..+...+..             ...........|..|+ +|+||+++.
T Consensus       265 i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~i~~i~~D~-~g~lWigt~  328 (795)
T 4a2l_A          265 IRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVE-------------NGSLSQRSVRSIFMDS-QGGMWLGTY  328 (795)
T ss_dssp             EEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTS-------------TTSCSSSCEEEEEECT-TSCEEEEES
T ss_pred             EEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCC-------------CCCCCCCcEEEEEEeC-CcCEEEEEC
Confidence            45788999999 9999986 799999998877766422100             0001123456888888 999999998


Q ss_pred             CCcEEEEeCCCCeEEEEeecC--CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          116 YFGLLKVGPEGGLATAVATQS--EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .+||.++++.++.++.+....  .......+..++.|++|+ ||++.                  ..++|.+++++++.+
T Consensus       329 ~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt------------------~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          329 FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGT------------------NDGGLNLYNPITQRF  389 (795)
T ss_dssp             SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEE------------------SSSCEEEECTTTCCE
T ss_pred             CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEE------------------CCCCeEEEcCCCCcE
Confidence            889999998877766543211  122334678899999999 99993                  235799999988877


Q ss_pred             EEEeCC-------C--CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CC----CCCCceEECCCCCE
Q 018242          194 TVLLGN-------L--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP----GFPDNIKRSPRGGF  259 (359)
Q Consensus       194 ~~~~~~-------~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~----~~p~~i~~d~~G~l  259 (359)
                      ..+...       +  .....++.+++++.||+ .+.+++|++++....   ....+.. .+    .....++.|++|+|
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~~Gl~~~d~~~~---~~~~~~~~~~~l~~~~v~~i~~d~~g~l  465 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHAGGLSILHRNSG---QVENFNQRNSQLVNENVYAILPDGEGNL  465 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTTEEEE-EETTTEEEEEETTTC---CEEEECTTTSCCSCSCEEEEEECSSSCE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeCcCceeEEeCCCC---cEEEeecCCCCcCCCeeEEEEECCCCCE
Confidence            765422       1  12346666777753444 556678999996543   2333322 11    12345788999999


Q ss_pred             EEEEecCCCccccccccCCccceeeecCCc-------cceeeeeecccccCc-----ceEEEEECCCCCEEEEEE---cc
Q 018242          260 WVGIHSRRKGISKLVLSFPWIGNVLIKLPI-------DIVKIHSSLVKLSGN-----GGMAMRISEQGNVLEILE---EI  324 (359)
Q Consensus       260 wv~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~---~~  324 (359)
                      |+++. .+      +.++++....+..+..       +...+..++.+....     ..++.+++++...+ .+.   ..
T Consensus       466 wigt~-~G------l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~-~~~~~~~~  537 (795)
T 4a2l_A          466 WLGTL-SA------LVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI-QKASILPV  537 (795)
T ss_dssp             EEEES-SC------EEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE-EECCCSCS
T ss_pred             EEEec-Cc------eeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE-EEecCCCC
Confidence            99997 44      5666554333322221       111222222221111     03566777665555 443   22


Q ss_pred             CCceeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          325 GRKMWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       325 ~g~~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      .+.....+..+..+ +|+||+|+..  +|.+++..
T Consensus       538 ~~l~~~~i~~i~~d~~g~lWigT~~--Gl~~~d~~  570 (795)
T 4a2l_A          538 SNVTKLFTNCIYEASNGIIWVGTRE--GFYCFNEK  570 (795)
T ss_dssp             CGGGGSCEEEEEECTTSCEEEEESS--CEEEEETT
T ss_pred             CCCCCCeeEEEEECCCCCEEEEeCC--CceeECCC
Confidence            34444566777765 8999999973  78888753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.70  E-value=1.3e-16  Score=158.70  Aligned_cols=223  Identities=13%  Similarity=0.109  Sum_probs=153.2

Q ss_pred             eCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           30 IEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      +..+..|++|++++. ++++|++...++|+++++++.....      .          ....+......|.||++++.++
T Consensus       402 ~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~------~----------~~~~i~~~~~~P~glavD~~~g  465 (699)
T 1n7d_A          402 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS------S----------YDTVISRDIQAPDGLAVDWIHS  465 (699)
T ss_dssp             SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C------C----------CCCBCCSCC--CCCEECCCSSS
T ss_pred             eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc------c----------eEEEEeCCCCCcceEEEEeeCC
Confidence            345678999999975 5666777888899999987620000      0          0001112234688999997689


Q ss_pred             eEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          109 DLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       109 ~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      +||+++.. +.|.++++++...+.+..    .....|++|++|+++++||+++.+.                .+.|++++
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~~----------------~~~I~~~~  525 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWGT----------------PAKIKKGG  525 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEEEECC----CSSCCCCCEECCSSSSCCEECCCSS----------------SCCEEBCC
T ss_pred             cEEEEeccCCeEEEEecCCCceEEEEe----CCCCCcceEEEccCCCcEEEcccCC----------------CCeEEEEe
Confidence            99999765 469999998876555432    1245789999998655599997541                24788888


Q ss_pred             CCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCCCCCceEECCCCCEEEEE
Q 018242          188 PATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       188 ~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~lwv~~  263 (359)
                      +++...+.+ ...+..|+||+++++++.|||+++..++|+++++++.   .++.+..   ....|.+|++|.+ +||++.
T Consensus       526 ~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             SSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEEC
T ss_pred             CCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEe
Confidence            775433333 3457789999999988889999999999999998653   2233332   1245899999875 688888


Q ss_pred             ecCCCccccccccCCc-cceeeecCCccceeeeee
Q 018242          264 HSRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSS  297 (359)
Q Consensus       264 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  297 (359)
                      +..+.     |.++++ +|+.+..+..+...+..+
T Consensus       602 ~~~~~-----V~~~d~~~G~~~~~i~~~~~~P~~i  631 (699)
T 1n7d_A          602 IINEA-----IFSANRLTGSDVNLLAENLLSPEDM  631 (699)
T ss_dssp             STTTC-----EEEEETTTEEEEECCCTTCSSCCCC
T ss_pred             CCCCe-----EEEEEccCCCceEEeecCCCCCcEE
Confidence            77665     666654 788877776554444443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.69  E-value=4.9e-15  Score=148.26  Aligned_cols=195  Identities=13%  Similarity=0.145  Sum_probs=141.7

Q ss_pred             eCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcc----eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           30 IEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRR----WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        30 ~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +..+..|.+|++++ +++++|++..+++|+++++++..    ...                    .+......|.||++|
T Consensus       420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~--------------------vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--------------------VISRDIQAPDGLAVD  479 (791)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--------------------EECSSCSCCCEEEEE
T ss_pred             ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE--------------------EEecCCCCcceeeee
Confidence            34577899999998 57778888888999999987631    111                    122244678999999


Q ss_pred             cCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..+++||+++... .|.++++++...+.+...    .+..|++|++|+.+++||++|.+.                .+.|
T Consensus       480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g~----------------~~~I  539 (791)
T 3m0c_C          480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWGT----------------PAKI  539 (791)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECSS----------------SCEE
T ss_pred             ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC----CCCCcceEEEecCCCCEEEecCCC----------------CCeE
Confidence            8788999998764 599999998776655431    245689999999755599998652                2479


Q ss_pred             EEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CC--CCCCceEECCCCCE
Q 018242          184 MKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP--GFPDNIKRSPRGGF  259 (359)
Q Consensus       184 ~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~p~~i~~d~~G~l  259 (359)
                      .+++.++...+.+. ..+..|+||++++.++.|||++...++|+++++++...   ..+.. ..  ..|.+|+++ .++|
T Consensus       540 ~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P~glav~-~~~l  615 (791)
T 3m0c_C          540 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF-EDKV  615 (791)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSEEEEEEE-TTEE
T ss_pred             EEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCCCEEEEe-CCEE
Confidence            99999865554443 45678999999988888999999999999999876432   23322 11  236677775 3579


Q ss_pred             EEEEecCCC
Q 018242          260 WVGIHSRRK  268 (359)
Q Consensus       260 wv~~~~~~~  268 (359)
                      |++.+..+.
T Consensus       616 YwtD~~~~~  624 (791)
T 3m0c_C          616 FWTDIINEA  624 (791)
T ss_dssp             EEEETTTTE
T ss_pred             EEEECCCCE
Confidence            999987664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=2.5e-15  Score=133.01  Aligned_cols=185  Identities=14%  Similarity=0.256  Sum_probs=131.1

Q ss_pred             CCCCceEEE-ccCCCeeEEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           33 AIGPESLAF-DALGEGPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        33 ~~~p~~i~~-~~~G~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      +..|.++++ +++|+ +|++..  ++.|.+||+++.....+.                    ......|.++++++ +|+
T Consensus        76 ~~~p~~i~~~~~~g~-l~v~~~~~~~~i~~~d~~g~~~~~~~--------------------~~~~~~~~~i~~~~-~g~  133 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGD-IIVTERSPTHQIQIYNQYGQFVRKFG--------------------ATILQHPRGVTVDN-KGR  133 (286)
T ss_dssp             BSSEEEEEEETTTTE-EEEEECGGGCEEEEECTTSCEEEEEC--------------------TTTCSCEEEEEECT-TSC
T ss_pred             ccCceEEEEEcCCCe-EEEEcCCCCCEEEEECCCCcEEEEec--------------------CccCCCceEEEEeC-CCC
Confidence            468999999 57888 666653  689999997654333221                    11224588999999 889


Q ss_pred             EEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          110 LYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       110 l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +|+++.. +.|.++++++.....+...   .....|++|+++++|+ +|+++..                 .+.|.++++
T Consensus       134 l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~~g~-l~v~~~~-----------------~~~i~~~~~  192 (286)
T 1q7f_A          134 IIVVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVNDKQE-IFISDNR-----------------AHCVKVFNY  192 (286)
T ss_dssp             EEEEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECSSSE-EEEEEGG-----------------GTEEEEEET
T ss_pred             EEEEECCCCEEEEEcCCCCEEEEeCCC---CccCCcEEEEECCCCC-EEEEECC-----------------CCEEEEEcC
Confidence            9999864 4699999876655443211   1234689999999999 9999643                 457999998


Q ss_pred             CCCcEEEEeCC--CCCCceEEEccCCCEEEEEecCCC-EEEEEEcCCCCCcceeEeec-C-CCCCCceEECCCCCEEEEE
Q 018242          189 ATKQVTVLLGN--LSFPNGVALSEDGNYILLAETTSC-RILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       189 ~~~~~~~~~~~--~~~p~gia~~~d~~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~-~-~~~p~~i~~d~~G~lwv~~  263 (359)
                      ++..+..+...  ...|.+++++++|+ +|+++..++ +|.+|+.++.   ....+.. . ...|.+++++++|++|+++
T Consensus       193 ~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~i~~~~~g~l~vs~  268 (286)
T 1q7f_A          193 EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ---LISALESKVKHAQCFDVALMDDGSVVLAS  268 (286)
T ss_dssp             TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC---EEEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred             CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCC---EEEEEcccCCCCcceeEEECCCCcEEEEC
Confidence            75544444322  36799999999986 899998876 9999985432   1222322 1 2247789999999999996


Q ss_pred             e
Q 018242          264 H  264 (359)
Q Consensus       264 ~  264 (359)
                      .
T Consensus       269 ~  269 (286)
T 1q7f_A          269 K  269 (286)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=2.5e-14  Score=129.66  Aligned_cols=254  Identities=10%  Similarity=0.022  Sum_probs=161.7

Q ss_pred             ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCCCCeE
Q 018242           51 GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPEGGLA  129 (359)
Q Consensus        51 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~~~~  129 (359)
                      ++.++.|..+|++++++...-...              .........|.+++++  ++++|++... +.|.++|++++++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~--------------~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~   76 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYR--------------ANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKE   76 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHH--------------HHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhh--------------hcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEE
Confidence            344689999999988554210000              0001223457888886  7899999764 4599999998876


Q ss_pred             EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC------CC
Q 018242          130 TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS------FP  203 (359)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~------~p  203 (359)
                      .....     ....|.+++++++|+ +|+++..                 .+.|.++|++++++........      .|
T Consensus        77 ~~~i~-----~~~~p~~i~~~~~g~-lyv~~~~-----------------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p  133 (328)
T 3dsm_A           77 VGRIT-----GFTSPRYIHFLSDEK-AYVTQIW-----------------DYRIFIINPKTYEITGYIECPDMDMESGST  133 (328)
T ss_dssp             EEEEE-----CCSSEEEEEEEETTE-EEEEEBS-----------------CSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred             EEEcC-----CCCCCcEEEEeCCCe-EEEEECC-----------------CCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence            43222     134788999999996 9999532                 4579999999887764333333      78


Q ss_pred             ceEEEccCCCEEEEEec-CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC----------CCcccc
Q 018242          204 NGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR----------RKGISK  272 (359)
Q Consensus       204 ~gia~~~d~~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~----------~~~~~~  272 (359)
                      .++++  +++.+|+++. .+++|.++|+...+   .......+..|.++++|++|++|+++.+.          +.    
T Consensus       134 ~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~---~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~----  204 (328)
T 3dsm_A          134 EQMVQ--YGKYVYVNCWSYQNRILKIDTETDK---VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS----  204 (328)
T ss_dssp             CCEEE--ETTEEEEEECTTCCEEEEEETTTTE---EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE----
T ss_pred             ceEEE--ECCEEEEEcCCCCCEEEEEECCCCe---EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce----
Confidence            99999  4567999987 48899999976542   11122234568999999999999998764          22    


Q ss_pred             ccccCCc-cceeeecCCcc-ceeeeeecccccCcceEEEEECCCCCEEEEEEccCCce---------eeceEEEEEe--C
Q 018242          273 LVLSFPW-IGNVLIKLPID-IVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKM---------WRSISEVEEK--D  339 (359)
Q Consensus       273 ~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~---------~~~~~~~~~~--~  339 (359)
                       +.++++ ++++...+..+ ...+..+++..+..  .++..+.   .+..+....+..         ...+.++..+  +
T Consensus       205 -v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~--~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          205 -LYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD--TLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             -EEEEETTTTEEEEEEECCTTCCCEEEEECTTSC--EEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred             -EEEEECCCCeEEEEEecCCCCCceeEEEecCCC--EEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence             555554 67777666543 12444444443222  2222222   122222212211         1345666653  7


Q ss_pred             CEEEEec----CCCCeEEEEcCC
Q 018242          340 GNLWIGS----VNMPYAGLYNYS  358 (359)
Q Consensus       340 g~l~ig~----~~~~~l~~~~~~  358 (359)
                      ++||+++    ..+..|.+++.+
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT
T ss_pred             CeEEEEcccccccCCEEEEECCC
Confidence            8999999    778899998864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.68  E-value=1.5e-14  Score=141.68  Aligned_cols=197  Identities=15%  Similarity=0.117  Sum_probs=147.6

Q ss_pred             EEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+++.++..|.+|++|+ +|+++|++...+.|+++++++...+.+.                    ......|.||++|.
T Consensus       342 ~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~--------------------~~~~~~p~GlAvD~  401 (619)
T 3s94_A          342 VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV--------------------TAQIAHPDGIAVDW  401 (619)
T ss_dssp             ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------------------CSSCSCCCEEEEET
T ss_pred             EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE--------------------ECCCCCcCceEEec
Confidence            34455677899999998 5777788888899999999876443331                    22335689999997


Q ss_pred             CCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          106 TNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       106 ~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      .+++||+++... .|.+++.++...+.+..    ..+..|++|++||. |. ||++|.+.                ...|
T Consensus       402 ~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~----~~l~~P~~iavdp~~G~-ly~tD~g~----------------~~~I  460 (619)
T 3s94_A          402 VARNLYWTDTGTDRIEVTRLNGTMRKILIS----EDLEEPRAIVLDPMVGY-MYWTDWGE----------------IPKI  460 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEC----TTCCSEEEEEEETTTTE-EEEEECSS----------------SCEE
T ss_pred             ccCcEEEEeCCCCcEEEEeCCCCeEEEEEE----CCCCCeeeEEEEcCCCc-EEEecCCC----------------CCEE
Confidence            789999998754 58888988765544432    13568999999986 66 99998652                3479


Q ss_pred             EEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEE
Q 018242          184 MKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       184 ~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv  261 (359)
                      ++.+.++...+.+ ...+..|+||+++++++.|||+++..++|.++++++...   +.+. ..-..|.+|+++. ++||+
T Consensus       461 ~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glav~~-~~ly~  536 (619)
T 3s94_A          461 ERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR---RVLVEDKIPHIFGFTLLG-DYVYW  536 (619)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEEECCCCSSCCEEEET-TEEEE
T ss_pred             EEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce---EEEeccCCCCcEEEEEEC-CEEEE
Confidence            9998875444333 345788999999998888999999999999999876432   3332 2234589999975 48999


Q ss_pred             EEecCCC
Q 018242          262 GIHSRRK  268 (359)
Q Consensus       262 ~~~~~~~  268 (359)
                      +.+..+.
T Consensus       537 tD~~~~~  543 (619)
T 3s94_A          537 TDWQRRS  543 (619)
T ss_dssp             ECTTSSC
T ss_pred             eecCCCe
Confidence            9988665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=1.8e-14  Score=134.63  Aligned_cols=196  Identities=16%  Similarity=0.207  Sum_probs=136.2

Q ss_pred             CCCCceEEEccCCCeeEEecCCC--EEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           33 AIGPESLAFDALGEGPYTGVSDG--RIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~--~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      ...|. ++++++|+.+|++...+  .|+++++.++.. ..+..                 ........|+++++++++++
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~-----------------~~~~~~~~p~~iav~p~~g~  232 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ-----------------LGSTFSGKIGAVALDETEEW  232 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE-----------------CCTTSCSCCCBCEECTTSSE
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee-----------------ccchhcCCcEEEEEeCCCCe
Confidence            46788 99999998788776644  899999876532 12110                 00113356889999998899


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeec-CCCccccccc-eEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQ-SEGIPFRFCN-SLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~-~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      ||+++..+.|++++++++..+.+... ..+.....|. ++++++++.+||+++..                 .+.|++++
T Consensus       233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-----------------~~~I~~~~  295 (409)
T 3hrp_A          233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-----------------LSSVYKIT  295 (409)
T ss_dssp             EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-----------------TTEEEEEC
T ss_pred             EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-----------------CCEEEEEe
Confidence            99987655699999998875544221 1111112344 99999954449999764                 35799999


Q ss_pred             CCCCcEEEEeCC---------------CCCCceEEEccCCCEEEEEec-CCCEEEEEEcCCCCCcceeEeecC-------
Q 018242          188 PATKQVTVLLGN---------------LSFPNGVALSEDGNYILLAET-TSCRILRYWLKTSKAGTIEIVAQL-------  244 (359)
Q Consensus       188 ~~~~~~~~~~~~---------------~~~p~gia~~~d~~~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~-------  244 (359)
                      +++ ....+...               +..|++++++++|+ +|+++. .+++|.+|++....   ...+...       
T Consensus       296 ~~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~  370 (409)
T 3hrp_A          296 PDG-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQI  370 (409)
T ss_dssp             TTC-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCC
T ss_pred             cCC-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcC
Confidence            875 44444321               45699999999998 999999 99999999954332   2222211       


Q ss_pred             --------CCCCCceEECCCCCEEEEEecCCC
Q 018242          245 --------PGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       245 --------~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                              -..|.++++|++|+|||+...++.
T Consensus       371 ~g~~~~~~~~~P~giavd~~g~lyVad~~n~~  402 (409)
T 3hrp_A          371 DGTPLEATFNYPYDICYDGEGGYWIAEAWGKA  402 (409)
T ss_dssp             CBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred             CCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence                    124889999999999999987653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.67  E-value=7.9e-14  Score=129.75  Aligned_cols=223  Identities=13%  Similarity=0.080  Sum_probs=147.8

Q ss_pred             eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCCC
Q 018242           48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPEG  126 (359)
Q Consensus        48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~~  126 (359)
                      ++++.. ..|.++++++.....+                     ......|.+|++++.++.||+++... .|+++++++
T Consensus        86 ll~~~~-~~I~~i~l~~~~~~~~---------------------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g  143 (400)
T 3p5b_L           86 LFFTNR-HEVRKMTLDRSEYTSL---------------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR  143 (400)
T ss_dssp             EEEEET-TEEEEECTTSCSCEEE---------------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             eEEecc-ceeEEEccCCcceeEe---------------------ccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence            333333 6899999887644432                     22345688999998889999998754 599999876


Q ss_pred             C----eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCC
Q 018242          127 G----LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLS  201 (359)
Q Consensus       127 ~----~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~  201 (359)
                      .    ..+.+..    .....|.+|++|+.++.||++|..                 .+.|.++++++...+.+. ..+.
T Consensus       144 ~~~~~~~~~~~~----~~~~~p~glavD~~~~~lY~~d~~-----------------~~~I~~~~~~g~~~~~l~~~~~~  202 (400)
T 3p5b_L          144 AHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGS  202 (400)
T ss_dssp             ----CCCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEECTTTCSEEEEEECSSC
T ss_pred             CCCCCcceEEEe----CCCCCcccEEEEecCCceEEEECC-----------------CCeEEEEeCCCCceEEEEeCCCC
Confidence            3    2222222    134578999999844449999765                 347999999876555443 4677


Q ss_pred             CCceEEEccCCCEEEEEecC-CCEEEEEEcCCCCCcceeEeec-CCCCCCceEECC-CCCEEEEEecCCCccccccccCC
Q 018242          202 FPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP-RGGFWVGIHSRRKGISKLVLSFP  278 (359)
Q Consensus       202 ~p~gia~~~d~~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~  278 (359)
                      .|++|+++|.++.|||++.. .++|+++++++..   ...+.. .-..|.+|++|+ .++||++....+           
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~-----------  268 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH-----------  268 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTTT-----------
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEECCCC-----------
Confidence            89999999988889999976 4789999987642   222322 224699999996 567999986533           


Q ss_pred             ccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCCCeEEEEc
Q 018242          279 WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYN  356 (359)
Q Consensus       279 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~  356 (359)
                                                  .+.+++.+|...+.+....+ ....+.++...+++||+..+.+.+|.+++
T Consensus       269 ----------------------------~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          269 ----------------------------SISSIDVNGGNRKTILEDEK-RLAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             ----------------------------EEEEEETTSCCCEEEEECSS-TTSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             ----------------------------EEEEEeCCCCccEEEEeCCC-CCCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence                                        34445555543333322111 12344455557778888888778777776

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.66  E-value=2.1e-13  Score=122.85  Aligned_cols=196  Identities=12%  Similarity=0.022  Sum_probs=129.4

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceE-EEE
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG-LCF  103 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-i~~  103 (359)
                      ++..+ ...| +++++++|+.+|++.. ++.|+.||+.+++. ...                    . .....|.. +++
T Consensus        35 ~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------~-~~~~~~~~~~~~   91 (331)
T 3u4y_A           35 QITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA--------------------I-QEGQSSMADVDI   91 (331)
T ss_dssp             EEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE--------------------E-EECSSCCCCEEE
T ss_pred             eEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe--------------------c-ccCCCCccceEE
Confidence            44433 4566 9999999996776655 78999999988753 211                    1 12234666 999


Q ss_pred             ecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          104 NKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       104 ~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ++++..++++...+   .|..+|.++++.......     ...+++++++|+|+++|+++...               ..
T Consensus        92 s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~---------------~~  151 (331)
T 3u4y_A           92 TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGNGLILIDRSS---------------AN  151 (331)
T ss_dssp             CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEETT---------------TT
T ss_pred             CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECCCCCEEEEEecCC---------------Cc
Confidence            99555566433332   699999998876543321     23568999999998799985431               11


Q ss_pred             -ceEEEEeCCCCcEE----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-eeEeecCCCCCCceEEC
Q 018242          181 -GRLMKYDPATKQVT----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGFPDNIKRS  254 (359)
Q Consensus       181 -g~v~~~d~~~~~~~----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d  254 (359)
                       -.+|.++.+ +.+.    ........|.+++++||++.+|++...++.|.+|++...+... ...+ .....|.+++++
T Consensus       152 ~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~s  229 (331)
T 3u4y_A          152 TVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVS  229 (331)
T ss_dssp             EEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEEC
T ss_pred             eEEEEEECCC-CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEEC
Confidence             234455433 2221    1223345689999999999999999989999999986543311 1122 234568899999


Q ss_pred             CCCC-EEEEEecCC
Q 018242          255 PRGG-FWVGIHSRR  267 (359)
Q Consensus       255 ~~G~-lwv~~~~~~  267 (359)
                      ++|+ +|++....+
T Consensus       230 pdg~~l~v~~~~~~  243 (331)
T 3u4y_A          230 RDGSTVYVLTESTV  243 (331)
T ss_dssp             TTSSEEEEECSSEE
T ss_pred             CCCCEEEEEEcCCC
Confidence            9998 777765433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.66  E-value=7.8e-14  Score=125.68  Aligned_cols=196  Identities=14%  Similarity=0.085  Sum_probs=132.3

Q ss_pred             CcceEEEEecCCCeEEEEeCCC-cEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242           96 GRPLGLCFNKTNGDLYIADAYF-GLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      ..+.++.+++.++.||+++... .|.+++++++.. +.+..    .....|.++++|+.++.||++|..           
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~----~~l~~p~glavd~~~g~ly~~d~~-----------   99 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV----SGLLSPDGLACDWLGEKLYWTDSE-----------   99 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE----ECCSCCCEEEEETTTTEEEEEETT-----------
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc----CCCCCccEEEEEcCCCeEEEEECC-----------
Confidence            3467899998789999998754 599999987632 11211    123478899999754449999765           


Q ss_pred             eeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecC-CCEEEEEEcCCCCCcceeEeec-CCCCCCc
Q 018242          174 ILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ-LPGFPDN  250 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~  250 (359)
                            .+.|.++++++...+.+. .....|++|+++|.++.+||++.. .++|+++++++..   .+.+.. .-..|++
T Consensus       100 ------~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~Png  170 (318)
T 3sov_A          100 ------TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYWPNG  170 (318)
T ss_dssp             ------TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEE
T ss_pred             ------CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCCccE
Confidence                  347999998865444443 567789999999987789999965 6899999987542   223322 2245999


Q ss_pred             eEECC-CCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCcee
Q 018242          251 IKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMW  329 (359)
Q Consensus       251 i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~  329 (359)
                      |++|+ +++||++....+                                       .+.+++.+|...+.+... .  .
T Consensus       171 lavd~~~~~lY~aD~~~~---------------------------------------~I~~~d~dG~~~~~~~~~-~--~  208 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLN---------------------------------------FIHKSNLDGTNRQAVVKG-S--L  208 (318)
T ss_dssp             EEEETTTTEEEEEETTTT---------------------------------------EEEEEETTSCSCEEEECS-C--C
T ss_pred             EEEeccCCEEEEEECCCC---------------------------------------EEEEEcCCCCceEEEecC-C--C
Confidence            99997 567999987543                                       344444444333332221 1  2


Q ss_pred             eceEEEEEeCCEEEEecCCCCeEEEEcC
Q 018242          330 RSISEVEEKDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       330 ~~~~~~~~~~g~l~ig~~~~~~l~~~~~  357 (359)
                      ..+.++..+++.||++.+.+..|.+++.
T Consensus       209 ~~P~glav~~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          209 PHPFALTLFEDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             SCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence            3444555566777777777777777665

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.66  E-value=1.4e-13  Score=124.78  Aligned_cols=190  Identities=14%  Similarity=0.169  Sum_probs=137.9

Q ss_pred             CceEEEccCCCeeEEec--CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           36 PESLAFDALGEGPYTGV--SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      |++++++++|+.+|++.  .++.|+.||+.+.+....                    +......|.+++++++++.+|++
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~--------------------~~~~~~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA--------------------IQNTGKMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE--------------------ECCCCTTCCCCEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE--------------------ecCCCCccceEEECCCCCEEEEE
Confidence            78999999999888776  367899999987743321                    11122347889999966778888


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      +..+.|..+|..+++...........+...+.+++++++|+++|+++..                 .+.|+.+|+++++.
T Consensus       203 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          203 NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----------------AAEVLVVDTRNGNI  265 (353)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----------------SSEEEEEETTTCCE
T ss_pred             cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----------------CCEEEEEECCCCcE
Confidence            7766799999998876543332111123467789999999989998532                 45799999987776


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecC
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~  266 (359)
                      ..... ...+.++++++|++.+|+++..++.|.+||....+   .......+..|.+++++++|+ +|++....
T Consensus       266 ~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          266 LAKVA-APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK---VVKTFDTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEE-CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEEECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEE-cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCe---EEEEEecCCCCCeEEEcCCCCEEEEEEccc
Confidence            54332 23467899999999999999889999999975432   111223445688999999997 88887653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.65  E-value=2.2e-14  Score=140.63  Aligned_cols=204  Identities=13%  Similarity=0.078  Sum_probs=145.5

Q ss_pred             EEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+++.++..+.+|++|+ +++++|++...++|+++++++....++-... .             ........|.||++|.
T Consensus       333 ~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~-~-------------~~~~~~~~p~glAvD~  398 (628)
T 4a0p_A          333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS-V-------------PSQNLEIQPYDLSIDI  398 (628)
T ss_dssp             ECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------------CCCEEEEEEET
T ss_pred             EEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcc-c-------------ccccccCCcceEEeec
Confidence            34455667788999998 4777888999999999998875333221000 0             0001335689999999


Q ss_pred             CCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          106 TNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       106 ~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..++||+++... .|.+++.++...+.+...    ....|++|++|| +|. ||++|.+.               ..++|
T Consensus       399 ~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~-ly~tD~g~---------------~~~~I  458 (628)
T 4a0p_A          399 YSRYIYWTCEATNVINVTRLDGRSVGVVLKG----EQDRPRAVVVNPEKGY-MYFTNLQE---------------RSPKI  458 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCEEEEEEEC----TTCCEEEEEEETTTTE-EEEEEEET---------------TEEEE
T ss_pred             cCCeEEEEcCCCCEEEEEECCCCeEEEEEeC----CCCceeeEEEecCCCe-EEEeecCC---------------CCCeE
Confidence            789999998754 588888876654444331    345799999999 566 99997642               11379


Q ss_pred             EEEeCCCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEE
Q 018242          184 MKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       184 ~~~d~~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv  261 (359)
                      ++.++++...+.+ ...+..|+||+++++++.|||+++..+.|.++++++..   ++.+.. ....|.+|+++. |+||+
T Consensus       459 ~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~---r~~~~~~~~~~P~glav~~-~~ly~  534 (628)
T 4a0p_A          459 ERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVLEDSNILQPVGLTVFE-NWLYW  534 (628)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSCEEEEEEET-TEEEE
T ss_pred             EEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc---eEEEEcCCCCCcEEEEEEC-CEEEE
Confidence            9999986544444 34678899999999888899999999999999987643   344442 234589999986 78999


Q ss_pred             EEecCCC
Q 018242          262 GIHSRRK  268 (359)
Q Consensus       262 ~~~~~~~  268 (359)
                      +.+....
T Consensus       535 tD~~~~~  541 (628)
T 4a0p_A          535 IDKQQQM  541 (628)
T ss_dssp             EETTTTE
T ss_pred             EECCCCe
Confidence            9987664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.65  E-value=7.5e-14  Score=139.73  Aligned_cols=198  Identities=14%  Similarity=0.089  Sum_probs=134.7

Q ss_pred             CCcceEEEEecCCCeEEEEeCCC-cEEEEeCCCCe----EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccc
Q 018242           95 CGRPLGLCFNKTNGDLYIADAYF-GLLKVGPEGGL----ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN  169 (359)
Q Consensus        95 ~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~  169 (359)
                      ...|.+|+++..++.||+++... .|+++++++..    .+.+..    .....|.+|++|..++.||++|..       
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~----~~l~~P~GLAvD~~~~~LY~tD~~-------  491 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDIQAPDGLAVDWIHSNIYWTDSV-------  491 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSCSCCCEEEEETTTTEEEEEETT-------
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe----cCCCCcceeeeeecCCcEEEEecC-------
Confidence            45688999998889999998764 58999987632    222222    134578999999887669999865       


Q ss_pred             ceeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEeec-CCC
Q 018242          170 HISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQ-LPG  246 (359)
Q Consensus       170 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~~  246 (359)
                                .+.|.++++++...+.+. ..+..|++|++++.++.|||++... ++|+++++++..   +..+.. .-.
T Consensus       492 ----------~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~  558 (791)
T 3m0c_C          492 ----------LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQ  558 (791)
T ss_dssp             ----------TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCS
T ss_pred             ----------CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc---eEEEEeCCCC
Confidence                      347999999866555443 5677899999999888899999876 899999987542   233333 224


Q ss_pred             CCCceEECC-CCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccC
Q 018242          247 FPDNIKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG  325 (359)
Q Consensus       247 ~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  325 (359)
                      .|.+|++|+ .|+||++.....                                       .+.+++.+|.....+....
T Consensus       559 ~P~GLavD~~~~~LYwaD~~~~---------------------------------------~I~~~d~dG~~~~~v~~~~  599 (791)
T 3m0c_C          559 WPNGITLDLLSGRLYWVDSKLH---------------------------------------SISSIDVNGGNRKTILEDE  599 (791)
T ss_dssp             CEEEEEEETTTTEEEEEETTTT---------------------------------------EEEEEETTSCSCEEEEECT
T ss_pred             CceEEEEecCCCeEEEEeCCCC---------------------------------------cEEEEecCCCceEEEecCC
Confidence            599999995 678999986533                                       3444555544333332211


Q ss_pred             CceeeceEEEEEeCCEEEEecCCCCeEEEEc
Q 018242          326 RKMWRSISEVEEKDGNLWIGSVNMPYAGLYN  356 (359)
Q Consensus       326 g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~  356 (359)
                      + .+..+.++...+++||++.+.++.|.+++
T Consensus       600 ~-~l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          600 K-RLAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             T-TTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             C-ccCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence            1 12344455556778888888778777765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.63  E-value=1e-14  Score=131.67  Aligned_cols=189  Identities=11%  Similarity=0.164  Sum_probs=130.1

Q ss_pred             CCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..|.+|++++ +|+ +|++...++|+++|+++++++.+...                ........|.++++++++|++|+
T Consensus        80 ~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~----------------~~~~~~~~p~~i~~d~~~G~l~v  142 (322)
T 2fp8_A           80 GRTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATS----------------VDGVPFKWLYAVTVDQRTGIVYF  142 (322)
T ss_dssp             CCEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESE----------------ETTEECSCEEEEEECTTTCCEEE
T ss_pred             CCCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEeccc----------------CCCCcccccceEEEecCCCEEEE
Confidence            3689999997 787 88876667899999987655554311                00011245889999985689999


Q ss_pred             EeCC------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          113 ADAY------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       113 ~~~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ++..                  ++|+++++++++++.+..     ....|++|+++++|++||+++..            
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p~gia~~~dg~~lyv~d~~------------  205 (322)
T 2fp8_A          143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----ELHVPGGAEVSADSSFVLVAEFL------------  205 (322)
T ss_dssp             EESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----EESCCCEEEECTTSSEEEEEEGG------------
T ss_pred             ECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----CCccCcceEECCCCCEEEEEeCC------------
Confidence            9754                  359999998887765433     23578999999999889999653            


Q ss_pred             eecCCCceEEEEeCCC---CcEEEEeCCCCCCceEEEccCCCEEEEEecC----------CCEEEEEEcCCCCCcceeEe
Q 018242          175 LSGDKTGRLMKYDPAT---KQVTVLLGNLSFPNGVALSEDGNYILLAETT----------SCRILRYWLKTSKAGTIEIV  241 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~---~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~----------~~~i~~~~~~~~~~~~~~~~  241 (359)
                           .+.|++++.++   +..+.+.. ...|.+++++++|+ +|++...          .++|.+++.++.   ....+
T Consensus       206 -----~~~I~~~~~~~~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~---~~~~~  275 (322)
T 2fp8_A          206 -----SHQIVKYWLEGPKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGN---ILEVI  275 (322)
T ss_dssp             -----GTEEEEEESSSTTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSC---EEEEE
T ss_pred             -----CCeEEEEECCCCcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCC---EEEEE
Confidence                 34799998874   23333322 22399999999997 8998865          467899975432   12223


Q ss_pred             ecCC----CCCCceEECCCCCEEEEEecCC
Q 018242          242 AQLP----GFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       242 ~~~~----~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ....    ..|.+++. .+|+||+++...+
T Consensus       276 ~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~  304 (322)
T 2fp8_A          276 PLPPPFAGEHFEQIQE-HDGLLYIGTLFHG  304 (322)
T ss_dssp             ECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred             ECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence            2221    23556666 4789999986544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.62  E-value=1.2e-13  Score=125.88  Aligned_cols=199  Identities=13%  Similarity=0.161  Sum_probs=135.0

Q ss_pred             CCCCCceEEEccCCCeeEEecC-----CCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           32 GAIGPESLAFDALGEGPYTGVS-----DGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~-----~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+..|.++++|++|++|+++..     .++|++||+++++. ..+..+.               ........+.++++++
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~---------------~~~~~~~~~~~v~vd~  129 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP---------------PITLSNSFVNDLAVDL  129 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT---------------TTSCTTCCCCEEEEET
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh---------------hhcccccccceEEEec
Confidence            4679999999999995556655     47999999988763 3332110               0011123468999998


Q ss_pred             CCCeEEEEeC----CCcEEEEeCCCCeEEEEeec---C---------CCcc-------------ccccceEEEeCCCCEE
Q 018242          106 TNGDLYIADA----YFGLLKVGPEGGLATAVATQ---S---------EGIP-------------FRFCNSLDIDQSTGII  156 (359)
Q Consensus       106 ~~g~l~v~~~----~~~i~~~~~~~~~~~~~~~~---~---------~~~~-------------~~~~~~l~~d~~g~~l  156 (359)
                      +++.+|+++.    ..+|+++++++++...+...   .         .+..             ...+++|+++++|++|
T Consensus       130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          130 IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL  209 (343)
T ss_dssp             TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred             CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence            6789999986    34699999987776544321   0         0000             1247899999999889


Q ss_pred             EEEeCCCccccccceeeeeecCCCceEEEEeCCC---C---------cEEEEeCCCCCCceEEEccCCCEEEEEecCCCE
Q 018242          157 YFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT---K---------QVTVLLGNLSFPNGVALSEDGNYILLAETTSCR  224 (359)
Q Consensus       157 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~---~---------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~  224 (359)
                      |+++..                 ...+++++...   +         .+... .....|.|++++++|+ +|+++..+++
T Consensus       210 y~~~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~  270 (343)
T 2qe8_A          210 YLSPMH-----------------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSA  270 (343)
T ss_dssp             EEEESS-----------------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTE
T ss_pred             EEEeCC-----------------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCe
Confidence            999653                 23688887421   1         01111 1223689999999986 9999999999


Q ss_pred             EEEEEcCCCCCcceeEeecC--CCCCCceEECCCCCEEEEEecCC
Q 018242          225 ILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       225 i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      |.+|+....   ....+...  ...|.+++++++|+||+++...+
T Consensus       271 V~~~d~~~G---~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          271 IGVITSADR---AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             EEEEETTTT---EEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             EEEEECCCC---CEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            999997222   23333332  24589999999999999887643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.61  E-value=2.8e-12  Score=118.21  Aligned_cols=204  Identities=14%  Similarity=0.162  Sum_probs=142.8

Q ss_pred             CCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..|.+++++++|+.+|+ +..++.|..||..+++....                    + .....+.++++++++..|++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~--------------------~-~~~~~v~~~~~spdg~~l~~   90 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--------------------V-PAGSSPQGVAVSPDGKQVYV   90 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------------------E-ECSSSEEEEEECTTSSEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--------------------E-ECCCCccceEECCCCCEEEE
Confidence            46899999999986654 55789999999987754322                    1 11236789999996666888


Q ss_pred             EeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +... +.|..+|..+++.......     ...+..++++++|+++|++..                 ..+.|+.+|..++
T Consensus        91 ~~~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~  148 (391)
T 1l0q_A           91 TNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTK  148 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTT
T ss_pred             EECCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCC
Confidence            8654 5699999998876543331     135678999999997878743                 2468999999887


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe--cCCC
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH--SRRK  268 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~--~~~~  268 (359)
                      +..........+..++++++++.+|++...++.|..||+....   ..........+.+++++++|+ +|++..  ..+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~  225 (391)
T 1l0q_A          149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT  225 (391)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred             cEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---EEEEEecCCCccceEECCCCCEEEEEecCcCCCc
Confidence            7665544456679999999999999999889999999976532   111222334567899999996 666664  2232


Q ss_pred             ccccccccCC-ccceeeecCC
Q 018242          269 GISKLVLSFP-WIGNVLIKLP  288 (359)
Q Consensus       269 ~~~~~~~~~~-~~g~~~~~~~  288 (359)
                           +..++ ..++.+..++
T Consensus       226 -----v~~~d~~~~~~~~~~~  241 (391)
T 1l0q_A          226 -----VSMIDTGTNKITARIP  241 (391)
T ss_dssp             -----EEEEETTTTEEEEEEE
T ss_pred             -----EEEEECCCCeEEEEEe
Confidence                 44444 3455555443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.61  E-value=1.6e-12  Score=117.07  Aligned_cols=197  Identities=12%  Similarity=0.171  Sum_probs=127.7

Q ss_pred             CCCCceEEEccCCCeeEEecCC-CEEEEEEcC--CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           33 AIGPESLAFDALGEGPYTGVSD-GRIIKWHQD--QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      ...|.+++++++|+.+|++..+ +.|..|+.+  +++.+...                  .+.. ...|.++++++++..
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~-~~~~~~~~~s~dg~~   97 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA------------------ESAL-PGSLTHISTDHQGQF   97 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------------------EEEC-SSCCSEEEECTTSSE
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc------------------cccc-CCCCcEEEEcCCCCE
Confidence            3589999999999978877765 899998876  55444332                  1111 236789999995556


Q ss_pred             EEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          110 LYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       110 l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +|++.... .|..++.+.+..........  ....++.++++|+|+++|+++..                 .+.|..|+.
T Consensus        98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~-----------------~~~v~~~d~  158 (343)
T 1ri6_A           98 VFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALK-----------------QDRICLFTV  158 (343)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEE
T ss_pred             EEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCC-----------------CCEEEEEEe
Confidence            88887644 47788774332221111111  12357889999999988888422                 356888887


Q ss_pred             CC-CcEEEE------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcceeEeecCCC------CCCceEE
Q 018242          189 AT-KQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGTIEIVAQLPG------FPDNIKR  253 (359)
Q Consensus       189 ~~-~~~~~~------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~------~p~~i~~  253 (359)
                      .+ +++...      ......|.+++++|+++.+|++...++.|..|+++..  ...........+.      .+.++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence            65 554321      1233568899999999999999988899999998542  1211222222211      2335999


Q ss_pred             CCCCC-EEEEEecCC
Q 018242          254 SPRGG-FWVGIHSRR  267 (359)
Q Consensus       254 d~~G~-lwv~~~~~~  267 (359)
                      +++|+ ||++....+
T Consensus       239 s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          239 TPDGRHLYACDRTAS  253 (343)
T ss_dssp             CTTSSEEEEEETTTT
T ss_pred             CCCCCEEEEEecCCC
Confidence            99996 666664444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=3.9e-13  Score=119.52  Aligned_cols=184  Identities=13%  Similarity=0.182  Sum_probs=125.7

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...|.+++++++|+ +|++. .+++|.+||+.+++++.+...                ........|..+++++ +|++|
T Consensus        68 ~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~~~~~~----------------~~~~~~~~~~~i~~d~-~G~l~  129 (296)
T 3e5z_A           68 SHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWESIADS----------------FEGKKLNSPNDVCLAP-DGSLW  129 (296)
T ss_dssp             CSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEEEEECE----------------ETTEECCCCCCEEECT-TSCEE
T ss_pred             CCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEEEEeec----------------cCCCCCCCCCCEEECC-CCCEE
Confidence            46789999999999 56555 458999999977766654311                0011224577899999 89999


Q ss_pred             EEeC------------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          112 IADA------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       112 v~~~------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      +++.                  ..+|++++++ ++++.+..     ....|++++++++|+ +++++..           
T Consensus       130 vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~gi~~s~dg~-~lv~~~~-----------  191 (296)
T 3e5z_A          130 FSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-----DRVKPNGLAFLPSGN-LLVSDTG-----------  191 (296)
T ss_dssp             EEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-----CCSSEEEEEECTTSC-EEEEETT-----------
T ss_pred             EECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-----CCCCCccEEECCCCC-EEEEeCC-----------
Confidence            9753                  2369999988 55554432     234688999999999 5577543           


Q ss_pred             eeecCCCceEEEEeCC-CCcE---E-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCC
Q 018242          174 ILSGDKTGRLMKYDPA-TKQV---T-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP  248 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~-~~~~---~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  248 (359)
                            .+.|++++.+ ++++   . .+......|.+++++++|+ +|++.  .++|.+|+.++.   ....+....+ |
T Consensus       192 ------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~---~~~~~~~~~~-~  258 (296)
T 3e5z_A          192 ------DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGD---ELGRVLTPQT-T  258 (296)
T ss_dssp             ------TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSC---EEEEEECSSC-C
T ss_pred             ------CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCC---EEEEEECCCC-c
Confidence                  3578888865 4554   2 2222345689999999997 78887  689999986532   1222222233 8


Q ss_pred             CceEE-CCCCC-EEEEEec
Q 018242          249 DNIKR-SPRGG-FWVGIHS  265 (359)
Q Consensus       249 ~~i~~-d~~G~-lwv~~~~  265 (359)
                      .++++ .++|+ ||+++..
T Consensus       259 ~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          259 SNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             CEEEEESTTSCEEEEEETT
T ss_pred             eeEEEECCCCCEEEEEcCC
Confidence            88998 46764 9998853

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.60  E-value=2.5e-13  Score=120.53  Aligned_cols=203  Identities=11%  Similarity=0.093  Sum_probs=130.3

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc---ccCCcceEE
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE---HICGRPLGL  101 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~gi  101 (359)
                      ..++.+ .-.||++.+|++..++|++. ..++|.++++.++....+..+                ...   .....+.||
T Consensus         6 i~~~~~-~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~----------------~~s~~g~~~~~~sGl   68 (334)
T 2p9w_A            6 IDVKVK-NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID----------------GASSNGDGEQQMSGL   68 (334)
T ss_dssp             EEECCT-TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT----------------TTCCSSCCSEEEEEE
T ss_pred             EEecCc-ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC----------------CccccCCCcceeeEE
Confidence            344544 47899999998554577665 679999999986644433110                000   011235799


Q ss_pred             EE---ecCCCeEEEE-eC-------------CCcEEEEeCC---CCeEEEEeecC--C-------CccccccceEEEeCC
Q 018242          102 CF---NKTNGDLYIA-DA-------------YFGLLKVGPE---GGLATAVATQS--E-------GIPFRFCNSLDIDQS  152 (359)
Q Consensus       102 ~~---~~~~g~l~v~-~~-------------~~~i~~~~~~---~~~~~~~~~~~--~-------~~~~~~~~~l~~d~~  152 (359)
                      .+   |+ +++||++ +.             ...|.++|++   +++........  .       +.....++++++|++
T Consensus        69 ~~~~~D~-~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~  147 (334)
T 2p9w_A           69 SLLTHDN-SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD  147 (334)
T ss_dssp             EESSSSS-CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT
T ss_pred             EEeccCC-CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC
Confidence            99   68 6999995 41             2359999998   56543333210  0       112246899999999


Q ss_pred             CCEEEEEeCCCccccccceeeeeecCCC-ceEEEEeCCCCcEEEEe------CCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242          153 TGIIYFTDSSSQFQRRNHISVILSGDKT-GRLMKYDPATKQVTVLL------GNLSFPNGVALSEDGNYILLAETTSCRI  225 (359)
Q Consensus       153 g~~l~v~d~~~~~~~~~~~~~~~~~~~~-g~v~~~d~~~~~~~~~~------~~~~~p~gia~~~d~~~l~v~~~~~~~i  225 (359)
                      |+ +||+++.                 . +.|+++++++.......      .....++||++.||++.|++.++ .++|
T Consensus       148 Gn-aYVt~s~-----------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L  208 (334)
T 2p9w_A          148 GN-SYVAFAL-----------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRAL  208 (334)
T ss_dssp             SC-EEEEEEE-----------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSE
T ss_pred             CC-EEEeCCC-----------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeE
Confidence            99 9998643                 3 57999999865444322      11235789999999999999998 8999


Q ss_pred             EEEEcCCCCCcceeEe--e--cCCCCCCce-EECCCCCE-EEEEec
Q 018242          226 LRYWLKTSKAGTIEIV--A--QLPGFPDNI-KRSPRGGF-WVGIHS  265 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~--~--~~~~~p~~i-~~d~~G~l-wv~~~~  265 (359)
                      ++||+..........-  .  .....|++| ....+|++ +|+...
T Consensus       209 ~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          209 TAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             EEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET
T ss_pred             EEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC
Confidence            9999873211011110  0  011236775 55668876 666654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.60  E-value=1.3e-12  Score=119.42  Aligned_cols=199  Identities=12%  Similarity=0.136  Sum_probs=123.5

Q ss_pred             CCCCCceEEEccCCCeeEEecCC----CEEEEEE--cCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           32 GAIGPESLAFDALGEGPYTGVSD----GRIIKWH--QDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~----~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ....|..++++|+|+.+|++..+    +.|..|+  .++++.+.+.                  ........|.++++  
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~------------------~~~~~~~~p~~~~~--  107 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN------------------TQKTMGADPCYLTT--  107 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE------------------EEECSSSCEEEEEE--
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee------------------EeccCCCCcEEEEE--
Confidence            45789999999999988887764    6776555  4445444432                  11222345778888  


Q ss_pred             CCCeEEEEeCCC-cEEEEeCCC-CeEEEEe---e-cCC-----CccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          106 TNGDLYIADAYF-GLLKVGPEG-GLATAVA---T-QSE-----GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       106 ~~g~l~v~~~~~-~i~~~~~~~-~~~~~~~---~-~~~-----~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      +++.||+++... .+..++.+. +.+..+.   . ...     ......++.++++|+|+++|+++.+..          
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------  177 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD----------  177 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT----------
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC----------
Confidence            377899987654 477777653 2221110   1 000     011234578999999998999865311          


Q ss_pred             eecCCCceEEEEeCCCC----c-E-------EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee
Q 018242          175 LSGDKTGRLMKYDPATK----Q-V-------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA  242 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~----~-~-------~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  242 (359)
                           .-.++.++..++    + +       .........|.+++|+|||+.+|+++..++.|.+|+++.........+.
T Consensus       178 -----~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~  252 (361)
T 3scy_A          178 -----QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA  252 (361)
T ss_dssp             -----EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred             -----EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence                 113444455443    2 2       1122345668899999999999999988899999998743222222222


Q ss_pred             cCC---CCCCceEECCCCC-EEEEEec
Q 018242          243 QLP---GFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       243 ~~~---~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      ..+   ..|.+++++++|+ ||++...
T Consensus       253 ~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          253 ADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             SCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             cCCCCCCCcccEEECCCCCEEEEECCC
Confidence            211   2355899999997 6676655

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=7.2e-13  Score=121.63  Aligned_cols=198  Identities=14%  Similarity=0.128  Sum_probs=122.8

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      +....|..++++|+|+++|++..+ .|..|+.+ +++.....                  .. ...+.|.++++++ +|+
T Consensus        37 ~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~------------------~~-~~~g~~~~~~~sp-dg~   95 (365)
T 1jof_A           37 PQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA------------------SH-PIGGHPRANDADT-NTR   95 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE------------------EE-ECCSSGGGGCTTS-CCE
T ss_pred             CCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee------------------Ee-ecCCCCccEEECC-CCC
Confidence            345689999999999988887776 89999875 55443221                  10 0112366678888 565


Q ss_pred             -EEE--Ee-------------CCCcEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242          110 -LYI--AD-------------AYFGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS  172 (359)
Q Consensus       110 -l~v--~~-------------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~  172 (359)
                       +|+  ++             ..+.+..++.+ .++...............+++++++|+|+++|+++.+          
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~----------  165 (365)
T 1jof_A           96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT----------  165 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT----------
T ss_pred             EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC----------
Confidence             343  32             23335566654 2443221111100122468899999999988888653          


Q ss_pred             eeeecCCCceEEEEeCC-CCcEEEE---e-C-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC--CCcc-eeEeec
Q 018242          173 VILSGDKTGRLMKYDPA-TKQVTVL---L-G-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KAGT-IEIVAQ  243 (359)
Q Consensus       173 ~~~~~~~~g~v~~~d~~-~~~~~~~---~-~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~--~~~~-~~~~~~  243 (359)
                             ...|+.|+.+ ++++..+   . . ....|.+++|+|||+++|+++..++.|.+|+++..  +... .+.+..
T Consensus       166 -------~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  238 (365)
T 1jof_A          166 -------ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             -------TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             -------CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence                   2367777776 5665432   1 1 24568999999999999999888889999887532  1110 112222


Q ss_pred             CC----C---------CCCceE-ECCCCC-EEEEEecC
Q 018242          244 LP----G---------FPDNIK-RSPRGG-FWVGIHSR  266 (359)
Q Consensus       244 ~~----~---------~p~~i~-~d~~G~-lwv~~~~~  266 (359)
                      ++    +         .|.+++ ++++|+ ||++..+.
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            22    1         366789 999997 77776543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.58  E-value=1.2e-13  Score=123.24  Aligned_cols=188  Identities=15%  Similarity=0.161  Sum_probs=130.6

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..|.+++++++|+ +|++. ..+|+++|+++++++.+....                .......+..+++++ +|++|++
T Consensus        54 ~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~----------------~~~~~~~~~di~~d~-dG~l~~~  114 (297)
T 3g4e_A           54 APVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVD----------------NDKKNNRFNDGKVDP-AGRYFAG  114 (297)
T ss_dssp             SCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECC----------------TTCSSEEEEEEEECT-TSCEEEE
T ss_pred             CceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecC----------------CCCCCCCCCCEEECC-CCCEEEe
Confidence            4788999999999 88877 468999999988776654211                001224578899999 8899998


Q ss_pred             eCC------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          114 DAY------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       114 ~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      +..            .+|+++++++ +...+..     ....|++++++++|+++|++++.                 .+
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~-----~~~~pngi~~spdg~~lyv~~~~-----------------~~  171 (297)
T 3g4e_A          115 TMAEETAPAVLERHQGALYSLFPDH-HVKKYFD-----QVDISNGLDWSLDHKIFYYIDSL-----------------SY  171 (297)
T ss_dssp             EEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE-----EESBEEEEEECTTSCEEEEEEGG-----------------GT
T ss_pred             cCCcccccccccCCCcEEEEEECCC-CEEEEee-----ccccccceEEcCCCCEEEEecCC-----------------CC
Confidence            732            2599999874 4433332     23468999999999889999643                 34


Q ss_pred             eEEEEeC--CCCcEE---EEe---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-CCCCceE
Q 018242          182 RLMKYDP--ATKQVT---VLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIK  252 (359)
Q Consensus       182 ~v~~~d~--~~~~~~---~~~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i~  252 (359)
                      .|++++.  .++.+.   .+.   .....|.+++++++|+ +|++...+++|.+|+.+..   +.......+ ..|.+++
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~~~t~~~  247 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---KRLQTVKLPVDKTTSCC  247 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---CEEEEEECSSSBEEEEE
T ss_pred             cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---eEEEEEECCCCCceEEE
Confidence            6777764  455442   121   1224689999999996 8999988899999986532   222222333 4578899


Q ss_pred             EC-CCC-CEEEEEecCC
Q 018242          253 RS-PRG-GFWVGIHSRR  267 (359)
Q Consensus       253 ~d-~~G-~lwv~~~~~~  267 (359)
                      +. +++ .|||++...+
T Consensus       248 f~g~d~~~L~vt~~~~~  264 (297)
T 3g4e_A          248 FGGKNYSEMYVTCARDG  264 (297)
T ss_dssp             EESGGGCEEEEEEBCTT
T ss_pred             EeCCCCCEEEEEcCCcC
Confidence            97 665 5999887543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.5e-13  Score=122.86  Aligned_cols=189  Identities=16%  Similarity=0.193  Sum_probs=129.4

Q ss_pred             CCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEE-eecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHF-ARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..|.+++++++ |+ +|++...++|+++|++ +++..+ ...                ........|.++++++ +|++|
T Consensus        71 ~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~~~~~----------------~~~~~~~~~~~i~~d~-~g~l~  131 (314)
T 1pjx_A           71 GIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEIAKKD----------------SEGRRMQGCNDCAFDY-EGNLW  131 (314)
T ss_dssp             CCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEECCSBC----------------TTSCBCBCCCEEEECT-TSCEE
T ss_pred             CCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEEEecc----------------CCCccccCCcCEEECC-CCCEE
Confidence            57899999999 87 7777766699999998 655543 210                0001123478999999 89999


Q ss_pred             EEeCC----------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEe----CCCCEEEEEeCCCccccccce
Q 018242          112 IADAY----------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID----QSTGIIYFTDSSSQFQRRNHI  171 (359)
Q Consensus       112 v~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d----~~g~~l~v~d~~~~~~~~~~~  171 (359)
                      +++..                .+|++++++ ++.+.+..     ....+++++++    ++|+++|+++..         
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-----~~~~~~~i~~~~~~d~dg~~l~v~~~~---------  196 (314)
T 1pjx_A          132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-----AFQFPNGIAVRHMNDGRPYQLIVAETP---------  196 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-----EESSEEEEEEEECTTSCEEEEEEEETT---------
T ss_pred             EEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-----CCCCcceEEEecccCCCCCEEEEEECC---------
Confidence            99864                369999987 55544432     22357889999    999669999643         


Q ss_pred             eeeeecCCCceEEEEeCC-CCcEE---EEe--C-CC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec
Q 018242          172 SVILSGDKTGRLMKYDPA-TKQVT---VLL--G-NL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ  243 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~-~~~~~---~~~--~-~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (359)
                              .+.|++++.+ ++++.   .+.  . .. ..|.+++++++|+ +|++...+++|.+|+.+..+.  ...+..
T Consensus       197 --------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~--~~~~~~  265 (314)
T 1pjx_A          197 --------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP--KMRIRC  265 (314)
T ss_dssp             --------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC--SEEEEC
T ss_pred             --------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE--eEEEeC
Confidence                    3478888864 34322   111  1 11 4589999999986 899987888999998653221  122222


Q ss_pred             CCCCCCceEECCCCC-EEEEEecCC
Q 018242          244 LPGFPDNIKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       244 ~~~~p~~i~~d~~G~-lwv~~~~~~  267 (359)
                      ....|.+++++++|+ ||+++...+
T Consensus       266 ~~~~~~~i~~~~dg~~l~v~~~~~~  290 (314)
T 1pjx_A          266 PFEKPSNLHFKPQTKTIFVTEHENN  290 (314)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCceeEEECCCCCEEEEEeCCCC
Confidence            224578899999998 999886543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.58  E-value=1.5e-12  Score=118.17  Aligned_cols=207  Identities=13%  Similarity=0.083  Sum_probs=129.7

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcC-CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQD-QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ...|.+++++++|+.+|++. .++.+..|+.+ ++....+...... +  .+|      ........++++++++ +|++
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~--~~p------~~~~~~~~~~~~~~sp-dg~l  154 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-G--HGP------RPEQDGSHIHYTDLTP-DNRL  154 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-C--CCS------STTCSSCCEEEEEECT-TSCE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-C--CCC------CccccCCCceEEEECC-CCcE
Confidence            46899999999999788776 56889999975 3333332211000 0  000      0001123467899999 6669


Q ss_pred             EEEeCCC-cEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          111 YIADAYF-GLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       111 ~v~~~~~-~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      |+++... .|..++.+ ++++...... .......|+.++++|+|+++|+++...               ..-.++.++.
T Consensus       155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~---------------~~v~v~~~~~  218 (347)
T 3hfq_A          155 AVIDLGSDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELS---------------SQIASLKYDT  218 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEEEET
T ss_pred             EEEeCCCCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCC---------------CEEEEEEecC
Confidence            9887654 48888876 5655433211 111223677899999999889885431               1123455555


Q ss_pred             CCCcEEEEe---CC------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCCCCCceEECCC
Q 018242          189 ATKQVTVLL---GN------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPR  256 (359)
Q Consensus       189 ~~~~~~~~~---~~------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~  256 (359)
                      .++++....   ..      ...|.+++++|||++||++...++.|.+|+++...  ..+....   ....|.+++++++
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~spd  296 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG--HLTLIQQISTEGDFPRDFDLDPT  296 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG--CEEEEEEEECSSSCCCEEEECTT
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC--cEEEeEEEecCCCCcCeEEECCC
Confidence            456554321   11      13477899999999999999888999999986331  2222222   2345899999999


Q ss_pred             CC-EEEEEecCC
Q 018242          257 GG-FWVGIHSRR  267 (359)
Q Consensus       257 G~-lwv~~~~~~  267 (359)
                      |+ ||++....+
T Consensus       297 g~~l~v~~~~~~  308 (347)
T 3hfq_A          297 EAFVVVVNQNTD  308 (347)
T ss_dssp             SSEEEEEETTTT
T ss_pred             CCEEEEEEcCCC
Confidence            97 777776544

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=6.9e-13  Score=119.75  Aligned_cols=187  Identities=13%  Similarity=0.193  Sum_probs=128.8

Q ss_pred             CCCCceEEEccCCCeeEEecC-C----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242           33 AIGPESLAFDALGEGPYTGVS-D----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN  107 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (359)
                      ...|.+++++++|+ +|++.. +    ++|+++|++++....+.                  ........+.++++++ +
T Consensus        86 ~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~~~~~~~~~i~~d~-~  145 (333)
T 2dg1_A           86 KANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDII------------------EDLSTAYCIDDMVFDS-K  145 (333)
T ss_dssp             SSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEE------------------CSSSSCCCEEEEEECT-T
T ss_pred             CCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEE------------------ccCccCCcccceEECC-C
Confidence            35789999999999 666554 3    58999999887554321                  0011224578999999 8


Q ss_pred             CeEEEEeCC-------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          108 GDLYIADAY-------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       108 g~l~v~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      |++|+++..       .+|+++++++++.+.+..     ....+++++++++|+++|+++..                 .
T Consensus       146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~~dg~~l~v~~~~-----------------~  203 (333)
T 2dg1_A          146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETT-----------------A  203 (333)
T ss_dssp             SCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGG-----------------G
T ss_pred             CCEEEEeccccccCCCceEEEEeCCCCEEEEeec-----CCCcccceEECCCCCEEEEEeCC-----------------C
Confidence            899999763       469999998877655432     22357899999999879998532                 3


Q ss_pred             ceEEEEeCCC--CcEEEE----e---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC-----
Q 018242          181 GRLMKYDPAT--KQVTVL----L---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-----  246 (359)
Q Consensus       181 g~v~~~d~~~--~~~~~~----~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----  246 (359)
                      +.|++++.++  .....+    .   .....|.+++++++|+ +|++...+++|.+|+.++.   ....+.....     
T Consensus       204 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~---~~~~~~~~~~~~g~~  279 (333)
T 2dg1_A          204 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY---PIGQILIPGRDEGHM  279 (333)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC---EEEEEECTTGGGTCS
T ss_pred             CeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC---EEEEEEcCCCccccc
Confidence            4788888742  223211    1   1124688999999987 8888877889999986422   1222222111     


Q ss_pred             -CCCceEECCCC-CEEEEEec
Q 018242          247 -FPDNIKRSPRG-GFWVGIHS  265 (359)
Q Consensus       247 -~p~~i~~d~~G-~lwv~~~~  265 (359)
                       .|.+++++++| .||+++..
T Consensus       280 ~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          280 LRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CBCCEEEECTTSCEEEEEEEC
T ss_pred             cCcceEEECCCCCEEEEEeCc
Confidence             58889999886 69998865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.57  E-value=1.8e-12  Score=125.44  Aligned_cols=197  Identities=12%  Similarity=0.052  Sum_probs=133.1

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEc--CCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ--DQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      +.++..+.  .|++++++|||+++|++..++.|..||.  .+.+...                    .+. ....|.+++
T Consensus       172 ~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~--------------------~i~-~g~~p~~va  228 (543)
T 1nir_A          172 VKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA--------------------EIK-IGIEARSVE  228 (543)
T ss_dssp             EEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE--------------------EEE-CCSEEEEEE
T ss_pred             EEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE--------------------EEe-cCCCcceEE
Confidence            33555443  4899999999999999998899999999  5543221                    122 235689999


Q ss_pred             Eec----CCCeEEEEeC-CCcEEEEeCCCCeEEEEeecC----CC---ccccccceEEEeCCCCEEEEEeCCCccccccc
Q 018242          103 FNK----TNGDLYIADA-YFGLLKVGPEGGLATAVATQS----EG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH  170 (359)
Q Consensus       103 ~~~----~~g~l~v~~~-~~~i~~~~~~~~~~~~~~~~~----~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~  170 (359)
                      +++    ++..+|+++. .+.|..+|..+++........    ..   .+...+.+++++++++++|++..         
T Consensus       229 ~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~---------  299 (543)
T 1nir_A          229 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK---------  299 (543)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET---------
T ss_pred             eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC---------
Confidence            999    8899999975 356888998887754332211    00   01225678999999886777643         


Q ss_pred             eeeeeecCCCceEEEEeCCCCcEEE--EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCC
Q 018242          171 ISVILSGDKTGRLMKYDPATKQVTV--LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP  248 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~~~~~~--~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p  248 (359)
                              ..+.|..+|..+.+...  .......|.+++|+||++++|+++..++.|.+||....+.   .........|
T Consensus       300 --------~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l---~~~i~~g~~p  368 (543)
T 1nir_A          300 --------ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL---SALVDVGKTP  368 (543)
T ss_dssp             --------TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEECSSSB
T ss_pred             --------CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE---EEeeccCCCC
Confidence                    25689999987543211  1233467899999999999999998889999999765422   1111222223


Q ss_pred             ---CceE-ECCC-CCEEEEEe
Q 018242          249 ---DNIK-RSPR-GGFWVGIH  264 (359)
Q Consensus       249 ---~~i~-~d~~-G~lwv~~~  264 (359)
                         .+.. ++++ |.+|++..
T Consensus       369 h~g~g~~~~~p~~g~~~~s~~  389 (543)
T 1nir_A          369 HPGRGANFVHPKYGPVWSTSH  389 (543)
T ss_dssp             CCTTCEEEEETTTEEEEEEEB
T ss_pred             CCCCCcccCCCCCccEEEecc
Confidence               2443 3666 67898765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.56  E-value=1.7e-13  Score=138.01  Aligned_cols=203  Identities=15%  Similarity=0.132  Sum_probs=123.7

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCc---ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      -.++..|++|+ +|+++. ++++++++.++   .++.+....        +      ...........|..|+ +|+||+
T Consensus       326 v~~i~~D~~g~-lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~--------~------~~~l~~~~v~~i~~d~-~g~lWi  388 (758)
T 3ott_A          326 FYSLFRDSKGF-YWFGGA-NGLIRFTDPAGERHDAIWYRMGD--------K------TYPLSHNRIRHIYEDK-EQQLWI  388 (758)
T ss_dssp             EEEEEECTTCC-EEEEET-TEEEEESCTTSSCCCCEEECTTC--------S------SSCCSCSCEEEEEECT-TSCEEE
T ss_pred             EEEEEEcCCCC-EEEeeC-CcceeecccccccceeEEeccCC--------c------CCCCCCCceEEEEECC-CCCEEE
Confidence            35788899999 999986 58999988753   233332000        0      0000112356788887 899999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCC--CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSE--GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ++ .+||.++++++++++.+.....  ..+...+..+..|++|+ ||++..                  .++|+++++++
T Consensus       389 gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~------------------~~Gl~~~~~~~  448 (758)
T 3ott_A          389 AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTC------------------LGGIFVVDKHK  448 (758)
T ss_dssp             EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEES------------------SSCEEEEEHHH
T ss_pred             Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEEC------------------CCceEEEcccc
Confidence            98 4599999999988876542111  11234567899999999 999942                  34699998653


Q ss_pred             ------CcEE---EEe--CCCC--CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CC--CCCCceEE
Q 018242          191 ------KQVT---VLL--GNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LP--GFPDNIKR  253 (359)
Q Consensus       191 ------~~~~---~~~--~~~~--~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~--~~p~~i~~  253 (359)
                            +.+.   .+.  .++.  ....|..+++|+ +|+.....++|++++.+..   ....+..  +.  ..+..+..
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~  524 (758)
T 3ott_A          449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTR---EVTKLFADELTGEKSPNYLLC  524 (758)
T ss_dssp             HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEE
T ss_pred             ccccCCcceecccccccccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCC---ceEEecCCCcCCCcccceEEE
Confidence                  1221   111  1122  235677777776 6763334468999996543   2333321  11  23456888


Q ss_pred             CCCCCEEEEEecCCCccccccccCCccceeeec
Q 018242          254 SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIK  286 (359)
Q Consensus       254 d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~  286 (359)
                      |++|+||+++.. +      +.++++..+.+..
T Consensus       525 d~~g~lWigt~~-G------l~~~~~~~~~~~~  550 (758)
T 3ott_A          525 DEDGLLWVGFHG-G------VMRINPKDESQQS  550 (758)
T ss_dssp             CTTSCEEEEETT-E------EEEECC--CCCCB
T ss_pred             CCCCCEEEEecC-c------eEEEecCCCceEE
Confidence            999999999853 3      5666654443333

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.55  E-value=4.6e-12  Score=114.43  Aligned_cols=174  Identities=11%  Similarity=0.074  Sum_probs=115.5

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ++.+.++..|++|++.+||+ +|++.. .|+|+++++++++...+...+.              ........+.||+++|
T Consensus        25 ~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~--------------v~~~g~~GllGia~~P   89 (347)
T 3das_A           25 RTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPG--------------VSPSGEGGLLGIALSP   89 (347)
T ss_dssp             EEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTT--------------CCCBTTBSEEEEEECT
T ss_pred             EEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCc--------------eeecCCCCceeeEecc
Confidence            44556699999999999999 777766 7999999887654443321100              1122335589999998


Q ss_pred             C---CCeEEEEeC---CCcEEEEeCCCC--------eEEEEeecCCCccccccceEEEeCCCCEEEEEeCC--Ccccccc
Q 018242          106 T---NGDLYIADA---YFGLLKVGPEGG--------LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS--SQFQRRN  169 (359)
Q Consensus       106 ~---~g~l~v~~~---~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~--~~~~~~~  169 (359)
                      +   ++.||++..   .+.|.|+..+.+        ..+.+....+....+....|++++||. |||+.-.  ......+
T Consensus        90 df~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd  168 (347)
T 3das_A           90 DYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQD  168 (347)
T ss_dssp             THHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTC
T ss_pred             ccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccC
Confidence            4   689999732   346999977652        123333322222345677899999999 9999422  1100000


Q ss_pred             ceeeeeecCCCceEEEEeCCCC--------cEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242          170 HISVILSGDKTGRLMKYDPATK--------QVTVLLGNLSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       170 ~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                            .....|+|+++++++.        ..+.+..+...|.|++++++|+ ||+++...+
T Consensus       169 ------~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~  223 (347)
T 3das_A          169 ------RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQD  223 (347)
T ss_dssp             ------TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSS
T ss_pred             ------CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCC
Confidence                  1134688999999854        2345566778899999999876 899997654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.55  E-value=8.4e-13  Score=124.00  Aligned_cols=154  Identities=16%  Similarity=0.133  Sum_probs=108.9

Q ss_pred             CCcceEEEEecC--CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242           95 CGRPLGLCFNKT--NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS  172 (359)
Q Consensus        95 ~~~p~gi~~~~~--~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~  172 (359)
                      ...|.+|+++++  +++||+++..+.|.++++++++++.+..     ....|++|+++++|+ ||+++....        
T Consensus       138 ~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----~~~~P~giavd~dG~-lyVad~~~~--------  203 (433)
T 4hw6_A          138 FDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----NIGQCADVNFTLNGD-MVVVDDQSS--------  203 (433)
T ss_dssp             CSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----CCSCEEEEEECTTCC-EEEEECCSC--------
T ss_pred             cCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----CCCCccEEEECCCCC-EEEEcCCCC--------
Confidence            356999999983  6999999876779999998888876643     345799999999999 999986421        


Q ss_pred             eeeecCCCceEEEEeCCCCcE-EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCc
Q 018242          173 VILSGDKTGRLMKYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDN  250 (359)
Q Consensus       173 ~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~  250 (359)
                           .....++.+++.++.. ......+..|+++++++++..|||++..+++|++++.+..... ...+.. ....+.+
T Consensus       204 -----~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~  277 (433)
T 4hw6_A          204 -----DTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFH  277 (433)
T ss_dssp             -----TTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEE
T ss_pred             -----cccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-EEEeccCCCCCccc
Confidence                 1122466666653322 1122346789999999944459999999999999987533210 112222 2233456


Q ss_pred             eEECCCCC-EEEEEecCCC
Q 018242          251 IKRSPRGG-FWVGIHSRRK  268 (359)
Q Consensus       251 i~~d~~G~-lwv~~~~~~~  268 (359)
                      |++|++|+ ||++....+.
T Consensus       278 ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             EEECTTSSEEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEeCCCCE
Confidence            99999998 9999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.54  E-value=3.9e-12  Score=114.46  Aligned_cols=198  Identities=12%  Similarity=0.056  Sum_probs=128.6

Q ss_pred             EEccCCCeeE-EecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-C
Q 018242           40 AFDALGEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-F  117 (359)
Q Consensus        40 ~~~~~G~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~  117 (359)
                      .++.+++.+| ++..++.|..||..+++.....                    ......+ ++++++++..+|++... +
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI--------------------TLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE--------------------ECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE--------------------EccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            3445555455 5566789999999887554321                    1122345 89999955568888763 4


Q ss_pred             cEEEEeCCCCeE-EEEeecCCCccccccce-EEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          118 GLLKVGPEGGLA-TAVATQSEGIPFRFCNS-LDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       118 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .|.++|.++++. .....     ....+.. ++++|+|+++|++...               ...+.|..+|.++++...
T Consensus        63 ~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~~---------------~~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQ-----EGQSSMADVDITPDDQFAVTVTGL---------------NHPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             EEEEEECSSSSCEEEEEE-----ECSSCCCCEEECTTSSEEEECCCS---------------SSSCEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCceeEEecc-----cCCCCccceEECCCCCEEEEecCC---------------CCcccEEEEECCCCCeEE
Confidence            699999988875 32222     1124556 9999999977733111               011279999998877665


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCE-EEEEEcCCCCC-ccee-EeecCCCCCCceEECCCCC-EEEEEecCCCccc
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCR-ILRYWLKTSKA-GTIE-IVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGIS  271 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~-i~~~~~~~~~~-~~~~-~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~  271 (359)
                      .......|.+++++|||+.+|+++...+. |..|+++.... .... ........|.+++++++|+ +|++....+.   
T Consensus       123 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~---  199 (331)
T 3u4y_A          123 TIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS---  199 (331)
T ss_dssp             EEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE---
T ss_pred             EEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe---
Confidence            54445668999999999989999888777 99999874322 1111 1112334588899999997 8888765543   


Q ss_pred             cccccCCc-ccee
Q 018242          272 KLVLSFPW-IGNV  283 (359)
Q Consensus       272 ~~~~~~~~-~g~~  283 (359)
                        +.+++. .++.
T Consensus       200 --v~v~d~~~~~~  210 (331)
T 3u4y_A          200 --IGILETQNPEN  210 (331)
T ss_dssp             --EEEEECSSTTS
T ss_pred             --EEEEECCCCcc
Confidence              444443 4554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.54  E-value=2e-13  Score=135.73  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=114.0

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCCC----CeE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPEG----GLA  129 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~----~~~  129 (359)
                      +.|.++++++.+...                     +......|.+|++++.++.||+++.. +.|+++++++    ...
T Consensus       386 ~~I~~id~~~~~~~~---------------------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~  444 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTS---------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY  444 (699)
T ss_dssp             TC-CEECTTSCCEEC---------------------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC
T ss_pred             cceEEEeCCCCccee---------------------eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce
Confidence            568888887653321                     12234568899999878999999765 4699999886    221


Q ss_pred             EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEE
Q 018242          130 TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVAL  208 (359)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~  208 (359)
                      ..+.    ...+..|.+|++|+.++.||++|..                 .+.|.++++++...+.+. ..+..|++|++
T Consensus       445 ~~~i----~~~~~~P~glavD~~~g~LY~tD~~-----------------~~~I~v~d~dg~~~~~l~~~~~~~P~giav  503 (699)
T 1n7d_A          445 DTVI----SRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFREQGSKPRAIVV  503 (699)
T ss_dssp             CCBC----CSCC--CCCEECCCSSSBCEECCTT-----------------TSCEEEEBSSSCCEEEECCCSSCCCCCEEC
T ss_pred             EEEE----eCCCCCcceEEEEeeCCcEEEEecc-----------------CCeEEEEecCCCceEEEEeCCCCCcceEEE
Confidence            1111    1123468899999544349999754                 347999999866555544 34678999999


Q ss_pred             ccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEee-cCCCCCCceEECCC-CCEEEEEecC
Q 018242          209 SEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPR-GGFWVGIHSR  266 (359)
Q Consensus       209 ~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~-G~lwv~~~~~  266 (359)
                      +|+++.|||++... ++|+++++++..   .+.+. ..-..|++|++|++ ++||++....
T Consensus       504 Dp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~  561 (699)
T 1n7d_A          504 DPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL  561 (699)
T ss_dssp             CSSSSCCEECCCSSSCCEEBCCSSSCC---CCEESCSSCSSCCCEEECTTTCCEEEEETTT
T ss_pred             ccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEEeCCCCCccEEEEeccCCEEEEEecCC
Confidence            99877899999765 789999876532   22222 22246999999975 6899998654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.54  E-value=9.7e-12  Score=120.28  Aligned_cols=201  Identities=9%  Similarity=-0.036  Sum_probs=140.1

Q ss_pred             EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcE
Q 018242           40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGL  119 (359)
Q Consensus        40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i  119 (359)
                      +++++|+++.+...++.|..||..+++...                    .+. ....++++++++++..||+++..+.|
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~--------------------~i~-~g~~~~~v~~spdg~~l~v~~~d~~V  202 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK--------------------VID-TGYAVHISRMSASGRYLLVIGRDARI  202 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEE--------------------EEE-CSTTEEEEEECTTSCEEEEEETTSEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEE--------------------EEe-cCcccceEEECCCCCEEEEECCCCeE
Confidence            478888855566677899999998875432                    111 12238899999977789999877779


Q ss_pred             EEEeC--CCCeEEEEeecCCCccccccceEEEeC----CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          120 LKVGP--EGGLATAVATQSEGIPFRFCNSLDIDQ----STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       120 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~d~----~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+|.  .+++......     ....|.+++++|    +|+++|+++.                 ..+.|..+|..+++.
T Consensus       203 ~v~D~~~~t~~~~~~i~-----~g~~p~~va~sp~~~~dg~~l~v~~~-----------------~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          203 DMIDLWAKEPTKVAEIK-----IGIEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEETTSSSCEEEEEEE-----CCSEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCE
T ss_pred             EEEECcCCCCcEEEEEe-----cCCCcceEEeCCCcCCCCCEEEEEEc-----------------cCCeEEEEecccccc
Confidence            99999  6665432222     123678999999    9998999842                 135688889887765


Q ss_pred             EEEeCC------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EE
Q 018242          194 TVLLGN------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FW  260 (359)
Q Consensus       194 ~~~~~~------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  260 (359)
                      ......            ...+.+++++++++.+|++...++.|+.++....+......+ .....|.++++|++|+ ++
T Consensus       261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~  339 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFM  339 (543)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEE
T ss_pred             ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEE
Confidence            543221            124568999999999999999999999999865432221122 2345689999999998 66


Q ss_pred             EEEecCCCccccccccCC-ccceeeecCCc
Q 018242          261 VGIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      ++....+.     +.+++ .+++++..++.
T Consensus       340 va~~~~~~-----v~v~D~~tg~l~~~i~~  364 (543)
T 1nir_A          340 TAANNSNK-----VAVIDSKDRRLSALVDV  364 (543)
T ss_dssp             EEEGGGTE-----EEEEETTTTEEEEEEEC
T ss_pred             EEecCCCe-----EEEEECCCCeEEEeecc
Confidence            66665554     44444 57888777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.53  E-value=3.7e-12  Score=114.56  Aligned_cols=206  Identities=13%  Similarity=0.051  Sum_probs=128.4

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++.+|+++..++|++++++ ++....... .   ......++++++|+ +|++.                  ..++|+++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~---~~~~~~~~~~~~g~-l~vgt------------------~~~~l~~~  162 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-K---KAIYATPIVSEDGT-IYVGS------------------NDNYLYAI  162 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC-S---SCCCSCCEECTTSC-EEEEC------------------TTSEEEEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC-C---CceeeeeEEcCCCE-EEEEc------------------CCCEEEEE
Confidence            8899999877789999998 554322221 1   12345678899999 99983                  23589999


Q ss_pred             eCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEe
Q 018242          187 DPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       187 d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      |++ ++... ..........++++++++ +|++.   +.|++++. ..   ....... .......+++|++|+||+++.
T Consensus       163 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t---~~l~~~d~-~g---~~~~~~~~~~~~~~~~~~~~~g~l~v~t~  233 (330)
T 3hxj_A          163 NPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS---DKVYAINP-DG---TEKWNFYAGYWTVTRPAISEDGTIYVTSL  233 (330)
T ss_dssp             CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES---SSEEEECT-TS---CEEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred             CCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe---CEEEEECC-CC---cEEEEEccCCcceeceEECCCCeEEEEcC
Confidence            998 55543 222233445677777776 77765   78999982 21   1111111 223466789999999999987


Q ss_pred             cCCCccccccccCCccceeeecCCccceeeeeeccc-------ccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEE
Q 018242          265 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVK-------LSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE  337 (359)
Q Consensus       265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~  337 (359)
                      .++      +..++++++.+..++.+.......+..       +... +.+.++|++|+.+..+....    ..+..+..
T Consensus       234 ~~g------l~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~-ggl~~~d~~g~~~~~~~~~~----~~~~~~~~  302 (330)
T 3hxj_A          234 DGH------LYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYD-GHLYAINPDGTEKWNFETGS----WIIATPVI  302 (330)
T ss_dssp             TTE------EEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTT-CEEEEECTTSCEEEEEECSS----CCCSCCEE
T ss_pred             CCe------EEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCC-CCEEEECCCCcEEEEEEcCC----ccccceEE
Confidence            554      666677777766544332211212211       1222 47889998888877765422    22333444


Q ss_pred             -eCCEEEEecCCCCeEEEEcC
Q 018242          338 -KDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       338 -~~g~l~ig~~~~~~l~~~~~  357 (359)
                       .+|+||+|+. +..+.+.+.
T Consensus       303 d~~g~l~~gt~-~G~~~~~~~  322 (330)
T 3hxj_A          303 DENGTIYFGTR-NGKFYALFN  322 (330)
T ss_dssp             CTTCCEEEECT-TSCEEEEEC
T ss_pred             cCCCEEEEEcC-CCeEEEEec
Confidence             5899999996 555655543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=6.3e-13  Score=124.80  Aligned_cols=153  Identities=12%  Similarity=0.148  Sum_probs=111.8

Q ss_pred             CCcceEEEEec-CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242           95 CGRPLGLCFNK-TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus        95 ~~~p~gi~~~~-~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      ...|.+|++++ ++++||+++..+.|.+++++++.++.+..     ....|.+|+++++|++||+++....         
T Consensus       136 ~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----~~~~P~~ia~d~~G~~lyvad~~~~---------  201 (430)
T 3tc9_A          136 FGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----GLSKVRTICWTHEADSMIITNDQNN---------  201 (430)
T ss_dssp             CSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----CCSCEEEEEECTTSSEEEEEECCSC---------
T ss_pred             CCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----CCCCcceEEEeCCCCEEEEEeCCCC---------
Confidence            35799999997 47999999876679999999988776543     3457899999999999999986421         


Q ss_pred             eeecCCCceEEEEeCCCCcE-EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--CCCCCc
Q 018242          174 ILSGDKTGRLMKYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDN  250 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~  250 (359)
                          .....++.+++++... .........|.+++++|++..||+++..+++|++|+.++..   ...+...  ...|.+
T Consensus       202 ----~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~g  274 (430)
T 3tc9_A          202 ----NDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEFH  274 (430)
T ss_dssp             ----TTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCEE
T ss_pred             ----cccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCccee
Confidence                1122466677654322 01223467899999999545599999999999999976432   2122222  246999


Q ss_pred             eEECCCCC-EEEEEecCCC
Q 018242          251 IKRSPRGG-FWVGIHSRRK  268 (359)
Q Consensus       251 i~~d~~G~-lwv~~~~~~~  268 (359)
                      |++|++|+ ||++....+.
T Consensus       275 ia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          275 IQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             EEECTTSSEEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEECCCCE
Confidence            99999998 9999877654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.52  E-value=1.2e-11  Score=115.55  Aligned_cols=274  Identities=15%  Similarity=0.139  Sum_probs=168.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..|.++++++++++++++..++.|..||..+++.......           +    ..........++++++ ++++|++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-----------~----~~~~~~~~v~~~~~~~-~~~~~~s  186 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP-----------E----KYKKKLGFVETISIPE-HNELWVS  186 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC-----------H----HHHTTCCEEEEEEEGG-GTEEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc-----------c----cccccCCceeEEEEcC-CCEEEEE
Confidence            4678999999777455556667899999988754432100           0    1112223466788877 8888887


Q ss_pred             eCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ... +.|..+|.++++.......    ....+..++++++|+++|++..                 ..+.|..+|..+++
T Consensus       187 ~~~d~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d~~~~~  245 (433)
T 3bws_A          187 QMQANAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNW-----------------ISEDISVIDRKTKL  245 (433)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTTTE
T ss_pred             ECCCCEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEec-----------------CCCcEEEEECCCCc
Confidence            654 4588999988765432221    1236788999999997777742                 24679999998777


Q ss_pred             EEEEeCCCCCCceEEEccCCCEEEEEec-------CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe
Q 018242          193 VTVLLGNLSFPNGVALSEDGNYILLAET-------TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~  264 (359)
                      ..........+.+++++|+++.++++..       .++.|+.|++...+.   ......++.+.+++++++|+ +|++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~  322 (433)
T 3bws_A          246 EIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL---IDTIGPPGNKRHIVSGNTENKIYVSDM  322 (433)
T ss_dssp             EEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE---EEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred             EEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE---EeeccCCCCcceEEECCCCCEEEEEec
Confidence            6554444455889999999998888875       457899999865421   11111233467899999995 777765


Q ss_pred             cCCCccccccccCCc-cceeeecCCccceeeeeecccccCcc----------------------eEEEEECCC-CCEEEE
Q 018242          265 SRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSSLVKLSGNG----------------------GMAMRISEQ-GNVLEI  320 (359)
Q Consensus       265 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~-g~~~~~  320 (359)
                      ..+.     +..++. .++....++.. ..+..+++..+...                      +.+..+|.+ ++.+..
T Consensus       323 ~~~~-----v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          323 CCSK-----IEVYDLKEKKVQKSIPVF-DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             TTTE-----EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred             CCCE-----EEEEECCCCcEEEEecCC-CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence            5554     555543 56665555432 22333333322220                      123333322 222222


Q ss_pred             EEccCCceeeceEEEEEe--CCEEEEecCCCCeEEEEcCC
Q 018242          321 LEEIGRKMWRSISEVEEK--DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       321 ~~~~~g~~~~~~~~~~~~--~g~l~ig~~~~~~l~~~~~~  358 (359)
                      +..  +   ..+..+...  +..|++++..+..|.+++++
T Consensus       397 ~~~--~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          397 WEA--G---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEC--S---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ecC--C---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            221  1   133444443  44677787778889998875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.51  E-value=2.3e-12  Score=115.30  Aligned_cols=189  Identities=12%  Similarity=0.167  Sum_probs=126.4

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...|.+++++++|+ +|++. ..++|++++++ ++++.+...                ........|..+++++ +|++|
T Consensus        85 ~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~~~~~----------------~~~~~~~~~~~i~~d~-dG~l~  145 (305)
T 3dr2_A           85 TAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHLLVGR----------------YAGKRLNSPNDLIVAR-DGAIW  145 (305)
T ss_dssp             CSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEECE----------------ETTEECSCCCCEEECT-TSCEE
T ss_pred             CCccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEEEEec----------------cCCCccCCCCCEEECC-CCCEE
Confidence            35789999999999 66665 45799999987 455554311                0011224577899999 89999


Q ss_pred             EEeC------------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          112 IADA------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       112 v~~~------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      +++.                  ..+|+++++++++++.+.      ....|++++++++|+.||+++....         
T Consensus       146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------~~~~p~gl~~spdg~~lyv~~~~~~---------  210 (305)
T 3dr2_A          146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------DLDHPNGLAFSPDEQTLYVSQTPEQ---------  210 (305)
T ss_dssp             EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------EESSEEEEEECTTSSEEEEEECCC----------
T ss_pred             EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------cCCCCcceEEcCCCCEEEEEecCCc---------
Confidence            9642                  236999999888766543      2346889999999998999975411         


Q ss_pred             eeecCCCceEEEEeCCCCcEE---EEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC
Q 018242          174 ILSGDKTGRLMKYDPATKQVT---VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD  249 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~---~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~  249 (359)
                         ....+.|++++.+++.+.   .+. .....|.+++++++|+ +|++.  .++|++|+.++.   ....+ ..+..+.
T Consensus       211 ---~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~---~~~~~-~~~~~~~  280 (305)
T 3dr2_A          211 ---GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQ---LLGHI-PTPGTAS  280 (305)
T ss_dssp             -----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSC---EEEEE-ECSSCCC
T ss_pred             ---CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCC---EEEEE-ECCCcee
Confidence               001246888876543321   111 1234689999999998 77775  457999986432   11222 2344588


Q ss_pred             ceEECCCC-CEEEEEec
Q 018242          250 NIKRSPRG-GFWVGIHS  265 (359)
Q Consensus       250 ~i~~d~~G-~lwv~~~~  265 (359)
                      ++++++++ .||+++..
T Consensus       281 ~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          281 NCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEEECTTSCEEEEEETT
T ss_pred             EEEEeCCCCEEEEEcCC
Confidence            89998777 59998863

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.49  E-value=3.7e-11  Score=108.10  Aligned_cols=197  Identities=9%  Similarity=0.060  Sum_probs=125.2

Q ss_pred             CCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .|.+++++++|+.+|++.. ++.|..||...+......                  ........+.++++++++..+|++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~~~  146 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------------------DVVEGLDGCHSANISPDNRTLWVP  146 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE------------------EEECCCTTBCCCEECTTSSEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc------------------ccccCCCCceEEEECCCCCEEEEe
Confidence            8999999999997776654 678999998422111110                  111122347789999955678888


Q ss_pred             e-CCCcEEEEeCCC-CeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC-
Q 018242          114 D-AYFGLLKVGPEG-GLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA-  189 (359)
Q Consensus       114 ~-~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-  189 (359)
                      + ..+.|..++..+ ++...... .........+..++++|+|+++|++...                 .+.|..++.+ 
T Consensus       147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~  209 (343)
T 1ri6_A          147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKD  209 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSC
T ss_pred             cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecC
Confidence            7 345688888876 65543220 0011112367789999999988888432                 3467777763 


Q ss_pred             -CCcEEE---Ee---CC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee--cCCCCCCceEECCCC
Q 018242          190 -TKQVTV---LL---GN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--QLPGFPDNIKRSPRG  257 (359)
Q Consensus       190 -~~~~~~---~~---~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~G  257 (359)
                       ++++..   ..   ..   ...+.+++++||++.+|++...++.|.+|+++... +..+...  ...+.|.+++++++|
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg  288 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-SVLSKEGFQPTETQPRGFNVDHSG  288 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-CCEEEEEEEECSSSCCCEEECTTS
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-CceEEeeeecCCCccceEEECCCC
Confidence             344322   11   11   12345799999999999999888999999986321 1122222  233448899999999


Q ss_pred             C-EEEEEecCC
Q 018242          258 G-FWVGIHSRR  267 (359)
Q Consensus       258 ~-lwv~~~~~~  267 (359)
                      + ||++....+
T Consensus       289 ~~l~~~~~~~~  299 (343)
T 1ri6_A          289 KYLIAAGQKSH  299 (343)
T ss_dssp             SEEEEECTTTC
T ss_pred             CEEEEecCCCC
Confidence            7 666654433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=5e-12  Score=119.16  Aligned_cols=161  Identities=12%  Similarity=0.142  Sum_probs=114.3

Q ss_pred             CcceEEEEec-CCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEE-------eCCCCEEEEEeCCCccc
Q 018242           96 GRPLGLCFNK-TNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI-------DQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus        96 ~~p~gi~~~~-~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------d~~g~~l~v~d~~~~~~  166 (359)
                      ..|.+|++|| ++++||++... ++|.++|++++.++.+..... ..+..|++|++       +++|++||+++....-.
T Consensus       139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~-~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT-IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT-SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc-cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            4689999998 37999999764 469999999999887765322 24557999999       99998899997652100


Q ss_pred             cccceeeeeecCCCceEEEEeCCC-CcEE-----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC-------CC
Q 018242          167 RRNHISVILSGDKTGRLMKYDPAT-KQVT-----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-------TS  233 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~~-~~~~-----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~-------~~  233 (359)
                                 .....|+.++++. +.+.     .....+..|++++++|+++.||+++..+++|++|+++       ..
T Consensus       218 -----------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg  286 (496)
T 3kya_A          218 -----------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG  286 (496)
T ss_dssp             -----------GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred             -----------ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence                       0012477776543 2331     1222456899999999777899999999999999987       33


Q ss_pred             CCc-----c----eeEeecC--CCCCCceEECCCCC-EEEEEecCCC
Q 018242          234 KAG-----T----IEIVAQL--PGFPDNIKRSPRGG-FWVGIHSRRK  268 (359)
Q Consensus       234 ~~~-----~----~~~~~~~--~~~p~~i~~d~~G~-lwv~~~~~~~  268 (359)
                      ...     .    .+.+...  ...|.+|++|++|+ ||++....+.
T Consensus       287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~  333 (496)
T 3kya_A          287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY  333 (496)
T ss_dssp             CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE
Confidence            320     0    2222222  24578999999998 8999987664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.48  E-value=1.6e-11  Score=112.98  Aligned_cols=210  Identities=13%  Similarity=0.157  Sum_probs=144.6

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+..+.  .+.+++++++|+.+|++. .++.|+.||..+++.....                     .....+.++++++
T Consensus        69 ~~~~~~--~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~---------------------~~~~~~~~~~~s~  125 (391)
T 1l0q_A           69 TVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---------------------KTGKSPLGLALSP  125 (391)
T ss_dssp             EEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------------------ECSSSEEEEEECT
T ss_pred             EEECCC--CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE---------------------eCCCCcceEEECC
Confidence            444443  888999999999776554 5689999999887443221                     1223578899999


Q ss_pred             CCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      ++..+|++... +.|..+|..+++.......     ...+..++++++|+++|++..                 ..+.|+
T Consensus       126 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~-----------------~~~~v~  183 (391)
T 1l0q_A          126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----GRSPKGIAVTPDGTKVYVANF-----------------DSMSIS  183 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----CSSEEEEEECTTSSEEEEEET-----------------TTTEEE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEec-----CCCcceEEECCCCCEEEEEeC-----------------CCCEEE
Confidence            55567777654 4589999988876543321     135678999999997888743                 246799


Q ss_pred             EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEec--CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242          185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV  261 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv  261 (359)
                      .+|..+++..........+.+++++++++.+|++..  .++.|..|++...+   .......+..|..++++++|+ +|+
T Consensus       184 ~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~  260 (391)
T 1l0q_A          184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK---ITARIPVGPDPAGIAVTPDGKKVYV  260 (391)
T ss_dssp             EEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE---EEEEEECCSSEEEEEECTTSSEEEE
T ss_pred             EEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe---EEEEEecCCCccEEEEccCCCEEEE
Confidence            999988776655444456789999999998998886  67899999976432   111122233467799999996 667


Q ss_pred             EEecCCCccccccccCC-ccceeeecCCc
Q 018242          262 GIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      +....+.     +.+++ ..++++..++.
T Consensus       261 s~~~d~~-----v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          261 ALSFXNT-----VSVIDTATNTITATMAV  284 (391)
T ss_dssp             EETTTTE-----EEEEETTTTEEEEEEEC
T ss_pred             EcCCCCE-----EEEEECCCCcEEEEEEC
Confidence            7655443     45554 35666665544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.48  E-value=9.3e-12  Score=125.30  Aligned_cols=178  Identities=13%  Similarity=0.179  Sum_probs=114.0

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+|..+++|. +|+++. .+++++|+.+..+...                   . .........+. +. +|+||+++..
T Consensus        66 ~~i~~d~~g~-lWigT~-~Gl~~yd~~~~~f~~~-------------------~-~~~~~~i~~i~-~~-~g~lWigt~~  121 (758)
T 3ott_A           66 YCGVIIDNTY-LYMGTD-NGILVYNYRADRYEQP-------------------E-TDFPTDVRTMA-LQ-GDTLWLGALN  121 (758)
T ss_dssp             EEEEEETTTE-EEEEET-TEEEEEETTTTEECCC-------------------S-CCCCSCEEEEE-EE-TTEEEEEETT
T ss_pred             EEEEEcCCCc-EEEEeC-CCeEEEeCCCCEEECc-------------------c-cCCCceEEEEE-ec-CCcEEEEcCC
Confidence            4678888888 999987 5799999988644320                   0 00011223343 34 7999999865


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                       ||++++.++++++.+.......+...+..+..|.+|+ ||++.                   .++|+++++.+++++.+
T Consensus       122 -Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt-------------------~~Gl~~~~~~~~~~~~~  180 (758)
T 3ott_A          122 -GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYVGT-------------------YNGLCRYIPSNGKFEGI  180 (758)
T ss_dssp             -EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEEEE-------------------TTEEEEEETTTTEEEEE
T ss_pred             -cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEEEe-------------------CCCHhhCccCCCceEEe
Confidence             9999999888876652211122334567889999999 99983                   23699999987776654


Q ss_pred             eCCCC------CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-CCCCCceEECCCCCEEEEEe
Q 018242          197 LGNLS------FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       197 ~~~~~------~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~lwv~~~  264 (359)
                      .....      ....+..+++++.||+.. . ++|++|+.....   ...+..+ ......++.|++|+||+++.
T Consensus       181 ~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWigT~  250 (758)
T 3ott_A          181 PLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQ---IKQTEAFHNNSIKSLALDGNGDLLAGTD  250 (758)
T ss_dssp             CCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTE---EEEEEEEEEEEEEEEEECTTCCEEEEET
T ss_pred             cCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCe---EEeccCCCCCeEEEEEEcCCCCEEEEeC
Confidence            32111      123556666666567654 3 589999865432   2222111 11235688899999999984

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.48  E-value=3.9e-11  Score=107.64  Aligned_cols=211  Identities=14%  Similarity=0.024  Sum_probs=133.8

Q ss_pred             EEEEeeCCCC-CCceEEEccCCCeeEEe-cCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccc---cCCcc
Q 018242           25 VVQYQIEGAI-GPESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEH---ICGRP   98 (359)
Q Consensus        25 ~~~~~~~~~~-~p~~i~~~~~G~~l~~~-~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p   98 (359)
                      ..++..+... .|.+++++++|+.+|++ ..++.|..||..+++... +.                   ...   ....|
T Consensus        24 ~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~   84 (337)
T 1pby_B           24 DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-------------------LSTPEERVKSL   84 (337)
T ss_dssp             EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-------------------CCBTTEEEECT
T ss_pred             EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-------------------cCCcccccccc
Confidence            3355555333 59999999999767655 456899999998765432 21                   111   01147


Q ss_pred             eEEEEecCCCeEEEEe------------CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccc
Q 018242           99 LGLCFNKTNGDLYIAD------------AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~  166 (359)
                      .++++++++..+|++.            ..+.|..+|.++++.......     ...+..++++|+|+++|++       
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~-------  152 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGL-------  152 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEE-------
T ss_pred             cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----CCCcceeEECCCCCEEEEe-------
Confidence            7899999556788885            235799999988876443321     1257789999999988887       


Q ss_pred             cccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC-----------------------
Q 018242          167 RRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC-----------------------  223 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~-----------------------  223 (359)
                                   .+.|+.+|..+++..........+..++++||++.+|++....+                       
T Consensus       153 -------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (337)
T 1pby_B          153 -------------GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT  219 (337)
T ss_dssp             -------------SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred             -------------CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccccc
Confidence                         23699999988776544332222344577889887777665544                       


Q ss_pred             EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCCc-cceeeecCC
Q 018242          224 RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPW-IGNVLIKLP  288 (359)
Q Consensus       224 ~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~  288 (359)
                      .|++|++...+.. ...+......|.+++++++|+ +|++  . +.     +.+++. .++.+..++
T Consensus       220 ~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~-~~-----v~~~d~~~~~~~~~~~  277 (337)
T 1pby_B          220 GLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--Y-NV-----LESFDLEKNASIKRVP  277 (337)
T ss_dssp             EEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--E-SE-----EEEEETTTTEEEEEEE
T ss_pred             ceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--C-Ce-----EEEEECCCCcCcceec
Confidence            4678887654322 111222334567799999997 6666  2 22     455543 455555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.48  E-value=9.6e-12  Score=113.70  Aligned_cols=179  Identities=15%  Similarity=0.123  Sum_probs=111.5

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +++++. ++..|++|+++++|+.+|++...++|+++++++...+.+...+          .    ........+.+|+++
T Consensus        10 ~~~va~-~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~----------~----v~~~g~~g~~gia~~   74 (353)
T 2g8s_A           10 VEVLQD-KLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVP----------D----VWAHGQGGLLDVVLA   74 (353)
T ss_dssp             EEEEEE-EESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCC----------C----CCCSTTCSEEEEEEC
T ss_pred             EEEEEC-CCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCc----------c----cccCCCCCceeEEEC
Confidence            445554 5889999999999984566666799999997643111111000          0    111223457899999


Q ss_pred             cC---CCeEEEEeCC--------CcEEEEeCCCC--e---EEEEeecCCC--ccccccceEEEeCCCCEEEEEeCCCccc
Q 018242          105 KT---NGDLYIADAY--------FGLLKVGPEGG--L---ATAVATQSEG--IPFRFCNSLDIDQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus       105 ~~---~g~l~v~~~~--------~~i~~~~~~~~--~---~~~~~~~~~~--~~~~~~~~l~~d~~g~~l~v~d~~~~~~  166 (359)
                      ++   ++.||++...        ..|.+++.+.+  .   .+.+....+.  ...+.+++|++++||. ||++...... 
T Consensus        75 pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~-  152 (353)
T 2g8s_A           75 PDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQ-  152 (353)
T ss_dssp             TTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTC-
T ss_pred             CCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCC-
Confidence            86   7999998542        25888876543  2   2233322221  2335678999999998 9999632110 


Q ss_pred             cccceeeeeecCCCceEEEEeCCCC-------------cEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242          167 RRNHISVILSGDKTGRLMKYDPATK-------------QVTVLLGNLSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                      ...   ........|+|+++++++.             ..+.+..+...|.+++++++...||+++...+
T Consensus       153 ~~~---~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~  219 (353)
T 2g8s_A          153 RPT---AQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPR  219 (353)
T ss_dssp             GGG---GGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSB
T ss_pred             CCc---cCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCC
Confidence            000   0001133578999999853             23345556778999999995556999988753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.47  E-value=1.1e-11  Score=107.74  Aligned_cols=196  Identities=12%  Similarity=0.022  Sum_probs=130.6

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEecC---CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcce
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVS---DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPL   99 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   99 (359)
                      +.+.+++.++...|++++++++|+ +|+++.   .+.|..+|+.+++...-.                  .+. ....+.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i------------------~l~-~~~fge   69 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIH------------------KMD-DSYFGE   69 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEE------------------ECC-TTCCEE
T ss_pred             eEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEE------------------ecC-CCcceE
Confidence            345588888777899999999886 888764   479999999988654321                  111 111234


Q ss_pred             EEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          100 GLCFNKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      |++++  +++||++++.. .+.++|.++.++..-... .     .+.+..+.+||+++|+++ +                
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~-g-----~~~g~glt~Dg~~l~vs~-g----------------  124 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTH-Q-----MKDGWGLATDGKILYGSD-G----------------  124 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEEC-C-----SSSCCEEEECSSSEEEEC-S----------------
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEEC-C-----CCCeEEEEECCCEEEEEC-C----------------
Confidence            66666  67999998765 488999998875432221 1     133445556777799995 2                


Q ss_pred             CCceEEEEeCCCCcEEEEeC------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--------
Q 018242          179 KTGRLMKYDPATKQVTVLLG------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--------  244 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--------  244 (359)
                       .+.|..+|+++.+......      ....|+++.+. ++ .+|++...++.|.++|.+..+....-.+..+        
T Consensus       125 -s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          125 -TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             -SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             -CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc
Confidence             4579999999866543221      12357888887 66 5999998899999999865432111111111        


Q ss_pred             ---CCCCCceEECCCCC-EEEEEecC
Q 018242          245 ---PGFPDNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       245 ---~~~p~~i~~d~~G~-lwv~~~~~  266 (359)
                         ...|+||++|++|+ +||+....
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~  227 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLW  227 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCC
Confidence               12578999999874 88877543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.46  E-value=4.5e-11  Score=111.61  Aligned_cols=193  Identities=14%  Similarity=0.146  Sum_probs=132.9

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...+++++++|++++++..++.|..||.++++...                    .+......+.++++++++..+|++.
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA--------------------TVDLTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE--------------------EEECSSSSEEEEEEETTTTEEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE--------------------EEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            34568999999977777888999999998764322                    1122234578999999666677776


Q ss_pred             CC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .. +.|..+|..+++.......     ...+..++++|+|+++|++.......          ....+.|+.||..+++.
T Consensus       231 ~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~----------~~~dg~i~~~d~~~~~~  295 (433)
T 3bws_A          231 WISEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKELYIAQFSASNQ----------ESGGGRLGIYSMDKEKL  295 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSEEEEEEEESCTT----------CSCCEEEEEEETTTTEE
T ss_pred             cCCCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCEEEEEECCCCcc----------ccCCCeEEEEECCCCcE
Confidence            44 4589999988875432221     23478899999998788874321000          01246799999987766


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      .........+.+++++|+++.+|++...++.|..|++...+.  ...+ .....+.+++++++|+ +|++...
T Consensus       296 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--~~~~-~~~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          296 IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--QKSI-PVFDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--EEEE-ECSSSEEEEEECTTSSEEEEEECC
T ss_pred             EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--EEEe-cCCCCCCeEEEcCCCCEEEEEecC
Confidence            544333346789999999999999999999999999864321  1112 2334477899999997 7776654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=9e-12  Score=112.58  Aligned_cols=187  Identities=16%  Similarity=0.091  Sum_probs=125.8

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..|.+++++++|+ +|++.. .+|+++|+++++++.+....                .......+..+++++ +|++|++
T Consensus        90 ~~v~~i~~~~dg~-l~v~~~-~gl~~~d~~~g~~~~~~~~~----------------~~~~~~~~~~i~~d~-~G~l~v~  150 (326)
T 2ghs_A           90 FMGSALAKISDSK-QLIASD-DGLFLRDTATGVLTLHAELE----------------SDLPGNRSNDGRMHP-SGALWIG  150 (326)
T ss_dssp             SCEEEEEEEETTE-EEEEET-TEEEEEETTTCCEEEEECSS----------------TTCTTEEEEEEEECT-TSCEEEE
T ss_pred             CcceEEEEeCCCe-EEEEEC-CCEEEEECCCCcEEEEeeCC----------------CCCCCCCCCCEEECC-CCCEEEE
Confidence            4688999999999 777664 57999999887766553110                001123477899999 8899998


Q ss_pred             eCC-------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          114 DAY-------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       114 ~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +..       .+|++++  +++++.+..     ....+++++++++|+++|+++..                 .+.|+++
T Consensus       151 ~~~~~~~~~~~~l~~~~--~g~~~~~~~-----~~~~~~~i~~s~dg~~lyv~~~~-----------------~~~I~~~  206 (326)
T 2ghs_A          151 TMGRKAETGAGSIYHVA--KGKVTKLFA-----DISIPNSICFSPDGTTGYFVDTK-----------------VNRLMRV  206 (326)
T ss_dssp             EEETTCCTTCEEEEEEE--TTEEEEEEE-----EESSEEEEEECTTSCEEEEEETT-----------------TCEEEEE
T ss_pred             eCCCcCCCCceEEEEEe--CCcEEEeeC-----CCcccCCeEEcCCCCEEEEEECC-----------------CCEEEEE
Confidence            742       3699999  466554432     22357899999999889999643                 3478888


Q ss_pred             eCC--CC-cE---EEEe---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEEC-CC
Q 018242          187 DPA--TK-QV---TVLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS-PR  256 (359)
Q Consensus       187 d~~--~~-~~---~~~~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d-~~  256 (359)
                      +.+  ++ .+   +.+.   .....|.+++++++|+ +|++...+++|.+|+.++.   ....+......|.+++++ ++
T Consensus       207 d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          207 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEEECSCSBEEEEEEESTT
T ss_pred             EcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEEECCCCCcEEEEEecCC
Confidence            864  45 31   1121   1234588999999996 8888877789999986322   112222122246788987 67


Q ss_pred             C-CEEEEEecCC
Q 018242          257 G-GFWVGIHSRR  267 (359)
Q Consensus       257 G-~lwv~~~~~~  267 (359)
                      + .||+++...+
T Consensus       283 ~~~L~vt~~~~~  294 (326)
T 2ghs_A          283 ASRLLVTSAREH  294 (326)
T ss_dssp             SCEEEEEEBCTT
T ss_pred             CCEEEEEecCCC
Confidence            5 5999887643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=2.8e-10  Score=100.28  Aligned_cols=176  Identities=9%  Similarity=-0.018  Sum_probs=116.2

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC-CcceEEEEecCCCeEEEEeCCCcEEEE
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC-GRPLGLCFNKTNGDLYIADAYFGLLKV  122 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gi~~~~~~g~l~v~~~~~~i~~~  122 (359)
                      .|++++++..++.|+.||+++++...-                    +.... ..++.+.+++ +|+++++ ..++|+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--------------------~~~~~~~~~~~~~~~p-dG~ilvs-~~~~V~~~   61 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWE--------------------YPLEKGWECNSVAATK-AGEILFS-YSKGAKMI   61 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEE--------------------EECCTTCCCCEEEECT-TSCEEEE-CBSEEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEE--------------------eCCCccCCCcCeEECC-CCCEEEe-CCCCEEEE
Confidence            456688888999999999977754321                    11111 2477889999 8899984 45679999


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe--CC-
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL--GN-  199 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~-  199 (359)
                      |++ ++........   ....++.+.+.++|+ +++++..                ..+.|+.+++++..+..+.  .. 
T Consensus        62 d~~-G~~~W~~~~~---~~~~~~~~~~~~dG~-~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~  120 (276)
T 3no2_A           62 TRD-GRELWNIAAP---AGCEMQTARILPDGN-ALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGI  120 (276)
T ss_dssp             CTT-SCEEEEEECC---TTCEEEEEEECTTSC-EEEEEES----------------TTEEEEEECTTSCEEEEEEECCSC
T ss_pred             CCC-CCEEEEEcCC---CCccccccEECCCCC-EEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCC
Confidence            995 5433222211   112456778899999 8887432                1347888998654333332  11 


Q ss_pred             ---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          200 ---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       200 ---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                         ...+.+++..++|+ ++++...+++|..||.++.    ...-...+..|.++.+.++|+++++...++
T Consensus       121 ~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~G~----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~  186 (276)
T 3no2_A          121 ERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPNGQ----LLNSVKLSGTPFSSAFLDNGDCLVACGDAH  186 (276)
T ss_dssp             SSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTTSC----EEEEEECSSCCCEEEECTTSCEEEECBTTS
T ss_pred             CcccccccCceECCCCC-EEEEecCCCEEEEECCCCC----EEEEEECCCCccceeEcCCCCEEEEeCCCC
Confidence               12466788899998 5677888899999996532    111122345688888899999999876543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.43  E-value=1.4e-11  Score=110.22  Aligned_cols=187  Identities=11%  Similarity=0.045  Sum_probs=125.7

Q ss_pred             CCCceEEEccCCCeeEEecC-C--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           34 IGPESLAFDALGEGPYTGVS-D--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ..|.+|+++++|+ +|++.. .  ..|+++++.+++++.+...                   .....+.|++..+ ++++
T Consensus        72 ~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~-------------------~~~~~~~g~~~~~-~~~~  130 (306)
T 2p4o_A           72 GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTL-------------------PDAIFLNGITPLS-DTQY  130 (306)
T ss_dssp             SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEEC-------------------TTCSCEEEEEESS-SSEE
T ss_pred             CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeC-------------------CCccccCcccccC-CCcE
Confidence            4799999999999 666542 2  3699999877766654311                   1123367888776 7889


Q ss_pred             EEEeC-CCcEEEEeCCCCeEEEE--eec----CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          111 YIADA-YFGLLKVGPEGGLATAV--ATQ----SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       111 ~v~~~-~~~i~~~~~~~~~~~~~--~~~----~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      |+++. .+.|+++|+.+++.+..  ...    ........+++|  +++|++||+++..                 .+.|
T Consensus       131 ~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-----------------~~~I  191 (306)
T 2p4o_A          131 LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-----------------KMLL  191 (306)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-----------------TTEE
T ss_pred             EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-----------------CCEE
Confidence            99986 45699999987643222  111    111234578887  7777779999764                 3478


Q ss_pred             EEEeCCC-CcE---EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee--cCC-CCCCceEEC--
Q 018242          184 MKYDPAT-KQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--QLP-GFPDNIKRS--  254 (359)
Q Consensus       184 ~~~d~~~-~~~---~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~-~~p~~i~~d--  254 (359)
                      ++++.++ +++   +.+. ....|.+++++++|+ +|+++..+++|.+|+.++    ......  ..+ ..|.+++++  
T Consensus       192 ~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G----~~~~~~~~~~~~~~p~~~a~~g~  265 (306)
T 2p4o_A          192 LRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR----STTIIAQAEQGVIGSTAVAFGQT  265 (306)
T ss_dssp             EEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC----CEEEEECGGGTCTTEEEEEECCS
T ss_pred             EEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC----CEEEEeecccccCCceEEEEecc
Confidence            8888764 322   2222 235799999999997 899999999999998542    222221  223 458899998  


Q ss_pred             -CCC-CEEEEEecC
Q 018242          255 -PRG-GFWVGIHSR  266 (359)
Q Consensus       255 -~~G-~lwv~~~~~  266 (359)
                       +++ .|||++..+
T Consensus       266 ~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          266 EGDCTAIYVVTNGG  279 (306)
T ss_dssp             TTTTTEEEEEECTT
T ss_pred             cCCCCEEEEECCCC
Confidence             675 699988753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.43  E-value=2.3e-10  Score=100.87  Aligned_cols=227  Identities=15%  Similarity=0.118  Sum_probs=145.4

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      +.+-++..+....++++.++++|+ +++ +.+++|+.+|+++.....+.                   . ........+.
T Consensus        26 ~~~w~~~~~~~~~~~~~~~~pdG~-ilv-s~~~~V~~~d~~G~~~W~~~-------------------~-~~~~~~~~~~   83 (276)
T 3no2_A           26 EIVWEYPLEKGWECNSVAATKAGE-ILF-SYSKGAKMITRDGRELWNIA-------------------A-PAGCEMQTAR   83 (276)
T ss_dssp             EEEEEEECCTTCCCCEEEECTTSC-EEE-ECBSEEEEECTTSCEEEEEE-------------------C-CTTCEEEEEE
T ss_pred             eEEEEeCCCccCCCcCeEECCCCC-EEE-eCCCCEEEECCCCCEEEEEc-------------------C-CCCccccccE
Confidence            334455555435799999999999 555 44678999999543333332                   0 0012345667


Q ss_pred             EecCCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          103 FNKTNGDLYIADAY--FGLLKVGPEGGLATAVATQSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       103 ~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      +.+ +|++++++..  ..++.+++++..+..+..... ..+...+..+.++++|+ +++++..                 
T Consensus        84 ~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~-----------------  144 (276)
T 3no2_A           84 ILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFA-----------------  144 (276)
T ss_dssp             ECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETT-----------------
T ss_pred             ECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecC-----------------
Confidence            777 8888888654  358888987665444321111 12334567788999999 8887543                 


Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CC----CCCCceEE
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LP----GFPDNIKR  253 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~----~~p~~i~~  253 (359)
                      .+.|+.+|++ |+..........|.+....++++ ++++...+++|..++.+..+.-  -.+..  .+    ..|.++.+
T Consensus       145 ~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~--w~~~~~~~~~~~l~~~~~~~~  220 (276)
T 3no2_A          145 TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIV--RRVNANDIEGVQLFFVAQLFP  220 (276)
T ss_dssp             TTEEEEECTT-SCEEEEEECSSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEE--EEEEGGGSBSCCCSEEEEEEE
T ss_pred             CCEEEEECCC-CCEEEEEECCCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEE--EEecCCCCCCccccccccceE
Confidence            4689999998 66655443335678888888887 6777788889999987633221  11211  22    13678899


Q ss_pred             CCCCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEc
Q 018242          254 SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE  323 (359)
Q Consensus       254 d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  323 (359)
                      .++|+++++++.++..       +..                     .... ..++.++++|+++..|..
T Consensus       221 ~~~G~i~v~~~~g~~~-------~~~---------------------~~~~-~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          221 LQNGGLYICNWQGHDR-------EAG---------------------KGKH-PQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             CTTSCEEEEEECTTCT-------TGG---------------------GSCC-CSEEEECTTSBEEEEECC
T ss_pred             cCCCCEEEEeccCccc-------ccc---------------------ccCC-ceEEEECCCCCEEEEecC
Confidence            9999999998754310       000                     0011 457888999999988864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.41  E-value=1.1e-10  Score=100.86  Aligned_cols=196  Identities=10%  Similarity=0.115  Sum_probs=127.3

Q ss_pred             eeCC-CCCCceEEEccCCCeeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           29 QIEG-AIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        29 ~~~~-~~~p~~i~~~~~G~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ++++ ...+.++++++++..||+ ...++.|+.+|+.+.....+.                   + .....+.||++.. 
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~-------------------l-~g~~D~EGIa~~~-   79 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP-------------------L-DFVKDLETIEYIG-   79 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE-------------------C-SSCSSEEEEEECS-
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe-------------------c-CCCCChHHeEEeC-
Confidence            3444 367899999998766885 666789999999844233321                   1 1224578999997 


Q ss_pred             CCeEEEEeCC-CcEEEEeCCCCe-EEEE--ee-cC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          107 NGDLYIADAY-FGLLKVGPEGGL-ATAV--AT-QS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       107 ~g~l~v~~~~-~~i~~~~~~~~~-~~~~--~~-~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ++.+|+++.. ++++.++..... ...+  .. .. .........+|++|+++++||++.-                ...
T Consensus        80 ~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E----------------~~p  143 (255)
T 3qqz_A           80 DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE----------------KNP  143 (255)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE----------------SSS
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC----------------cCC
Confidence            8888888654 467776543322 1111  11 11 1122345689999999977999831                112


Q ss_pred             ceEEEEe--CCCCcEEEEeC-------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC------
Q 018242          181 GRLMKYD--PATKQVTVLLG-------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP------  245 (359)
Q Consensus       181 g~v~~~d--~~~~~~~~~~~-------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~------  245 (359)
                      ..|+.++  +.+..+.....       ....+.+++++|..+.+|+....++.|..+|.++.    ...+..+.      
T Consensus       144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~----~~~~~~L~~g~~~l  219 (255)
T 3qqz_A          144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE----VIGEMSLTKGSRGL  219 (255)
T ss_dssp             EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECSTTGGGC
T ss_pred             ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC----EEEEEEcCCccCCc
Confidence            3688887  22222332211       23457899999998889999999999999987654    12222211      


Q ss_pred             ----CCCCceEECCCCCEEEEEec
Q 018242          246 ----GFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       246 ----~~p~~i~~d~~G~lwv~~~~  265 (359)
                          ..|.||++|++|+|||++-+
T Consensus       220 ~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          220 SHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             SSCCCSEEEEEECTTCCEEEEETT
T ss_pred             ccccCCCCeeEECCCCCEEEEcCC
Confidence                24789999999999999765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.40  E-value=2.2e-10  Score=110.94  Aligned_cols=199  Identities=11%  Similarity=0.056  Sum_probs=130.8

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcC--CcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD--QRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      +.++..+  ..|+++.+++||+.+|++..++.|..+|..  +.+...                    .+ .....|.+++
T Consensus       190 ~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--------------------~i-~~G~~P~~ia  246 (567)
T 1qks_A          190 KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--------------------EI-KIGSEARSIE  246 (567)
T ss_dssp             EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--------------------EE-ECCSEEEEEE
T ss_pred             EEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--------------------EE-ecCCCCceeE
Confidence            3356665  489999999999999999888999999985  442211                    11 2234689999


Q ss_pred             Ee----cCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecC----CC---ccccccceEEEeCCCCEEEEEeCCCccccccc
Q 018242          103 FN----KTNGDLYIADAY-FGLLKVGPEGGLATAVATQS----EG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH  170 (359)
Q Consensus       103 ~~----~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~----~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~  170 (359)
                      ++    +++..+|+++.. +.+..+|..+.+........    ..   .+...+..+..++++..++++.          
T Consensus       247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----------  316 (567)
T 1qks_A          247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------  316 (567)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------
T ss_pred             EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----------
Confidence            99    567789998765 45888998887654332211    10   0112445778888877445442          


Q ss_pred             eeeeeecCCCceEEEEeCCCCcEEEE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-CCC
Q 018242          171 ISVILSGDKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGF  247 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~  247 (359)
                             ...|.|+.+|..+.....+  ......+.++.|++|++++|+++..++.|.++|.+..+.   ...... ...
T Consensus       317 -------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl---~~~i~vgg~~  386 (567)
T 1qks_A          317 -------KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL---VAIEDTGGQT  386 (567)
T ss_dssp             -------TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE---EEEEECSSSS
T ss_pred             -------cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE---EEEEeccCcC
Confidence                   2356899998765432111  223456788999999999999999999999999865432   111223 223


Q ss_pred             C---CceE-ECCC-CCEEEEEecC
Q 018242          248 P---DNIK-RSPR-GGFWVGIHSR  266 (359)
Q Consensus       248 p---~~i~-~d~~-G~lwv~~~~~  266 (359)
                      |   .+.. ++++ |.+|++...+
T Consensus       387 Phpg~g~~~~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          387 PHPGRGANFVHPTFGPVWATSHMG  410 (567)
T ss_dssp             BCCTTCEEEEETTTEEEEEEEBSS
T ss_pred             CCCccceeeECCCCCcEEEeCCCC
Confidence            3   3554 4776 6799876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.40  E-value=1.2e-09  Score=105.74  Aligned_cols=264  Identities=13%  Similarity=0.126  Sum_probs=159.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....++++.|+|+.+.++..++.|..||..+.....+                     .........+++++++..+..+
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~---------------------~~~~~~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL---------------------TGHSSSVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE---------------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE---------------------eCCCCCEEEEEECCCCCEEEEE
Confidence            3456899999999888888889999999877644332                     2223446789999944444445


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.+..++..+.....+..     ....+..++++|+|++|..+                  ...+.|..||.++...
T Consensus       363 ~~dg~v~~~~~~~~~~~~~~~-----~~~~v~~~~~s~dg~~l~~~------------------~~d~~v~~~~~~~~~~  419 (577)
T 2ymu_A          363 SDDKTVKLWNRNGQLLQTLTG-----HSSSVRGVAFSPDGQTIASA------------------SDDKTVKLWNRNGQLL  419 (577)
T ss_dssp             ETTSEEEEEETTCCEEEEEEC-----CSSCEEEEEECTTSSCEEEE------------------ETTSEEEEECTTCCEE
T ss_pred             eCCCEEEEEcCCCCEEEEecC-----CCCCeEEEEECCCCCEEEEE------------------eCCCEEEEEeCCCCEE
Confidence            544457778876554443322     12356789999999944333                  2245788888765444


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccc
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKL  273 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~  273 (359)
                      ..+.........++++||++. +++...++.|..|+....   ....+.........++++++|++.++....+.     
T Consensus       420 ~~~~~~~~~v~~~~~s~d~~~-l~~~~~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-----  490 (577)
T 2ymu_A          420 QTLTGHSSSVWGVAFSPDDQT-IASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-----  490 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSCEEEEEETTSE-----
T ss_pred             EEecCCCCCeEEEEECCCCCE-EEEEcCCCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-----
Confidence            445444455678999999985 455567789999996432   12222222333466899999998876665554     


Q ss_pred             cccCCccceeeecCCccceeeeeecccccCc-------ceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEEe
Q 018242          274 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-------GGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIG  345 (359)
Q Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig  345 (359)
                      +..++.+++.+..+......+..+.+..+..       ...+..+|.+++.+..+..+.+    .+..+... +|+..++
T Consensus       491 i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             EEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS----CEEEEEECTTSSCEEE
T ss_pred             EEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCCCEEEE
Confidence            6666777877776655444555554443222       0233344555555555543322    33444433 5554444


Q ss_pred             cCCCCeEEE
Q 018242          346 SVNMPYAGL  354 (359)
Q Consensus       346 ~~~~~~l~~  354 (359)
                      .-.+..|.+
T Consensus       567 ~~~D~~i~~  575 (577)
T 2ymu_A          567 ASSDKTVKL  575 (577)
T ss_dssp             EETTSCEEE
T ss_pred             EeCCCEEEE
Confidence            333444443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.39  E-value=1.2e-10  Score=106.27  Aligned_cols=207  Identities=15%  Similarity=0.132  Sum_probs=122.6

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ...|..+++  +|+.+|++. .++.+..|+..... .........+.+.  +|.     ........+++++++|++..+
T Consensus        99 ~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~--~~~-----~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           99 GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS--GPD-----KERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC--CSC-----TTTCSSCCEEEEEECTTSSEE
T ss_pred             CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC--CCC-----ccccCCCcceEEEECCCCCEE
Confidence            357888888  777677765 56789999976431 1111000000000  000     000111235789999944558


Q ss_pred             EEEeCCC-cEEEEeCC--CC----e-EEEE---eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          111 YIADAYF-GLLKVGPE--GG----L-ATAV---ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       111 ~v~~~~~-~i~~~~~~--~~----~-~~~~---~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      |+++... .+..++.+  ++    + +...   .. ........|.+++++|+|+++|+++..                 
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~-----------------  231 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA-FKVAPGSGPRHLIFNSDGKFAYLINEI-----------------  231 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETT-----------------
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccc-eecCCCCCCeEEEEcCCCCEEEEEcCC-----------------
Confidence            8887643 46666543  43    2 2111   00 001123467889999999988888532                 


Q ss_pred             CceEEEEeCCCCcEEEEe------CCCCCCceEEEccCCCEEEEEecC-CCEEEEEEcCCCCCcceeEeec--CCCCCCc
Q 018242          180 TGRLMKYDPATKQVTVLL------GNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ--LPGFPDN  250 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~------~~~~~p~gia~~~d~~~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~  250 (359)
                      .+.|..|+.++++++.+.      .....|.+++++|||++||+++.. .+.|..|+++.. .+..+....  ....|.+
T Consensus       232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~g~~~~~  310 (361)
T 3scy_A          232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGYQLTGIHPRN  310 (361)
T ss_dssp             TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEEEECSSCCCE
T ss_pred             CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeEecCCCCCce
Confidence            346777776666654332      123446799999999999999988 789999998632 112222221  2446889


Q ss_pred             eEECCCCC-EEEEEecCC
Q 018242          251 IKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       251 i~~d~~G~-lwv~~~~~~  267 (359)
                      ++++++|+ ||++....+
T Consensus       311 ~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          311 FIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEECTTSCEEEEEETTTT
T ss_pred             EEECCCCCEEEEEECCCC
Confidence            99999997 777765443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.37  E-value=6.7e-11  Score=106.75  Aligned_cols=231  Identities=13%  Similarity=0.073  Sum_probs=126.5

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc----CCcceE
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI----CGRPLG  100 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~g  100 (359)
                      .++..+....|.+++++++|+.+|++ ..++.|+.||+.+++.....                  .....    ...|.+
T Consensus        35 ~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------------------~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           35 KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------------------NLSSVPGEVGRSMYS   96 (349)
T ss_dssp             EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------------------ESCCSTTEEEECSSC
T ss_pred             EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------------------Ecccccccccccccc
Confidence            35555543479999999999867765 45689999999877543211                  11000    123678


Q ss_pred             EEEecCCCeEEEEeCC------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCC-cccc
Q 018242          101 LCFNKTNGDLYIADAY------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSS-QFQR  167 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~-~~~~  167 (359)
                      +++++++..++++...            +.|..+|.++++.........  ....+..++++++|+ +|++...- .|+.
T Consensus        97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-l~~~~~~i~~~d~  173 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGS-LYVAGPDIYKMDV  173 (349)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSC-EEEESSSEEEECT
T ss_pred             eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCc-EEEccCcEEEEeC
Confidence            9999966678877633            568889987644211111011  112467888999999 99863210 0000


Q ss_pred             cc-ceeeeeecC---------------------------------------------CCceEEEEeCCCCcEEEEe--CC
Q 018242          168 RN-HISVILSGD---------------------------------------------KTGRLMKYDPATKQVTVLL--GN  199 (359)
Q Consensus       168 ~~-~~~~~~~~~---------------------------------------------~~g~v~~~d~~~~~~~~~~--~~  199 (359)
                      .. .........                                             ....++.++..++++..+.  ..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (349)
T 1jmx_B          174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL  253 (349)
T ss_dssp             TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence            00 000000000                                             0001112333333332221  11


Q ss_pred             CCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccC
Q 018242          200 LSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSF  277 (359)
Q Consensus       200 ~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~  277 (359)
                      ...+.+++++| |++.+|++   .+.|++||+...+   .......+..|.+++++++|+ ||++. ..+.     +.++
T Consensus       254 ~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~-----v~v~  321 (349)
T 1jmx_B          254 TELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRK---LIKAANLDHTYYCVAFDKKGDKLYLGG-TFND-----LAVF  321 (349)
T ss_dssp             SSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTE---EEEEEECSSCCCEEEECSSSSCEEEES-BSSE-----EEEE
T ss_pred             CCcceeeEecCCCCCEEEEE---cCeEEEEECccCe---EEEEEcCCCCccceEECCCCCEEEEec-CCCe-----EEEE
Confidence            22456788889 99988888   6799999976432   111222344578899999985 77753 2222     3444


Q ss_pred             C-ccceeeecCCc
Q 018242          278 P-WIGNVLIKLPI  289 (359)
Q Consensus       278 ~-~~g~~~~~~~~  289 (359)
                      + ..++.+..++.
T Consensus       322 d~~~~~~~~~~~~  334 (349)
T 1jmx_B          322 NPDTLEKVKNIKL  334 (349)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             eccccceeeeeec
Confidence            3 24555555443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.36  E-value=2.2e-09  Score=103.94  Aligned_cols=267  Identities=13%  Similarity=0.128  Sum_probs=159.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....++++.|+|+.+.++..++.|..||..+.....+                     ........++++++++..+..+
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~---------------------~~h~~~v~~~~~~~~~~~l~t~  321 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL---------------------TGHSSSVWGVAFSPDGQTIASA  321 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE---------------------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEE---------------------ecCCCCeEEEEECCCCCEEEEE
Confidence            4556899999999888888889999999765422222                     2223446789999944444444


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..++..+.....+..     ....+..++++|+|+++..+                  ...+.|..++.++..+
T Consensus       322 ~~d~~i~~w~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~------------------~~dg~v~~~~~~~~~~  378 (577)
T 2ymu_A          322 SDDKTVKLWNRNGQHLQTLTG-----HSSSVWGVAFSPDGQTIASA------------------SDDKTVKLWNRNGQLL  378 (577)
T ss_dssp             ETTSCEEEEETTSCEEEEECC-----CSSCEEEEEECTTSSEEEEE------------------ETTSEEEEEETTCCEE
T ss_pred             eCCCeEEEEeCCCCeeEEEeC-----CCCCEEEEEECCCCCEEEEE------------------eCCCEEEEEcCCCCEE
Confidence            544458888988776554322     12356789999999944443                  2245788888765555


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccc
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKL  273 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~  273 (359)
                      ..+.........++++||++.+ ++...++.|..|+....   ....+.........+++++++++.++....+.     
T Consensus       379 ~~~~~~~~~v~~~~~s~dg~~l-~~~~~d~~v~~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-----  449 (577)
T 2ymu_A          379 QTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-----  449 (577)
T ss_dssp             EEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTTCC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSE-----
T ss_pred             EEecCCCCCeEEEEECCCCCEE-EEEeCCCEEEEEeCCCC---EEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-----
Confidence            5554445567899999999855 44556789999985432   12222222333456899999987776655553     


Q ss_pred             cccCCccceeeecCCccceeeeeecccccCc-------ceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEEe
Q 018242          274 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN-------GGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIG  345 (359)
Q Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig  345 (359)
                      +..++.+++.+..+......+..+.+..+..       ...+..++.+++.+..+..+.    ..+..+... +|++.++
T Consensus       450 v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~----~~v~~l~~s~dg~~l~s  525 (577)
T 2ymu_A          450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS----SSVRGVAFSPDGQTIAS  525 (577)
T ss_dssp             EEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCS----SCEEEEEECTTSSCEEE
T ss_pred             EEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCC----CCEEEEEEcCCCCEEEE
Confidence            5556666776665544434444444432221       012333344555555544322    233444433 4554444


Q ss_pred             cCCCCeEEEEcC
Q 018242          346 SVNMPYAGLYNY  357 (359)
Q Consensus       346 ~~~~~~l~~~~~  357 (359)
                      .-.+..|.+.++
T Consensus       526 ~~~dg~v~lwd~  537 (577)
T 2ymu_A          526 ASDDKTVKLWNR  537 (577)
T ss_dssp             EETTSEEEEECT
T ss_pred             EECcCEEEEEeC
Confidence            444566766654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.36  E-value=8.9e-11  Score=107.58  Aligned_cols=198  Identities=16%  Similarity=0.120  Sum_probs=122.4

Q ss_pred             CCceEEEccCCCe--eEEec-------------CCCEEEEEEcCC-cceEE-EeecCCCCCCCCCCccccccccc-ccCC
Q 018242           35 GPESLAFDALGEG--PYTGV-------------SDGRIIKWHQDQ-RRWLH-FARTSPNRDGCEGAYEYDHAAKE-HICG   96 (359)
Q Consensus        35 ~p~~i~~~~~G~~--l~~~~-------------~~~~i~~~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~   96 (359)
                      .|.+++++|+|+.  ++++.             .++.+..|+.+. ++... +.                  ... ....
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~------------------~~~~~~~~  145 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ------------------NYEYQENT  145 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE------------------EEECCTTC
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe------------------eEEeCCCC
Confidence            4888999999994  34443             467788888753 33221 11                  000 1224


Q ss_pred             cceEEEEecCCCeEEEEeCC-CcEEEEeCC-CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           97 RPLGLCFNKTNGDLYIADAY-FGLLKVGPE-GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      .++++++++++..+|+++.. +.|..++.+ +++.+.+...........|.+++++|+|+++|+++..            
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~------------  213 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA------------  213 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT------------
T ss_pred             cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC------------
Confidence            58899999955568888754 468888887 6765433221000012468899999999989988432            


Q ss_pred             eecCCCceEEEEeCCCCcEEE----Ee---CCC---C-------CCceEE-EccCCCEEEEEecCCC-----EEEEEEcC
Q 018242          175 LSGDKTGRLMKYDPATKQVTV----LL---GNL---S-------FPNGVA-LSEDGNYILLAETTSC-----RILRYWLK  231 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~----~~---~~~---~-------~p~gia-~~~d~~~l~v~~~~~~-----~i~~~~~~  231 (359)
                         ...-.++.++.+++++..    +.   .+.   .       .|.+++ ++|||++||+++...+     .|.+|+++
T Consensus       214 ---~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          214 ---GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             ---TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ---CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence               111235556665565431    21   111   1       477899 9999999999987665     89999986


Q ss_pred             CCCCcceeE---eec-CCCCCCceEECC---CCC-EEEEEecCC
Q 018242          232 TSKAGTIEI---VAQ-LPGFPDNIKRSP---RGG-FWVGIHSRR  267 (359)
Q Consensus       232 ~~~~~~~~~---~~~-~~~~p~~i~~d~---~G~-lwv~~~~~~  267 (359)
                      ..  +....   ... ....|.++++++   +|+ |+++...++
T Consensus       291 ~~--g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~  332 (365)
T 1jof_A          291 DC--GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG  332 (365)
T ss_dssp             TT--SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC
T ss_pred             CC--CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC
Confidence            32  22221   122 334588899998   786 666665444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.33  E-value=1.2e-10  Score=108.28  Aligned_cols=237  Identities=11%  Similarity=-0.017  Sum_probs=139.7

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccc
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEH   93 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (359)
                      +-+++.+.  .| +++++|||+.+|++..          .+.|..+|+.+.+... +......             . ..
T Consensus       112 v~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~-------------r-~~  174 (426)
T 3c75_H          112 LGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP-------------R-FL  174 (426)
T ss_dssp             EEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-------------C-CC
T ss_pred             EEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc-------------c-cc
Confidence            44777774  78 9999999999999873          4679999998875432 2110000             0 00


Q ss_pred             cCCcceEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccce----EEEeCCCCEEEEEeCCCc---
Q 018242           94 ICGRPLGLCFNKTNGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNS----LDIDQSTGIIYFTDSSSQ---  164 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~d~~g~~l~v~d~~~~---  164 (359)
                      ....|++++++++++.+|+++..  +.|..+|..++++...... .+.....|.+    +...++|+.+|++.....   
T Consensus       175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~  253 (426)
T 3c75_H          175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKV  253 (426)
T ss_dssp             BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred             cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEE
Confidence            12458999999978889999753  4699999999886533221 1111112222    677788886666642110   


Q ss_pred             -----ccccc-c----------eeeeeecCCCceEEEEeCCCCcEEEEeC------C----CCCCce---EEEccCCCEE
Q 018242          165 -----FQRRN-H----------ISVILSGDKTGRLMKYDPATKQVTVLLG------N----LSFPNG---VALSEDGNYI  215 (359)
Q Consensus       165 -----~~~~~-~----------~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~----~~~p~g---ia~~~d~~~l  215 (359)
                           +.... .          ...+......+.|+.+|..++.......      .    ...|.+   +++++|++++
T Consensus       254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rl  333 (426)
T 3c75_H          254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRI  333 (426)
T ss_dssp             EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEE
T ss_pred             EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEE
Confidence                 00000 0          0000001123567777775544332210      0    112444   8999999999


Q ss_pred             EEEecC---------CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe-cCCCccccccccC-Ccccee
Q 018242          216 LLAETT---------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH-SRRKGISKLVLSF-PWIGNV  283 (359)
Q Consensus       216 ~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~-~~~~~~~~~~~~~-~~~g~~  283 (359)
                      |+++..         .+.|.++|....+..   ....++..|++|+++++|+ +|+.++ .++.     +.++ ..++++
T Consensus       334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~vg~~P~gia~spDg~~~lyv~n~~s~~-----VsVID~~t~kv  405 (426)
T 3c75_H          334 YLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIELGHEIDSINVSQDAEPLLYALSAGTQT-----LHIYDAATGEE  405 (426)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEEEECEEEECCSSSCEEEEEETTTTE-----EEEEETTTCCE
T ss_pred             EEEecccccccccCCCCEEEEEECCCCeEE---EEEECCCCcCeEEEccCCCEEEEEEcCCCCe-----EEEEECCCCCE
Confidence            999742         357999997654221   1112344699999999998 666555 4443     3333 456777


Q ss_pred             eecC
Q 018242          284 LIKL  287 (359)
Q Consensus       284 ~~~~  287 (359)
                      ++++
T Consensus       406 v~tI  409 (426)
T 3c75_H          406 LRSV  409 (426)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.33  E-value=1.6e-10  Score=105.59  Aligned_cols=197  Identities=16%  Similarity=0.130  Sum_probs=122.0

Q ss_pred             CCCCCceEEEccC---CCeeEEecCC--------CEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccc-ccc-ccCC
Q 018242           32 GAIGPESLAFDAL---GEGPYTGVSD--------GRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHA-AKE-HICG   96 (359)
Q Consensus        32 ~~~~p~~i~~~~~---G~~l~~~~~~--------~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~   96 (359)
                      +..+|.+|+++|+   +..+|++...        .+|.+++.++.  ......               .++ .+. ...+
T Consensus        71 g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~---------------~l~~~~~~~~~h  135 (354)
T 3a9g_A           71 GEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVK---------------TLIDGIPGAYIH  135 (354)
T ss_dssp             TTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEE---------------EEEEEEECCSSC
T ss_pred             CCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccE---------------EEEEcCCCCCCc
Confidence            3468999999997   4447776542        68999987654  111100               000 011 1224


Q ss_pred             cceEEEEecCCCeEEEEeCC--------------CcEEEEeCCCC--------eEEEEeecCCCccccccceEEEeC-CC
Q 018242           97 RPLGLCFNKTNGDLYIADAY--------------FGLLKVGPEGG--------LATAVATQSEGIPFRFCNSLDIDQ-ST  153 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~--------------~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~d~-~g  153 (359)
                      .+.+|++++ +|+||++...              +.|+|+++++.        ..+.+..     .+..|++|++|+ +|
T Consensus       136 ~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-----G~rnp~Gla~d~~~g  209 (354)
T 3a9g_A          136 NGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-----GHRNPQGIDWHRASG  209 (354)
T ss_dssp             CCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-----CCSCCCEEEECTTTC
T ss_pred             CCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-----ccCCcceEEEeCCCC
Confidence            567899999 8899998521              25999998764        1122211     345799999999 78


Q ss_pred             CEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--------------CcEEE--Ee-CCCCCCceEEEc-------
Q 018242          154 GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--------------KQVTV--LL-GNLSFPNGVALS-------  209 (359)
Q Consensus       154 ~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--------------~~~~~--~~-~~~~~p~gia~~-------  209 (359)
                      + ||+++.+...              ...|.++.+..              +....  .. .....|.|+++.       
T Consensus       210 ~-l~v~d~g~~~--------------~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~  274 (354)
T 3a9g_A          210 V-MVATEHGPVG--------------HDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG  274 (354)
T ss_dssp             C-EEEEECCSSS--------------CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG
T ss_pred             C-EEEEecCCCC--------------CcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc
Confidence            8 9999876431              01222222210              00001  11 223468899994       


Q ss_pred             cCCCEEEEEecCCCEEEEEEcCCC-CCcceeEeec-CCCCCCceEECCCCCEEEEEec
Q 018242          210 EDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       210 ~d~~~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      .+| .+|+++...++|++++++.. .....+.+.. ..+.|.++++++||.||+++..
T Consensus       275 ~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~~  331 (354)
T 3a9g_A          275 LRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTSN  331 (354)
T ss_dssp             GTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEECT
T ss_pred             cCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEeC
Confidence            455 58999999999999998753 2222233332 3456899999999999999863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.33  E-value=4.8e-10  Score=102.46  Aligned_cols=278  Identities=11%  Similarity=-0.047  Sum_probs=149.1

Q ss_pred             ceEEEccCCCeeEEecC------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           37 ESLAFDALGEGPYTGVS------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      .+++|+|||++|.++..      ++.|+.|+..+++..                ................+++++ ++.+
T Consensus        46 ~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~----------------~~~~~~~~~~~~~V~~~~~s~-d~~~  108 (357)
T 4g56_B           46 GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN----------------ESLCTAGVQTEAGVTDVAWVS-EKGI  108 (357)
T ss_dssp             EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C----------------GGGCSEEEECSSCEEEEEEET-TTEE
T ss_pred             EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc----------------eeEecccCCCCCCEEEEEEcC-CCCE
Confidence            58999999997777665      567888876554100                000001111223356889999 7888


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          111 YIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +++...+.|..+|..+++...............+..++++|+|+ ..++-                 ...+.|..||..+
T Consensus       109 l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sg-----------------s~dg~v~iwd~~~  170 (357)
T 4g56_B          109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSG-----------------GKDFSVKVWDLSQ  170 (357)
T ss_dssp             EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEE-----------------ETTSCEEEEETTT
T ss_pred             EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEE-----------------eCCCeEEEEECCC
Confidence            88876666888888766532111100001123577899999999 44441                 2356788999987


Q ss_pred             CcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCC-CEEEEEecCCC
Q 018242          191 KQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSRRK  268 (359)
Q Consensus       191 ~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~~~~  268 (359)
                      ++..... ........++++++++.++++...++.|..||+...+......+......+..+++.+++ +++++....+.
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~  250 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN  250 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc
Confidence            7665433 334456789999988767788888899999997654321111111122334568888764 56654444443


Q ss_pred             ccccccccCC-ccceeeecCCccceeeeeecccccCc--------ceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-
Q 018242          269 GISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN--------GGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-  338 (359)
Q Consensus       269 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-  338 (359)
                           +..++ ..++.+..+......+..+.+.....        ...+..+|.+...+.....+    ...+..+... 
T Consensus       251 -----i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H----~~~V~~vafsP  321 (357)
T 4g56_B          251 -----VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSH----RDFVTGVAWSP  321 (357)
T ss_dssp             -----EEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCC----SSCEEEEEECS
T ss_pred             -----eeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCC----CCCEEEEEEeC
Confidence                 44444 35555555554444444444432221        01233334332222221111    1244555542 


Q ss_pred             -CCEEEEecCCCCeEEEEcCC
Q 018242          339 -DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       339 -~g~l~ig~~~~~~l~~~~~~  358 (359)
                       +++++++.-.+..|.+.+++
T Consensus       322 ~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          322 LDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             SSTTEEEEEETTSCEEEEECC
T ss_pred             CCCCEEEEEcCCCeEEEEECC
Confidence             45555544346678887765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.33  E-value=4.4e-10  Score=100.85  Aligned_cols=186  Identities=12%  Similarity=0.080  Sum_probs=119.0

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      +|+ +|+++.+++|+++|++ ++......                    ........+++++ ++++|+++..++|++++
T Consensus       107 ~~~-l~v~t~~~~l~~~d~~-g~~~~~~~--------------------~~~~~~~~~~~~~-~g~l~vgt~~~~l~~~d  163 (330)
T 3hxj_A          107 EDI-LYVTSMDGHLYAINTD-GTEKWRFK--------------------TKKAIYATPIVSE-DGTIYVGSNDNYLYAIN  163 (330)
T ss_dssp             TTE-EEEECTTSEEEEECTT-SCEEEEEE--------------------CSSCCCSCCEECT-TSCEEEECTTSEEEEEC
T ss_pred             CCE-EEEEecCCEEEEEcCC-CCEEEEEc--------------------CCCceeeeeEEcC-CCEEEEEcCCCEEEEEC
Confidence            565 8888888889999987 43222110                    0111123456676 88999998767899999


Q ss_pred             CCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-EeCCCCC
Q 018242          124 PEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-LLGNLSF  202 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~  202 (359)
                      ++ ++.......    +......++++++|+ +|++.                    ++|+++|++ ++... .......
T Consensus       164 ~~-g~~~~~~~~----~~~~~~~~~~d~~g~-l~v~t--------------------~~l~~~d~~-g~~~~~~~~~~~~  216 (330)
T 3hxj_A          164 PD-GTEKWRFKT----NDAITSAASIGKDGT-IYFGS--------------------DKVYAINPD-GTEKWNFYAGYWT  216 (330)
T ss_dssp             TT-SCEEEEEEC----SSCCCSCCEECTTCC-EEEES--------------------SSEEEECTT-SCEEEEECCSSCC
T ss_pred             CC-CCEeEEEec----CCCceeeeEEcCCCE-EEEEe--------------------CEEEEECCC-CcEEEEEccCCcc
Confidence            98 554322221    123456788999999 99992                    579999954 44433 2223344


Q ss_pred             CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCccce
Q 018242          203 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGN  282 (359)
Q Consensus       203 p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~  282 (359)
                      ...++++++++ +|++. .++.|++++.++.   ....+......+..+.+|++|+||+++..++      +.+++++|+
T Consensus       217 ~~~~~~~~~g~-l~v~t-~~~gl~~~~~~g~---~~~~~~~~~~~~~~~~~~~~g~l~v~t~~gg------l~~~d~~g~  285 (330)
T 3hxj_A          217 VTRPAISEDGT-IYVTS-LDGHLYAINPDGT---EKWRFKTGKRIESSPVIGNTDTIYFGSYDGH------LYAINPDGT  285 (330)
T ss_dssp             CSCCEECTTSC-EEEEE-TTTEEEEECTTSC---EEEEEECSSCCCSCCEECTTSCEEEECTTCE------EEEECTTSC
T ss_pred             eeceEECCCCe-EEEEc-CCCeEEEECCCCC---EeEEeeCCCCccccceEcCCCeEEEecCCCC------EEEECCCCc
Confidence            67788888875 67664 4678999964322   1112222233456788898999999997655      677777787


Q ss_pred             eeecCCcc
Q 018242          283 VLIKLPID  290 (359)
Q Consensus       283 ~~~~~~~~  290 (359)
                      .+.....+
T Consensus       286 ~~~~~~~~  293 (330)
T 3hxj_A          286 EKWNFETG  293 (330)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEcC
Confidence            76655443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.33  E-value=5.3e-10  Score=104.03  Aligned_cols=114  Identities=11%  Similarity=-0.097  Sum_probs=78.0

Q ss_pred             cCCCeeEEecCC-----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC--
Q 018242           43 ALGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA--  115 (359)
Q Consensus        43 ~~G~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~--  115 (359)
                      ++++.+|++...     +.|..+|+.+.+...                    . ......| +++++++++.+|+++.  
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~--------------------~-I~vG~~P-gia~SpDgk~lyVan~~~  139 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILG--------------------M-TDGGFLP-HPVAAEDGSFFAQASTVF  139 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEE--------------------E-EEECSSC-EEEECTTSSCEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEE--------------------E-EECCCCC-ceEECCCCCEEEEEeccc
Confidence            577778887663     589999999875432                    1 1233458 9999998888999974  


Q ss_pred             --------CCcEEEEeCCCCeEEEEeecC-CC--ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          116 --------YFGLLKVGPEGGLATAVATQS-EG--IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       116 --------~~~i~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                              .+.|..+|..++++....... ..  .....|+++++++||+++|+++..                ..+.|.
T Consensus       140 ~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~Vs  203 (426)
T 3c75_H          140 ERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVG  203 (426)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEE
T ss_pred             cccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEE
Confidence                    235999999988764322211 00  012468899999999999999532                124577


Q ss_pred             EEeCCCCcEE
Q 018242          185 KYDPATKQVT  194 (359)
Q Consensus       185 ~~d~~~~~~~  194 (359)
                      .+|..++++.
T Consensus       204 VID~~t~kvv  213 (426)
T 3c75_H          204 VVDLEGKTFD  213 (426)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            7777766543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.33  E-value=5.1e-11  Score=108.85  Aligned_cols=200  Identities=15%  Similarity=0.140  Sum_probs=121.6

Q ss_pred             CCCCceEEEccC---CCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCccccccc-cc---ccCCcce
Q 018242           33 AIGPESLAFDAL---GEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAA-KE---HICGRPL   99 (359)
Q Consensus        33 ~~~p~~i~~~~~---G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~p~   99 (359)
                      ..+|.+|+++++   +..+|++...      ++|.+++.+++.+.....               ++. +.   ...+.+.
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~---------------l~~~~p~~~~~~h~~~  138 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRV---------------VLDGIPARPHGLHSGG  138 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEE---------------EEEEECCCTTCCCCCC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEE---------------EEEeCCCCCCCCcCCc
Confidence            568999999998   4447776542      689999987542211100               000 11   1224577


Q ss_pred             EEEEecCCCeEEEEeCC--------------CcEEEEeCCCC-------------eEEEEeecCCCccccccceEEEeC-
Q 018242          100 GLCFNKTNGDLYIADAY--------------FGLLKVGPEGG-------------LATAVATQSEGIPFRFCNSLDIDQ-  151 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~--------------~~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~d~-  151 (359)
                      +|++++ +|+||+++..              +.|+|+++++.             ..+.+.     ..+..|+++++|+ 
T Consensus       139 ~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-----~G~rnp~g~a~d~~  212 (352)
T 2ism_A          139 RIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS-----LGHRNPQGLAWHPK  212 (352)
T ss_dssp             CEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE-----ECCSEECCCEECTT
T ss_pred             eEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE-----EcCCCcccEEEECC
Confidence            999999 8899998631              35999998752             111111     1245799999999 


Q ss_pred             CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--------------CcEE--EEeCCCCCCceEEEccCCCEE
Q 018242          152 STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--------------KQVT--VLLGNLSFPNGVALSEDGNYI  215 (359)
Q Consensus       152 ~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--------------~~~~--~~~~~~~~p~gia~~~d~~~l  215 (359)
                      +|+ ||+++.+....+.         .....|.++.+..              +...  ........|.|+++. +| .+
T Consensus       213 ~g~-l~v~d~g~~~~~~---------~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~-~G-~l  280 (352)
T 2ism_A          213 TGE-LFSSEHGPSGEQG---------YGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF-RG-DL  280 (352)
T ss_dssp             TCC-EEEEEECC---------------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE-TT-EE
T ss_pred             CCC-EEEEEcCCCCCCC---------CCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE-CC-EE
Confidence            788 9999876432000         0001233333211              0000  011223468899994 55 48


Q ss_pred             EEEecCCCEEEEEEcCCCCC----cceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242          216 LLAETTSCRILRYWLKTSKA----GTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       216 ~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      |+++...++|++++++....    ...+.+....+.|.++++++||.||+++..
T Consensus       281 ~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          281 YVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             EEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence            99999999999999865431    112333332356899999999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.31  E-value=5.9e-09  Score=95.61  Aligned_cols=200  Identities=14%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             eCCCCCCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           30 IEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      .+--..-.+++++++| ++++++..++.|..||..+.+.....                  ...........++++++++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI------------------QGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE------------------CCCSTTCBEEEEEEETTEE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee------------------ecCCcCCceeEEEeCCCCC
Confidence            3333566799999999 87888999999999999876433221                  1112334567899998444


Q ss_pred             e-EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          109 D-LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       109 ~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      + ++.+...+.|..+|..+.....+....  .....+..+++++++++++.+                  ...+.|..+|
T Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~i~d  191 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATG------------------DSTGRLLLLG  191 (383)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEE------------------ETTSEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEE------------------CCCCCEEEEE
Confidence            4 444554556888999876655443211  112357789999999944444                  2356899999


Q ss_pred             CCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC-cceeEeecCCCCCCceEECC-CCCEEEEEec
Q 018242          188 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSP-RGGFWVGIHS  265 (359)
Q Consensus       188 ~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~-~G~lwv~~~~  265 (359)
                      .++.....+.........++++|+++.++++...++.|..||+..... ...............+++++ +|++.++...
T Consensus       192 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          192 LDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             TTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC
Confidence            865555555555566789999999985667777888999999875321 11111112233456789999 9986665554


Q ss_pred             CC
Q 018242          266 RR  267 (359)
Q Consensus       266 ~~  267 (359)
                      .+
T Consensus       272 d~  273 (383)
T 3ei3_B          272 RN  273 (383)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.31  E-value=2.6e-08  Score=88.94  Aligned_cols=195  Identities=10%  Similarity=0.075  Sum_probs=121.8

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      -....+++++++|++++++. ++.|..||..+++.. .+.                .+...........+++++++..++
T Consensus        51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~  113 (337)
T 1gxr_A           51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS----------------QLDCLNRDNYIRSCKLLPDGCTLI  113 (337)
T ss_dssp             SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSE----------------EEECSCTTSBEEEEEECTTSSEEE
T ss_pred             CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeee----------------cccccCCCCcEEEEEEcCCCCEEE
Confidence            34667999999999777776 899999998765211 000                001112234467899999444566


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ++...+.|..++.++++.........  ....+..+++++++++++++                  ...+.|..+|..++
T Consensus       114 ~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~------------------~~dg~v~~~d~~~~  173 (337)
T 1gxr_A          114 VGGEASTLSIWDLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSC------------------CSDGNIAVWDLHNQ  173 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEE------------------ETTSCEEEEETTTT
T ss_pred             EEcCCCcEEEEECCCCCcceeeeccc--CCCceEEEEECCCCCEEEEE------------------eCCCcEEEEeCCCC
Confidence            66655568899988776322211111  12346789999999955554                  22467999998876


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      +..... ........++++|+++.++. ...++.|..|++...+.  ... .........++++++|++.++....+.
T Consensus       174 ~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~  247 (337)
T 1gxr_A          174 TLVRQFQGHTDGASCIDISNDGTKLWT-GGLDNTVRSWDLREGRQ--LQQ-HDFTSQIFSLGYCPTGEWLAVGMESSN  247 (337)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEE--EEE-EECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceeeeeecccCceEEEEECCCCCEEEE-EecCCcEEEEECCCCce--Eee-ecCCCceEEEEECCCCCEEEEEcCCCc
Confidence            654433 33445678999999985554 45678999999865421  111 123334567899999986665554443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=2.8e-10  Score=98.89  Aligned_cols=167  Identities=13%  Similarity=0.046  Sum_probs=116.0

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      +...+++++....+++++++  |+.+|+.+ .++.+..+|+.+.+...                    .+. .. .|.|.
T Consensus        55 ~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~--------------------~i~-~g-~~~g~  110 (266)
T 2iwa_A           55 KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK--------------------NFT-HQ-MKDGW  110 (266)
T ss_dssp             CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE--------------------EEE-CC-SSSCC
T ss_pred             CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE--------------------EEE-CC-CCCeE
Confidence            33446777766778888887  33477655 45899999998764321                    111 11 23344


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeec-CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ-SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      .+.++++.+|+++..+.|..+|+++.++...... ..+.+...++.+.+. +|+ +|++...                 .
T Consensus       111 glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~-----------------~  171 (266)
T 2iwa_A          111 GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQ-----------------T  171 (266)
T ss_dssp             EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT-----------------S
T ss_pred             EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCC-----------------C
Confidence            4555578899998656799999998775433221 123345568888888 776 9998543                 3


Q ss_pred             ceEEEEeCCCCcEEEEe-C-C------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          181 GRLMKYDPATKQVTVLL-G-N------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~-~-~------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      +.|.++|+.++++.... - +            ...|+||+++++++.+|+++...+.++++++..
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            57999999998775432 1 1            135799999999999999999999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.30  E-value=4.1e-09  Score=94.23  Aligned_cols=189  Identities=8%  Similarity=-0.040  Sum_probs=126.1

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...+++++++|+.++++..++.|..||..+.+.....                  .+.........+++++++..++++.
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~------------------~~~~~~~~i~~~~~~~~~~~l~~~~  160 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------------------ELTSSAPACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------------------EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee------------------ecccCCCceEEEEECCCCCEEEEEe
Confidence            4558899999998888888999999999876422211                  1222233457889999555566666


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..++.++++.......    ....+..++++++|++++++                  ...+.|..||..+++..
T Consensus       161 ~dg~v~~~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          161 SDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTG------------------GLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             TTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEE------------------ETTSEEEEEETTTTEEE
T ss_pred             CCCcEEEEeCCCCceeeeeec----ccCceEEEEECCCCCEEEEE------------------ecCCcEEEEECCCCceE
Confidence            666799999988765432221    12356789999999945544                  23567999998877655


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ...........++++|+++.++++ ..++.|..|++....   ...+.........++++++|++.++....+
T Consensus       219 ~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  287 (337)
T 1gxr_A          219 QQHDFTSQIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeecCCCceEEEEECCCCCEEEEE-cCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence            444444456789999999865555 566789999986542   122222233456789999998766555444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.29  E-value=1.2e-10  Score=109.85  Aligned_cols=185  Identities=11%  Similarity=0.094  Sum_probs=116.0

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEecCCC-EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDG-RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ..+.+++ .++..|++|+++++|+ +|++...+ +|+++++.++....+...++.            +......+.+.||
T Consensus        17 f~~~~~a-~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~------------~~~~~g~~Gllgi   82 (454)
T 1cru_A           17 FDKKVIL-SNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEI------------VNDADGQNGLLGF   82 (454)
T ss_dssp             SCEEEEE-CCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTC------------CCCTTSSCSEEEE
T ss_pred             eEEEEEE-CCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCcc------------ccccCCCCceeEE
Confidence            3444555 4589999999999999 77766664 799998765544444311100            0000123457899


Q ss_pred             EEecC---CCeEEEEeCC-------------CcEEEEeCCCC--eE---EEEeecCCCccccccceEEEeCCCCEEEEEe
Q 018242          102 CFNKT---NGDLYIADAY-------------FGLLKVGPEGG--LA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTD  160 (359)
Q Consensus       102 ~~~~~---~g~l~v~~~~-------------~~i~~~~~~~~--~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d  160 (359)
                      +++|+   ++.||++...             ..|.|++.+.+  ++   +.+....+....+.+++|++++||+ |||+.
T Consensus        83 a~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~  161 (454)
T 1cru_A           83 AFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTI  161 (454)
T ss_dssp             EECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEE
T ss_pred             EECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEE
Confidence            99987   8999998642             35888876432  22   2333222222345789999999999 99995


Q ss_pred             CCCcccc-c---cce-----------eeeeecCCCceEEEEeCCCC-----------cEEEEeCCCCCCceEEEccCCCE
Q 018242          161 SSSQFQR-R---NHI-----------SVILSGDKTGRLMKYDPATK-----------QVTVLLGNLSFPNGVALSEDGNY  214 (359)
Q Consensus       161 ~~~~~~~-~---~~~-----------~~~~~~~~~g~v~~~d~~~~-----------~~~~~~~~~~~p~gia~~~d~~~  214 (359)
                      ....... .   ...           .........|+|+++++++.           ..+.+..+...|.+++|+++++ 
T Consensus       162 Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-  240 (454)
T 1cru_A          162 GDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-  240 (454)
T ss_dssp             CCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-
T ss_pred             CCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-
Confidence            3211000 0   000           00001123588999999854           3345666778899999999865 


Q ss_pred             EEEEecCCC
Q 018242          215 ILLAETTSC  223 (359)
Q Consensus       215 l~v~~~~~~  223 (359)
                      ||+++...+
T Consensus       241 L~~~d~g~~  249 (454)
T 1cru_A          241 LLQSEQGPN  249 (454)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCCC
Confidence            999987654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=4.9e-10  Score=100.41  Aligned_cols=195  Identities=13%  Similarity=0.024  Sum_probs=122.3

Q ss_pred             CCceEEEccCCCeeEEec------------CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           35 GPESLAFDALGEGPYTGV------------SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      .|.+++++++|+.+|++.            .++.|..||..+++....                    + .....+.+++
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--------------------~-~~~~~~~~~~  141 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--------------------F-EAPRQITMLA  141 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--------------------E-ECCSSCCCEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE--------------------E-eCCCCcceeE
Confidence            789999999998788875            458999999987643321                    1 1123477899


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec-----
Q 018242          103 FNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG-----  177 (359)
Q Consensus       103 ~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~-----  177 (359)
                      +++++..+|++  .+.|..+|..+++.........     .+..+.++++|+++|++..........+.......     
T Consensus       142 ~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          142 WARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS-----WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             ECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTT-----TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             ECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccc-----cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence            99955568887  3569999999887653322111     11234678888867776432110000000000000     


Q ss_pred             -CCCceEEEEeCCCCcEEEE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEEC
Q 018242          178 -DKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  254 (359)
Q Consensus       178 -~~~g~v~~~d~~~~~~~~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  254 (359)
                       .....|+.+|+.+++....  ......|.+++++||++.+|++   ++.|++|++...+   .......+..|.+++++
T Consensus       215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~s  288 (337)
T 1pby_B          215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNA---SIKRVPLPHSYYSVNVS  288 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTE---EEEEEECSSCCCEEEEC
T ss_pred             cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEECCCCc---CcceecCCCceeeEEEC
Confidence             0011588999988876532  1223467889999999998888   4799999975432   11122234568899999


Q ss_pred             CCCC-EEEEE
Q 018242          255 PRGG-FWVGI  263 (359)
Q Consensus       255 ~~G~-lwv~~  263 (359)
                      ++|+ +|++.
T Consensus       289 ~dg~~l~~~~  298 (337)
T 1pby_B          289 TDGSTVWLGG  298 (337)
T ss_dssp             TTSCEEEEES
T ss_pred             CCCCEEEEEc
Confidence            9997 66653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.29  E-value=8.1e-09  Score=93.81  Aligned_cols=223  Identities=7%  Similarity=-0.037  Sum_probs=134.4

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.+++++++|++++++..++.|..||..++++....                  .+.........+++++++..++.+
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~l~~~   70 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH------------------ELKEHNGQVTGVDWAPDSNRIVTC   70 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE------------------EEECCSSCEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee------------------eecCCCCcccEEEEeCCCCEEEEE
Confidence            35679999999998888888999999999877432221                  222233456789999944445555


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  192 (359)
                      ...+.|..++.++++.........  ....+..+.++++|++++++.                  ..+.|..+|.+++. 
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~------------------~d~~v~i~d~~~~~~  130 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGS------------------GSRVISICYFEQEND  130 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEE------------------TTSSEEEEEEETTTT
T ss_pred             cCCCeEEEEECCCCeeeeeEEeec--CCCceeEEEECCCCCEEEEEe------------------CCCEEEEEEecCCCc
Confidence            555568888988776443322111  123577899999999555542                  23456666655443 


Q ss_pred             ---EEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC-------------cceeEeec---CCCCCCceE
Q 018242          193 ---VTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-------------GTIEIVAQ---LPGFPDNIK  252 (359)
Q Consensus       193 ---~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~-------------~~~~~~~~---~~~~p~~i~  252 (359)
                         ..... ........++++|+++. +++...++.|..|++.....             ...+....   ..+....++
T Consensus       131 ~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (372)
T 1k8k_C          131 WWVCKHIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC  209 (372)
T ss_dssp             EEEEEEECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred             ceeeeeeecccCCCeeEEEEcCCCCE-EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence               22222 22345678999999985 45555678999999642110             01111111   223345689


Q ss_pred             ECCCCCEEEEEecCCCccccccccCCc-cceeeecCCccceeeeeeccc
Q 018242          253 RSPRGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSSLVK  300 (359)
Q Consensus       253 ~d~~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~  300 (359)
                      ++++|++.++....+.     +..++. .++.+..+..+...+..+.+.
T Consensus       210 ~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          210 FSANGSRVAWVSHDST-----VCLADADKKMAVATLASETLPLLAVTFI  253 (372)
T ss_dssp             ECSSSSEEEEEETTTE-----EEEEEGGGTTEEEEEECSSCCEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCE-----EEEEECCCCceeEEEccCCCCeEEEEEe
Confidence            9999976665555443     555553 566666555443344444443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.28  E-value=8.2e-10  Score=99.55  Aligned_cols=161  Identities=13%  Similarity=0.094  Sum_probs=105.5

Q ss_pred             EEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          100 GLCFNKTNGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      |+++.+ ++++|++... +.|.++|.++++....... .  ....+..++++++|+++|++...                
T Consensus         4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~--~~~~~~~~~~s~dg~~~~v~~~~----------------   63 (349)
T 1jmx_B            4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-P--DKFGPGTAMMAPDNRTAYVLNNH----------------   63 (349)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-S--SCCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEec-C--CCCCCceeEECCCCCEEEEEeCC----------------
Confidence            445555 7888887544 4699999998876433221 1  11247789999999878888432                


Q ss_pred             CCceEEEEeCCCCcEEEEeCC-------CCCCceEEEccCCCEEEEEecC-----------CCEEEEEEcCCCCCcceeE
Q 018242          179 KTGRLMKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETT-----------SCRILRYWLKTSKAGTIEI  240 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~d~~~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~  240 (359)
                       .+.|+.+|+++++.......       ...|.+++++|||+.+|++...           .+.|++|++...+......
T Consensus        64 -~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           64 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence             45799999988766533221       2337899999999999998854           5799999986532222111


Q ss_pred             eecCCCCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCc
Q 018242          241 VAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       241 ~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      ....+..+.+++++++|++|++...        +..++ ..++....++.
T Consensus       143 ~~~~~~~~~~~~~s~dg~l~~~~~~--------i~~~d~~~~~~~~~~~~  184 (349)
T 1jmx_B          143 TFPMPRQVYLMRAADDGSLYVAGPD--------IYKMDVKTGKYTVALPL  184 (349)
T ss_dssp             EEECCSSCCCEEECTTSCEEEESSS--------EEEECTTTCCEEEEECS
T ss_pred             eccCCCcccceeECCCCcEEEccCc--------EEEEeCCCCceeccccc
Confidence            1122334678889999998885321        44444 46666655543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.27  E-value=7.9e-09  Score=92.88  Aligned_cols=189  Identities=15%  Similarity=0.119  Sum_probs=122.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.++++.+++.++.++..++.|..||..+++...                    .+.........++++|++..+..+.
T Consensus        82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~--------------------~~~~~~~~~~~~~~spdg~~l~~g~  141 (321)
T 3ow8_A           82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK--------------------SIDAGPVDAWTLAFSPDSQYLATGT  141 (321)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCTTCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE--------------------EEeCCCccEEEEEECCCCCEEEEEc
Confidence            34578899999978888999999999998764221                    1112223345788999444444444


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.+..++.++++.......    ....+..++++|+|++|..+                  ...+.|..||..+++..
T Consensus       142 ~dg~v~i~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~lasg------------------~~dg~i~iwd~~~~~~~  199 (321)
T 3ow8_A          142 HVGKVNIFGVESGKKEYSLDT----RGKFILSIAYSPDGKYLASG------------------AIDGIINIFDIATGKLL  199 (321)
T ss_dssp             TTSEEEEEETTTCSEEEEEEC----SSSCEEEEEECTTSSEEEEE------------------ETTSCEEEEETTTTEEE
T ss_pred             CCCcEEEEEcCCCceeEEecC----CCceEEEEEECCCCCEEEEE------------------cCCCeEEEEECCCCcEE
Confidence            445588889887765432221    12356789999999944433                  23567999998877655


Q ss_pred             EEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          195 VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       195 ~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ... ........++++|+++ ++++...++.|..|++.....  ...+.........+++.++|.+.++....+.
T Consensus       200 ~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~  271 (321)
T 3ow8_A          200 HTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKS  271 (321)
T ss_dssp             EEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence            433 3334568999999998 556667788999999864321  1222222233456899999987776555443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.27  E-value=3e-09  Score=97.36  Aligned_cols=233  Identities=11%  Similarity=0.011  Sum_probs=134.0

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccc
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEH   93 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   93 (359)
                      ..++..+  ..| .++++|||+.+|++..          ++.|..||..+.+.. .+...+               ....
T Consensus        44 ~~~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~---------------~~~~  105 (361)
T 2oiz_A           44 LGMVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP---------------KRVQ  105 (361)
T ss_dssp             EEEEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT---------------TBCC
T ss_pred             EEEecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc---------------cccc
Confidence            3455555  478 9999999999998863          356999998876432 221110               0001


Q ss_pred             cCCcceEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEE-eecCCCc--ccccc----ceEEEeCCCCEEEEEeCC-C
Q 018242           94 ICGRPLGLCFNKTNGDLYIADAY--FGLLKVGPEGGLATAV-ATQSEGI--PFRFC----NSLDIDQSTGIIYFTDSS-S  163 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~-~~~~~~~--~~~~~----~~l~~d~~g~~l~v~d~~-~  163 (359)
                      ....|.++++++++..||+++..  +.|..+|.+++++... ... .+.  ....|    .-++..++|+.+|+.... .
T Consensus       106 ~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          106 GLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             BCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            22458899999977789998753  4599999998875432 221 110  00112    226677888855555321 0


Q ss_pred             c----------ccccc-ce--------eeeeecCCCceEEEEeCCCCcEEEEeC----------CCCCCc---eEEEccC
Q 018242          164 Q----------FQRRN-HI--------SVILSGDKTGRLMKYDPATKQVTVLLG----------NLSFPN---GVALSED  211 (359)
Q Consensus       164 ~----------~~~~~-~~--------~~~~~~~~~g~v~~~d~~~~~~~~~~~----------~~~~p~---gia~~~d  211 (359)
                      .          +.... ..        .........+.|+.+|..++....+..          ....|.   .+++++|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            0          00000 00        000001123567778775443322110          011233   4899999


Q ss_pred             CCEEEEEec----------CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccCC-c
Q 018242          212 GNYILLAET----------TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP-W  279 (359)
Q Consensus       212 ~~~l~v~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~-~  279 (359)
                      ++.+|++..          ..+.|++||++..+   .......+. |.+++++++|+ ||++. . +.     +.+++ .
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~---~v~~i~~~~-p~~ia~spdg~~l~v~n-~-~~-----v~v~D~~  333 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ---RVARIPGRD-ALSMTIDQQRNLMLTLD-G-GN-----VNVYDIS  333 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE---EEEEEECTT-CCEEEEETTTTEEEEEC-S-SC-----EEEEECS
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCc---EEEEEecCC-eeEEEECCCCCEEEEeC-C-Ce-----EEEEECC
Confidence            999999865          13589999975432   111123455 99999999997 55555 3 33     55554 5


Q ss_pred             cc--eeeecC
Q 018242          280 IG--NVLIKL  287 (359)
Q Consensus       280 ~g--~~~~~~  287 (359)
                      ++  ++++++
T Consensus       334 t~~l~~~~~i  343 (361)
T 2oiz_A          334 QPEPKLLRTI  343 (361)
T ss_dssp             SSSCEEEEEE
T ss_pred             CCcceeeEEe
Confidence            77  777775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.7e-08  Score=91.25  Aligned_cols=211  Identities=10%  Similarity=0.098  Sum_probs=127.3

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      -..-.+++++++|++++++..++.|..||..+++...                    .+.........+++++++..++.
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--------------------~~~~h~~~v~~~~~~~~~~~l~s   91 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--------------------TLDGHTGTIWSIDVDCFTKYCVT   91 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------------EECCCSSCEEEEEECTTSSEEEE
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------------hhhhcCCcEEEEEEcCCCCEEEE
Confidence            3456789999999988888889999999988764322                    22223344678999994444555


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      +...+.|..++..+++......     ....+..+.++++|++++++....             ....+.|..+|..++.
T Consensus        92 ~~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~-------------~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           92 GSADYSIKLWDVSNGQCVATWK-----SPVPVKRVEFSPCGNYFLAILDNV-------------MKNPGSINIYEIERDS  153 (369)
T ss_dssp             EETTTEEEEEETTTCCEEEEEE-----CSSCEEEEEECTTSSEEEEEECCB-------------TTBCCEEEEEEEEECT
T ss_pred             EeCCCeEEEEECCCCcEEEEee-----cCCCeEEEEEccCCCEEEEecCCc-------------cCCCCEEEEEEecCCc
Confidence            5555568899998877544332     123567899999999555542210             0112456666544321


Q ss_pred             ------------EEEEeCC--CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC
Q 018242          193 ------------VTVLLGN--LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  258 (359)
Q Consensus       193 ------------~~~~~~~--~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  258 (359)
                                  ...+...  ......++++++++.+++ ...++.|..|++.... .....+.........++++++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~  231 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA-GHKDGKISKYDVSNNY-EYVDSIDLHEKSISDMQFSPDLT  231 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE-EETTSEEEEEETTTTT-EEEEEEECCSSCEEEEEECTTSS
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE-EcCCCEEEEEECCCCc-EeEEEEecCCCceeEEEECCCCC
Confidence                        1111111  125678899999986555 4567899999986521 11222222233356789999998


Q ss_pred             EEEEEecCCCccccccccCC-ccceeeecCC
Q 018242          259 FWVGIHSRRKGISKLVLSFP-WIGNVLIKLP  288 (359)
Q Consensus       259 lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~  288 (359)
                      +.++....+.     +..++ ..++.+..+.
T Consensus       232 ~l~~~~~d~~-----i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          232 YFITSSRDTN-----SFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEEEEETTSE-----EEEEETTTCCEEEEEE
T ss_pred             EEEEecCCce-----EEEEECCCCceeeeec
Confidence            6665554443     44444 3455554443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.26  E-value=2.2e-08  Score=91.98  Aligned_cols=194  Identities=11%  Similarity=-0.019  Sum_probs=112.7

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceE-EEeecCCCCCCCCCCccccccccccc
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHI   94 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (359)
                      .+++.+  ..| +++++|||+.+|++..          ++.|..+|+.+.+.. .+......             .. ..
T Consensus        61 ~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~-------------~~-~~  123 (373)
T 2mad_H           61 GHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP-------------RF-DV  123 (373)
T ss_pred             EEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc-------------cc-cc
Confidence            355555  478 9999999999998863          467899999875432 22100000             00 01


Q ss_pred             CCcceEEEEecCCCeEEEEeCC--CcEEEEeCCCCeEEEE-eecCCCccccccceEEEeCCCCEEEEEeCCCccccccce
Q 018242           95 CGRPLGLCFNKTNGDLYIADAY--FGLLKVGPEGGLATAV-ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHI  171 (359)
Q Consensus        95 ~~~p~gi~~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~  171 (359)
                      ...|.+++++++++.||+++..  +.|..+| +++++... ..        .+..+.+.+++++.|++..          
T Consensus       124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--------~~~~~~~~~~~~~~~~~~~----------  184 (373)
T 2mad_H          124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--------SPTCYHIHPGAPSTFYLLC----------  184 (373)
T ss_pred             CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--------CCceEEEEeCCCceEEEEc----------
Confidence            2458899999978889998753  4699999 98876432 21        1122445566654777633          


Q ss_pred             eeeeecCCCceEEEEeCCCCcEEEEeC-----CCCCC--ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee--
Q 018242          172 SVILSGDKTGRLMKYDPATKQVTVLLG-----NLSFP--NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--  242 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~~~~~~~~~~-----~~~~p--~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--  242 (359)
                             ..|.+..++. +++......     ....|  ...++.++++.+|+.. ..+.++++|+..........+.  
T Consensus       185 -------~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~  255 (373)
T 2mad_H          185 -------AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             -------CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeec
Confidence                   2456777777 554442111     11112  2234556666566665 4568999987643211111111  


Q ss_pred             -----cCCCCCCc---eEECCCC-CEEEEEe
Q 018242          243 -----QLPGFPDN---IKRSPRG-GFWVGIH  264 (359)
Q Consensus       243 -----~~~~~p~~---i~~d~~G-~lwv~~~  264 (359)
                           ...-.|.+   ++++++| ++|++..
T Consensus       256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~  286 (373)
T 2mad_H          256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             CCcccccceecCceEeEEECCCCCEEEEEec
Confidence                 01113555   7889887 5898765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.26  E-value=2.6e-09  Score=99.70  Aligned_cols=187  Identities=12%  Similarity=0.053  Sum_probs=121.6

Q ss_pred             CCceEEEccCCCeeEEecCC---CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           35 GPESLAFDALGEGPYTGVSD---GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ...+++++|||+.++....+   ..|+.||..+++...+.                     ........++++|++..|+
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~---------------------~~~~~~~~~~~spdg~~la  238 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---------------------SFPRHNGAPAFSPDGSKLA  238 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------------------CCSSCEEEEEECTTSSEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee---------------------cCCCcccCEEEcCCCCEEE
Confidence            44578999999866655544   48999999887554332                     1223456889999444466


Q ss_pred             EEeCC---CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          112 IADAY---FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       112 v~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      ++...   ..|+.+|.++++...+...     ......++++|+|++|+++...               .....|+.+|.
T Consensus       239 ~~~~~~g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~  298 (415)
T 2hqs_A          239 FALSKTGSLNLYVMDLASGQIRQVTDG-----RSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNI  298 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCC-----SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEET
T ss_pred             EEEecCCCceEEEEECCCCCEEeCcCC-----CCcccceEECCCCCEEEEEECC---------------CCCcEEEEEEC
Confidence            45432   2499999998876544221     1245678999999967666321               11236999999


Q ss_pred             CCCcEEEEeCCCCCCceEEEccCCCEEEEEecC--CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEec
Q 018242          189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      ++++.+.+.........++++|||+.++++...  ...|+.|++....   ...+... .....++++++|+ |+++...
T Consensus       299 ~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~-~~~~~~~~spdg~~l~~~s~~  374 (415)
T 2hqs_A          299 NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST-FLDETPSLAPNGTMVIYSSSQ  374 (415)
T ss_dssp             TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS-SSCEEEEECTTSSEEEEEEEE
T ss_pred             CCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCC-CCcCCeEEcCCCCEEEEEEcC
Confidence            887765544333445678999999988887765  3589999986542   2222221 2356689999998 4445544


Q ss_pred             C
Q 018242          266 R  266 (359)
Q Consensus       266 ~  266 (359)
                      .
T Consensus       375 ~  375 (415)
T 2hqs_A          375 G  375 (415)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.26  E-value=2.7e-08  Score=88.55  Aligned_cols=204  Identities=11%  Similarity=0.068  Sum_probs=129.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.+++++|+|++++++..++.|..|+..+++....                    +.........+++++++..++.+
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~--------------------~~~h~~~v~~~~~~~~~~~l~s~   83 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--------------------ISGHKLGISDVAWSSDSNLLVSA   83 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE--------------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh--------------------hccCCCceEEEEEcCCCCEEEEE
Confidence            4556899999999888889999999999877644321                    22223346789999944445555


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|.++++.......    ....+..+.++++++ +.++-                 ...+.|..||..+++.
T Consensus        84 ~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~-~l~s~-----------------~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           84 SDDKTLKIWDVSSGKCLKTLKG----HSNYVFCCNFNPQSN-LIVSG-----------------SFDESVRIWDVKTGKC  141 (312)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSS-EEEEE-----------------ETTSCEEEEETTTCCE
T ss_pred             CCCCEEEEEECCCCcEEEEEcC----CCCCEEEEEEcCCCC-EEEEE-----------------eCCCcEEEEECCCCEE
Confidence            5555688899987764332221    123467789999999 44441                 2356789999887665


Q ss_pred             EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCCccc
Q 018242          194 TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKGIS  271 (359)
Q Consensus       194 ~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~~~~  271 (359)
                      .... ........++++++++. +++...++.|..|++...+.  ...+.. .......++++++|++.++....+.   
T Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~---  215 (312)
T 4ery_A          142 LKTLPAHSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNT---  215 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCE--EEEECCSSCCCEEEEEECTTSSEEEEEETTTE---
T ss_pred             EEEecCCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCce--eeEEeccCCCceEEEEECCCCCEEEEEcCCCe---
Confidence            4333 33344578999999985 45556778999999764321  122222 1122345889999987665555443   


Q ss_pred             cccccCC-ccceeeecC
Q 018242          272 KLVLSFP-WIGNVLIKL  287 (359)
Q Consensus       272 ~~~~~~~-~~g~~~~~~  287 (359)
                        +..++ ..++.+..+
T Consensus       216 --i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          216 --LKLWDYSKGKCLKTY  230 (312)
T ss_dssp             --EEEEETTTTEEEEEE
T ss_pred             --EEEEECCCCcEEEEE
Confidence              44444 345554443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=6.3e-09  Score=96.15  Aligned_cols=275  Identities=9%  Similarity=0.010  Sum_probs=159.5

Q ss_pred             CCCEEEEeeCC-CCCCceEEE-----------c--cCCCeeEEec-CCCEEEEEEcCCc----ceEEEeecCCCCCCCCC
Q 018242           22 TQGVVQYQIEG-AIGPESLAF-----------D--ALGEGPYTGV-SDGRIIKWHQDQR----RWLHFARTSPNRDGCEG   82 (359)
Q Consensus        22 ~~~~~~~~~~~-~~~p~~i~~-----------~--~~G~~l~~~~-~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~   82 (359)
                      +|.+.++..+. ...++-+-+           .  .+++.+|+.. ..++|+.+|..+.    +....-          .
T Consensus        58 ~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i----------e  127 (462)
T 2ece_A           58 SKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI----------E  127 (462)
T ss_dssp             TSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE----------C
T ss_pred             ceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeee----------c
Confidence            55566777764 225665555           6  7788888754 5579999998654    111110          0


Q ss_pred             Ccccccccc--cccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC
Q 018242           83 AYEYDHAAK--EHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST  153 (359)
Q Consensus        83 ~~~~~~~~~--~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g  153 (359)
                      |.     ++  ......|+++.+.+ +| +||+...       +++..+|.++.++...... ...+...+.++-+.|++
T Consensus       128 ~~-----~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~  199 (462)
T 2ece_A          128 PE-----EVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPN  199 (462)
T ss_dssp             HH-----HHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTT
T ss_pred             hh-----hcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCC
Confidence            00     11  11223699999999 77 9987543       3699999998886543321 12233456788899999


Q ss_pred             CEEEEEeCCCcccc-ccceeeeeecCCCceEEEEeCCCCcEEEEeCC---CCCCceEEE--ccCCCEEEEEec-----CC
Q 018242          154 GIIYFTDSSSQFQR-RNHISVILSGDKTGRLMKYDPATKQVTVLLGN---LSFPNGVAL--SEDGNYILLAET-----TS  222 (359)
Q Consensus       154 ~~l~v~d~~~~~~~-~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~--~~d~~~l~v~~~-----~~  222 (359)
                      +.+++++.+..-.. ..+..+........+|..||.++++......-   ...|.++.|  +|++++.|++..     .+
T Consensus       200 ~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls  279 (462)
T 2ece_A          200 EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS  279 (462)
T ss_dssp             TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC
T ss_pred             CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC
Confidence            96666654311000 00000000001245799999887654432221   245777777  999999999999     88


Q ss_pred             CEEEEEEcCCCCCcceeEe--e------cC----------CCCCCceEECCCCC-EEEEEecCCCccccccccCC----c
Q 018242          223 CRILRYWLKTSKAGTIEIV--A------QL----------PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP----W  279 (359)
Q Consensus       223 ~~i~~~~~~~~~~~~~~~~--~------~~----------~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~----~  279 (359)
                      +.|++|..+++.....+.+  .      .+          ++.|.+|.+++||+ ||+++++.+.     +.+|+    .
T Consensus       280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~-----VavfdV~d~~  354 (462)
T 2ece_A          280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE-----VRQYDISNPF  354 (462)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE-----EEEEECSSTT
T ss_pred             ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE-----EEEEEecCCC
Confidence            8998877654322111111  0      01          25688899999996 8998887664     33332    2


Q ss_pred             cceeeecCCcccee--eee---ecccccCcceEEEEECCCCCEEEEEE
Q 018242          280 IGNVLIKLPIDIVK--IHS---SLVKLSGNGGMAMRISEQGNVLEILE  322 (359)
Q Consensus       280 ~g~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~  322 (359)
                      +.+++..+++....  +..   .-..+.++   -+.++++|+.+.+-.
T Consensus       355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr---~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQ---MLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEEECBTTTTCBCCTTSCCCCSCCC---CEEECTTSSEEEEEC
T ss_pred             CcEEEEEEEeCCeeccccccccccCCCCCC---EEEEcCCCCEEEEEc
Confidence            45666666654210  000   00001122   366889998877654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=1.9e-09  Score=99.57  Aligned_cols=198  Identities=12%  Similarity=0.008  Sum_probs=119.3

Q ss_pred             CCCCceEEEccCCCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc-ccCCcceEEEEec
Q 018242           33 AIGPESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE-HICGRPLGLCFNK  105 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gi~~~~  105 (359)
                      ...|+.+...|+| +++....+      ++|..+|.++.+...--                  ... ....-+..+.+.+
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~------------------~~~~~~~~~~Yd~~~~p  197 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW------------------EIDRGDQYLAYDFWWNL  197 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC------------------CSBCTTCCCCCCEEEET
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE------------------ccCCCCccccceEEECC
Confidence            4589999999999 44443333      68999999987543210                  000 1111234577888


Q ss_pred             CCCeEEEEeC-------------------CCcEEEEeCCCCeEEEEeecCCCccccccceEEE--eCCCCEEEEEeCCCc
Q 018242          106 TNGDLYIADA-------------------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI--DQSTGIIYFTDSSSQ  164 (359)
Q Consensus       106 ~~g~l~v~~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--d~~g~~l~v~d~~~~  164 (359)
                      +.+.++++++                   .+.|..+|.+++++......  +.+...|..|.+  +|+|+++|++..   
T Consensus       198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v--g~~g~~P~~i~f~~~Pdg~~aYV~~e---  272 (462)
T 2ece_A          198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL--GEENRMALELRPLHDPTKLMGFINMV---  272 (462)
T ss_dssp             TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES--CTTEEEEEEEEECSSTTCCEEEEEEE---
T ss_pred             CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec--CCCCCccceeEeeECCCCCEEEEEEe---
Confidence            4444444442                   35699999988765433221  112345667766  999999999842   


Q ss_pred             cccccceeeeeecCCCceEEEEeCCCCcEEEEe-----C-----C-----------CCCCceEEEccCCCEEEEEecCCC
Q 018242          165 FQRRNHISVILSGDKTGRLMKYDPATKQVTVLL-----G-----N-----------LSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       165 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-----~-----~-----------~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                               +......+.|+.+..+.++++...     .     .           ...|.+|.+++|+++||+++...+
T Consensus       273 ---------~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d  343 (462)
T 2ece_A          273 ---------VSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIG  343 (462)
T ss_dssp             ---------EETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTT
T ss_pred             ---------eeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCC
Confidence                     000012334443332223322111     0     0           245789999999999999999999


Q ss_pred             EEEEEEcCCCCCcceeEeecC---------------CCCCCceEECCCCC-EEEEE
Q 018242          224 RILRYWLKTSKAGTIEIVAQL---------------PGFPDNIKRSPRGG-FWVGI  263 (359)
Q Consensus       224 ~i~~~~~~~~~~~~~~~~~~~---------------~~~p~~i~~d~~G~-lwv~~  263 (359)
                      .|.+|++......+.......               .+.|.+++++++|+ ||+++
T Consensus       344 ~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          344 EVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999864322221111111               12599999999996 77777

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.24  E-value=5.7e-09  Score=101.04  Aligned_cols=206  Identities=8%  Similarity=-0.110  Sum_probs=133.7

Q ss_pred             CCceEEEccC-CCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDAL-GEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~-G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .|....+..| ++++|++ ..++.|..+|..+++....                    + .....|+++++++++..+|+
T Consensus       155 ~P~~~~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~--------------------i-~~g~~p~~v~~SpDGr~lyv  213 (567)
T 1qks_A          155 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTV--------------------L-DTGYAVHISRLSASGRYLFV  213 (567)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEE--------------------E-ECSSCEEEEEECTTSCEEEE
T ss_pred             cccccccccCCCceEEEEeCCCCeEEEEECCCCeEEEE--------------------E-eCCCCccceEECCCCCEEEE
Confidence            3544443333 3335554 4568999999998754321                    1 22346889999997777999


Q ss_pred             EeCCCcEEEEeCC--CCeEEEEeecCCCccccccceEEEe----CCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          113 ADAYFGLLKVGPE--GGLATAVATQSEGIPFRFCNSLDID----QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       113 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d----~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++..+.|..+|+.  ++++.....  .   ...|.+++++    |||+++|+++.                 ..+.|..+
T Consensus       214 ~~~dg~V~viD~~~~t~~~v~~i~--~---G~~P~~ia~s~~~~pDGk~l~v~n~-----------------~~~~v~Vi  271 (567)
T 1qks_A          214 IGRDGKVNMIDLWMKEPTTVAEIK--I---GSEARSIETSKMEGWEDKYAIAGAY-----------------WPPQYVIM  271 (567)
T ss_dssp             EETTSEEEEEETTSSSCCEEEEEE--C---CSEEEEEEECCSTTCTTTEEEEEEE-----------------ETTEEEEE
T ss_pred             EcCCCeEEEEECCCCCCcEeEEEe--c---CCCCceeEEccccCCCCCEEEEEEc-----------------cCCeEEEE
Confidence            8866679999995  554432111  1   2357899999    69999999942                 24578888


Q ss_pred             eCCCCcEEEEe-CC-----------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEEC
Q 018242          187 DPATKQVTVLL-GN-----------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  254 (359)
Q Consensus       187 d~~~~~~~~~~-~~-----------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  254 (359)
                      |..+.+..... ..           ...+.++..++++...+++....+.|+.++....+...... ......|+++.+|
T Consensus       272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~-i~~~~~~~d~~~~  350 (567)
T 1qks_A          272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLD  350 (567)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-EECCSSEEEEEEC
T ss_pred             ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee-eeccccccCceEC
Confidence            98876654322 11           11235788888888888888888999999976532111111 1234568889999


Q ss_pred             CCCC-EEEEEecCCCcccccccc-CCccceeeecCCc
Q 018242          255 PRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPI  289 (359)
Q Consensus       255 ~~G~-lwv~~~~~~~~~~~~~~~-~~~~g~~~~~~~~  289 (359)
                      ++|+ +|+++...+.     +.+ +..++++...+++
T Consensus       351 pdgr~~~va~~~sn~-----V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          351 GSHRYFITAANARNK-----LVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             TTSCEEEEEEGGGTE-----EEEEETTTTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCe-----EEEEECCCCcEEEEEec
Confidence            9997 5667766554     333 3457777776655

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.24  E-value=6.6e-08  Score=86.79  Aligned_cols=269  Identities=12%  Similarity=0.026  Sum_probs=151.7

Q ss_pred             CCceEEEccC----CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           35 GPESLAFDAL----GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        35 ~p~~i~~~~~----G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      .-.++++.++    +.+++++..++.|..|+..+.+.....                  .+.........+.+++ ++.+
T Consensus        34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~------------------~l~gh~~~v~~~~~~~-~~~~   94 (321)
T 3ow8_A           34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQW------------------SLEGHQLGVVSVDISH-TLPI   94 (321)
T ss_dssp             CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEE------------------EECCCSSCEEEEEECS-SSSE
T ss_pred             cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeee------------------eeccCCCCEEEEEECC-CCCE
Confidence            3457888764    667888999999999998765332111                  1222233456788888 5555


Q ss_pred             EEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          111 YIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       111 ~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      .++ ...+.|..+|..+++.......    ....+..++++|+|+++..+                  ...+.|..++.+
T Consensus        95 l~s~s~D~~i~lWd~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~g------------------~~dg~v~i~~~~  152 (321)
T 3ow8_A           95 AASSSLDAHIRLWDLENGKQIKSIDA----GPVDAWTLAFSPDSQYLATG------------------THVGKVNIFGVE  152 (321)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEC----CTTCCCCEEECTTSSEEEEE------------------CTTSEEEEEETT
T ss_pred             EEEEeCCCcEEEEECCCCCEEEEEeC----CCccEEEEEECCCCCEEEEE------------------cCCCcEEEEEcC
Confidence            444 4445588899988765332221    11245679999999944333                  335678889887


Q ss_pred             CCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          190 TKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       190 ~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      +++.... .........++++|+++. +++...++.|..||+...+.  ...+.........++++++|++.++....+.
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~  229 (321)
T 3ow8_A          153 SGKKEYSLDTRGKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGY  229 (321)
T ss_dssp             TCSEEEEEECSSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred             CCceeEEecCCCceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence            7655433 333445678999999985 45556778999999764321  1222222233567999999987776655554


Q ss_pred             ccccccccCCc-cceeeecCCccceeeeeecccccCcceEEEEECCCC----------CEEEEEEccCCceeeceEEEEE
Q 018242          269 GISKLVLSFPW-IGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG----------NVLEILEEIGRKMWRSISEVEE  337 (359)
Q Consensus       269 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~~~~~~~~g~~~~~~~~~~~  337 (359)
                           +..++. .++....+......+..+.+.....  .++.-..++          ..+..+....    ..+..+..
T Consensus       230 -----i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~h~----~~v~~v~~  298 (321)
T 3ow8_A          230 -----IKIYDVQHANLAGTLSGHASWVLNVAFCPDDT--HFVSSSSDKSVKVWDVGTRTCVHTFFDHQ----DQVWGVKY  298 (321)
T ss_dssp             -----EEEEETTTCCEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS----SCEEEEEE
T ss_pred             -----EEEEECCCcceeEEEcCCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCEEEEEEcCCC----CcEEEEEE
Confidence                 555543 4555554444333344443332221  122222222          2222232211    23444544


Q ss_pred             e-CCEEEEecCCCCeEEEEcCC
Q 018242          338 K-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       338 ~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      . +++..++.-.+..|.+.+.+
T Consensus       299 s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          299 NGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCCEEEEEeCCCeEEEEeCC
Confidence            3 45444554456778887754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.23  E-value=7.4e-09  Score=94.12  Aligned_cols=192  Identities=8%  Similarity=0.059  Sum_probs=120.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.++++.++++ +.++..+|.|..||..+++......                ............+++++++..|..+..
T Consensus        85 v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~----------------~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           85 VADLTWVGERG-ILVASDSGAVELWELDENETLIVSK----------------FCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             EEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEE----------------EEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEee----------------ccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            35788999987 7888999999999998764221100                011122344678999994444444554


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.|..+|..+++......   + ....+..+++.+++..++++-                 +..+.|..||..+++...
T Consensus       148 d~~i~iwd~~~~~~~~~~~---~-h~~~V~~~~~~~~~~~~l~s~-----------------s~D~~v~iwd~~~~~~~~  206 (344)
T 4gqb_B          148 DICIKVWDLAQQVVLSSYR---A-HAAQVTCVAASPHKDSVFLSC-----------------SEDNRILLWDTRCPKPAS  206 (344)
T ss_dssp             TSCEEEEETTTTEEEEEEC---C-CSSCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTSSSCEE
T ss_pred             CCeEEEEECCCCcEEEEEc---C-cCCceEEEEecCCCCCceeee-----------------ccccccccccccccceee
Confidence            5568899999887543222   1 123567889999886466652                 235678899988765443


Q ss_pred             EeC---CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCC
Q 018242          196 LLG---NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       196 ~~~---~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~  267 (359)
                      ...   ....+..++++|++..++++...++.|..||+...+.  ...+.........+++.++|. +.++....+
T Consensus       207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~  280 (344)
T 4gqb_B          207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDC  280 (344)
T ss_dssp             ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred             eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCC
Confidence            221   1233568899987666788888889999999865422  222322223345689999884 555444444

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.22  E-value=1.3e-09  Score=93.73  Aligned_cols=187  Identities=16%  Similarity=0.038  Sum_probs=119.0

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCC---CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc--e
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSD---GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP--L   99 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~   99 (359)
                      +..++.+.-..-+++.++ +|. ||.++..   ..|.++|+++++...-.                     .....+  .
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~---------------------~l~~~~Fge   90 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQI---------------------ELGKRYFGE   90 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEEE---------------------ECCTTCCEE
T ss_pred             EEEecCCCCcccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEEE---------------------ecCCcccee
Confidence            346777754444899998 665 8877754   38999999998654321                     111233  3


Q ss_pred             EEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          100 GLCFNKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      |++++  +++||++++.. .+.++|+++.+...-... .+    ...+++.  +|++||+++.                 
T Consensus        91 Git~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~-~~----eG~glt~--dg~~L~~SdG-----------------  144 (262)
T 3nol_A           91 GISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-DG----EGWGLTH--NDQYLIMSDG-----------------  144 (262)
T ss_dssp             EEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC-SS----CCCCEEE--CSSCEEECCS-----------------
T ss_pred             EEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC-CC----CceEEec--CCCEEEEECC-----------------
Confidence            56665  78999998765 488999998775432221 11    2245554  4555999952                 


Q ss_pred             CCceEEEEeCCCCcEEEEeC------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--------
Q 018242          179 KTGRLMKYDPATKQVTVLLG------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--------  244 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--------  244 (359)
                       .+.|+.+|+++.+......      ....+|.+.+. +| .+|+....++.|.++|.+..+....-.+..+        
T Consensus       145 -s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~  221 (262)
T 3nol_A          145 -TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLP  221 (262)
T ss_dssp             -SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCC
T ss_pred             -CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccccc
Confidence             3479999999876553221      12345667775 66 5999998899999999765432111111101        


Q ss_pred             --CCCCCceEECCCC-CEEEEE
Q 018242          245 --PGFPDNIKRSPRG-GFWVGI  263 (359)
Q Consensus       245 --~~~p~~i~~d~~G-~lwv~~  263 (359)
                        ...|+|||+|+++ ++||+.
T Consensus       222 ~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          222 SPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             SSCCCEEEEEEETTTTEEEEEE
T ss_pred             CcCCceEEEEEcCCCCEEEEEC
Confidence              1357889999976 577765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.22  E-value=5.2e-09  Score=98.06  Aligned_cols=196  Identities=18%  Similarity=0.170  Sum_probs=125.1

Q ss_pred             CCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.+|+++| +++++.++..+|.|..||..+.+...+.                  ...........|+|+|.+++++++
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------------------~~~gH~~~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------------------KGIGAGGSITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE------------------CCCSSSCCCCEEEECSSCTTEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE------------------EccCCCCCEEEEEEeCCCCCEEEE
Confidence            456899998 5666888999999999998765322211                  122233456789999766666665


Q ss_pred             eCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ...+ .|..+|.+++....+....  .....+..+.++++|+ +.++                 +...+.|..+|.++..
T Consensus       183 ~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~l~~-----------------g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNILRVFASSD--TINIWFCSLDVSASSR-MVVT-----------------GDNVGNVILLNMDGKE  242 (435)
T ss_dssp             ECSSSCEEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTT-EEEE-----------------ECSSSBEEEEESSSCB
T ss_pred             EeCCCEEEEeeccCCceeEEeccC--CCCccEEEEEECCCCC-EEEE-----------------EeCCCcEeeeccCcce
Confidence            4444 4888899887765543311  1122456789999999 4444                 1335679999987655


Q ss_pred             EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-eeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          193 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       193 ~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      +..+..+......++++|+++.++++...++.|..||+....... .............++++++|++.++....+.
T Consensus       243 ~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          243 LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence            444333344567899999988788888888999999986432211 1000011122345788899986665554443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.21  E-value=1.1e-09  Score=100.29  Aligned_cols=213  Identities=8%  Similarity=-0.018  Sum_probs=116.6

Q ss_pred             CCCceEEEccCCCeeEEecC--CCEEEEEEcCCcceEEE-eecCCCCCCCCCC-----------ccccc-ccc-------
Q 018242           34 IGPESLAFDALGEGPYTGVS--DGRIIKWHQDQRRWLHF-ARTSPNRDGCEGA-----------YEYDH-AAK-------   91 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~--~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~-~~~-------   91 (359)
                      ..|++++++|||+.+|++..  .+.|..||..+++.... -..+........|           .+... +..       
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            57999999999999998874  47899999988754321 1000000000000           00000 000       


Q ss_pred             --------cccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEee--cCC------CccccccceEEEeCCCCE
Q 018242           92 --------EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVAT--QSE------GIPFRFCNSLDIDQSTGI  155 (359)
Q Consensus        92 --------~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~d~~g~~  155 (359)
                              ......|..+...+++..+|+....+.++.+|..++.......  ...      ......+..++++++|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence                    0000111122222323344444433446666665443322111  000      000012334899999888


Q ss_pred             EEEEeC--CCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          156 IYFTDS--SSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       156 l~v~d~--~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      +|++..  +....+         ......|+.||..+++......... |.+++++|||++||+++.  +.|.+||....
T Consensus       268 lyv~~~~~~~~~~~---------~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          268 MYVFMHPDGKEGTH---------KFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             EEEEEESSCCTTCT---------TCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             EEEEEccCCCcccc---------cCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            999843  100000         0123479999999887654433334 999999999999999884  89999997654


Q ss_pred             CCcceeEeecCCCCCCceEECCCCC
Q 018242          234 KAGTIEIVAQLPGFPDNIKRSPRGG  258 (359)
Q Consensus       234 ~~~~~~~~~~~~~~p~~i~~d~~G~  258 (359)
                      .+.....+...+..|.+++++++|+
T Consensus       336 ~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cceeeEEeccCCCCcEEEEecCCCC
Confidence            2222222223556799999999985

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.20  E-value=2.6e-09  Score=91.83  Aligned_cols=186  Identities=13%  Similarity=0.059  Sum_probs=119.6

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc--eEE
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP--LGL  101 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~gi  101 (359)
                      +..++.+.-..-.++.++ ++. ||+++.. +.|.++|+++++...-                    .  ....+  .|+
T Consensus        46 v~~~phd~~~ftqGL~~~-~~~-Ly~stG~~g~v~~iD~~Tgkv~~~--------------------~--l~~~~FgeGi  101 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFH-QGH-FFESTGHQGTLRQLSLESAQPVWM--------------------E--RLGNIFAEGL  101 (268)
T ss_dssp             EEEEECCTTCCEEEEEEE-TTE-EEEEETTTTEEEECCSSCSSCSEE--------------------E--ECTTCCEEEE
T ss_pred             EEEEcCCCccccceEEEE-CCE-EEEEcCCCCEEEEEECCCCcEEeE--------------------E--CCCCcceeEE
Confidence            446777765555899997 355 7776654 7899999998854321                    1  11223  346


Q ss_pred             EEecCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          102 CFNKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +++  +++||++++.. .+.++|+++.+...-... .    ....+++.  +|++||+++.                  .
T Consensus       102 t~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~-~----~eGwGLt~--Dg~~L~vSdG------------------s  154 (268)
T 3nok_A          102 ASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRY-S----GEGWGLCY--WNGKLVRSDG------------------G  154 (268)
T ss_dssp             EEC--SSCEEEEESSSCEEEEEETTTTEEEEEEEC-S----SCCCCEEE--ETTEEEEECS------------------S
T ss_pred             EEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeC-C----CceeEEec--CCCEEEEECC------------------C
Confidence            554  78999998765 488999998876432221 1    12346664  4556999952                  4


Q ss_pred             ceEEEEeCCCCcEEEEeCC------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----------
Q 018242          181 GRLMKYDPATKQVTVLLGN------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----------  243 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----------  243 (359)
                      +.|+.+|+++.+......-      ...++.+.+. +| .+|+....++.|.++|.+..+....-.+..           
T Consensus       155 ~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~  232 (268)
T 3nok_A          155 TMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTN  232 (268)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCC
T ss_pred             CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccC
Confidence            5799999998765532211      2345677765 66 499998889999999976543221111111           


Q ss_pred             CCCCCCceEECCCC-CEEEEE
Q 018242          244 LPGFPDNIKRSPRG-GFWVGI  263 (359)
Q Consensus       244 ~~~~p~~i~~d~~G-~lwv~~  263 (359)
                      ....++|||+|+++ +|||+.
T Consensus       233 ~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          233 PEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTCCEEEEEECTTTCCEEEEE
T ss_pred             cCCceEEEEEcCCCCEEEEeC
Confidence            11357899999975 688865

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.20  E-value=5.2e-09  Score=95.77  Aligned_cols=148  Identities=14%  Similarity=-0.016  Sum_probs=95.5

Q ss_pred             EEccCCCeeEEecC-----CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           40 AFDALGEGPYTGVS-----DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        40 ~~~~~G~~l~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      +..|+|+.+|+...     .+.|+.+|..+.+...                    . ......|+ +++++++..+|+++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~--------------------~-I~vG~~P~-va~spDG~~lyVan   96 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG--------------------M-IDGGFLPN-PVVADDGSFIAHAS   96 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE--------------------E-EEECSSCE-EEECTTSSCEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE--------------------E-EECCCCCc-EEECCCCCEEEEEc
Confidence            34588988998865     4799999999875332                    1 12334575 99999778899997


Q ss_pred             C----------CCcEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          115 A----------YFGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       115 ~----------~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      .          .+.|.++|..+.++........+   .....|+.++++|||+++|+++..                ..+
T Consensus        97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~  160 (386)
T 3sjl_D           97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAP  160 (386)
T ss_dssp             EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSC
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCC
Confidence            3          23489999999876432221111   112478899999999999999532                235


Q ss_pred             eEEEEeCCCCcEEEEeCC----CCCCce----EEEccCCCEEEEEecCCCEE
Q 018242          182 RLMKYDPATKQVTVLLGN----LSFPNG----VALSEDGNYILLAETTSCRI  225 (359)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~----~~~p~g----ia~~~d~~~l~v~~~~~~~i  225 (359)
                      .|..+|..++++......    ...|.+    +++++||+.+|+.....+.+
T Consensus       161 ~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             eEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence            799999998876533211    112333    35666666555554433444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.19  E-value=5.1e-09  Score=89.26  Aligned_cols=187  Identities=18%  Similarity=0.079  Sum_probs=120.4

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCC---CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc--e
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSD---GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP--L   99 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~   99 (359)
                      +..++.+....-+|++++. ++ ||.++..   ..|.++|+.+++...-.                     .....+  .
T Consensus        12 ~~~~phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~---------------------~l~~~~fge   68 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQRA---------------------EVPPPYFGA   68 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEEE---------------------ECCTTCCEE
T ss_pred             EEEcCCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEEE---------------------eCCCCccee
Confidence            4477778777888999986 55 8888765   48999999998654321                     111223  3


Q ss_pred             EEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          100 GLCFNKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      |++++  +++||+.++.. .++++|.++.+...-... .    ....+++.  +|++||++|.                 
T Consensus        69 Gi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~----~~Gwglt~--dg~~L~vSdg-----------------  122 (243)
T 3mbr_X           69 GIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRY-P----GEGWALTS--DDSHLYMSDG-----------------  122 (243)
T ss_dssp             EEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEEC-S----SCCCEEEE--CSSCEEEECS-----------------
T ss_pred             EEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC-C----CCceEEee--CCCEEEEECC-----------------
Confidence            55555  78999998765 488999998775432221 1    12345554  4455999952                 


Q ss_pred             CCceEEEEeCCCCcEEEEeCC------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--------
Q 018242          179 KTGRLMKYDPATKQVTVLLGN------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--------  244 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~~------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--------  244 (359)
                       .+.|+.+|+++.+......-      ....+.+.+. +| .+|+....++.|.++|....+....-.+..+        
T Consensus       123 -s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~  199 (243)
T 3mbr_X          123 -TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT  199 (243)
T ss_dssp             -SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred             -CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence             35799999998765432211      2334566654 55 4999888899999999765432211111111        


Q ss_pred             ---CCCCCceEECCCC-CEEEEE
Q 018242          245 ---PGFPDNIKRSPRG-GFWVGI  263 (359)
Q Consensus       245 ---~~~p~~i~~d~~G-~lwv~~  263 (359)
                         ...++|||.|+++ +|||+.
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCcCCceEEEEEcCCCCEEEEEC
Confidence               1256889999976 588765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.19  E-value=3e-09  Score=91.49  Aligned_cols=163  Identities=18%  Similarity=0.200  Sum_probs=112.3

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      +...++.+++-...++++++  |+.+|+.+. ++.++.+|+++.+.. ++.                      ......|
T Consensus        76 kv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~----------------------~~~eG~g  131 (262)
T 3nol_A           76 KTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFN----------------------YDGEGWG  131 (262)
T ss_dssp             CEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEE----------------------CSSCCCC
T ss_pred             cEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEE----------------------CCCCceE
Confidence            33446667665566888886  334787664 579999999886432 221                      1223456


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeec-CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          101 LCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ-SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      ++.+  ++.||+++..+.|..+|+++.++...... ..+.+...+|.+.+. +|+ ||+....                 
T Consensus       132 lt~d--g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~-----------------  190 (262)
T 3nol_A          132 LTHN--DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQ-----------------  190 (262)
T ss_dssp             EEEC--SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT-----------------
T ss_pred             EecC--CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEcc-----------------
Confidence            6644  78899998656799999998776543222 223455667777776 787 9998643                 


Q ss_pred             CceEEEEeCCCCcEEEEeC--C-----------CCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          180 TGRLMKYDPATKQVTVLLG--N-----------LSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~--~-----------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ...|.++|++++++.....  +           ...|||||++|+++.|||++..=..++.+.+
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            3479999999998764321  1           1357999999999999999877677777765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.18  E-value=1.4e-08  Score=92.32  Aligned_cols=230  Identities=10%  Similarity=-0.027  Sum_probs=130.3

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ...+++++ ++.+..+...+.|..+|.++++...... ...+ ....+..++++|+|+ ..++-                
T Consensus        85 v~~~~~s~-d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~-~l~sg----------------  145 (344)
T 4gqb_B           85 VADLTWVG-ERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGT-QAVSG----------------  145 (344)
T ss_dssp             EEEEEEET-TTEEEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSS-EEEEE----------------
T ss_pred             EEEEEEeC-CCeEEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCC-EEEEE----------------
Confidence            56789999 7888888766668888988765322111 0000 123577899999999 44441                


Q ss_pred             cCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-C-CCCCCceEE
Q 018242          177 GDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKR  253 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~p~~i~~  253 (359)
                       +..+.|..+|.++++..... .+......+++++++..++++...++.|..||+...+.  ...+.. . ...+..+++
T Consensus       146 -s~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  222 (344)
T 4gqb_B          146 -SKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAW  222 (344)
T ss_dssp             -ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEE
T ss_pred             -eCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeee
Confidence             23567999999887665433 33455678999999877888888889999999865422  111211 1 122456788


Q ss_pred             CCC-CCEEEEEecCCCccccccccCC-ccceeeecCCccceeeeeecccccCc--------ceEEEEECCCCCEEEEEEc
Q 018242          254 SPR-GGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGN--------GGMAMRISEQGNVLEILEE  323 (359)
Q Consensus       254 d~~-G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~  323 (359)
                      .++ ++++++....+.     +..++ ..++.+..+......+..+.+.....        ...+..+|.+...+..+..
T Consensus       223 ~p~~~~~l~sg~~dg~-----v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~  297 (344)
T 4gqb_B          223 HPQQSEVFVFGDENGT-----VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA  297 (344)
T ss_dssp             CSSCTTEEEEEETTSE-----EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC
T ss_pred             cCCCCcceEEeccCCc-----EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC
Confidence            775 467665544443     45554 35666655554444444444432221        0123333433333333222


Q ss_pred             cCCceeeceEEEEEe--CCEEEEecCCCCeEEEEcCC
Q 018242          324 IGRKMWRSISEVEEK--DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       324 ~~g~~~~~~~~~~~~--~g~l~ig~~~~~~l~~~~~~  358 (359)
                      +.    ..+..+...  +.+|+++.-.+..|.+.+++
T Consensus       298 H~----~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          298 HR----DFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             CS----SCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             CC----CCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence            21    244555543  44566554346667776654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.17  E-value=3.8e-08  Score=91.52  Aligned_cols=154  Identities=12%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-Ee
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-AD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~~  114 (359)
                      ..+++++|++.+++++..++.|..||..+++...                    .+.........+++++ ++++++ +.
T Consensus       111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------~l~~h~~~V~~v~~~~-~~~~l~sgs  169 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------TLKGHTDSVQDISFDH-SGKLLASCS  169 (410)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------------EECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------------EEeccCCcEEEEEEcC-CCCEEEEEe
Confidence            3488999999988889999999999998764321                    1222334467899999 555444 45


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..+|..+++.....   .+ ....+..+.++|+|+ ..++-                 +..+.|..||..++...
T Consensus       170 ~D~~i~iwd~~~~~~~~~~---~~-h~~~V~~v~~~p~~~-~l~s~-----------------s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          170 ADMTIKLWDFQGFECIRTM---HG-HDHNVSSVSIMPNGD-HIVSA-----------------SRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             TTSCCCEEETTSSCEEECC---CC-CSSCEEEEEECSSSS-EEEEE-----------------ETTSEEEEEETTTCCEE
T ss_pred             CCCeEEEEeCCCCceeEEE---cC-CCCCEEEEEEeCCCC-EEEEE-----------------eCCCeEEEEECCCCcEE
Confidence            4455888898876643211   11 123577899999999 44441                 33568999998877644


Q ss_pred             -EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          195 -VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       195 -~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                       .+.........++++++++ ++++...++.|..|++...
T Consensus       228 ~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~  266 (410)
T 1vyh_C          228 KTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATK  266 (410)
T ss_dssp             EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC
T ss_pred             EEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCC
Confidence             3334444567889999998 5666667889999998643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.16  E-value=9.5e-10  Score=104.98  Aligned_cols=209  Identities=13%  Similarity=0.038  Sum_probs=134.3

Q ss_pred             CCceEEEcc-----CCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE-e-cC
Q 018242           35 GPESLAFDA-----LGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF-N-KT  106 (359)
Q Consensus        35 ~p~~i~~~~-----~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~-~-~~  106 (359)
                      .++ +..+.     ||+.+|+... +++|.++|+++.+...+-                  . .+....|+|+++ . |+
T Consensus        87 ~hh-~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii------------------~-ip~g~~phg~~~~~~p~  146 (595)
T 1fwx_A           87 LHH-VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL------------------E-IPNAKGIHGLRPQKWPR  146 (595)
T ss_dssp             BCC-EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE------------------E-CSSCCSEEEEEECCSSB
T ss_pred             CCc-cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEE------------------e-CCCCCCCcceeeeecCC
Confidence            444 55555     8888888654 578999999987533321                  1 122345899998 4 66


Q ss_pred             CCeEEEEeC-----------------C-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccc-
Q 018242          107 NGDLYIADA-----------------Y-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQR-  167 (359)
Q Consensus       107 ~g~l~v~~~-----------------~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~-  167 (359)
                      .+.+|+++.                 . +.+..+|.++.++..-... .    ..|..++++++|+++|++...+.-.. 
T Consensus       147 ~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V-g----g~pd~~~~spdGk~~~vt~~~se~~~~  221 (595)
T 1fwx_A          147 SNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-S----GNLDNCDADYEGKWAFSTSYNSEKGMT  221 (595)
T ss_dssp             CSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE-S----SCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred             CcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe-C----CCccceEECCCCCEEEEEecCcccCcc
Confidence            788888841                 1 1377889888765432221 1    15788999999999999964331100 


Q ss_pred             ------c--ccee--------ee---eecCCCceEEEEeCCC--CcE-EEEeCCCCCCceEEEccCCCEEEEEecCCCEE
Q 018242          168 ------R--NHIS--------VI---LSGDKTGRLMKYDPAT--KQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRI  225 (359)
Q Consensus       168 ------~--~~~~--------~~---~~~~~~g~v~~~d~~~--~~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i  225 (359)
                            .  .+..        +.   ......+.|..+|..+  ++. .........|.|+.++|||+++|+++...+++
T Consensus       222 i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~V  301 (595)
T 1fwx_A          222 LPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTV  301 (595)
T ss_dssp             HHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred             hhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeE
Confidence                  0  0000        00   0001124588999986  333 22233346899999999999999999999999


Q ss_pred             EEEEcCCC------CCcc-eeEeec--CCCCCCceEECCCCCEEEEEecCCC
Q 018242          226 LRYWLKTS------KAGT-IEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       226 ~~~~~~~~------~~~~-~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .+|+.+..      ++.. .....+  ++..|..+++|++|++|++..-++.
T Consensus       302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          302 TVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             EEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTE
T ss_pred             EEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCc
Confidence            99998632      1111 112223  4456999999999999998877665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.16  E-value=7.8e-09  Score=88.11  Aligned_cols=164  Identities=13%  Similarity=0.125  Sum_probs=113.1

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      +...++..+.-...++++++. ++ +|+.+ ..+.++++|+++.+.. +|.                      ....+.|
T Consensus        54 kv~~~~~l~~~~fgeGi~~~~-~~-ly~ltw~~~~v~v~D~~tl~~~~ti~----------------------~~~~Gwg  109 (243)
T 3mbr_X           54 RILQRAEVPPPYFGAGIVAWR-DR-LIQLTWRNHEGFVYDLATLTPRARFR----------------------YPGEGWA  109 (243)
T ss_dssp             CEEEEEECCTTCCEEEEEEET-TE-EEEEESSSSEEEEEETTTTEEEEEEE----------------------CSSCCCE
T ss_pred             CEEEEEeCCCCcceeEEEEeC-CE-EEEEEeeCCEEEEEECCcCcEEEEEe----------------------CCCCceE
Confidence            334467777666678888863 44 77655 4589999999886422 221                      1234566


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeec-CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          101 LCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ-SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      ++.  +++.||+++..+.|..+|+++.++...... ..+.+...+|.+... +|+ +|+....                 
T Consensus       110 lt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~-----------------  168 (243)
T 3mbr_X          110 LTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWL-----------------  168 (243)
T ss_dssp             EEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT-----------------
T ss_pred             Eee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECC-----------------
Confidence            664  478999998766799999998776433321 233455567777765 777 9988643                 


Q ss_pred             CceEEEEeCCCCcEEEEeC--------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          180 TGRLMKYDPATKQVTVLLG--------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~--------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      ...|.++|+.++++.....              ....+||||++|++++||+++-.=..++.+.+.
T Consensus       169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            3479999999998764321              113569999999999999998776778877654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.16  E-value=5.3e-09  Score=89.96  Aligned_cols=162  Identities=24%  Similarity=0.290  Sum_probs=111.0

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      +...++ +++-...++++++. ++ +|+.+ .++.++.+|+++.+.. +|.                      ......|
T Consensus        86 kv~~~~-l~~~~FgeGit~~g-~~-Ly~ltw~~~~v~V~D~~Tl~~~~ti~----------------------~~~eGwG  140 (268)
T 3nok_A           86 QPVWME-RLGNIFAEGLASDG-ER-LYQLTWTEGLLFTWSGMPPQRERTTR----------------------YSGEGWG  140 (268)
T ss_dssp             SCSEEE-ECTTCCEEEEEECS-SC-EEEEESSSCEEEEEETTTTEEEEEEE----------------------CSSCCCC
T ss_pred             cEEeEE-CCCCcceeEEEEeC-CE-EEEEEccCCEEEEEECCcCcEEEEEe----------------------CCCceeE
Confidence            334455 66555668888864 34 77665 4578999999886432 221                      1233567


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeec-CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          101 LCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ-SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      ++.+  ++.||+++..+.|..+|+++.++...... ..+.+...+|.|.+. +|+ ||+....                 
T Consensus       141 Lt~D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~-----------------  199 (268)
T 3nok_A          141 LCYW--NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWH-----------------  199 (268)
T ss_dssp             EEEE--TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETT-----------------
T ss_pred             EecC--CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECC-----------------
Confidence            7755  78999998666799999998876543221 233455577888776 787 9998643                 


Q ss_pred             CceEEEEeCCCCcEEEEeC--------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          180 TGRLMKYDPATKQVTVLLG--------------NLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~--------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ...|.++|++++++.....              ....+||||++|+++.||+++-.=..++.+.+
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            3479999999998764321              11357999999999999999876667776654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.15  E-value=4.5e-08  Score=88.31  Aligned_cols=156  Identities=12%  Similarity=0.075  Sum_probs=102.8

Q ss_pred             ccCCcceEEEEecCCCeEEEEeC-CCcEEEEeCCCCeEEEEeec--CCCccccccceEEEeCC----CCEEEEEeCCCcc
Q 018242           93 HICGRPLGLCFNKTNGDLYIADA-YFGLLKVGPEGGLATAVATQ--SEGIPFRFCNSLDIDQS----TGIIYFTDSSSQF  165 (359)
Q Consensus        93 ~~~~~p~gi~~~~~~g~l~v~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~d~~----g~~l~v~d~~~~~  165 (359)
                      .....|.+|++.+ +|.+||+.. .+.|++++.++++.+.+...  ........+.+|+++|+    |. ||++.+.   
T Consensus        29 ~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~-lYv~yt~---  103 (347)
T 3das_A           29 TGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHM-VYAYFTS---  103 (347)
T ss_dssp             CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCE-EEEEEEC---
T ss_pred             cCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCE-EEEEEec---
Confidence            4456799999999 899999987 55699998877766544321  11223457889999985    55 9997332   


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCC--------cEEEEeC-----CCCCCceEEEccCCCEEEEEec------------
Q 018242          166 QRRNHISVILSGDKTGRLMKYDPATK--------QVTVLLG-----NLSFPNGVALSEDGNYILLAET------------  220 (359)
Q Consensus       166 ~~~~~~~~~~~~~~~g~v~~~d~~~~--------~~~~~~~-----~~~~p~gia~~~d~~~l~v~~~------------  220 (359)
                                  .....|.++..+.+        ..+.+..     .......|+|++||+ ||++.-            
T Consensus       104 ------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~  170 (347)
T 3das_A          104 ------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRK  170 (347)
T ss_dssp             ------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTT
T ss_pred             ------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCC
Confidence                        11346777765431        1222221     123456799999996 899842            


Q ss_pred             -CCCEEEEEEcCCCC-----CcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242          221 -TSCRILRYWLKTSK-----AGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       221 -~~~~i~~~~~~~~~-----~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                       ..+.|+|++.++.-     ....+++.. +. -|.++++|++|+||++..+..
T Consensus       171 ~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~  223 (347)
T 3das_A          171 SLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQD  223 (347)
T ss_dssp             CSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSS
T ss_pred             CCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCC
Confidence             35789999876431     012234443 22 388999999999999998643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.15  E-value=1.1e-07  Score=82.15  Aligned_cols=202  Identities=9%  Similarity=0.054  Sum_probs=125.4

Q ss_pred             cCCcceEEEEecCCCeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242           94 ICGRPLGLCFNKTNGDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS  172 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~  172 (359)
                      ...++.||+++++++.||+. +....|+++|+. +++..... ..  ....+.+|+++++|+ +|+++-.          
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~--g~~D~EGIa~~~~g~-~~vs~E~----------   89 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LD--FVKDLETIEYIGDNQ-FVISDER----------   89 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CS--SCSSEEEEEECSTTE-EEEEETT----------
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cC--CCCChHHeEEeCCCE-EEEEECC----------
Confidence            33568899999978899986 444469999998 55433222 11  224678999999998 8888432          


Q ss_pred             eeeecCCCceEEEEeCCC-CcEE---EEeCC------CCCCceEEEccCCCEEEEEecCCC-EEEEEEcCCCCCcceeEe
Q 018242          173 VILSGDKTGRLMKYDPAT-KQVT---VLLGN------LSFPNGVALSEDGNYILLAETTSC-RILRYWLKTSKAGTIEIV  241 (359)
Q Consensus       173 ~~~~~~~~g~v~~~d~~~-~~~~---~~~~~------~~~p~gia~~~d~~~l~v~~~~~~-~i~~~~~~~~~~~~~~~~  241 (359)
                             .+.++.++... +...   .....      .....|+|+++++++||++..... .|+.++-.. ........
T Consensus        90 -------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~-~~~~l~i~  161 (255)
T 3qqz_A           90 -------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL-SSNELHIS  161 (255)
T ss_dssp             -------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT-CSSCCEEE
T ss_pred             -------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc-cCCceeee
Confidence                   23455554322 2211   11111      223479999999988999887765 788887110 01112222


Q ss_pred             ec------C-CCCCCceEECC-CCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECC
Q 018242          242 AQ------L-PGFPDNIKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISE  313 (359)
Q Consensus       242 ~~------~-~~~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (359)
                      ..      . -.-+.++++|+ .|++|+.+..+                                       ..++.+|.
T Consensus       162 ~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s---------------------------------------~~L~~~d~  202 (255)
T 3qqz_A          162 KDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES---------------------------------------RALQEVTL  202 (255)
T ss_dssp             ECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT---------------------------------------TEEEEECT
T ss_pred             cchhhccccccCCceeEEEcCCCCeEEEEECCC---------------------------------------CeEEEEcC
Confidence            11      1 11267899998 46788876543                                       35777888


Q ss_pred             CCCEEEEEEccCCc-----eeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          314 QGNVLEILEEIGRK-----MWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       314 ~g~~~~~~~~~~g~-----~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      +|+++..+.-..|.     .+..+-+++.+ +|+|||.+= .+.+++++..
T Consensus       203 ~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE-~n~~y~f~~~  252 (255)
T 3qqz_A          203 VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE-PNRFYRFTPQ  252 (255)
T ss_dssp             TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET-TTEEEEEEC-
T ss_pred             CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC-CceEEEEEec
Confidence            88876665533331     24566777766 789999974 5678877643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.15  E-value=1.2e-09  Score=99.88  Aligned_cols=236  Identities=6%  Similarity=-0.143  Sum_probs=134.8

Q ss_pred             CEEEEeeCCCCCCceEEEccCCCeeEEec----------CCCEEEEEEcCCcceE-EEeecCCCCCCCCCCccccccccc
Q 018242           24 GVVQYQIEGAIGPESLAFDALGEGPYTGV----------SDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKE   92 (359)
Q Consensus        24 ~~~~~~~~~~~~p~~i~~~~~G~~l~~~~----------~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   92 (359)
                      .+-+++.+.  .| +++++|||+.+|++.          .++.|..+|+.+.+.. ++..+...             .+ 
T Consensus        58 v~~~i~vG~--~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~-------------~~-  120 (368)
T 1mda_H           58 TLGHSLGAF--LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP-------------RF-  120 (368)
T ss_dssp             EEEEEEECT--TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC-------------SC-
T ss_pred             EEEEEeCCC--CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc-------------cc-
Confidence            344788884  68 999999999999986          2478999999987543 22110000             00 


Q ss_pred             ccCCcceEEEEecCCCeEEEEeCC--CcEEE--EeCCCCeEEEEeecCCCccccccce----EEEeCCCCEEEEEeCCC-
Q 018242           93 HICGRPLGLCFNKTNGDLYIADAY--FGLLK--VGPEGGLATAVATQSEGIPFRFCNS----LDIDQSTGIIYFTDSSS-  163 (359)
Q Consensus        93 ~~~~~p~gi~~~~~~g~l~v~~~~--~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~----l~~d~~g~~l~v~d~~~-  163 (359)
                      .....|++++++++++.+|+++..  +.+..  +|+.+  +..+..  .+.....+.+    ++..++|+.+++ +... 
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v--~~~~~~~p~g~~~~~~~~~dg~~~~v-d~~~~  195 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKS--ASCFHIHPGAAATHYLGSCPASLAAS-DLAAA  195 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEEC--SSCCCCEEEETTEEECCCCTTSCEEE-ECCSS
T ss_pred             ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEEC--CCceEEccCCCeEEEEEcCCCCEEEE-ECccc
Confidence            012468999999977889999864  34666  78766  333321  1100001111    334455553333 2221 


Q ss_pred             -ccccc-------------cce-----eeeeecCCCceEEEEeCCCCcEEEEeC----------CCCCCce---EEEccC
Q 018242          164 -QFQRR-------------NHI-----SVILSGDKTGRLMKYDPATKQVTVLLG----------NLSFPNG---VALSED  211 (359)
Q Consensus       164 -~~~~~-------------~~~-----~~~~~~~~~g~v~~~d~~~~~~~~~~~----------~~~~p~g---ia~~~d  211 (359)
                       ++...             ...     ..++-.+. +.|+.+|..++....+..          ....|.+   +++++|
T Consensus       196 ~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d  274 (368)
T 1mda_H          196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             cccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence             00000             000     00000011 567888876433222210          1123455   899999


Q ss_pred             CCEEEEEec-C-------CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEe-cCCCcccccccc-CCcc
Q 018242          212 GNYILLAET-T-------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH-SRRKGISKLVLS-FPWI  280 (359)
Q Consensus       212 ~~~l~v~~~-~-------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~-~~~~~~~~~~~~-~~~~  280 (359)
                      ++++|++.. .       .+.+.++|++..+.   ......+..|.+|+++++|+ +|+++. ..+.     +.+ +..+
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v---v~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~-----VsVID~~t  346 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQT---SGPISNGHDSDAIIAAQDGASDNYANSAGTEV-----LDIYDAAS  346 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCE---EECCEEEEEECEEEECCSSSCEEEEEETTTTE-----EEEEESSS
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCCeE---EEEEECCCCcceEEECCCCCEEEEEccCCCCe-----EEEEECCC
Confidence            999999865 2       35677999765421   11111334699999999996 999988 4554     444 4468


Q ss_pred             ceeeecCCcc
Q 018242          281 GNVLIKLPID  290 (359)
Q Consensus       281 g~~~~~~~~~  290 (359)
                      ++++++++.+
T Consensus       347 ~kvv~~I~vg  356 (368)
T 1mda_H          347 DQDQSSVELD  356 (368)
T ss_dssp             CEEEEECCCC
T ss_pred             CcEEEEEECC
Confidence            8888888765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.15  E-value=5.2e-08  Score=88.08  Aligned_cols=203  Identities=10%  Similarity=0.040  Sum_probs=126.6

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.+++++++|+++.++..++.|..||..+++...                    .+.........+++++++..+..+
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------------~~~~~~~~v~~~~~s~~~~~l~s~  115 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--------------------AIPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--------------------EEECSSSCEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--------------------EeecCCccEEEEEECCCCCEEEEE
Confidence            455689999999988899999999999987753221                    111222345678899944444445


Q ss_pred             eCCCcEEEEeCCCCe--EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          114 DAYFGLLKVGPEGGL--ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ...+.+..++..++.  ...... ..+ ....+..+.+.+++. +..+                  +..+.|..||..++
T Consensus       116 ~~d~~v~iw~~~~~~~~~~~~~~-~~~-h~~~v~~~~~~~~~~-l~s~------------------s~d~~i~~wd~~~~  174 (340)
T 1got_B          116 GLDNICSIYNLKTREGNVRVSRE-LAG-HTGYLSCCRFLDDNQ-IVTS------------------SGDTTCALWDIETG  174 (340)
T ss_dssp             ETTCEEEEEETTTCSBSCEEEEE-EEC-CSSCEEEEEEEETTE-EEEE------------------ETTSCEEEEETTTT
T ss_pred             eCCCeEEEEECccCCCcceeEEE-ecC-CCccEEEEEECCCCc-EEEE------------------ECCCcEEEEECCCC
Confidence            555557788876542  111111 011 112455677778776 6555                  23467889998877


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCcc
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGI  270 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~  270 (359)
                      +..... .+......++++|+++ ++++...++.|..||+....  ....+.........+++.++|+++++....+.  
T Consensus       175 ~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~--  249 (340)
T 1got_B          175 QQTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDDAT--  249 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred             cEEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc--
Confidence            654433 3334567899999988 56677788899999986432  12223222333567899999987776655554  


Q ss_pred             ccccccCCc-cceeee
Q 018242          271 SKLVLSFPW-IGNVLI  285 (359)
Q Consensus       271 ~~~~~~~~~-~g~~~~  285 (359)
                         +..++. .++.+.
T Consensus       250 ---v~iwd~~~~~~~~  262 (340)
T 1got_B          250 ---CRLFDLRADQELM  262 (340)
T ss_dssp             ---EEEEETTTTEEEE
T ss_pred             ---EEEEECCCCcEEE
Confidence               555543 344433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.14  E-value=3.8e-08  Score=87.50  Aligned_cols=216  Identities=8%  Similarity=0.045  Sum_probs=129.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.+++++|+|..+.++..++.|..||..+++...                    .+.........+.+.+++..+..+
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~~l~s~   73 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------SIQVTETPVRAGKFIARKNWIIVG   73 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCSSCEEEEEEEGGGTEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------------EeeccCCcEEEEEEeCCCCEEEEE
Confidence            356799999999988889999999999998763221                    111222334678899855555556


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC-c
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK-Q  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~  192 (359)
                      ...+.|..+|.++++.......    ....+..++++|+++ +.++-                 +..+.|..||.+++ .
T Consensus        74 s~d~~i~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~sg-----------------s~D~~v~lWd~~~~~~  131 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKP-YVLSG-----------------SDDLTVKLWNWENNWA  131 (304)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSS-EEEEE-----------------ETTSCEEEEEGGGTTE
T ss_pred             CCCCEEEEEECCCCcEEEEEeC----CCCcEEEEEEcCCCC-EEEEE-----------------CCCCeEEEEECCCCcc
Confidence            6555688899988764332221    123577899999999 55541                 23567888887655 3


Q ss_pred             EEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEEC--CCCCEEEEEecCCC
Q 018242          193 VTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRS--PRGGFWVGIHSRRK  268 (359)
Q Consensus       193 ~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d--~~G~lwv~~~~~~~  268 (359)
                      ... +..+......++++|++..++++...++.|..||+......  ..+.. .......+.+.  +++.+.++....+.
T Consensus       132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~  209 (304)
T 2ynn_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (304)
T ss_dssp             EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCEEEEEECCSTTCCEEEEEETTSE
T ss_pred             hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc--ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe
Confidence            322 33334456789999843336777778899999998543211  11111 11111234444  36666665555443


Q ss_pred             ccccccccCC-ccceeeecCCccceeeeeec
Q 018242          269 GISKLVLSFP-WIGNVLIKLPIDIVKIHSSL  298 (359)
Q Consensus       269 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~  298 (359)
                           +..++ ..++.+..+..+...+..+.
T Consensus       210 -----i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          210 -----IKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             -----EEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             -----EEEEeCCCCccceeeCCCCCCEEEEE
Confidence                 55554 35555555544333333333

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.13  E-value=8.8e-09  Score=103.00  Aligned_cols=163  Identities=12%  Similarity=0.021  Sum_probs=97.2

Q ss_pred             CCCceEEEccCCCeeEEecC-CC-----EEEEEEcCCcceEEEeecCCCCCC-C-CCCcccccccccccC--CcceEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVS-DG-----RIIKWHQDQRRWLHFARTSPNRDG-C-EGAYEYDHAAKEHIC--GRPLGLCF  103 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~-~~-----~i~~~d~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~--~~p~gi~~  103 (359)
                      ..+.+++++|||+.+++... ++     .|+.||..+++...........+. . ....+....+.....  .....+++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            35779999999997776665 66     899999988765544321100000 0 000000000000000  11356889


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCC---eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          104 NKTNGDLYIADAYFGLLKVGPEGG---LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       104 ~~~~g~l~v~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +|++..|+++.. +.|+.++.+++   +.+.+..     ....+..++++|||++|.++.                   .
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~-------------------~  171 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIR-------------------G  171 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEE-------------------T
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEe-------------------C
Confidence            994455666554 67999999887   5443321     113467899999999665552                   2


Q ss_pred             ceEEEEeCCCCcEEEEeCCCCC-----------------CceEEEccCCCEEEEEecC
Q 018242          181 GRLMKYDPATKQVTVLLGNLSF-----------------PNGVALSEDGNYILLAETT  221 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~~-----------------p~gia~~~d~~~l~v~~~~  221 (359)
                      +.|+.+|.++++...+......                 +.+++++|||+.|+++...
T Consensus       172 ~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d  229 (741)
T 2ecf_A          172 RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARID  229 (741)
T ss_dssp             TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEE
T ss_pred             CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEc
Confidence            3699999988776654332211                 4779999999988777543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.13  E-value=5e-08  Score=94.81  Aligned_cols=279  Identities=11%  Similarity=0.010  Sum_probs=159.9

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCc----ceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEec--
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR----RWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNK--  105 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~--  105 (359)
                      ...+.+++++|+|+++.++. ++.|..||..++    +...                    .+...... ...+++++  
T Consensus        18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~--------------------~~~~h~~~~v~~~~~sp~~   76 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV--------------------QFTGHGSSVVTTVKFSPIK   76 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE--------------------EECTTTTSCEEEEEECSST
T ss_pred             cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce--------------------EEecCCCceEEEEEECcCC
Confidence            34677999999999666665 689999998865    2211                    22233345 67899998  


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCC------eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          106 TNGDLYIADAYFGLLKVGPEGG------LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      ++..|+.+...+.|..++..++      ..+.... ... ....+..++++++|+++.++...              ...
T Consensus        77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~s~~~~~l~~~~~~--------------~~~  140 (615)
T 1pgu_A           77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE-FQV-LAGPISDISWDFEGRRLCVVGEG--------------RDN  140 (615)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE-EEC-CSSCEEEEEECTTSSEEEEEECC--------------SSC
T ss_pred             CCCEEEEecCCCEEEEEeCCCCcccccccccccch-hhc-ccccEEEEEEeCCCCEEEEeccC--------------CCC
Confidence            7777777766556888888644      2222111 111 12357789999999955555221              012


Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---CCCceEECCC
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPR  256 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~  256 (359)
                      .+.|+.+|.. .....+.........++++|+++.++++...++.|..|++...+  ....+.....   ....++++++
T Consensus       141 ~~~v~~~d~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~  217 (615)
T 1pgu_A          141 FGVFISWDSG-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPD  217 (615)
T ss_dssp             SEEEEETTTC-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECST
T ss_pred             ccEEEEEECC-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECCC
Confidence            3578888843 34444444445567899999998667777788999999965431  1112222222   3456899999


Q ss_pred             -CCEEEEEecCCCccccccccCC-ccceeeecC-C---ccceeeeeecccccCc-------ceEEEEECCC-CCEEEEEE
Q 018242          257 -GGFWVGIHSRRKGISKLVLSFP-WIGNVLIKL-P---IDIVKIHSSLVKLSGN-------GGMAMRISEQ-GNVLEILE  322 (359)
Q Consensus       257 -G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~-~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~-g~~~~~~~  322 (359)
                       |++.++....+.     +..++ ..++.+..+ .   .....+..+.+. ...       .+.+..++.+ ++.+..+.
T Consensus       218 ~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          218 SGEFVITVGSDRK-----ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             TCCEEEEEETTCC-----EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEeCCCe-----EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence             886665554443     55555 466766666 3   333444444443 222       0223333422 33444443


Q ss_pred             ccCCceeeceEEEE-EeCCEEEEecCCCCeEEEEcCC
Q 018242          323 EIGRKMWRSISEVE-EKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       323 ~~~g~~~~~~~~~~-~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                      .........+..+. ..+..+..++. +..|.++++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~d~~  327 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYELG  327 (615)
T ss_dssp             CCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEETT
T ss_pred             CCCCcccCceeEEEeCCCCeEEEEEC-CCCEEEEECC
Confidence            32111112222222 34666666665 6667777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.12  E-value=4.7e-08  Score=91.10  Aligned_cols=177  Identities=11%  Similarity=0.016  Sum_probs=112.0

Q ss_pred             CCCeeEEecC--C---CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-
Q 018242           44 LGEGPYTGVS--D---GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-  117 (359)
Q Consensus        44 ~G~~l~~~~~--~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-  117 (359)
                      .+++++++..  +   +.|+.||.++...+.+.                     ........++++|++..|+.+...+ 
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~---------------------~~~~~v~~~~~Spdg~~la~~s~~~~  201 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH---------------------RSPQPLMSPAWSPDGSKLAYVTFESG  201 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE---------------------EESSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEe---------------------CCCCcceeeEEcCCCCEEEEEEecCC
Confidence            3454555543  2   68999998865433332                     2223467889999555566655443 


Q ss_pred             --cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          118 --GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       118 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                        .|+.+|.++++...+...     ...+..++++|||++|+++...               .....|+.+|..+++...
T Consensus       202 ~~~i~~~d~~tg~~~~l~~~-----~~~~~~~~~spdg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~  261 (415)
T 2hqs_A          202 RSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSK---------------TGSLNLYVMDLASGQIRQ  261 (415)
T ss_dssp             SCEEEEEETTTCCEEEEECC-----SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTTCCEEE
T ss_pred             CcEEEEEECCCCcEEEeecC-----CCcccCEEEcCCCCEEEEEEec---------------CCCceEEEEECCCCCEEe
Confidence              599999998876654321     1246688999999966655321               123469999998887766


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEE-EEEe
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW-VGIH  264 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-v~~~  264 (359)
                      +.........++|+|||+.++++...++  .|+.+++.....   ..+.........++++++|+.. ++..
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCCEEEEEEC
Confidence            5444445678999999998777764433  799998765422   2221122223458899999744 4443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.12  E-value=4.7e-09  Score=95.77  Aligned_cols=208  Identities=12%  Similarity=0.112  Sum_probs=116.4

Q ss_pred             CCCCceEEEccC---CCeeEEecC--------CCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccc-ccc---ccC
Q 018242           33 AIGPESLAFDAL---GEGPYTGVS--------DGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHA-AKE---HIC   95 (359)
Q Consensus        33 ~~~p~~i~~~~~---G~~l~~~~~--------~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~   95 (359)
                      ..+|.+|+++|+   +..+|++..        ..+|.+++.+.+  .+.....               ++ .+.   ...
T Consensus        65 ~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~---------------i~~~~p~~~~~~  129 (353)
T 2g8s_A           65 QGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRT---------------VFRQMPKLSTGN  129 (353)
T ss_dssp             TCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEE---------------EEECSSCCBSSS
T ss_pred             CCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEE---------------EEEECCCCCCCc
Confidence            346789999995   334776642        247888876532  1111100               00 011   122


Q ss_pred             CcceEEEEecCCCeEEEEeCC--------------CcEEEEeCCCCe-------------EEEEeecCCCccccccceEE
Q 018242           96 GRPLGLCFNKTNGDLYIADAY--------------FGLLKVGPEGGL-------------ATAVATQSEGIPFRFCNSLD  148 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~--------------~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~  148 (359)
                      +.+.+|++++ +|.||++...              +.|+|+++++..             .+.+.     ..+..|.+++
T Consensus       130 h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-----~G~rnp~gl~  203 (353)
T 2g8s_A          130 HFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-----YGIRNPQGMA  203 (353)
T ss_dssp             CCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-----ECCSEEEEEE
T ss_pred             ccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEE-----EcCcCccceE
Confidence            4467899999 8899999632              259999988641             11111     1345799999


Q ss_pred             EeC-CCCEEEEEeCCCccccccceeeeeecCCCce--EE---EEeC----------CCCcEE--EEeCCCCCCceEEEcc
Q 018242          149 IDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGR--LM---KYDP----------ATKQVT--VLLGNLSFPNGVALSE  210 (359)
Q Consensus       149 ~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~--v~---~~d~----------~~~~~~--~~~~~~~~p~gia~~~  210 (359)
                      +|+ +|+ ||+++.+.+.  .+....+..+...|-  ..   .++.          ..+...  ........|.|+++..
T Consensus       204 ~d~~~g~-l~~~d~g~~~--~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~  280 (353)
T 2g8s_A          204 MNPWSNA-LWLNEHGPRG--GDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYN  280 (353)
T ss_dssp             EETTTTE-EEEEEECSBS--CEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEEC
T ss_pred             EECCCCC-EEEEecCCCC--CcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEEC
Confidence            999 677 9999876321  000000000000000  00   0000          000000  0112224678899874


Q ss_pred             C------CCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEEEEe
Q 018242          211 D------GNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       211 d------~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      .      ...+|+++...++|+++++++.+....+.+. .....|.+++++++|.||+++.
T Consensus       281 g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          281 SDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             CSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             CccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            2      1359999999999999998753222222232 2345789999999999999865

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.12  E-value=1.7e-07  Score=86.27  Aligned_cols=277  Identities=11%  Similarity=-0.014  Sum_probs=149.6

Q ss_pred             CCCceEEEccCCC-eeEEecCCCEEEEEEc----CCcce-------EEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           34 IGPESLAFDALGE-GPYTGVSDGRIIKWHQ----DQRRW-------LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        34 ~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ....+++++|+|+ +++++..++.|..|+.    .+++.       ..+..+  ...  .       ............+
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~-------~~~~~~~~~v~~~  114 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP--FAL--S-------ASSGKTTNQVTCL  114 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC--CCC--C-------------CBCEEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc--ccc--c-------ccccCCCCceEEE
Confidence            4677999999999 8999999999999999    76541       111100  000  0       0000112346789


Q ss_pred             EEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          102 CFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       102 ~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                      ++++++..|+++...+.|..++..+.....+..     ....+..+++++++++++.+                  ...+
T Consensus       115 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~------------------~~d~  171 (425)
T 1r5m_A          115 AWSHDGNSIVTGVENGELRLWNKTGALLNVLNF-----HRAPIVSVKWNKDGTHIISM------------------DVEN  171 (425)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSCEEEEECC-----CCSCEEEEEECTTSSEEEEE------------------ETTC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccC-----CCccEEEEEECCCCCEEEEE------------------ecCC
Confidence            999944455555655568888965554443321     12357789999999955554                  2245


Q ss_pred             eEEEEeCCCCcEEEEeCC-CCC---------------CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC
Q 018242          182 RLMKYDPATKQVTVLLGN-LSF---------------PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP  245 (359)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~-~~~---------------p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~  245 (359)
                      .|..||..+++....... ...               ...+++.+++  .+++...++.|..|++.....  ...+....
T Consensus       172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~--~~~~~~~~  247 (425)
T 1r5m_A          172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP--TGKLIGHH  247 (425)
T ss_dssp             CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC--SEEECCCS
T ss_pred             eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce--eeeeccCC
Confidence            788888877655433221 111               5678888876  356666778999999865422  12222222


Q ss_pred             CCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCccceeeeeecccc-------cCcceEEEEECCC-CC
Q 018242          246 GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKL-------SGNGGMAMRISEQ-GN  316 (359)
Q Consensus       246 ~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-g~  316 (359)
                      .....++++++|++.++....+.     +..++ ..++....+......+..+.+..       ..+ ..+..++.+ +.
T Consensus       248 ~~i~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~  321 (425)
T 1r5m_A          248 GPISVLEFNDTNKLLLSASDDGT-----LRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMD-GSVRLWSLKQNT  321 (425)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSC-----EEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETT-SEEEEEETTTTE
T ss_pred             CceEEEEECCCCCEEEEEcCCCE-----EEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCC-CcEEEEECCCCc
Confidence            33456888999986665554443     45554 34444444433222333332221       111 233344432 33


Q ss_pred             EEEEEEccCCceeeceEEEEEe-CCEEEEecCCCCeEEEEcCC
Q 018242          317 VLEILEEIGRKMWRSISEVEEK-DGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       317 ~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig~~~~~~l~~~~~~  358 (359)
                      .+..+....    ..+..+... ++++++....+..|.++++.
T Consensus       322 ~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          322 LLALSIVDG----VPIFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEEECTT----CCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EeEecccCC----ccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            333333221    133344433 44444444446678887753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.11  E-value=9.5e-08  Score=86.32  Aligned_cols=189  Identities=13%  Similarity=0.028  Sum_probs=124.0

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...+++++|+|+.+.++..++.+..|+..+.+  .....                  .+.........+.+.+ ++.++.
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~-~~~l~s  159 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR------------------ELAGHTGYLSCCRFLD-DNQIVT  159 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE------------------EEECCSSCEEEEEEEE-TTEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE------------------EecCCCccEEEEEECC-CCcEEE
Confidence            34578899999988888999999999987642  11110                  1122223456677887 778777


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      +...+.|..+|..+++......   + ....+..++++|+++ ++++-                 +..+.|..||..++.
T Consensus       160 ~s~d~~i~~wd~~~~~~~~~~~---~-h~~~v~~~~~~~~~~-~l~sg-----------------~~d~~v~~wd~~~~~  217 (340)
T 1got_B          160 SSGDTTCALWDIETGQQTTTFT---G-HTGDVMSLSLAPDTR-LFVSG-----------------ACDASAKLWDVREGM  217 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEEC---C-CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEETTTCS
T ss_pred             EECCCcEEEEECCCCcEEEEEc---C-CCCceEEEEECCCCC-EEEEE-----------------eCCCcEEEEECCCCe
Confidence            7766668899998886543222   1 123567899999999 66652                 235678899987766


Q ss_pred             EEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecCC
Q 018242          193 VTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       193 ~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .... .........++++|+++. +++...++.|..||+....  ....+..  .......++++++|++.++....+
T Consensus       218 ~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          218 CRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEcCCcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence            5433 334445688999999984 5566678899999986432  1111211  111234578999998777665544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.11  E-value=1.8e-08  Score=92.15  Aligned_cols=198  Identities=10%  Similarity=-0.028  Sum_probs=108.5

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccc
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEH   93 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (359)
                      +-+++.+  ..|+ ++++|||+.+|++..          .+.|..||..+.+... +..+...              ...
T Consensus        72 ~~~I~vG--~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~--------------r~~  134 (386)
T 3sjl_D           72 IGMIDGG--FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP--------------RFL  134 (386)
T ss_dssp             EEEEEEC--SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--------------CCC
T ss_pred             EEEEECC--CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc--------------ccc
Confidence            3367776  4686 999999999998762          3579999998875432 2110000              001


Q ss_pred             cCCcceEEEEecCCCeEEEEeC--CCcEEEEeCCCCeEEEEeecCCCccccccce----EEEeCCCCEEEEEeCCCcccc
Q 018242           94 ICGRPLGLCFNKTNGDLYIADA--YFGLLKVGPEGGLATAVATQSEGIPFRFCNS----LDIDQSTGIIYFTDSSSQFQR  167 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~d~~g~~l~v~d~~~~~~~  167 (359)
                      ....|.++++++++..+|+++.  .+.|..+|..++++...... ++.....|.+    ++..+||+.+|++ ..     
T Consensus       135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~g~~~~~P~g~~~~~~~~~DG~~~~v~-~~-----  207 (386)
T 3sjl_D          135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-PDCYHIFPTAPDTFFMHCRDGSLAKVA-FG-----  207 (386)
T ss_dssp             BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CSEEEEEEEETTEEEEEETTSCEEEEE-CC-----
T ss_pred             cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-CCcceeecCCCceeEEECCCCCEEEEE-CC-----
Confidence            1236889999997788999985  35699999999886543321 1111112222    3566777744444 11     


Q ss_pred             ccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCC--ceEEEc-cCCCEEEEEecCCCEEEEEEcCCCCCc---ceeEe
Q 018242          168 RNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP--NGVALS-EDGNYILLAETTSCRILRYWLKTSKAG---TIEIV  241 (359)
Q Consensus       168 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p--~gia~~-~d~~~l~v~~~~~~~i~~~~~~~~~~~---~~~~~  241 (359)
                                 ..+.+..  ..+   ..+ .....|  +..+|+ ++|+.+|++.  +++++.+|..++...   ....+
T Consensus       208 -----------~~g~v~~--~~~---~~~-~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~  268 (386)
T 3sjl_D          208 -----------TEGTPEI--THT---EVF-HPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEAL  268 (386)
T ss_dssp             -----------SSSCCEE--EEC---CCC-SCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESS
T ss_pred             -----------CCCeEEE--eec---cee-ccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceecc
Confidence                       1122211  000   001 001111  223554 6776555543  678999998654321   11111


Q ss_pred             ec----CCCCC---CceEECCCC-CEEEEEec
Q 018242          242 AQ----LPGFP---DNIKRSPRG-GFWVGIHS  265 (359)
Q Consensus       242 ~~----~~~~p---~~i~~d~~G-~lwv~~~~  265 (359)
                      ..    ..-.|   ..+++++++ ++|++...
T Consensus       269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~  300 (386)
T 3sjl_D          269 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQ  300 (386)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ccccccccccCCCcceeeECCCCCeEEEEecc
Confidence            11    11123   348888876 59998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.11  E-value=1.7e-07  Score=84.91  Aligned_cols=196  Identities=13%  Similarity=0.031  Sum_probs=118.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-..++++|+|+++.++..++.|..||..++++.....                 ...........+++++++..|..+.
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~-----------------~~~~h~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-----------------LSEGHQRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE-----------------ECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee-----------------eccccCCcEEEEEECCCCCEEEEEE
Confidence            34589999999988888999999999988764321110                 1112223467899999444455555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-E
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-V  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~  193 (359)
                      ..+.+..++..++..+.+.. ..+ ....+..++++|+|+ +.++-                 +..+.|..+|..++. .
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~-~~~-h~~~v~~v~~sp~~~-~l~s~-----------------s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTT-LEG-HENEVKSVAWAPSGN-LLATC-----------------SRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEE-ECC-CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEEECTTSCE
T ss_pred             CCCcEEEEEccCCCeEEEEE-ccC-CCCCceEEEEeCCCC-EEEEE-----------------ECCCeEEEEECCCCCCe
Confidence            55557778877665432221 111 123577899999999 54441                 234567777765432 1


Q ss_pred             E---EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          194 T---VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       194 ~---~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .   .+.........++++|+++. +++...++.|..|+...........+.........++++++|++.++....+.
T Consensus       141 ~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          141 ECVSVLNSHTQDVKHVVWHPSQEL-LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             EEEEEECCCCSCEEEEEECSSSSC-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEecCcCCCeEEEEECCCCCE-EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            1   22233344678999999984 55566778899998754321111112222233456899999987765555443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.09  E-value=8.5e-08  Score=88.38  Aligned_cols=217  Identities=12%  Similarity=0.060  Sum_probs=132.4

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...+++++++|++++++..++.|..||..+.....+                     .........+++++++..++.+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------------------~~~~~~v~~~~~~~~~~~l~~~~  168 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVL---------------------NFHRAPIVSVKWNKDGTHIISMD  168 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE---------------------CCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeec---------------------cCCCccEEEEEECCCCCEEEEEe
Confidence            456899999999888999999999999554422222                     22234467899999555566666


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCc-----------cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGI-----------PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..+.|..++..+++...........           ....+..+.+.+++. ++++                  ...+.|
T Consensus       169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------~~~g~i  229 (425)
T 1r5m_A          169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP------------------GPKGAI  229 (425)
T ss_dssp             TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEE------------------CGGGCE
T ss_pred             cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE------------------cCCCeE
Confidence            6666899999887654332211100           001166788888876 6655                  335679


Q ss_pred             EEEeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242          184 MKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  262 (359)
Q Consensus       184 ~~~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  262 (359)
                      ..+|..+++... +.........++++++++.++ +...++.|..|++.....  ...+.........+++.++| ++++
T Consensus       230 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~  305 (425)
T 1r5m_A          230 FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL-SASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVIS  305 (425)
T ss_dssp             EEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE-EEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEE
T ss_pred             EEEEcCCCceeeeeccCCCceEEEEECCCCCEEE-EEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EEEE
Confidence            999987654433 223334457899999998544 455678899999764321  22222223334668888888 4444


Q ss_pred             EecCCCccccccccCC-ccceeeecCCccceeeeeeccc
Q 018242          263 IHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVK  300 (359)
Q Consensus       263 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~  300 (359)
                      ....+.     +..++ ..++.+..+......+..+.+.
T Consensus       306 ~~~d~~-----i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          306 CSMDGS-----VRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EETTSE-----EEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EeCCCc-----EEEEECCCCcEeEecccCCccEEEEEEc
Confidence            444443     55554 3566655554433344444443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.08  E-value=2.8e-08  Score=91.72  Aligned_cols=222  Identities=11%  Similarity=0.021  Sum_probs=132.9

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCc--ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...+++++++|++++++..++.|..||..+.  ......                  .+.........++++++++++++
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~~l~  130 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA------------------RFSNHSSSVKTVKFNAKQDNVLA  130 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEE------------------ECCCSSSCCCEEEECSSSTTBEE
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchh------------------hccCCccceEEEEEcCCCCCEEE
Confidence            3458999999998888888999999998761  010110                  22223345678999995355555


Q ss_pred             E-eCCCcEEEEeCCCCe------EEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          113 A-DAYFGLLKVGPEGGL------ATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       113 ~-~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      + ...+.|..+|..+++      ......... .....+..++++++ ++ ++++-                 ...+.|.
T Consensus       131 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-~l~~~-----------------~~dg~v~  191 (416)
T 2pm9_A          131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEVISLAWNQSLAH-VFASA-----------------GSSNFAS  191 (416)
T ss_dssp             EECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCCCCEEEECSSCTT-EEEEE-----------------SSSSCEE
T ss_pred             EEcCCCeEEEEECCCCcccccccccccccccc-CCCCCeeEEEeCCCCCc-EEEEE-----------------cCCCCEE
Confidence            4 444458888988764      111111011 12235778999999 56 55552                 2356799


Q ss_pred             EEeCCCCcEEEEeCC-------CCCCceEEEccCCCEEEEEecCCC---EEEEEEcCCCCCcceeEee-cCCCCCCceEE
Q 018242          185 KYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVA-QLPGFPDNIKR  253 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~-------~~~p~gia~~~d~~~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~  253 (359)
                      .||..+++.......       ......++++|++..++++...++   .|..|++...... ...+. ........+++
T Consensus       192 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~  270 (416)
T 2pm9_A          192 IWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDW  270 (416)
T ss_dssp             EEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEE
T ss_pred             EEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEe
Confidence            999887665443322       344678999999855666666776   8999998653211 11222 12223456888


Q ss_pred             CC-CCCEEEEEecCCCccccccccCC-ccceeeecCCccceeeeeecc
Q 018242          254 SP-RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       254 d~-~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~  299 (359)
                      ++ +|++.++....+.     +..++ ..++.+..+......+..+.+
T Consensus       271 s~~~~~~l~s~~~dg~-----v~~wd~~~~~~~~~~~~~~~~v~~~~~  313 (416)
T 2pm9_A          271 CHQDEHLLLSSGRDNT-----VLLWNPESAEQLSQFPARGNWCFKTKF  313 (416)
T ss_dssp             CSSCSSCEEEEESSSE-----EEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred             CCCCCCeEEEEeCCCC-----EEEeeCCCCccceeecCCCCceEEEEE
Confidence            88 7876665554443     55554 356665555443333333333

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.08  E-value=6.5e-08  Score=88.86  Aligned_cols=200  Identities=12%  Similarity=-0.008  Sum_probs=115.2

Q ss_pred             CCCceEEEccCCCeeEEecC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           34 IGPESLAFDALGEGPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      ..|++++++|||+.+|++..  .+.|..+| .+++...                    .+.   ..+.++.+.+.+.+.|
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~--------------------~~i---~~~~~~~~~~~~~~~~  180 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD--------------------QLL---SSPTCYHIHPGAPSTF  180 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe--------------------EEc---CCCceEEEEeCCCceE
Confidence            56999999999999998864  47899999 8774321                    100   1122344455456677


Q ss_pred             EEeCCC-cEEEEeCCCCeEEEEeec----CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          112 IADAYF-GLLKVGPEGGLATAVATQ----SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       112 v~~~~~-~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++...+ .+..++. +++.......    ....+  ......+.+++..+|+..                  ..+.++.+
T Consensus       181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~------------------~~~~v~vi  239 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN--LLTQPAQANKSGRIVWPV------------------YSGKILQA  239 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc--eeecceeEecCCEEEEEc------------------CCceEEEE
Confidence            765443 4777888 6554321110    00001  011233444444355552                  13468888


Q ss_pred             eCCCCcEEEEe----------CCCCCCce---EEEccCCCEEEEEecC---------CCEEEEEEcCCCCCcceeEeecC
Q 018242          187 DPATKQVTVLL----------GNLSFPNG---VALSEDGNYILLAETT---------SCRILRYWLKTSKAGTIEIVAQL  244 (359)
Q Consensus       187 d~~~~~~~~~~----------~~~~~p~g---ia~~~d~~~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~  244 (359)
                      |..++..+...          .....|.+   +++++|++.+|++...         .+.|+++|.+..+   .......
T Consensus       240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~---vv~~i~~  316 (373)
T 2mad_H          240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---TSSQISL  316 (373)
T ss_pred             eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE---EEEEEEC
Confidence            87644322111          01123555   8899999999998652         4689999975432   1111235


Q ss_pred             CCCCCceEECCCCC-EEEEEe-cCCCccccccccCC-ccceeeec
Q 018242          245 PGFPDNIKRSPRGG-FWVGIH-SRRKGISKLVLSFP-WIGNVLIK  286 (359)
Q Consensus       245 ~~~p~~i~~d~~G~-lwv~~~-~~~~~~~~~~~~~~-~~g~~~~~  286 (359)
                      ++.|.++++++||+ +++++. ..+.     +.+++ .++++++.
T Consensus       317 g~~p~~i~~s~Dg~~~l~v~~~~~~~-----V~ViD~~t~~vv~~  356 (373)
T 2mad_H          317 GHDVDAISVAQDGGPDLYALSAGTEV-----LHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCcCeEEECCCCCeEEEEEcCCCCe-----EEEEECCCCCEEee
Confidence            55799999999998 555554 4443     44443 46676666

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.07  E-value=1.1e-07  Score=87.83  Aligned_cols=152  Identities=13%  Similarity=0.107  Sum_probs=102.4

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+++++++|++++++..++.|..||..+++...                    .+.........+++++++..|+.+...
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--------------------ILQGHEQDIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------------------EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--------------------EEccCCCCEEEEEEcCCCCEEEEecCC
Confidence            478999999988888999999999998764322                    122233446789999955555555555


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      +.|..+|..+++.......     ...+..+++.+ +|+ ++++-                 ...+.|..||..++....
T Consensus       187 ~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~-~l~~~-----------------s~d~~v~iwd~~~~~~~~  243 (393)
T 1erj_A          187 RTVRIWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGK-YIAAG-----------------SLDRAVRVWDSETGFLVE  243 (393)
T ss_dssp             SEEEEEETTTTEEEEEEEC-----SSCEEEEEECSTTCC-EEEEE-----------------ETTSCEEEEETTTCCEEE
T ss_pred             CcEEEEECCCCeeEEEEEc-----CCCcEEEEEECCCCC-EEEEE-----------------cCCCcEEEEECCCCcEEE
Confidence            5688899988875433221     12456788888 788 44441                 235678889988765443


Q ss_pred             Ee--------CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          196 LL--------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       196 ~~--------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ..        ........++++|+++. +++...++.|..|++..
T Consensus       244 ~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          244 RLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC--
T ss_pred             eecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECCC
Confidence            22        12234568999999985 55666788999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.06  E-value=8.1e-07  Score=82.00  Aligned_cols=183  Identities=11%  Similarity=-0.012  Sum_probs=121.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++++|+.++++..++.|..||..+++...                    .+.........+.++  +..++.+
T Consensus       135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------~~~~~~~~v~~~~~~--~~~l~~~  192 (401)
T 4aez_A          135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR--------------------TMAGHQARVGCLSWN--RHVLSSG  192 (401)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------EECCCSSCEEEEEEE--TTEEEEE
T ss_pred             CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--------------------EecCCCCceEEEEEC--CCEEEEE
Confidence            455689999999988899999999999988764322                    122222345567774  4566666


Q ss_pred             eCCCcEEEEeCCC-Ce-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          114 DAYFGLLKVGPEG-GL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       114 ~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ...+.|..+|... +. ...+..     ....+..+.++++|+++..+                  +..+.|..||..++
T Consensus       193 ~~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~------------------~~d~~v~iwd~~~~  249 (401)
T 4aez_A          193 SRSGAIHHHDVRIANHQIGTLQG-----HSSEVCGLAWRSDGLQLASG------------------GNDNVVQIWDARSS  249 (401)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEC-----CSSCEEEEEECTTSSEEEEE------------------ETTSCEEEEETTCS
T ss_pred             cCCCCEEEEecccCcceeeEEcC-----CCCCeeEEEEcCCCCEEEEE------------------eCCCeEEEccCCCC
Confidence            6666688889873 32 222211     12356789999999944443                  23467999998876


Q ss_pred             cEEEE-eCCCCCCceEEEccCCCEEEEEec--CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242          192 QVTVL-LGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       192 ~~~~~-~~~~~~p~gia~~~d~~~l~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      +.... .........++++|++..++++..  .++.|..|++.....  ...+ ........++++++|+..++..
T Consensus       250 ~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR--VNTV-DAGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE--EEEE-ECSSCEEEEEECSSSSEEEEEE
T ss_pred             CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE--EEEE-eCCCcEEEEEECCCCCeEEEEe
Confidence            55433 334455789999998877777754  688999999865321  1222 2233356789999998777654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.06  E-value=1.6e-08  Score=96.65  Aligned_cols=194  Identities=9%  Similarity=-0.022  Sum_probs=123.9

Q ss_pred             EeeCCCCCCceEEEc--cCCCeeEEec------------------CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccc
Q 018242           28 YQIEGAIGPESLAFD--ALGEGPYTGV------------------SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYD   87 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~--~~G~~l~~~~------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (359)
                      +.++...+|+++++.  |+++.+|++.                  .++.+..+|.++.+...                  
T Consensus       128 i~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~------------------  189 (595)
T 1fwx_A          128 LEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW------------------  189 (595)
T ss_dssp             EECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE------------------
T ss_pred             EeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE------------------
Confidence            345555789999984  8998888884                  22577788888764321                  


Q ss_pred             cccccccCCcceEEEEecCCCeEEEEeCCC--------------------------------------cEEEEeCCC--C
Q 018242           88 HAAKEHICGRPLGLCFNKTNGDLYIADAYF--------------------------------------GLLKVGPEG--G  127 (359)
Q Consensus        88 ~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~--------------------------------------~i~~~~~~~--~  127 (359)
                        + ....++|.+++++++++.+|+++...                                      ++..+|..+  +
T Consensus       190 --q-I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~  266 (595)
T 1fwx_A          190 --Q-VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS  266 (595)
T ss_dssp             --E-EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred             --E-EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence              1 12224688899998777788876332                                      244445443  2


Q ss_pred             eE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc------------EE
Q 018242          128 LA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ------------VT  194 (359)
Q Consensus       128 ~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~------------~~  194 (359)
                      ++ .....     -...|+++.++|||+++|+++..                 ...|..+|.++.+            +.
T Consensus       267 ~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~~~-----------------s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          267 SLFTRYIP-----IANNPHGCNMAPDKKHLCVAGKL-----------------SPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             CSSEEEEE-----EESSCCCEEECTTSSEEEEECTT-----------------SSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             ceeEEEEe-----cCCCceEEEEcCCCCEEEEeCCC-----------------CCeEEEEECcccccccccccCcccceE
Confidence            11 11111     11378999999999999999644                 3468888876432            22


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-------CCcceeEeecCCCCC------CceEECCCCCEEE
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-------KAGTIEIVAQLPGFP------DNIKRSPRGGFWV  261 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~p------~~i~~d~~G~lwv  261 (359)
                      ........|.+++|++|| .+|++...+++|.+|+++..       +......-......|      .++.+++||+..+
T Consensus       325 ~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          325 AEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             ECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             EEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            222345789999999999 79999999999999998641       111111111122223      5678899998555


Q ss_pred             EEec
Q 018242          262 GIHS  265 (359)
Q Consensus       262 ~~~~  265 (359)
                      +...
T Consensus       404 ~~Nk  407 (595)
T 1fwx_A          404 CLSK  407 (595)
T ss_dssp             EEES
T ss_pred             EcCC
Confidence            5544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.05  E-value=3.9e-07  Score=81.56  Aligned_cols=209  Identities=11%  Similarity=0.038  Sum_probs=125.8

Q ss_pred             CCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.++++.+++ ++++++..++.|..|+..+.....-.               .+..+.........+++++++..++.+
T Consensus        19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~---------------~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A           19 WVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV---------------PVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE---------------EEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc---------------cceEEeCCcccEEEEEECCCCCEEEEE
Confidence            44578898865 77888999999999997543111000               000222233446688999944444455


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|..+++.......    ....+..+.++++++ +.++-                 +..+.|..||.++...
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~s~-----------------s~D~~i~vwd~~~~~~  141 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVG----HKSDVMSVDIDKKAS-MIISG-----------------SRDKTIKVWTIKGQCL  141 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTTSC-EEEEE-----------------ETTSCEEEEETTSCEE
T ss_pred             eCCCEEEEEECCCCCeeEEEcc----CCCcEEEEEEcCCCC-EEEEE-----------------eCCCeEEEEECCCCeE
Confidence            5555688899988875332221    123567899999999 55552                 2356788888876555


Q ss_pred             EEEeCCCCCCceEEEccCCC-----EEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          194 TVLLGNLSFPNGVALSEDGN-----YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~-----~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ..+.........+++.|..+     ..+++...++.|..|++....  ....+.........++++++|++.++....+.
T Consensus       142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~  219 (319)
T 3frx_A          142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTLTASPDGTLIASAGKDGE  219 (319)
T ss_dssp             EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEEEECTTSSEEEEEETTCE
T ss_pred             EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            55544444556777776432     256777788899999975431  11122222233456899999987776655554


Q ss_pred             ccccccccCCc-cceeeecC
Q 018242          269 GISKLVLSFPW-IGNVLIKL  287 (359)
Q Consensus       269 ~~~~~~~~~~~-~g~~~~~~  287 (359)
                           +..++. .++.+..+
T Consensus       220 -----i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          220 -----IMLWNLAAKKAMYTL  234 (319)
T ss_dssp             -----EEEEETTTTEEEEEE
T ss_pred             -----EEEEECCCCcEEEEe
Confidence                 555543 45554444

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.04  E-value=4.7e-07  Score=82.36  Aligned_cols=200  Identities=9%  Similarity=0.075  Sum_probs=126.3

Q ss_pred             CCCCCceEEEc-cCCCeeEEecCC------CEEEEEEcCC--------cce-EEEeecCCCCCCCCCCcccccccccccC
Q 018242           32 GAIGPESLAFD-ALGEGPYTGVSD------GRIIKWHQDQ--------RRW-LHFARTSPNRDGCEGAYEYDHAAKEHIC   95 (359)
Q Consensus        32 ~~~~p~~i~~~-~~G~~l~~~~~~------~~i~~~d~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (359)
                      .-.-|.+++++ .+|+ +|++..+      -.+..++.++        ... +.|+  .  +.           . ....
T Consensus        24 ~n~~P~gv~vd~~~gR-iFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP--~--w~-----------~-~~~l   86 (381)
T 3q6k_A           24 DNMISTAFAYDAEGEK-LFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFS--G--HK-----------T-GKEL   86 (381)
T ss_dssp             GGCCCCEEEEETTTTE-EEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECT--T--CS-----------S-SCSS
T ss_pred             CccceeeeeeecCCCc-EEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCC--C--Cc-----------c-ccce
Confidence            34578899995 8888 8988865      2444554321        112 2221  0  00           0 1122


Q ss_pred             CcceEEEEecCCCeEEEEeCC-------------C---cEEEEeCCCC--eEEEEeecCC--CccccccceEEEe-C--C
Q 018242           96 GRPLGLCFNKTNGDLYIADAY-------------F---GLLKVGPEGG--LATAVATQSE--GIPFRFCNSLDID-Q--S  152 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~-------------~---~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~~d-~--~  152 (359)
                      ..+.++.+|+ .++|||-|.+             .   .|+.+|++++  ++........  ..+....+++++| .  +
T Consensus        87 vsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~  165 (381)
T 3q6k_A           87 TSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK  165 (381)
T ss_dssp             SCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred             EEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence            3467899999 9999999864             1   3889999998  6544332111  1234578999999 2  2


Q ss_pred             ----CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCC-------------------CCCceEEEc
Q 018242          153 ----TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNL-------------------SFPNGVALS  209 (359)
Q Consensus       153 ----g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------------------~~p~gia~~  209 (359)
                          +.++||+|.+                 ..+|+++|..+++...+.+..                   .+..||+++
T Consensus       166 ~~c~~~~aYItD~~-----------------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLs  228 (381)
T 3q6k_A          166 GDCSETFVYITNFL-----------------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLG  228 (381)
T ss_dssp             TTSCSEEEEEEETT-----------------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEEC
T ss_pred             CCCCccEEEEEcCC-----------------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEec
Confidence                4569999875                 346888888777665544210                   244689999


Q ss_pred             cC----CCEEEEEecCCCEEEEEEcC---CCC-CcceeEeecCCCCCC--ceEEC-CCCCEEEEEecC
Q 018242          210 ED----GNYILLAETTSCRILRYWLK---TSK-AGTIEIVAQLPGFPD--NIKRS-PRGGFWVGIHSR  266 (359)
Q Consensus       210 ~d----~~~l~v~~~~~~~i~~~~~~---~~~-~~~~~~~~~~~~~p~--~i~~d-~~G~lwv~~~~~  266 (359)
                      |+    +++||+....+..+++...+   ... ....+.+.+.+...+  +++.| .+|+||++....
T Consensus       229 p~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~  296 (381)
T 3q6k_A          229 DRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANT  296 (381)
T ss_dssp             CCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSS
T ss_pred             CCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccC
Confidence            98    88999999998899998742   222 223333333321234  36776 789999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.04  E-value=7e-09  Score=94.74  Aligned_cols=195  Identities=9%  Similarity=-0.047  Sum_probs=113.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++|+|++++++..++.|..||..++.+....                  .+.........+++++++..|+.+.
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~~~~s~~~~~l~s~s   74 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR------------------TFSDHDKIVTCVDWAPKSNRIVTCS   74 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC------------------CBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE------------------EEecCCceEEEEEEeCCCCEEEEEe
Confidence            5678999999997777778899999998876332221                  2223334567899999544555556


Q ss_pred             CCCcEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc-
Q 018242          115 AYFGLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ-  192 (359)
Q Consensus       115 ~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  192 (359)
                      ..+.|..++..+++ ....... .. ....+..++++++|+++..+                  ...+.|..+|.++++ 
T Consensus        75 ~d~~v~vwd~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGTWKQTLVL-LR-LNRAATFVRWSPNEDKFAVG------------------SGARVISVCYFEQEND  134 (377)
T ss_dssp             TTSSEEEC------CCCCEEEC-CC-CSSCEEEEECCTTSSCCEEE------------------ESSSCEEECCC-----
T ss_pred             CCCeEEEEEcCCCCceeeeeEe-cc-cCCceEEEEECCCCCEEEEE------------------ecCCeEEEEEECCccc
Confidence            55568888887765 1111111 11 12356789999999845444                  224568888877654 


Q ss_pred             ---EEEEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCc-------------ceeEeecC--CCCCCceEE
Q 018242          193 ---VTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-------------TIEIVAQL--PGFPDNIKR  253 (359)
Q Consensus       193 ---~~~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~--~~~p~~i~~  253 (359)
                         ...+.. .......++++|+++. +++...++.|..|++......             ..+.....  .+....+++
T Consensus       135 ~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  213 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTILSLDWHPNNVL-LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF  213 (377)
T ss_dssp             CCCCEEECSSCCSCEEEEEECTTSSE-EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEE
T ss_pred             ceeeeEeecccCCCeEEEEEcCCCCE-EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEE
Confidence               333433 3455678999999985 455556788999998532110             01111112  122455889


Q ss_pred             CCCCCEEEEEecCCC
Q 018242          254 SPRGGFWVGIHSRRK  268 (359)
Q Consensus       254 d~~G~lwv~~~~~~~  268 (359)
                      +++|++.++....+.
T Consensus       214 sp~~~~l~~~~~d~~  228 (377)
T 3dwl_C          214 SPSGNALAYAGHDSS  228 (377)
T ss_dssp             CTTSSCEEEEETTTE
T ss_pred             CCCCCEEEEEeCCCc
Confidence            999986665544443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.04  E-value=3.2e-07  Score=83.16  Aligned_cols=196  Identities=10%  Similarity=0.049  Sum_probs=119.8

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCeEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~l~  111 (359)
                      ..-.+++++++|+++.++..++.|..||..........                  .+.........++++++  +..++
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID------------------TLTGHEGPVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE------------------EECCCSSCEEEEEECCGGGCSEEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee------------------EecCCCCcEEEEEeCCCCCCCEEE
Confidence            35568999999998888888999999998744332221                  22223344678888763  34455


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC--CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      .+...+.|..++..+++...+.....  ....+..++++++  ++.++++                  ...+.|..||..
T Consensus        74 s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~------------------~~d~~i~v~d~~  133 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVA------------------SSDGKVSVVEFK  133 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEE------------------ETTSEEEEEECC
T ss_pred             EeccCCEEEEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEe------------------cCCCcEEEEecC
Confidence            55555568888988886433222111  1235778999999  8844444                  234678888876


Q ss_pred             CCc---EEEEeCCCCCCceEEEcc-------------CCCEEEEEecCCCEEEEEEcCCCCCcc-e-eEeecCCCCCCce
Q 018242          190 TKQ---VTVLLGNLSFPNGVALSE-------------DGNYILLAETTSCRILRYWLKTSKAGT-I-EIVAQLPGFPDNI  251 (359)
Q Consensus       190 ~~~---~~~~~~~~~~p~gia~~~-------------d~~~l~v~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~p~~i  251 (359)
                      ++.   ...+.........++++|             +++ ++++...++.|..|++....... . ..+.........+
T Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             TTSCCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence            552   222233344567888988             576 45556677899999986542211 1 1111122334568


Q ss_pred             EECCC---CCEEEEEecCCC
Q 018242          252 KRSPR---GGFWVGIHSRRK  268 (359)
Q Consensus       252 ~~d~~---G~lwv~~~~~~~  268 (359)
                      +++++   |++.++....+.
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSC
T ss_pred             EECCCCCCCCeEEEEeCCCE
Confidence            99998   776665555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.04  E-value=9e-08  Score=96.48  Aligned_cols=216  Identities=8%  Similarity=0.045  Sum_probs=135.8

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++|+|+.+.++..++.|..||..+++...                    .+.........+++++++..|.++
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------~~~~~~~~v~~~~~s~~~~~l~~~   73 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------SIQVTETPVRAGKFIARKNWIIVG   73 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCSSCEEEEEEEGGGTEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------------EEecCCCcEEEEEEeCCCCEEEEE
Confidence            467899999999988888889999999987763222                    122233446789999955556666


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC-c
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK-Q  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~  192 (359)
                      ...+.|..++..+++.......    ....+..++++|+|+++..+                  ...+.|..|+.+++ .
T Consensus        74 ~~dg~i~vw~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~------------------~~dg~i~vw~~~~~~~  131 (814)
T 3mkq_A           74 SDDFRIRVFNYNTGEKVVDFEA----HPDYIRSIAVHPTKPYVLSG------------------SDDLTVKLWNWENNWA  131 (814)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSEEEEE------------------ETTSEEEEEEGGGTSE
T ss_pred             eCCCeEEEEECCCCcEEEEEec----CCCCEEEEEEeCCCCEEEEE------------------cCCCEEEEEECCCCce
Confidence            6555688999887765432221    12356789999999945444                  23467888887765 3


Q ss_pred             EEE-EeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECC--CCCEEEEEecCC
Q 018242          193 VTV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP--RGGFWVGIHSRR  267 (359)
Q Consensus       193 ~~~-~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~--~G~lwv~~~~~~  267 (359)
                      ... +.........++++| +++ .+++...++.|..|++.....  ...+.. .......+++.+  +|.+.++....+
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  208 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence            332 333344567899999 665 566666788999999865422  112222 223355678877  787666555544


Q ss_pred             CccccccccCC-ccceeeecCCccceeeeeecc
Q 018242          268 KGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       268 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~  299 (359)
                      .     +..++ ..++....+..+...+..+.+
T Consensus       209 ~-----i~~~d~~~~~~~~~~~~~~~~v~~~~~  236 (814)
T 3mkq_A          209 T-----IKIWDYQTKSCVATLEGHMSNVSFAVF  236 (814)
T ss_dssp             E-----EEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             E-----EEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            3     44444 345555554433333433333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.03  E-value=9.2e-09  Score=91.30  Aligned_cols=165  Identities=14%  Similarity=0.115  Sum_probs=107.5

Q ss_pred             cCCcceEEEEecCCCeEEEEeCC-CcEEEEeCCCCeEEEEeec-CC--CccccccceEEE---eCCCCEEEE-EeCCCcc
Q 018242           94 ICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPEGGLATAVATQ-SE--GIPFRFCNSLDI---DQSTGIIYF-TDSSSQF  165 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~---d~~g~~l~v-~d~~~~~  165 (359)
                      ..-.|-++.+++.++.+|+++.. ..|.+++++++.++.+... ..  +.+...+.+|.+   |++|+ ||+ .+.+.+|
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETTTT
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccccc
Confidence            33457789999889999999975 4699999987665444211 11  233346789999   79987 998 4533333


Q ss_pred             ccccceeeeeecCCCceEEEEeCC---CCcEEEEeC--------------CCCCCceEEEccCCCEEEEEecCC-CEEEE
Q 018242          166 QRRNHISVILSGDKTGRLMKYDPA---TKQVTVLLG--------------NLSFPNGVALSEDGNYILLAETTS-CRILR  227 (359)
Q Consensus       166 ~~~~~~~~~~~~~~~g~v~~~d~~---~~~~~~~~~--------------~~~~p~gia~~~d~~~l~v~~~~~-~~i~~  227 (359)
                      .....     .......|+++|++   +++......              ....+++++++++|+ .||+++.. +.|++
T Consensus        90 ~~~g~-----~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~r  163 (334)
T 2p9w_A           90 NFADQ-----SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIAR  163 (334)
T ss_dssp             CTTSC-----CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEE
T ss_pred             ccccc-----ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEE
Confidence            21100     00123569999988   554433211              122488999999998 89999999 99999


Q ss_pred             EEcCCCCCcceeEee-cC-----CCCCCceEECCCCCEEEEEecCCC
Q 018242          228 YWLKTSKAGTIEIVA-QL-----PGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       228 ~~~~~~~~~~~~~~~-~~-----~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ++.++..   ...+. ..     ...++||++.++|++.++....+.
T Consensus       164 V~pdG~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~  207 (334)
T 2p9w_A          164 VSADGKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA  207 (334)
T ss_dssp             ECTTSCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS
T ss_pred             EeCCCCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe
Confidence            9876542   22222 11     123779999999986665555544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.03  E-value=1.9e-07  Score=86.38  Aligned_cols=183  Identities=10%  Similarity=0.012  Sum_probs=114.3

Q ss_pred             EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcE
Q 018242           40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGL  119 (359)
Q Consensus        40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i  119 (359)
                      ++.++|+++.++..++.|..||..+++...                    .+.........+++++++..|+.+...+.|
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i  163 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQRE--------------------IDQAHVSEITKLKFFPSGEALISSSQDMQL  163 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEE--------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceee--------------------ecccccCccEEEEECCCCCEEEEEeCCCeE
Confidence            567899988888899999999988764322                    112233456789999944445555555568


Q ss_pred             EEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC
Q 018242          120 LKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN  199 (359)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~  199 (359)
                      ..+|..+++.......    ....+..++++|+|+.++.+                  ...+.|..||..+++.......
T Consensus       164 ~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~------------------~~d~~v~iwd~~~~~~~~~~~~  221 (420)
T 3vl1_A          164 KIWSVKDGSNPRTLIG----HRATVTDIAIIDRGRNVLSA------------------SLDGTIRLWECGTGTTIHTFNR  221 (420)
T ss_dssp             EEEETTTCCCCEEEEC----CSSCEEEEEEETTTTEEEEE------------------ETTSCEEEEETTTTEEEEEECB
T ss_pred             EEEeCCCCcCceEEcC----CCCcEEEEEEcCCCCEEEEE------------------cCCCcEEEeECCCCceeEEeec
Confidence            8999887653322211    12356789999999944433                  2345788888877655433221


Q ss_pred             -------------------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEE
Q 018242          200 -------------------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKR  253 (359)
Q Consensus       200 -------------------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~  253 (359)
                                               ......++++|+++. +++...++.|..|++....  ....+.. .......+++
T Consensus       222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~  298 (420)
T 3vl1_A          222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-VIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTV  298 (420)
T ss_dssp             TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEE
T ss_pred             CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-EEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEE
Confidence                                     122345667888875 4555677889999986432  1111211 2233456899


Q ss_pred             CCCCC-EEEEEecCC
Q 018242          254 SPRGG-FWVGIHSRR  267 (359)
Q Consensus       254 d~~G~-lwv~~~~~~  267 (359)
                      +++|. +.++....+
T Consensus       299 ~~~~~~~l~~g~~dg  313 (420)
T 3vl1_A          299 DGNNANYIYAGYENG  313 (420)
T ss_dssp             CSSCTTEEEEEETTS
T ss_pred             eCCCCCEEEEEeCCC
Confidence            99987 665554444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.03  E-value=3e-08  Score=93.32  Aligned_cols=179  Identities=15%  Similarity=0.123  Sum_probs=106.0

Q ss_pred             EEEeeCCCCCCceEEEccCCC-eeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCccccccccc-----ccCCcc
Q 018242           26 VQYQIEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKE-----HICGRP   98 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p   98 (359)
                      .+++ .++..|++|++.|+|. ++|++...|+|+++++++... ..+...+.              .+.     .....+
T Consensus         7 ~~va-~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~--------------~~~~g~~~~~e~Gl   71 (463)
T 2wg3_C            7 QEVV-SGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHK--------------LVQSGIKGGDERGL   71 (463)
T ss_dssp             EEEE-EEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTT--------------TBCCCCSSSCCCSE
T ss_pred             EEec-cCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcc--------------eeccCccccCCCcc
Confidence            3444 4589999999999984 488888889999998754310 11111000              011     113457


Q ss_pred             eEEEEecC---CCeEEEEeCC-------------CcEEEEeCCCC--------eEEEEeecCCCccccccceEEEeCCCC
Q 018242           99 LGLCFNKT---NGDLYIADAY-------------FGLLKVGPEGG--------LATAVATQSEGIPFRFCNSLDIDQSTG  154 (359)
Q Consensus        99 ~gi~~~~~---~g~l~v~~~~-------------~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~d~~g~  154 (359)
                      .||+++|+   ++.||++...             ..|.|+....+        ..+.+..............|+++|||.
T Consensus        72 lgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~  151 (463)
T 2wg3_C           72 LSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF  151 (463)
T ss_dssp             EEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC
T ss_pred             eeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc
Confidence            89999984   5899998431             25777765421        122333211112334567899999999


Q ss_pred             EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC--------------------cEEEEeCCCCCCceEEEccC---
Q 018242          155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK--------------------QVTVLLGNLSFPNGVALSED---  211 (359)
Q Consensus       155 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~--------------------~~~~~~~~~~~p~gia~~~d---  211 (359)
                       |||+.-...................|+|+|+++++.                    ..+.+..+...|.+++|+++   
T Consensus       152 -LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~  230 (463)
T 2wg3_C          152 -LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTD  230 (463)
T ss_dssp             -EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSS
T ss_pred             -EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCC
Confidence             999953321100000000001234689999999863                    22455667788999999987   


Q ss_pred             --CC-EEEEEec
Q 018242          212 --GN-YILLAET  220 (359)
Q Consensus       212 --~~-~l~v~~~  220 (359)
                        |+ ++|.++.
T Consensus       231 ~~G~l~~~~~D~  242 (463)
T 2wg3_C          231 ININLTILCSDS  242 (463)
T ss_dssp             TTCSEEEEEECC
T ss_pred             cccceEEEeccc
Confidence              33 4666664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.03  E-value=8.5e-07  Score=78.67  Aligned_cols=157  Identities=13%  Similarity=0.113  Sum_probs=104.5

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++++|++++++..++.|..||..+++...                    .+.........+.+++++..++.+
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--------------------~~~~~~~~v~~~~~~~~~~~l~s~  125 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--------------------TLKGHSNYVFCCNFNPQSNLIVSG  125 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------------EEECCSSCEEEEEECSSSSEEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE--------------------EEcCCCCCEEEEEEcCCCCEEEEE
Confidence            345689999999988888999999999998764322                    122222345678899944445555


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|.++++.......    ....+..+.++++|+ ++++-                 ...+.|..||..+++.
T Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~-~l~~~-----------------~~d~~i~~wd~~~~~~  183 (312)
T 4ery_A          126 SFDESVRIWDVKTGKCLKTLPA----HSDPVSAVHFNRDGS-LIVSS-----------------SYDGLCRIWDTASGQC  183 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEETTTCCE
T ss_pred             eCCCcEEEEECCCCEEEEEecC----CCCcEEEEEEcCCCC-EEEEE-----------------eCCCcEEEEECCCCce
Confidence            5555688999987764332221    112467889999999 44441                 2356788899877654


Q ss_pred             EEEe-C-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TVLL-G-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~~~-~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .... . .......++++|+++.++ +...++.|..|++...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          184 LKTLIDDDNPPVSFVKFSPNGKYIL-AATLDNTLKLWDYSKG  224 (312)
T ss_dssp             EEEECCSSCCCEEEEEECTTSSEEE-EEETTTEEEEEETTTT
T ss_pred             eeEEeccCCCceEEEEECCCCCEEE-EEcCCCeEEEEECCCC
Confidence            4322 2 223346789999998654 4556789999998643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.03  E-value=1.1e-06  Score=80.87  Aligned_cols=204  Identities=14%  Similarity=0.011  Sum_probs=117.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.+++++|+|+++.++. ++.+..|+..+++... +....   ....+|.................+++++++..|..+
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS---AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcc---ccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            446899999999665554 5789999987765332 21100   000000000000000011124678999944445555


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|.++++.......    ....+..++++|+|++|+.+                  +..+.|..||..+++.
T Consensus       142 ~~d~~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~s~------------------s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          142 AEDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGDKLVSG------------------SGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEE------------------ETTSEEEEEETTTTEE
T ss_pred             cCCCeEEEEECCCCcEEEEEcc----CCCCEEEEEEcCCCCEEEEe------------------cCCCcEEEEECCCCee
Confidence            5555688899988875433221    12356789999999944333                  2356789999987766


Q ss_pred             EEEeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-------CCCCCCceEECCCCCEEEEEec
Q 018242          194 TVLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-------LPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      ............++++| +++ ++++...++.|..||+.....  ...+..       .......++++++|++.++...
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            54433334567788998 676 566667788999999765421  111110       1122345889999987665554


Q ss_pred             CC
Q 018242          266 RR  267 (359)
Q Consensus       266 ~~  267 (359)
                      .+
T Consensus       277 d~  278 (393)
T 1erj_A          277 DR  278 (393)
T ss_dssp             TS
T ss_pred             CC
Confidence            44

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.02  E-value=4e-08  Score=89.93  Aligned_cols=190  Identities=12%  Similarity=0.016  Sum_probs=117.5

Q ss_pred             ceEEEccCCCeeEEec--CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           37 ESLAFDALGEGPYTGV--SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ..++++|||+++.+++  .++.|..||..+.+...                    .+. .......++|+| +|+++++.
T Consensus       137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~--------------------~~~-~~~~V~~v~fsp-dg~~l~s~  194 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF--------------------EIE-TRGEVKDLHFST-DGKVVAYI  194 (365)
T ss_dssp             EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE--------------------EEE-CSSCCCEEEECT-TSSEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE--------------------EeC-CCCceEEEEEcc-CCceEEec
Confidence            4799999999776554  56899999998864322                    111 224467899999 77777665


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+++.+++..+++......  .......+..++++|+|+ ..++-+.             .......+..++.......
T Consensus       195 s~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~fspdg~-~l~~~s~-------------d~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          195 TGSSLEVISTVTGSCIARKT--DFDKNWSLSKINFIADDT-VLIAASL-------------KKGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             CSSCEEEEETTTCCEEEEEC--CCCTTEEEEEEEEEETTE-EEEEEEE-------------SSSCCEEEEEEEEETTEEE
T ss_pred             cceeEEEEEeccCcceeeee--cCCCCCCEEEEEEcCCCC-EEEEEec-------------CCcceeEEeecccccceec
Confidence            56678888877765432211  111223567899999999 4444111             0111124556665443322


Q ss_pred             -----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCC
Q 018242          195 -----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       195 -----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                           .+.........++|+|||++ +++...++.|..||+...+  ....+.. -......++++|+|++.++....+
T Consensus       259 ~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          259 VLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeCCC
Confidence                 12233445678999999984 5556677899999975431  1122222 123346799999999887665544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.7e-07  Score=86.36  Aligned_cols=273  Identities=9%  Similarity=-0.007  Sum_probs=152.7

Q ss_pred             CCCceEEEccCCC-eeEEe----------cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           34 IGPESLAFDALGE-GPYTG----------VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        34 ~~p~~i~~~~~G~-~l~~~----------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      ....+++++|+|+ +++++          ..++.|..||..+++....                  +...........++
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~~v~~~~   74 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP------------------IASLQVDSKFNDLD   74 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC------------------SCCCCCSSCEEEEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE------------------EEEEecCCceEEEE
Confidence            3567899999987 67777          6678899999887521100                  01111223467899


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCC----C-eEEEEeecCCCccccccceEEEeCC-CCEEEEEeCCCccccccceeeeee
Q 018242          103 FNKTNGDLYIADAYFGLLKVGPEG----G-LATAVATQSEGIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       103 ~~~~~g~l~v~~~~~~i~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      +++++..|+.+...+.|..++..+    . ....+..     ....+..++++++ ++ ++++-                
T Consensus        75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~-~l~s~----------------  132 (416)
T 2pm9_A           75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-----HSSSVKTVKFNAKQDN-VLASG----------------  132 (416)
T ss_dssp             ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-----SSSCCCEEEECSSSTT-BEEEE----------------
T ss_pred             ECCCCCeEEEEccCCeEEEeecccccccccchhhccC-----CccceEEEEEcCCCCC-EEEEE----------------
Confidence            999555565555555688888876    2 2222211     1235778999998 77 55542                


Q ss_pred             cCCCceEEEEeCCCCc------EEEE----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--
Q 018242          177 GDKTGRLMKYDPATKQ------VTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--  244 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~------~~~~----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--  244 (359)
                       ...+.|..||..+++      ....    .........+++++++..++++...++.|..|++...+.  ...+...  
T Consensus       133 -~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~  209 (416)
T 2pm9_A          133 -GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSYTSP  209 (416)
T ss_dssp             -CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE--EEEECCCCC
T ss_pred             -cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc--ceEEecccc
Confidence             335678888887654      1111    122344678999999544677777888999999865321  1112111  


Q ss_pred             ----CCCCCceEECCCC-CEEEEEecCC---CccccccccCCc-cc-eeeecCC-ccceeeeeecccc-cCc-------c
Q 018242          245 ----PGFPDNIKRSPRG-GFWVGIHSRR---KGISKLVLSFPW-IG-NVLIKLP-IDIVKIHSSLVKL-SGN-------G  305 (359)
Q Consensus       245 ----~~~p~~i~~d~~G-~lwv~~~~~~---~~~~~~~~~~~~-~g-~~~~~~~-~~~~~~~~~~~~~-~~~-------~  305 (359)
                          ......++++++| +++++....+   .     +..++. .+ +....+. .....+..+.+.. ...       .
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~-----i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPS-----ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             SSCCCCCEEEEEECSSCTTEEEEEECCSSSCC-----CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             ccccCCceEEEEECCCCCCEEEEEECCCCCce-----EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence                2334568999987 5666554443   3     444443 22 3444443 3333344443332 111       0


Q ss_pred             eEEEEECC-CCCEEEEEEccCCceeeceEEEEEe-CC-EEEEecCCCCeEEEEcCC
Q 018242          306 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEK-DG-NLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       306 ~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~-~g-~l~ig~~~~~~l~~~~~~  358 (359)
                      +.+..++. .++.+..+..+.+    .+..+... ++ ++++..-.+..|.++++.
T Consensus       285 g~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          285 NTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             SEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             CCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            23444442 3444444443222    22333333 34 566665567888888765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.01  E-value=1.6e-07  Score=87.16  Aligned_cols=188  Identities=11%  Similarity=0.086  Sum_probs=120.9

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++++|+++.++..++.|..||..+.+...                    .+.........+++++++..++.+.
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--------------------~~~~h~~~V~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--------------------TMHGHDHNVSSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--------------------CCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--------------------EEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            34588999999988899999999999998753221                    2222334467899999444455555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..+|..++........    ....+..+.++++|+ ++++-                 +..+.|..||..+++..
T Consensus       212 ~D~~i~~wd~~~~~~~~~~~~----h~~~v~~~~~~~~g~-~l~s~-----------------s~D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          212 RDKTIKMWEVQTGYCVKTFTG----HREWVRMVRPNQDGT-LIASC-----------------SNDQTVRVWVVATKECK  269 (410)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEETTTCCEE
T ss_pred             CCCeEEEEECCCCcEEEEEeC----CCccEEEEEECCCCC-EEEEE-----------------cCCCeEEEEECCCCcee
Confidence            555688899988764322211    123567788999999 55551                 23567888888776654


Q ss_pred             EEe-CCCCCCceEEEccC--------------------CCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          195 VLL-GNLSFPNGVALSED--------------------GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       195 ~~~-~~~~~p~gia~~~d--------------------~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                      ... ........++++|+                    +. ++++...++.|..||+....  ....+.........+++
T Consensus       270 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~  346 (410)
T 1vyh_C          270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLF  346 (410)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEE
T ss_pred             eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEE
Confidence            432 33344567788775                    44 56777788999999986432  12222222333467899


Q ss_pred             CCCCCEEEEEecCC
Q 018242          254 SPRGGFWVGIHSRR  267 (359)
Q Consensus       254 d~~G~lwv~~~~~~  267 (359)
                      +++|++.++....+
T Consensus       347 ~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          347 HSGGKFILSCADDK  360 (410)
T ss_dssp             CSSSSCEEEEETTT
T ss_pred             cCCCCEEEEEeCCC
Confidence            99997666554444

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.00  E-value=1.4e-07  Score=85.19  Aligned_cols=189  Identities=13%  Similarity=0.011  Sum_probs=117.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++++|+.++++..++.|..||..+++....                    +. ....+..+.+++++..++++
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------~~-~~~~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT--------------------WK-SPVPVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------------------EE-CSSCEEEEEECTTSSEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--------------------ee-cCCCeEEEEEccCCCEEEEe
Confidence            3456899999999888888999999999987643321                    11 22346789999955555555


Q ss_pred             eCC-----CcEEEEeCCCCeE----EEEeec-----CCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          114 DAY-----FGLLKVGPEGGLA----TAVATQ-----SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       114 ~~~-----~~i~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      ...     +.|..++...+..    ......     ........+..++++++|++++++                  ..
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~  195 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG------------------HK  195 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE------------------ET
T ss_pred             cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE------------------cC
Confidence            544     4577777654321    100000     000111256788999999945444                  23


Q ss_pred             CceEEEEeCCC-CcEE-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCC
Q 018242          180 TGRLMKYDPAT-KQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  257 (359)
Q Consensus       180 ~g~v~~~d~~~-~~~~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  257 (359)
                      .+.|..||..+ +... .+.........++++|+++.++ +...++.|..|++.....  ...+. .......++++++|
T Consensus       196 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~  271 (369)
T 3zwl_B          196 DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI-TSSRDTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLK  271 (369)
T ss_dssp             TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSS
T ss_pred             CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE-EecCCceEEEEECCCCce--eeeec-CCCCceeEEecCCC
Confidence            46799999886 3333 2333445567899999998654 445678999999865321  12222 22334568889999


Q ss_pred             CEEEEEec
Q 018242          258 GFWVGIHS  265 (359)
Q Consensus       258 ~lwv~~~~  265 (359)
                      ...++...
T Consensus       272 ~~l~~~~~  279 (369)
T 3zwl_B          272 EFIILGGG  279 (369)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEeec
Confidence            75554443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.00  E-value=1.5e-07  Score=82.09  Aligned_cols=190  Identities=11%  Similarity=-0.014  Sum_probs=118.3

Q ss_pred             CCCceEEEccCCCeeEEec----CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           34 IGPESLAFDALGEGPYTGV----SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      ..+.+++++|+|+.+++..    ....|+.++..++....+                     ... .....+++++++..
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~---------------------~~~-~~~~~~~~spdg~~  142 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM---------------------TKN-LPSYWHGWSPDGKS  142 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC---------------------CSS-SSEEEEEECTTSSE
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe---------------------ecC-CCccceEECCCCCE
Confidence            3456799999999776665    246889998876643322                     111 12567789995555


Q ss_pred             EEEEeC-CC--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          110 LYIADA-YF--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       110 l~v~~~-~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++++.. .+  .|+.++.++++...+..     ....+..+.++|+|++++++...               .....|+.+
T Consensus       143 l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~---------------~~~~~i~~~  202 (297)
T 2ojh_A          143 FTYCGIRDQVFDIYSMDIDSGVETRLTH-----GEGRNDGPDYSPDGRWIYFNSSR---------------TGQMQIWRV  202 (297)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEECCC-----SSSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEE
T ss_pred             EEEEECCCCceEEEEEECCCCcceEccc-----CCCccccceECCCCCEEEEEecC---------------CCCccEEEE
Confidence            664432 33  37777787776654322     12346789999999966666321               123468888


Q ss_pred             eCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC----------CEEEEEEcCCCCCcceeEeecCCCCCCceEECCC
Q 018242          187 DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS----------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  256 (359)
Q Consensus       187 d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  256 (359)
                      +.+++....+.........++++||++.+++.....          ..|+.|++.+.+......+.........++++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  282 (297)
T 2ojh_A          203 RVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD  282 (297)
T ss_dssp             ETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred             CCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence            877666665544333456789999999877766532          5699999865433222222222344667899999


Q ss_pred             CC-EEEEEec
Q 018242          257 GG-FWVGIHS  265 (359)
Q Consensus       257 G~-lwv~~~~  265 (359)
                      |+ |+++...
T Consensus       283 g~~l~~~~~~  292 (297)
T 2ojh_A          283 GDEFAYVRYF  292 (297)
T ss_dssp             SSEEEEEEEC
T ss_pred             CCEEEEEEec
Confidence            97 4444443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.00  E-value=9.3e-08  Score=85.74  Aligned_cols=188  Identities=10%  Similarity=-0.044  Sum_probs=117.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcc----eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC-
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR----WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG-  108 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g-  108 (359)
                      ....+++++++|++++++..++.|..|+..+.+    ...                     ..........+++++++. 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~   70 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ---------------------SLRYKHPLLCCNFIDNTDL   70 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE---------------------EEECSSCEEEEEEEESSSE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee---------------------eeecCCceEEEEECCCCCc
Confidence            355689999999988888999999999987654    221                     112234467899999444 


Q ss_pred             eEEEEeCCCcEEEEeC-CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          109 DLYIADAYFGLLKVGP-EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       109 ~l~v~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      .++++...+.|..++. ++++...+...   .....+..+++++ ++.++.+                  ...+.|..||
T Consensus        71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~------------------~~d~~i~iwd  128 (342)
T 1yfq_A           71 QIYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAA------------------SWDGLIEVID  128 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEE------------------ETTSEEEEEC
T ss_pred             EEEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEE------------------cCCCeEEEEc
Confidence            4666666666999999 88876443220   0123567899999 8734443                  2345788888


Q ss_pred             CCC---------CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC-CCCcceeEeecCCCCCCceEECC-C
Q 018242          188 PAT---------KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTIEIVAQLPGFPDNIKRSP-R  256 (359)
Q Consensus       188 ~~~---------~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~p~~i~~d~-~  256 (359)
                      ..+         ++..........+..+++++++   +++...++.|..|++.. ...............+..+++++ +
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  205 (342)
T 1yfq_A          129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             ccccccccccccCCeeeEEeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC
Confidence            653         2211111222345688888775   44456678999999875 32211111112333456789999 8


Q ss_pred             CCEEEEEecCC
Q 018242          257 GGFWVGIHSRR  267 (359)
Q Consensus       257 G~lwv~~~~~~  267 (359)
                      |+++++....+
T Consensus       206 ~~~l~~~~~dg  216 (342)
T 1yfq_A          206 QEGYACSSIDG  216 (342)
T ss_dssp             GCEEEEEETTS
T ss_pred             CCEEEEEecCC
Confidence            88766555544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.00  E-value=1.2e-07  Score=94.23  Aligned_cols=224  Identities=12%  Similarity=0.066  Sum_probs=123.8

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..+.+++++||+. +.++. ++.|+.||..+++...+.                     ........++++|++..|.++
T Consensus        82 ~~v~~~~~spd~~-~~~~~-~~~i~~~d~~~~~~~~l~---------------------~~~~~~~~~~~SpdG~~la~~  138 (706)
T 2z3z_A           82 FPSFRTLDAGRGL-VVLFT-QGGLVGFDMLARKVTYLF---------------------DTNEETASLDFSPVGDRVAYV  138 (706)
T ss_dssp             CCCEEEEETTTTE-EEEEE-TTEEEEEETTTTEEEEEE---------------------CCTTCCTTCEECTTSSEEEEE
T ss_pred             cCceeEEECCCCe-EEEEE-CCEEEEEECCCCceEEcc---------------------CCcccccCCcCCCCCCEEEEE
Confidence            4578999999954 44443 489999999887544332                     111234567889944445444


Q ss_pred             eCCCcEEEEeCCC-----CeEEEEeecCCC----------ccccccceEEEeCCCCEEEEEeCCCcccccccee------
Q 018242          114 DAYFGLLKVGPEG-----GLATAVATQSEG----------IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS------  172 (359)
Q Consensus       114 ~~~~~i~~~~~~~-----~~~~~~~~~~~~----------~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~------  172 (359)
                       ..+.|+.++..+     ++...+......          .+...+..+.++|||++|+++....... ..+..      
T Consensus       139 -~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~-~~~~~~~~~~~  216 (706)
T 2z3z_A          139 -RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV-KPTPIVDYHPL  216 (706)
T ss_dssp             -ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS-CCEEEEECCSS
T ss_pred             -ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC-ceEEeeccCCC
Confidence             345689999887     765443221110          0011257899999999777663100000 00000      


Q ss_pred             -----ee-----eecCCCceEEEEeCCCCcEEEEeCC---CCCCceEEEccCCCEEEEEecCC----CEEEEEEcCCCCC
Q 018242          173 -----VI-----LSGDKTGRLMKYDPATKQVTVLLGN---LSFPNGVALSEDGNYILLAETTS----CRILRYWLKTSKA  235 (359)
Q Consensus       173 -----~~-----~~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~d~~~l~v~~~~~----~~i~~~~~~~~~~  235 (359)
                           ..     ........|+.+|.++++...+...   ...+..++++|||+.++++....    ..|+.|++.... 
T Consensus       217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-  295 (706)
T 2z3z_A          217 EAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-  295 (706)
T ss_dssp             SCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-
T ss_pred             CCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-
Confidence                 00     0011235699999988876654322   22356789999999888765443    388899876541 


Q ss_pred             cceeEee-c-CCC---CCCceEECC--CCCEEEEEecCCCccccccccCCccceeeecC
Q 018242          236 GTIEIVA-Q-LPG---FPDNIKRSP--RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKL  287 (359)
Q Consensus       236 ~~~~~~~-~-~~~---~p~~i~~d~--~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~  287 (359)
                       ....+. . ...   ....+++++  +|++.++....+.   ..++.++..++.+..+
T Consensus       296 -~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~---~~l~~~~~~~~~~~~l  350 (706)
T 2z3z_A          296 -FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW---NHLYLYDTTGRLIRQV  350 (706)
T ss_dssp             -EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS---CEEEEEETTSCEEEEC
T ss_pred             -eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc---cEEEEEECCCCEEEec
Confidence             112221 1 111   135689998  9975444433322   1133334445544444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.00  E-value=5.8e-07  Score=81.19  Aligned_cols=189  Identities=11%  Similarity=0.034  Sum_probs=117.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.+++++++|.+++++..++.|..||..+++...                    .+.........+++++++..++.+..
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~--------------------~~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK--------------------RFVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE--------------------EEECCCSCEEEEEECSSTTEEEEEET
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE--------------------EEcCCCCcEEEEEECCCCCEEEEEcC
Confidence            3578999999988889999999999998764221                    12222344678999995555655665


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCC----------CEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQST----------GIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g----------~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      .+.|..+|..+........  .......+..+.++|++          . ++++                 ....+.|..
T Consensus       139 d~~i~~wd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s-----------------~~~d~~i~i  198 (343)
T 2xzm_R          139 EREIKLWNILGECKFSSAE--KENHSDWVSCVRYSPIMKSANKVQPFAP-YFAS-----------------VGWDGRLKV  198 (343)
T ss_dssp             TSCEEEEESSSCEEEECCT--TTSCSSCEEEEEECCCCCSCSCCCSSCC-EEEE-----------------EETTSEEEE
T ss_pred             CCEEEEEeccCCceeeeec--ccCCCceeeeeeeccccccccccCCCCC-EEEE-----------------EcCCCEEEE
Confidence            5568888987544322211  11122345677888776          4 3333                 234567888


Q ss_pred             EeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242          186 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      ||........+.........++++|++++ +++...++.|..||+...... ...+. .......+++++++.+.++..+
T Consensus       199 wd~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~-~~~~~-~~~~v~~v~~sp~~~~la~~~d  275 (343)
T 2xzm_R          199 WNTNFQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYP-QREFD-AGSTINQIAFNPKLQWVAVGTD  275 (343)
T ss_dssp             EETTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSC-SEEEE-CSSCEEEEEECSSSCEEEEEES
T ss_pred             EcCCCceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccc-ceeec-CCCcEEEEEECCCCCEEEEECC
Confidence            98653333333344455688999999985 556667889999998432211 11121 1222467899999987665544


Q ss_pred             CC
Q 018242          266 RR  267 (359)
Q Consensus       266 ~~  267 (359)
                      ..
T Consensus       276 ~~  277 (343)
T 2xzm_R          276 QG  277 (343)
T ss_dssp             SC
T ss_pred             CC
Confidence            33

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.99  E-value=1e-07  Score=95.31  Aligned_cols=206  Identities=8%  Similarity=0.012  Sum_probs=120.1

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCc---ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..+++++|||+.++++.. +.|+.||..++   +...                     +......+..++++|++..|.+
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~---------------------l~~~~~~~~~~~~SPDG~~la~  168 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ---------------------LTHGEGFATDAKLSPKGGFVSF  168 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB---------------------CCCSSSCEEEEEECTTSSEEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE---------------------cccCCcccccccCCCCCCEEEE
Confidence            468999999996666655 89999998876   3221                     1222234678899994444555


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCc------------cccccceEEEeCCCCEEEEEeCCCcccc-------------
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGI------------PFRFCNSLDIDQSTGIIYFTDSSSQFQR-------------  167 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~d~~g~~l~v~d~~~~~~~-------------  167 (359)
                      +. .+.|+.++.++++...+.......            ....+..+.++|||++|+++.....-..             
T Consensus       169 ~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          169 IR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             EE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             Ee-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence            44 457999999988765543211100            0112477999999997777632110000             


Q ss_pred             -ccceeee-eecCCCceEEEEeCCC-CcEEEEeC---CCCCCceEEEccCCCEEEEEec----CCCEEEEEEcCCCCCcc
Q 018242          168 -RNHISVI-LSGDKTGRLMKYDPAT-KQVTVLLG---NLSFPNGVALSEDGNYILLAET----TSCRILRYWLKTSKAGT  237 (359)
Q Consensus       168 -~~~~~~~-~~~~~~g~v~~~d~~~-~~~~~~~~---~~~~p~gia~~~d~~~l~v~~~----~~~~i~~~~~~~~~~~~  237 (359)
                       ....+.. ........|+.+|.++ ++...+..   .......+++ |||+.|+++..    ....|+.+|+.....  
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--  324 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--  324 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--
Confidence             0000000 0001122688899887 77655432   2233568899 99998887654    245788898765422  


Q ss_pred             eeEeec-CCC---CCCceEECCCCCEEEEEecCC
Q 018242          238 IEIVAQ-LPG---FPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       238 ~~~~~~-~~~---~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ...+.. ...   ....++++++|+++++....+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g  358 (741)
T 2ecf_A          325 RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTG  358 (741)
T ss_dssp             EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTS
T ss_pred             EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCC
Confidence            122222 111   235789999998665554433

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.99  E-value=9.5e-07  Score=80.87  Aligned_cols=204  Identities=11%  Similarity=0.059  Sum_probs=120.4

Q ss_pred             CCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe-EE
Q 018242           34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD-LY  111 (359)
Q Consensus        34 ~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~-l~  111 (359)
                      ..-.+++++| +|++++++..++.|..||..+.+..........     .+.  ..............+++.+++++ ++
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-----CSI--GRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-----EEE--CTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-----ccc--cccccccCCCcEEEEEEccCCCcEEE
Confidence            4567999999 999888899999999999887532110000000     000  00000112334678899985554 54


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC---CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ---STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~---~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      .+...+.|..++..+++.......     ...+..+.+.+   ++..+.++                  ...+.|..+|.
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~v~~~d~  173 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNF-----EETVYSHHMSPVSTKHCLVAVG------------------TRGPKVQLCDL  173 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEECSSCSSCCEEEEE------------------ESSSSEEEEES
T ss_pred             EEeCCCeEEEeeCCCCccceeccC-----CCceeeeEeecCCCCCcEEEEE------------------cCCCeEEEEeC
Confidence            555455688999998875543331     12344566665   45534444                  23467888988


Q ss_pred             CCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee---------------cCCCCCCceE
Q 018242          189 ATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA---------------QLPGFPDNIK  252 (359)
Q Consensus       189 ~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---------------~~~~~p~~i~  252 (359)
                      .+++... +.........++++|+++.++++...++.|..|++...... ...+.               ........++
T Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  252 (408)
T 4a11_B          174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLC  252 (408)
T ss_dssp             SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred             CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEE
Confidence            7665433 33334456789999999877777778899999998643211 11110               0112234588


Q ss_pred             ECCCCCEEEEEecCCC
Q 018242          253 RSPRGGFWVGIHSRRK  268 (359)
Q Consensus       253 ~d~~G~lwv~~~~~~~  268 (359)
                      ++++|++.++....+.
T Consensus       253 ~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          253 FTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             ECTTSSEEEEEETTSC
T ss_pred             EcCCCCEEEEecCCCe
Confidence            9999986665554443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.99  E-value=1.1e-06  Score=85.93  Aligned_cols=81  Identities=14%  Similarity=0.040  Sum_probs=51.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-E
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-A  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~  113 (359)
                      ...+++++|+|+++.++..++.|..||..+++........             .+...........++++| +++.++ +
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~-------------~~~~~~h~~~V~~v~~sp-dg~~l~s~  257 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD-------------SLKNVAHSGSVFGLTWSP-DGTKIASA  257 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT-------------TSSSCSSSSCEEEEEECT-TSSEEEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc-------------cccccccCCCEEEEEECC-CCCEEEEE
Confidence            4568999999998888899999999998766432210000             000002234567899999 555444 4


Q ss_pred             eCCCcEEEEeCCCCeE
Q 018242          114 DAYFGLLKVGPEGGLA  129 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~  129 (359)
                      ...+.|..+|..+++.
T Consensus       258 s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          258 SADKTIKIWNVATLKV  273 (611)
T ss_dssp             ETTSEEEEEETTTTEE
T ss_pred             eCCCeEEEEeCCCCce
Confidence            5444577888887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.98  E-value=7.7e-07  Score=79.58  Aligned_cols=186  Identities=10%  Similarity=0.062  Sum_probs=118.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.++++.++|+.++++..++.|..||..+++...                    .+.........+++++++..+..+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~--------------------~~~~h~~~v~~~~~~~~~~~l~s~s  126 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ--------------------RFVGHKSDVMSVDIDKKASMIISGS  126 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCSSCEEEEEECTTSCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE--------------------EEccCCCcEEEEEEcCCCCEEEEEe
Confidence            34578899999988889999999999998764321                    1222234467889999444444455


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC------CCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS------TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~------g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      ..+.|..++.++.....+...     ...+..+.+.|.      +. +.++                 +...+.|..||.
T Consensus       127 ~D~~i~vwd~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~-~l~s-----------------~~~d~~i~~wd~  183 (319)
T 3frx_A          127 RDKTIKVWTIKGQCLATLLGH-----NDWVSQVRVVPNEKADDDSV-TIIS-----------------AGNDKMVKAWNL  183 (319)
T ss_dssp             TTSCEEEEETTSCEEEEECCC-----SSCEEEEEECCC------CC-EEEE-----------------EETTSCEEEEET
T ss_pred             CCCeEEEEECCCCeEEEEecc-----CCcEEEEEEccCCCCCCCcc-EEEE-----------------EeCCCEEEEEEC
Confidence            455688899887655443221     123456666663      33 3333                 133567888998


Q ss_pred             CCCcEEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          189 ATKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       189 ~~~~~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .+.+.... ..+......++++|+++ ++++...++.|..||+...+.  ...+. .......++++++|.+.++....+
T Consensus       184 ~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~~~v~~~~~sp~~~~la~~~~~~  259 (319)
T 3frx_A          184 NQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKA--MYTLS-AQDEVFSLAFSPNRYWLAAATATG  259 (319)
T ss_dssp             TTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEE--EEEEE-CCSCEEEEEECSSSSEEEEEETTE
T ss_pred             CcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE--EEEec-CCCcEEEEEEcCCCCEEEEEcCCC
Confidence            77655433 33445567899999998 456666778999999865321  11121 223345689999998777665433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.97  E-value=6e-08  Score=88.43  Aligned_cols=207  Identities=11%  Similarity=0.072  Sum_probs=120.2

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.++++.|+++ ++++..++.|..||..+++.....                .............+++++++..|..+..
T Consensus        97 V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~----------------~~~~~~h~~~V~~v~~spdg~~l~sgs~  159 (357)
T 4g56_B           97 VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN----------------KFAKYEHDDIVKTLSVFSDGTQAVSGGK  159 (357)
T ss_dssp             EEEEEEETTTE-EEEEETTSCEEEC--------CCC----------------CEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE----------------eeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence            35789999998 677778899999998765211100                0011112234678999994444555555


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.|..+|..+++.......    ....++.+++.+++..++++.                 ...+.|..||..+++...
T Consensus       160 dg~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~~~~~~~s~-----------------~~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSYNA----HSSEVNCVAACPGKDTIFLSC-----------------GEDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             TSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTCSSCEEEE-----------------ETTSCEEECCTTSSSCBC
T ss_pred             CCeEEEEECCCCcEEEEEcC----CCCCEEEEEEccCCCceeeee-----------------ccCCceEEEECCCCceee
Confidence            55688899998875433221    123567889998875355542                 234678888887665432


Q ss_pred             Ee---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccc
Q 018242          196 LL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGIS  271 (359)
Q Consensus       196 ~~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~  271 (359)
                      ..   .....+..++++|++..++++...++.|..|++...+.  ...+.........+++.++|. +.++....+.   
T Consensus       219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~---  293 (357)
T 4g56_B          219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDCT---  293 (357)
T ss_dssp             BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTSC---
T ss_pred             eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCCE---
Confidence            21   11233578899998766777777888999999865422  222222222245688988874 4444444343   


Q ss_pred             cccccCCc-cceeeecC
Q 018242          272 KLVLSFPW-IGNVLIKL  287 (359)
Q Consensus       272 ~~~~~~~~-~g~~~~~~  287 (359)
                        +.+++. .++++..+
T Consensus       294 --i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          294 --VAVLDADFSEVFRDL  308 (357)
T ss_dssp             --EEEECTTSCEEEEEC
T ss_pred             --EEEEECCCCcEeEEC
Confidence              555553 45555443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=9.1e-08  Score=83.41  Aligned_cols=187  Identities=12%  Similarity=0.003  Sum_probs=114.3

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCC-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ....+++++|+|+.++++. ++.|+.||..+ ++...+.                   .......+..+++++++..+++
T Consensus        42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~spdg~~l~~  101 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-------------------TGFATICNNDHGISPDGALYAI  101 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-------------------CTTCCCBCSCCEECTTSSEEEE
T ss_pred             cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-------------------cccccccccceEECCCCCEEEE
Confidence            4677999999999665554 68999999988 6433221                   0111133467889995555555


Q ss_pred             EeC----CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          113 ADA----YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       113 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +..    ...|+.++.++++.+.+..      ...+..++++|+|++++++...               ...-.|+.++.
T Consensus       102 ~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~  160 (297)
T 2ojh_A          102 SDKVEFGKSAIYLLPSTGGTPRLMTK------NLPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDI  160 (297)
T ss_dssp             EECTTTSSCEEEEEETTCCCCEECCS------SSSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEET
T ss_pred             EEeCCCCcceEEEEECCCCceEEeec------CCCccceEECCCCCEEEEEECC---------------CCceEEEEEEC
Confidence            552    2358888888776544322      1135678999999966655211               11236888888


Q ss_pred             CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEE-EEEe
Q 018242          189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW-VGIH  264 (359)
Q Consensus       189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lw-v~~~  264 (359)
                      +++....+......+..++++|+++.++++...++  .|+.++....   ....+.........++++++|+.. ++..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          161 DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            77776655544455678999999998887765444  4555543332   122222212223457889999744 4444

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.97  E-value=4.4e-07  Score=88.82  Aligned_cols=209  Identities=9%  Similarity=0.002  Sum_probs=125.0

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ...|..++++|+|+.+..+. ++.+..||..+.+...                    .+.........++|+| +|++.+
T Consensus        18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~--------------------~~~~h~~~v~~~~~sp-dg~~la   75 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE--------------------IYTEHSHQTTVAKTSP-SGYYCA   75 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE--------------------EECCCSSCEEEEEECT-TSSEEE
T ss_pred             cCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe--------------------EecCCCCceEEEEECC-CCcEEE
Confidence            45788999999999666655 4699999987542211                    1222334467899999 666555


Q ss_pred             -EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 -ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                       +...+.|..+|..+++...... ... ....+..++++|+|++|..+...              ....+.|+.+|.. .
T Consensus        76 sg~~d~~v~lWd~~~~~~~~~~~-~~~-~~~~v~~v~fs~dg~~l~~~~~~--------------~~~~~~v~~wd~~-~  138 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHILKTT-IPV-FSGPVKDISWDSESKRIAAVGEG--------------RERFGHVFLFDTG-T  138 (611)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEE-EEC-SSSCEEEEEECTTSCEEEEEECC--------------SSCSEEEEETTTC-C
T ss_pred             EEeCCCCEEEeECCCCcceeeEe-ecc-cCCceEEEEECCCCCEEEEEECC--------------CCceeEEEEeeCC-C
Confidence             4544458888876433211111 000 11357789999999944444211              0123568888743 2


Q ss_pred             cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccc
Q 018242          192 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS  271 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~  271 (359)
                      ....+..+......++|+|++..++++...++.|..|+....+  ....+.........+++.++|++.++....+.   
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fspdg~~las~s~D~~---  213 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT---  213 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSC---
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECCCCCEEEEEECCCc---
Confidence            2222333344567899999987667888888999999964321  11122222233466899999998776655554   


Q ss_pred             cccccCC-ccceeeecC
Q 018242          272 KLVLSFP-WIGNVLIKL  287 (359)
Q Consensus       272 ~~~~~~~-~~g~~~~~~  287 (359)
                        +..++ ..++.+..+
T Consensus       214 --i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          214 --IVLYNGVDGTKTGVF  228 (611)
T ss_dssp             --EEEEETTTCCEEEEC
T ss_pred             --EEEEECCCCcEeeee
Confidence              45554 345544433

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.96  E-value=6.4e-07  Score=82.76  Aligned_cols=154  Identities=11%  Similarity=0.061  Sum_probs=101.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ..+++++|+|+.++++..++.|+.||..+.+...                    .+. ........++++++..+.++..
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~l~~~~~  117 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK--------------------MLK-RADYTAVDTAKLQMRRFILGTT  117 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTT--------------------TSC-SCCEEEEEEECSSSCEEEEEET
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceee--------------------EEe-cCCceEEEEEecCCCEEEEEEC
Confidence            4589999999989999999999999987752100                    111 1111223356673444555555


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-  194 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-  194 (359)
                      .+.|..++.++++.......    ....+..++++|+|++|+.+                  ...+.|..||..+++.. 
T Consensus       118 dg~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~------------------s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A          118 EGDIKVLDSNFNLQREIDQA----HVSEITKLKFFPSGEALISS------------------SQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             TSCEEEECTTSCEEEEETTS----SSSCEEEEEECTTSSEEEEE------------------ETTSEEEEEETTTCCCCE
T ss_pred             CCCEEEEeCCCcceeeeccc----ccCccEEEEECCCCCEEEEE------------------eCCCeEEEEeCCCCcCce
Confidence            55688999988775443211    22467889999999944443                  23567999998765443 


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .+.........++++|+++.++ +...++.|..|++...
T Consensus       176 ~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          176 TLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTG  213 (420)
T ss_dssp             EEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEETTTT
T ss_pred             EEcCCCCcEEEEEEcCCCCEEE-EEcCCCcEEEeECCCC
Confidence            3334445568899999998544 5567789999997643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.96  E-value=7.7e-07  Score=81.51  Aligned_cols=212  Identities=12%  Similarity=0.030  Sum_probs=119.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC---CC---
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT---NG---  108 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~g---  108 (359)
                      .-.++++++  ++++++..++.|..||..+.+...             +. .....+.........++++++   ++   
T Consensus        18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~-------------~~-~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN-------------PK-DKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC-------------GG-GGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             CeEEEEecC--CeEEEEcCCCEEEEEECCCccccc-------------CC-CcceEEecCCCcEEEEEEecccccCCccc
Confidence            446888987  568888999999999998763000             00 000012222334578899983   15   


Q ss_pred             e-EEEEeCCCcEEEEeCCCCe------EEEEeecCCCccccccceEEEe----CCCCE-EEEEeCCCccccccceeeeee
Q 018242          109 D-LYIADAYFGLLKVGPEGGL------ATAVATQSEGIPFRFCNSLDID----QSTGI-IYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       109 ~-l~v~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~d----~~g~~-l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      + |+.+...+.|..++.++++      ...+...........+..+.++    +++++ ++.+                 
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-----------------  144 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-----------------  144 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-----------------
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-----------------
Confidence            4 4445555568888877655      3332211000002467889999    99994 4443                 


Q ss_pred             cCCCceEEEEeCCC------C-cEE-----EE-------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc
Q 018242          177 GDKTGRLMKYDPAT------K-QVT-----VL-------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT  237 (359)
Q Consensus       177 ~~~~g~v~~~d~~~------~-~~~-----~~-------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~  237 (359)
                       ...+.|..||..+      + ...     .+       .........++++|++  ++++...++.|..|++...+  .
T Consensus       145 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~  219 (397)
T 1sq9_A          145 -DVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--P  219 (397)
T ss_dssp             -ETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--E
T ss_pred             -eCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--e
Confidence             2245677776654      2 221     22       1123456889999998  56666778899999986431  1


Q ss_pred             eeEeec---C---CCCCCceEECCCCCEEEEEecC---CCccccccccCC-ccceeeecCCc
Q 018242          238 IEIVAQ---L---PGFPDNIKRSPRGGFWVGIHSR---RKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       238 ~~~~~~---~---~~~p~~i~~d~~G~lwv~~~~~---~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      ...+..   .   ......++++++|+++++....   +.     +..++ ..++.+..+..
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~-----i~i~d~~~~~~~~~~~~  276 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC-----ITLYETEFGERIGSLSV  276 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE-----EEEEETTTCCEEEEECB
T ss_pred             eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce-----EEEEECCCCcccceecc
Confidence            122222   1   3334668999999866655443   33     55554 35666555544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.95  E-value=2.4e-06  Score=77.60  Aligned_cols=188  Identities=11%  Similarity=0.095  Sum_probs=117.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.++++.++|++++++..++.|..||..+.+....                    +.........++++| ++..+++
T Consensus        65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~--------------------~~~~~~~v~~~~~sp-~g~~las  123 (354)
T 2pbi_B           65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA--------------------VTMPCTWVMACAYAP-SGCAIAC  123 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--------------------EECSSSCCCEEEECT-TSSEEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE--------------------EecCCCCEEEEEECC-CCCEEEE
Confidence            3456899999999889999999999999876543221                    112223456889999 6665555


Q ss_pred             eCC-CcEEEEeCCCCe-------EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          114 DAY-FGLLKVGPEGGL-------ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       114 ~~~-~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      ... +.+..++.....       ...+..     ....+..+.+.++++.+..+                  +..+.|..
T Consensus       124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~------------------s~D~~v~l  180 (354)
T 2pbi_B          124 GGLDNKCSVYPLTFDKNENMAAKKKSVAM-----HTNYLSACSFTNSDMQILTA------------------SGDGTCAL  180 (354)
T ss_dssp             ESTTSEEEEEECCCCTTCCSGGGCEEEEE-----CSSCEEEEEECSSSSEEEEE------------------ETTSEEEE
T ss_pred             eeCCCCEEEEEEeccccccccccceeeec-----cCCcEEEEEEeCCCCEEEEE------------------eCCCcEEE
Confidence            444 346666654321       111111     12346678999999834433                  23567999


Q ss_pred             EeCCCCcEEE-EeCCCCCCceEEEcc--CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEE
Q 018242          186 YDPATKQVTV-LLGNLSFPNGVALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG  262 (359)
Q Consensus       186 ~d~~~~~~~~-~~~~~~~p~gia~~~--d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~  262 (359)
                      ||.++++... +..+......+++.+  +++ ++++...++.|..||+...+  ....+.........+++.++|++.++
T Consensus       181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s  257 (354)
T 2pbi_B          181 WDVESGQLLQSFHGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYPSGDAFAS  257 (354)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeCCCCEEEE
Confidence            9988776543 333334456677776  455 56666778899999986542  12222222233456899999987776


Q ss_pred             EecCCC
Q 018242          263 IHSRRK  268 (359)
Q Consensus       263 ~~~~~~  268 (359)
                      ....+.
T Consensus       258 ~s~D~~  263 (354)
T 2pbi_B          258 GSDDAT  263 (354)
T ss_dssp             EETTSC
T ss_pred             EeCCCe
Confidence            555543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.93  E-value=2.7e-06  Score=74.83  Aligned_cols=265  Identities=12%  Similarity=0.059  Sum_probs=146.0

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      -..-.++++ +++++++++..++.|..||..+.+....                    +.........+++++++..+++
T Consensus        18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~--------------------~~~~~~~v~~~~~~~~~~~l~~   76 (313)
T 3odt_A           18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTV--------------------VYTGQGFLNSVCYDSEKELLLF   76 (313)
T ss_dssp             SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEE--------------------EEECSSCEEEEEEETTTTEEEE
T ss_pred             CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEE--------------------eecCCccEEEEEECCCCCEEEE
Confidence            345668888 8888788999999999999977643321                    1222344678999995555656


Q ss_pred             EeCCCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +...+.+..++...... +.+.. ... ....+..+.+  +++.++.+                  ...+.|..+|.. .
T Consensus        77 ~~~dg~i~~~~~~~~~~~~~~~~-~~~-~~~~i~~~~~--~~~~l~~~------------------~~d~~i~~~d~~-~  133 (313)
T 3odt_A           77 GGKDTMINGVPLFATSGEDPLYT-LIG-HQGNVCSLSF--QDGVVISG------------------SWDKTAKVWKEG-S  133 (313)
T ss_dssp             EETTSCEEEEETTCCTTSCC-CE-ECC-CSSCEEEEEE--ETTEEEEE------------------ETTSEEEEEETT-E
T ss_pred             ecCCCeEEEEEeeecCCCCcccc-hhh-cccCEEEEEe--cCCEEEEE------------------eCCCCEEEEcCC-c
Confidence            66555577777654321 00101 011 1124456666  45534444                  235678888832 2


Q ss_pred             cEEEEeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCCc
Q 018242          192 QVTVLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRKG  269 (359)
Q Consensus       192 ~~~~~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~~  269 (359)
                      ....+.........+++.+ +++. +++...++.|..|+...    ....+.. .......+++.++|.+.++...+.  
T Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~--  206 (313)
T 3odt_A          134 LVYNLQAHNASVWDAKVVSFSENK-FLTASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL--  206 (313)
T ss_dssp             EEEEEECCSSCEEEEEEEETTTTE-EEEEETTSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTSE--
T ss_pred             EEEecccCCCceeEEEEccCCCCE-EEEEECCCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCCe--
Confidence            3333334444556778877 7774 55556778999998321    1222222 233345688888888555554432  


Q ss_pred             cccccccCC-ccceeeecCCccceeeeeeccccc-------CcceEEEEEC-CCCCEEEEEEccCCceeeceEEEEEe-C
Q 018242          270 ISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLS-------GNGGMAMRIS-EQGNVLEILEEIGRKMWRSISEVEEK-D  339 (359)
Q Consensus       270 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~-~  339 (359)
                          +..++ ..++.+..+......+..+.+...       .+ +.+..++ .+++.+..+..+.+    .+..+... +
T Consensus       207 ----i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~  277 (313)
T 3odt_A          207 ----IKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGED-RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSN  277 (313)
T ss_dssp             ----EEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETT-SEEEEECTTTCCEEEEEECSSS----CEEEEEECTT
T ss_pred             ----EEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecC-CEEEEEECCCCceeEEEeccCc----eEEEEEEccC
Confidence                45554 345555554433333333333221       22 3444555 33455555543322    34444443 6


Q ss_pred             CEEEEecCCCCeEEEEcCC
Q 018242          340 GNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       340 g~l~ig~~~~~~l~~~~~~  358 (359)
                      +++..++. +..|.++++.
T Consensus       278 ~~~~~~~~-dg~i~iw~~~  295 (313)
T 3odt_A          278 GDIIVGSS-DNLVRIFSQE  295 (313)
T ss_dssp             SCEEEEET-TSCEEEEESC
T ss_pred             CCEEEEeC-CCcEEEEeCC
Confidence            67666664 6678888765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.93  E-value=1.7e-07  Score=93.15  Aligned_cols=190  Identities=12%  Similarity=0.093  Sum_probs=116.2

Q ss_pred             CceEEEccCCCeeEEec---------------------------------CCCEEEEEEcCCcceEEEeecCCCCCCCCC
Q 018242           36 PESLAFDALGEGPYTGV---------------------------------SDGRIIKWHQDQRRWLHFARTSPNRDGCEG   82 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   82 (359)
                      +.++.++|||+.+++..                                 ....|+.||..+++...+.           
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-----------  251 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-----------  251 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-----------
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-----------
Confidence            58999999999766654                                 3357889998876433221           


Q ss_pred             CcccccccccccCCcceEEEEecCCCeEEEEeCCC-----cEEEEeCCCC-eEEEEeecCCCccccccceEEEeC--CCC
Q 018242           83 AYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-----GLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQ--STG  154 (359)
Q Consensus        83 ~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-----~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~--~g~  154 (359)
                             ........+..+++++++..|+++....     .|+.+|..++ ..+.+..............++++|  +|+
T Consensus       252 -------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~  324 (706)
T 2z3z_A          252 -------TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ  324 (706)
T ss_dssp             -------CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred             -------cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence                   0001123356789999445577654332     5889999988 555443211111111246789999  999


Q ss_pred             EEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCce-EEEccCCCEEEEEecCCC----EEEEEE
Q 018242          155 IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG-VALSEDGNYILLAETTSC----RILRYW  229 (359)
Q Consensus       155 ~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~g-ia~~~d~~~l~v~~~~~~----~i~~~~  229 (359)
                      ++|+++.                .....|+.++.+++..+.+..+...... ++++||++.+|++...++    .|++++
T Consensus       325 ~l~~~~~----------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          325 FIWQSRR----------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             EEEEECT----------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             EEEEEcc----------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            5555522                1234789998766555554333222334 789999999988887765    888888


Q ss_pred             cCCCCCcceeEeecCCCCCCceEECCCCCEEEEE
Q 018242          230 LKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~  263 (359)
                      +++..   .+.+.. ......++++++|+.++..
T Consensus       389 ~~~~~---~~~l~~-~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          389 IKGGK---TKDLTP-ESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             TTCCC---CEESCC-SSSEEEEEECTTSSEEEEE
T ss_pred             cCCCC---ceeccC-CCceEEEEECCCCCEEEEE
Confidence            76532   222221 1224568889999865544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.93  E-value=2.2e-07  Score=84.21  Aligned_cols=192  Identities=9%  Similarity=-0.032  Sum_probs=118.5

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++++|+.++++..++.|..||..+++.....                  ...........+++++++..++++
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~~l~~~  114 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL------------------VILRINRAARCVRWAPNEKKFAVG  114 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE------------------ECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE------------------EeecCCCceeEEEECCCCCEEEEE
Confidence            35568999999998888888999999998776433221                  112223446789999955556666


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC----
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA----  189 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~----  189 (359)
                      ...+.|..++.+++................+..+++++++++++.+                  ...+.|..||..    
T Consensus       115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~~~d~~~~~~  176 (372)
T 1k8k_C          115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG------------------SCDFKCRIFSAYIKEV  176 (372)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE------------------ETTSCEEEEECCCTTT
T ss_pred             eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEE------------------cCCCCEEEEEcccccc
Confidence            6555677777765541111111111112357789999999944443                  224567778742    


Q ss_pred             --------------CCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEEC
Q 018242          190 --------------TKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS  254 (359)
Q Consensus       190 --------------~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d  254 (359)
                                    .++... +.........++++|+++.++ +...++.|..|++...+  ....+.........++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~  253 (372)
T 1k8k_C          177 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVSHDSTVCLADADKKM--AVATLASETLPLLAVTFI  253 (372)
T ss_dssp             SCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE-EEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEE
T ss_pred             cccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE-EEeCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEe
Confidence                          333332 223334567899999998554 45577899999986442  122232222234668888


Q ss_pred             CCCCEEEEEe
Q 018242          255 PRGGFWVGIH  264 (359)
Q Consensus       255 ~~G~lwv~~~  264 (359)
                      ++|.+.++..
T Consensus       254 ~~~~~l~~~~  263 (372)
T 1k8k_C          254 TESSLVAAGH  263 (372)
T ss_dssp             ETTEEEEEET
T ss_pred             cCCCEEEEEe
Confidence            9998776663

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.93  E-value=6.8e-07  Score=82.50  Aligned_cols=193  Identities=10%  Similarity=-0.042  Sum_probs=123.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...++.+  +++.++++..++.|..||.........                   .+........++.+++++..++++.
T Consensus       178 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          178 RVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG-------------------TLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             CEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-------------------EEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee-------------------EEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            4446666  456688899999999999874321111                   1222334567899999444455556


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..+|..+++.......    ....+..++++|++..++++..+               ...+.|..||..+++..
T Consensus       237 ~d~~v~iwd~~~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          237 NDNVVQIWDARSSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARV  297 (401)
T ss_dssp             TTSCEEEEETTCSSEEEEECC----CSSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEE
T ss_pred             CCCeEEEccCCCCCccEEecC----CcceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEE
Confidence            555688999987764332211    12356789999987646666321               23568999998877665


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEE-ecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLA-ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ...........++++++++.++.+ +..++.|..|++..........+....+....++++++|.+.++....+
T Consensus       298 ~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          298 NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             EEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            444444557899999999976665 4467899999986542221111222234456789999998766555444

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.90  E-value=1.2e-06  Score=77.58  Aligned_cols=203  Identities=10%  Similarity=-0.026  Sum_probs=122.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.++.+.++|+.++++..++.|..||..+++...                    .+.........+++++++..++.+..
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~--------------------~~~~h~~~v~~~~~~~~~~~l~sgs~  117 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--------------------DFEAHPDYIRSIAVHPTKPYVLSGSD  117 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--------------------EEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE--------------------EEeCCCCcEEEEEEcCCCCEEEEECC
Confidence            3578899999988899999999999998764321                    22223344678999994444555555


Q ss_pred             CCcEEEEeCCCCe-EEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          116 YFGLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       116 ~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      .+.|..+|.+++. ......   + ....+..++++| +++ ++++-                 ...+.|..||..++..
T Consensus       118 D~~v~lWd~~~~~~~~~~~~---~-h~~~v~~v~~~p~~~~-~l~sg-----------------s~D~~v~iwd~~~~~~  175 (304)
T 2ynn_A          118 DLTVKLWNWENNWALEQTFE---G-HEHFVMCVAFNPKDPS-TFASG-----------------CLDRTVKVWSLGQSTP  175 (304)
T ss_dssp             TSCEEEEEGGGTTEEEEEEC---C-CCSCEEEEEECTTCTT-EEEEE-----------------ETTSEEEEEETTCSSC
T ss_pred             CCeEEEEECCCCcchhhhhc---c-cCCcEEEEEECCCCCC-EEEEE-----------------eCCCeEEEEECCCCCc
Confidence            5568888987663 222211   1 123567899998 566 55541                 3356788888765432


Q ss_pred             E-EEe-CCCCCCceEEEcc--CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCc
Q 018242          194 T-VLL-GNLSFPNGVALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKG  269 (359)
Q Consensus       194 ~-~~~-~~~~~p~gia~~~--d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~  269 (359)
                      . .+. ........+++.+  +++ ++++...++.|..||+....  ....+.........+++.+++.+.++....+. 
T Consensus       176 ~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~-  251 (304)
T 2ynn_A          176 NFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-  251 (304)
T ss_dssp             SEEEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTSC-
T ss_pred             cceeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCCEEEEEcCCCe-
Confidence            2 222 2223345566765  555 56667788999999986431  11222222222345788999987776655553 


Q ss_pred             cccccccCCc-cceeeecCC
Q 018242          270 ISKLVLSFPW-IGNVLIKLP  288 (359)
Q Consensus       270 ~~~~~~~~~~-~g~~~~~~~  288 (359)
                          +..++. +++.+..+.
T Consensus       252 ----i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          252 ----LKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             ----EEEEETTTCCEEEEEC
T ss_pred             ----EEEEECCCCceeeecc
Confidence                455443 455554443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.90  E-value=1.3e-06  Score=78.44  Aligned_cols=195  Identities=13%  Similarity=-0.029  Sum_probs=112.2

Q ss_pred             EEeeCCCCCCceEEEccCCCeeE-EecC---CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           27 QYQIEGAIGPESLAFDALGEGPY-TGVS---DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~-~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      .+..+--....++++.|+|..+. ++..   ++.|..||..+++.....                  .. ........++
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~-~~~~~v~~~~   72 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EI-EKAKPIKCGT   72 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EE-EESSCEEEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------ee-cccCcEEEEE
Confidence            44344345677999999996454 4443   789999999887544321                  11 1223457888


Q ss_pred             EecCC---CeEEEEeCCCcEEEEeCCCCe--EEEEeecCCCccccccceE------EEeCCCCEEEEEeCCCccccccce
Q 018242          103 FNKTN---GDLYIADAYFGLLKVGPEGGL--ATAVATQSEGIPFRFCNSL------DIDQSTGIIYFTDSSSQFQRRNHI  171 (359)
Q Consensus       103 ~~~~~---g~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l------~~d~~g~~l~v~d~~~~~~~~~~~  171 (359)
                      ++++.   ..++.+...+.|..++..+++  ...+..     ....+..+      +++++++.++.+            
T Consensus        73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~s~~~~~l~~~------------  135 (357)
T 3i2n_A           73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG-----HKEIINAIDGIGGLGIGEGAPEIVTG------------  135 (357)
T ss_dssp             CTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC-----CSSCEEEEEEESGGGCC-CCCEEEEE------------
T ss_pred             EcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe-----cccceEEEeeccccccCCCccEEEEE------------
Confidence            88852   556666655568899988765  222211     11234445      456888844433            


Q ss_pred             eeeeecCCCceEEEEeCCCCc--EEEEeCCC----CCCceEE----EccCCCEEEEEecCCCEEEEEEcCCCCCcceeEe
Q 018242          172 SVILSGDKTGRLMKYDPATKQ--VTVLLGNL----SFPNGVA----LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV  241 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~----~~p~gia----~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~  241 (359)
                            ...+.|..||..++.  ...+....    .....++    ++++++. +++...++.|..|++.....   ...
T Consensus       136 ------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~---~~~  205 (357)
T 3i2n_A          136 ------SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV-VCAGYDNGDIKLFDLRNMAL---RWE  205 (357)
T ss_dssp             ------ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE-EEEEETTSEEEEEETTTTEE---EEE
T ss_pred             ------eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE-EEEEccCCeEEEEECccCce---eee
Confidence                  234678889887654  23332111    1234455    6788885 45555678999999865422   112


Q ss_pred             ecCCCCCCceEECC---CCCEEEEEecCC
Q 018242          242 AQLPGFPDNIKRSP---RGGFWVGIHSRR  267 (359)
Q Consensus       242 ~~~~~~p~~i~~d~---~G~lwv~~~~~~  267 (359)
                      .........+++++   +|++.++....+
T Consensus       206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          206 TNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            22334456788888   787666554444

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.89  E-value=1.2e-06  Score=79.23  Aligned_cols=159  Identities=9%  Similarity=0.029  Sum_probs=100.4

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++|+|+++.++..++.+..|+..+.......                  .+.........+++++++..|..+.
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~------------------~~~~h~~~v~~v~~sp~~~~l~s~s  124 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT------------------TLEGHENEVKSVAWAPSGNLLATCS  124 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEE------------------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEE------------------EccCCCCCceEEEEeCCCCEEEEEE
Confidence            3458999999998888999999999998776433221                  2223334567899999444444455


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..++..++........... ....+..++++|+++ +.++-                 ...+.|..|+..++...
T Consensus       125 ~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~-~l~s~-----------------s~d~~i~~w~~~~~~~~  185 (345)
T 3fm0_A          125 RDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQE-LLASA-----------------SYDDTVKLYREEEDDWV  185 (345)
T ss_dssp             TTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSSS-CEEEE-----------------ETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCCC-EEEEE-----------------eCCCcEEEEEecCCCEE
Confidence            555688888765432111111111 123567899999999 44441                 22456777776555432


Q ss_pred             ---EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          195 ---VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       195 ---~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                         .+.........++|+|+++. +++...++.|..|+..
T Consensus       186 ~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          186 CCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEEEE
T ss_pred             EEEEecCCCCceEEEEECCCCCE-EEEEeCCCeEEEeccc
Confidence               23334455678999999985 5566677899999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.89  E-value=2.3e-06  Score=78.20  Aligned_cols=157  Identities=10%  Similarity=0.008  Sum_probs=105.8

Q ss_pred             CCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ...++++.+ +++.++++..++.|..||..+.....+..                  ..........+++++++..++.+
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~l~~~  181 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAK------------------TDSWDYWYCCVDVSVSRQMLATG  181 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEEC------------------CCCSSCCEEEEEEETTTTEEEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEec------------------cCCCCCCeEEEEECCCCCEEEEE
Confidence            445889999 67878888899999999998764444421                  11112346789999955555556


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCC-EEEEEeCCCccccccceeeeeecCCCceEEEEeCCC--
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTG-IIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT--  190 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--  190 (359)
                      ...+.|..+|..+.....+..     ....+..++++++++ .++.+                  ...+.|..||..+  
T Consensus       182 ~~d~~i~i~d~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~------------------~~d~~i~iwd~~~~~  238 (383)
T 3ei3_B          182 DSTGRLLLLGLDGHEIFKEKL-----HKAKVTHAEFNPRCDWLMATS------------------SVDATVKLWDLRNIK  238 (383)
T ss_dssp             ETTSEEEEEETTSCEEEEEEC-----SSSCEEEEEECSSCTTEEEEE------------------ETTSEEEEEEGGGCC
T ss_pred             CCCCCEEEEECCCCEEEEecc-----CCCcEEEEEECCCCCCEEEEE------------------eCCCEEEEEeCCCCC
Confidence            655568889987655444322     123577899999998 34444                  2346788888765  


Q ss_pred             --CcEEEEeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCC
Q 018242          191 --KQVTVLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       191 --~~~~~~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                        +..............++++| +++.++ +...++.|..|++...
T Consensus       239 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~-~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLL-TTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             STTCEEEEEECSSCEEEEEECTTTSCEEE-EEESSSEEEEEETTBT
T ss_pred             cccceEEEecCCCceEEEEEcCCCCCEEE-EEcCCCcEEEEECCCC
Confidence              44443334445568899999 988554 5556789999998654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.89  E-value=5.1e-06  Score=74.89  Aligned_cols=194  Identities=10%  Similarity=-0.015  Sum_probs=113.7

Q ss_pred             CceEEE-----cc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           36 PESLAF-----DA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        36 p~~i~~-----~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      -.++++     .+ +|++++++..++.|..||..+.+....             .+.....+.........+++++ ++.
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------~~~~~~~l~~h~~~V~~~~~~~-~~~   89 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------FGIPHKALTGHNHFVSDLALSQ-ENC   89 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------------SEEEEEEECCCSSCEEEEEECS-STT
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------------cccccchhccCCCceEEEEECC-CCC
Confidence            357777     55 888888999999999999865310000             0000001222233467889999 555


Q ss_pred             EEE-EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          110 LYI-ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       110 l~v-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +.+ +...+.|..+|..+++.......    ....+..++++|+|++|..+                  +..+.|..||.
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~----h~~~v~~v~~sp~~~~l~s~------------------~~d~~i~~wd~  147 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFVG----HQSEVYSVAFSPDNRQILSA------------------GAEREIKLWNI  147 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEEC----CCSCEEEEEECSSTTEEEEE------------------ETTSCEEEEES
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcC----CCCcEEEEEECCCCCEEEEE------------------cCCCEEEEEec
Confidence            444 45445588889987764322211    12356789999999944333                  23467888887


Q ss_pred             CCCcEEEEe---CCCCCCceEEEccCCC---------EEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCC
Q 018242          189 ATKQVTVLL---GNLSFPNGVALSEDGN---------YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  256 (359)
Q Consensus       189 ~~~~~~~~~---~~~~~p~gia~~~d~~---------~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  256 (359)
                      .+.......   ........++++|++.         .++++...++.|..|+...   .....+.........++++++
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~h~~~v~~~~~s~~  224 (343)
T 2xzm_R          148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFKAHESNVNHLSISPN  224 (343)
T ss_dssp             SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEECCSSCEEEEEECTT
T ss_pred             cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEcCccccceEEEECCC
Confidence            643322222   1222345778888762         2566777889999999422   111222222333466899999


Q ss_pred             CCEEEEEecCCC
Q 018242          257 GGFWVGIHSRRK  268 (359)
Q Consensus       257 G~lwv~~~~~~~  268 (359)
                      |++.++....+.
T Consensus       225 g~~l~sgs~dg~  236 (343)
T 2xzm_R          225 GKYIATGGKDKK  236 (343)
T ss_dssp             SSEEEEEETTCE
T ss_pred             CCEEEEEcCCCe
Confidence            987765555443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.88  E-value=1.4e-06  Score=79.92  Aligned_cols=206  Identities=15%  Similarity=0.145  Sum_probs=120.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.+++++|+|++++++..++.|..||..+++...                    .+.........+++++ +++++++
T Consensus        67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--------------------~~~~h~~~v~~~~~s~-~g~~las  125 (380)
T 3iz6_a           67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--------------------AIKLHCPWVMECAFAP-NGQSVAC  125 (380)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--------------------EEECCCTTCCCCEECT-TSSEEEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--------------------EEecCCCCEEEEEECC-CCCEEEE
Confidence            345689999999988899999999999998764322                    1112223356788999 5665555


Q ss_pred             -eCCCcEEEEeCCCCeEEE----EeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          114 -DAYFGLLKVGPEGGLATA----VATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       114 -~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                       ...+.+..++..+.....    ......+ ....+..+.+.+++....++                 ++..+.|..||.
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g-h~~~v~~~~~~~~~~~~l~s-----------------~s~D~~i~~wd~  187 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNMPVSRVLTG-HKGYASSCQYVPDQETRLIT-----------------GSGDQTCVLWDV  187 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSSTTCCBCCC-CSSCCCCCBCCSSSSSCEEE-----------------ECTTSCEEEECT
T ss_pred             eeCCCcEEEEECCCCccccCCccceeeccC-CCcceEEEEEecCCCCEEEE-----------------ECCCCcEEEEEc
Confidence             334457777765432100    0000011 11234556666654313333                 134567999998


Q ss_pred             CCCcEEEEeC------CCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242          189 ATKQVTVLLG------NLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       189 ~~~~~~~~~~------~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  261 (359)
                      .+++......      .......+++.+ +++ ++++...++.|..||+..... ....+....+....+++.++|++.+
T Consensus       188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~  265 (380)
T 3iz6_a          188 TTGQRISIFGSEFPSGHTADVLSLSINSLNAN-MFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFG  265 (380)
T ss_dssp             TTCCEEEEECCCSSSSCCSCEEEEEECSSSCC-EEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECTTSSEEE
T ss_pred             CCCcEEEEeecccCCCCccCeEEEEeecCCCC-EEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEecCCCeEE
Confidence            8776543321      122335677766 555 777888889999999863211 1223332334457799999998777


Q ss_pred             EEecCCCccccccccCCc-cceeee
Q 018242          262 GIHSRRKGISKLVLSFPW-IGNVLI  285 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~-~g~~~~  285 (359)
                      +....+.     +..++. .++.+.
T Consensus       266 s~s~D~~-----i~lwd~~~~~~~~  285 (380)
T 3iz6_a          266 TGSDDGT-----CRLFDMRTGHQLQ  285 (380)
T ss_dssp             EECSSSC-----EEEEETTTTEEEE
T ss_pred             EEcCCCe-----EEEEECCCCcEEE
Confidence            6655554     555543 454443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.88  E-value=7.3e-07  Score=80.73  Aligned_cols=150  Identities=13%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             ceEEEEecCCCeEEEEe-------------CCCcEEEEeCC--CCeEEEEeecC--CCccccccceEEEeC--CCC-EEE
Q 018242           98 PLGLCFNKTNGDLYIAD-------------AYFGLLKVGPE--GGLATAVATQS--EGIPFRFCNSLDIDQ--STG-IIY  157 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~-------------~~~~i~~~~~~--~~~~~~~~~~~--~~~~~~~~~~l~~d~--~g~-~l~  157 (359)
                      |-.|++++ +|.+|++.             ..+.|+++|++  +.+.+.+....  .....-.|++|.+.+  +|+ +||
T Consensus        52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            55677887 88888886             23459999987  34554443221  112234788988765  453 599


Q ss_pred             EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe----CCCCCCceEEEccCCCEEEEEec-------------
Q 018242          158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL----GNLSFPNGVALSEDGNYILLAET-------------  220 (359)
Q Consensus       158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~~~~~p~gia~~~d~~~l~v~~~-------------  220 (359)
                      |.+....             .....|++++++++....+.    .....||.++++++|+ +|+++.             
T Consensus       131 Vvnh~~~-------------~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~  196 (355)
T 3sre_A          131 VVNHPGS-------------SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEM  196 (355)
T ss_dssp             EEECSTT-------------CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHH
T ss_pred             EEECCCC-------------CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchh
Confidence            9976421             12335889998765544332    2356799999999986 788764             


Q ss_pred             ----CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCC
Q 018242          221 ----TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       221 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~  267 (359)
                          ..++|++++..     ..+....--..|+||++++||+ +|++....+
T Consensus       197 ~~~~~~g~vyr~d~~-----~~~~~~~~l~~pNGia~spDg~~lYvadt~~~  243 (355)
T 3sre_A          197 HLGLAWSFVTYYSPN-----DVRVVAEGFDFANGINISPDGKYVYIAELLAH  243 (355)
T ss_dssp             HTTCCCEEEEEECTT-----CCEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             hccCCccEEEEEECC-----eEEEeecCCcccCcceECCCCCEEEEEeCCCC
Confidence                24678888742     2233333123599999999995 999887654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.2e-06  Score=82.28  Aligned_cols=159  Identities=13%  Similarity=0.129  Sum_probs=101.9

Q ss_pred             CCceEEEccCCCee-EEecCCCEEEEEEcC--CcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           35 GPESLAFDALGEGP-YTGVSDGRIIKWHQD--QRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        35 ~p~~i~~~~~G~~l-~~~~~~~~i~~~d~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ...+++++++|+.+ +++..++.|..||..  +++.. .+.                   .......+..+++++++..|
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~sp~~~~l  164 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------------RFCFSKRPNAISIAEDDTTV  164 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-------------------EEECSSCEEEEEECTTSSEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-------------------cccCCCCceEEEEcCCCCEE
Confidence            35689999999975 567788999999987  54322 211                   01222446789999955566


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE-EeecCCCccccccceEEEeCC---CCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          111 YIADAYFGLLKVGPEGGLATA-VATQSEGIPFRFCNSLDIDQS---TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~d~~---g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ++++..+.++.++..+++... ......+ ....+..++++|+   +++|+.+                  ...+.|..|
T Consensus       165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~------------------~~d~~i~vw  225 (450)
T 2vdu_B          165 IIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITS------------------DRDEHIKIS  225 (450)
T ss_dssp             EEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEE------------------ETTSCEEEE
T ss_pred             EEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEE------------------cCCCcEEEE
Confidence            667665568888887654321 0000100 1235778999999   8734333                  224578888


Q ss_pred             eCCCCcEEEE-e-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          187 DPATKQVTVL-L-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       187 d~~~~~~~~~-~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      |..++..... . ........++|+ +++.++ +...++.|..|++...
T Consensus       226 d~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~-s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          226 HYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL-SAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             EESCTTCEEEECCCCSSCEEEEEEC-STTEEE-EEESSSEEEEEETTTC
T ss_pred             ECCCCceeeeeecCCCCceEEEEEC-CCCEEE-EEeCCCeEEEEECCCC
Confidence            8776654322 2 334556889999 888555 5557789999998654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.87  E-value=2.1e-06  Score=78.44  Aligned_cols=261  Identities=12%  Similarity=0.089  Sum_probs=136.1

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcc-eEEEEecCCCeEEEEeCCCcEEE
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRP-LGLCFNKTNGDLYIADAYFGLLK  121 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p-~gi~~~~~~g~l~v~~~~~~i~~  121 (359)
                      +++ +|++..++.|+.+|+++++...........            ..... .... ..+.++  ++.+|+++..+.|+.
T Consensus        53 ~~~-v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~v~v~~~~g~l~a  117 (376)
T 3q7m_A           53 DNV-VYAADRAGLVKALNADDGKEIWSVSLAEKD------------GWFSKEPALLSGGVTVS--GGHVYIGSEKAQVYA  117 (376)
T ss_dssp             TTE-EEEECTTSEEEEEETTTCCEEEEEECCC---------------CCSCCCCCEEEEEEEE--TTEEEEEETTSEEEE
T ss_pred             CCE-EEEEcCCCeEEEEEccCCceeeeecCcccc------------ccccccCcccccCceEe--CCEEEEEcCCCEEEE
Confidence            455 899988899999999887654322111000            00000 0111 223333  899999987778999


Q ss_pred             EeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC
Q 018242          122 VGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS  201 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~  201 (359)
                      +|.++|+....... ....   ....+++ ++. +|++.                  ..+.|+.+|+.+++.........
T Consensus       118 ~d~~tG~~~W~~~~-~~~~---~~~p~~~-~~~-v~v~~------------------~~g~l~~~d~~tG~~~W~~~~~~  173 (376)
T 3q7m_A          118 LNTSDGTVAWQTKV-AGEA---LSRPVVS-DGL-VLIHT------------------SNGQLQALNEADGAVKWTVNLDM  173 (376)
T ss_dssp             EETTTCCEEEEEEC-SSCC---CSCCEEE-TTE-EEEEC------------------TTSEEEEEETTTCCEEEEEECCC
T ss_pred             EECCCCCEEEEEeC-CCce---EcCCEEE-CCE-EEEEc------------------CCCeEEEEECCCCcEEEEEeCCC
Confidence            99998876532221 1111   1112232 566 99982                  34679999998887765432211


Q ss_pred             C------CceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCC---------CCCceEECCCCCEEEEEecC
Q 018242          202 F------PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---------FPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       202 ~------p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~p~~i~~d~~G~lwv~~~~~  266 (359)
                      .      ....++. ++ .+|+. +.++.|+.++....+...........+         ......+ .+|.+|+++..+
T Consensus       174 ~~~~~~~~~~~~~~-~~-~v~~g-~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g  249 (376)
T 3q7m_A          174 PSLSLRGESAPTTA-FG-AAVVG-GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNG  249 (376)
T ss_dssp             -----CCCCCCEEE-TT-EEEEC-CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTS
T ss_pred             CceeecCCCCcEEE-CC-EEEEE-cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCc
Confidence            1      1223333 33 45554 566789999975442211111000000         0011222 357899987554


Q ss_pred             CCccccccccCC-ccceeeecCCccceee----eeecccccCcceEEEEECC-CCCEEEEEEccCCceeeceEEEEEeCC
Q 018242          267 RKGISKLVLSFP-WIGNVLIKLPIDIVKI----HSSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDG  340 (359)
Q Consensus       267 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g  340 (359)
                      .      +..++ .+|+.+...+.+....    ....+-.... +.++++|. +|+.+..+....+.   ........++
T Consensus       250 ~------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~  319 (376)
T 3q7m_A          250 N------LTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQN-DRVMALTIDGGVTLWTQSDLLHR---LLTSPVLYNG  319 (376)
T ss_dssp             C------EEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETT-CCEEEEETTTCCEEEEECTTTTS---CCCCCEEETT
T ss_pred             E------EEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCC-CeEEEEECCCCcEEEeecccCCC---cccCCEEECC
Confidence            3      55554 4787776654432110    0011111222 46777775 46666554321121   1222233588


Q ss_pred             EEEEecCCCCeEEEEcCC
Q 018242          341 NLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       341 ~l~ig~~~~~~l~~~~~~  358 (359)
                      +||+++. +..|..++..
T Consensus       320 ~l~v~~~-~g~l~~~d~~  336 (376)
T 3q7m_A          320 NLVVGDS-EGYLHWINVE  336 (376)
T ss_dssp             EEEEECT-TSEEEEEETT
T ss_pred             EEEEEeC-CCeEEEEECC
Confidence            9999986 5678888764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.87  E-value=1.4e-07  Score=91.62  Aligned_cols=185  Identities=11%  Similarity=-0.041  Sum_probs=111.9

Q ss_pred             CCceEEEccCCCeeEEecC---C--CEEEEEEc--CCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242           35 GPESLAFDALGEGPYTGVS---D--GRIIKWHQ--DQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN  107 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~---~--~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (359)
                      ...+++++|| +++|++..   +  ..|+.++.  ++... .                     +... ......++++++
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~---------------------l~~~-~~~~~~~~s~dg  121 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-R---------------------LEAV-KPMRILSGVDTG  121 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-E---------------------CTTS-CSBEEEEEEECS
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-c---------------------ccCC-CCceeeeeCCCC
Confidence            3456778888 66776553   2  26777777  44311 1                     1111 112345667644


Q ss_pred             Ce-EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          108 GD-LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       108 g~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +. ++++...+++..++.++++.+.+... .     . ..++++|||++|+.+...              ......|+.+
T Consensus       122 ~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~-----~-~~~~~spDG~~la~~~~~--------------~~~~~~i~~~  180 (582)
T 3o4h_A          122 EAVVFTGATEDRVALYALDGGGLRELARL-P-----G-FGFVSDIRGDLIAGLGFF--------------GGGRVSLFTS  180 (582)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEEEEEEE-S-----S-CEEEEEEETTEEEEEEEE--------------ETTEEEEEEE
T ss_pred             CeEEEEecCCCCceEEEccCCcEEEeecC-C-----C-ceEEECCCCCEEEEEEEc--------------CCCCeEEEEE
Confidence            34 55555556677889888887665431 1     1 678999999955544110              1112469999


Q ss_pred             eCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCCCCCCceE--------ECCC
Q 018242          187 DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIK--------RSPR  256 (359)
Q Consensus       187 d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~--------~d~~  256 (359)
                      |.++++.+.+.........++|+|||+.++.++ .++  .|++|++++.+   ...+......+.+++        +++|
T Consensus       181 d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~spd  256 (582)
T 3o4h_A          181 NLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE-TAREARLVTVDPRDGS---VEDLELPSKDFSSYRPTAITWLGYLPD  256 (582)
T ss_dssp             ETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEEECTTTCC---EEECCCSCSHHHHHCCSEEEEEEECTT
T ss_pred             cCCCCCceEeecCCCccccceECCCCCEEEEcc-CCCeeEEEEEcCCCCc---EEEccCCCcChhhhhhccccceeEcCC
Confidence            998888776654444457899999999888444 445  89999976542   222211222233455        9999


Q ss_pred             CCEEEEEecCCC
Q 018242          257 GGFWVGIHSRRK  268 (359)
Q Consensus       257 G~lwv~~~~~~~  268 (359)
                      |.++++....+.
T Consensus       257 g~~~~~~~~~g~  268 (582)
T 3o4h_A          257 GRLAVVARREGR  268 (582)
T ss_dssp             SCEEEEEEETTE
T ss_pred             CcEEEEEEcCCc
Confidence            988887665553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.87  E-value=1.9e-07  Score=85.52  Aligned_cols=180  Identities=8%  Similarity=-0.008  Sum_probs=106.6

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc--eEEEEecCCCeEEEEe-
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP--LGLCFNKTNGDLYIAD-  114 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~gi~~~~~~g~l~v~~-  114 (359)
                      +++++|||+.++....+..|+.+|..+++.+.+...                    .....  ....+++ ++.++++. 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~--------------------~~~~~~~~~~~~~~-dg~~l~~~~  143 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV--------------------PAEWVGYGTWVANS-DCTKLVGIE  143 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC--------------------CTTEEEEEEEEECT-TSSEEEEEE
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec--------------------hhhcccccceeECC-CCCeecccc
Confidence            678999999787777778999999998754433211                    00111  1123455 56655531 


Q ss_pred             ----------------------CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccce
Q 018242          115 ----------------------AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHI  171 (359)
Q Consensus       115 ----------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~  171 (359)
                                            ....|+++|.++++.+.+...     ...+..+.++| +|++|.++.....       
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~-------  211 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-----NQWLGHPIYRPYDDSTVAFCHEGPH-------  211 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCT-------
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-----CccccccEECCCCCCEEEEEEecCC-------
Confidence                                  123589999998887665431     12456789999 9986655532100       


Q ss_pred             eeeeecCCCceEEEEeCCCCcEEEEeCCCC--CCceEEEccCCCEE-EEEecCCC---EEEEEEcCCCCCcceeEeecCC
Q 018242          172 SVILSGDKTGRLMKYDPATKQVTVLLGNLS--FPNGVALSEDGNYI-LLAETTSC---RILRYWLKTSKAGTIEIVAQLP  245 (359)
Q Consensus       172 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--~p~gia~~~d~~~l-~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~  245 (359)
                           ......|+.++.+++..+.+.....  .....+++|||+.+ |++.....   .|++|+++..+.   +.+...+
T Consensus       212 -----~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~---~~l~~~~  283 (388)
T 3pe7_A          212 -----DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN---RQLTSMP  283 (388)
T ss_dssp             -----TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE---EEEEEEC
T ss_pred             -----CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce---EEEEcCC
Confidence                 0113479999988766655543221  23467899999976 44443332   399999765432   2222222


Q ss_pred             C------CCCceEECCCCC
Q 018242          246 G------FPDNIKRSPRGG  258 (359)
Q Consensus       246 ~------~p~~i~~d~~G~  258 (359)
                      +      .+++++++++|+
T Consensus       284 ~~~~~~~~~~~~~~spdg~  302 (388)
T 3pe7_A          284 ACSHLMSNYDGSLMVGDGS  302 (388)
T ss_dssp             CEEEEEECTTSSEEEEEEC
T ss_pred             CceeeeecCCCCeEccCCC
Confidence            1      145566667665

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.86  E-value=9.2e-07  Score=81.57  Aligned_cols=198  Identities=11%  Similarity=-0.006  Sum_probs=121.3

Q ss_pred             CceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE-EE
Q 018242           36 PESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY-IA  113 (359)
Q Consensus        36 p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~-v~  113 (359)
                      ..++++++ ++++++++..++.|..||..+++.....         ..    .+..+.........+++++++.+++ .+
T Consensus        84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~---------~~----~~~~~~~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL---------RE----PVITLEGHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB---------CS----CSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred             EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc---------CC----ceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence            35899999 8998888999999999998775211000         00    0002222334567899999443444 45


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|..+++....... . .....+..++++++|++|+.+                  ...+.|..||..+++.
T Consensus       151 ~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVLTLGP-D-VHPDTIYSVDWSRDGALICTS------------------CRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             ETTSCEEEEETTTTEEEEEECT-T-TCCSCEEEEEECTTSSCEEEE------------------ETTSEEEEEETTTTEE
T ss_pred             cCCCEEEEEECCCCCccEEEec-C-CCCCceEEEEECCCCCEEEEE------------------ecCCcEEEEeCCCCce
Confidence            5555688999988865433210 1 112357789999999944444                  2356899999887765


Q ss_pred             EEEe-CC--CCCCceEEEccCCCEEEEEe---cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE-EEecC
Q 018242          194 TVLL-GN--LSFPNGVALSEDGNYILLAE---TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSR  266 (359)
Q Consensus       194 ~~~~-~~--~~~p~gia~~~d~~~l~v~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv-~~~~~  266 (359)
                      .... ..  ...+..++++++++. +++.   ..++.|..|++....................++++++|+..+ +....
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d  289 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEGKI-LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD  289 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTTEE-EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred             eeeeccCCCCCcceEEEEcCCCcE-EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence            4433 22  223678999999874 4444   577899999986543211111111223356688899998654 44333


Q ss_pred             C
Q 018242          267 R  267 (359)
Q Consensus       267 ~  267 (359)
                      +
T Consensus       290 g  290 (402)
T 2aq5_A          290 S  290 (402)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.86  E-value=3.9e-07  Score=84.11  Aligned_cols=190  Identities=11%  Similarity=0.026  Sum_probs=122.6

Q ss_pred             CCCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccc--cccCCcceEEEEecCCCeE
Q 018242           34 IGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK--EHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        34 ~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~gi~~~~~~g~l  110 (359)
                      ....++++.++| ++++++..++.|..||..+++...                    .+  .........+++++++..+
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL--------------------TLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE--------------------EECTTTCCSCEEEEEECTTSSCE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE--------------------EEecCCCCCceEEEEECCCCCEE
Confidence            345689999998 678888889999999998764322                    11  2223446789999944556


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          111 YIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +++...+.|..+|+.+++.........  ....+..++++++|+ ++++...              ....+.|..||..+
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~g~~--------------~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVVAEKDRPH--EGTRPVHAVFVSEGK-ILTTGFS--------------RMSERQVALWDTKH  254 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSS--CSSSCCEEEECSTTE-EEEEEEC--------------TTCCEEEEEEETTB
T ss_pred             EEEecCCcEEEEeCCCCceeeeeccCC--CCCcceEEEEcCCCc-EEEEecc--------------CCCCceEEEEcCcc
Confidence            666655568899998877543321111  122367899999998 5554200              02356788999876


Q ss_pred             CcE--EEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEE
Q 018242          191 KQV--TVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       191 ~~~--~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv  261 (359)
                      +..  ... .........++++++++.++++...++.|..|++..... ....+..  ......++++.++|.+.+
T Consensus       255 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-~~~~l~~~~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          255 LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-FLHYLSMFSSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-CEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred             ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-ceEeecccccCCcccceEEecccccce
Confidence            432  122 233345678999999999888888889999999875431 0222222  224456788888775443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.86  E-value=4.8e-06  Score=87.99  Aligned_cols=156  Identities=12%  Similarity=0.061  Sum_probs=104.2

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++++|+++.++..++.|..||..+++...                    .+.........+++++++..+..+.
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~--------------------~~~~h~~~v~~~~~s~~~~~l~s~~  676 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL--------------------DIKAHEDEVLCCAFSSDDSYIATCS  676 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE--------------------EeccCCCCEEEEEEecCCCEEEEEe
Confidence            44588999999988888899999999998764321                    2223334567899999444455555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCE-EEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI-IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+.|..+|..+++.......    ....+..+.+.++++. +.++                 ++..+.|..||..+++.
T Consensus       677 ~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s-----------------g~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          677 ADKKVKIWDSATGKLVHTYDE----HSEQVNCCHFTNKSNHLLLAT-----------------GSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECSSSSCCEEEE-----------------EETTSCEEEEETTSSSE
T ss_pred             CCCeEEEEECCCCceEEEEcC----CCCcEEEEEEecCCCceEEEE-----------------EeCCCeEEEEECCCcch
Confidence            555688999988765432221    1235667888885332 3333                 12356788899887765


Q ss_pred             EEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          194 TVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       194 ~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ... .........++++|+++. +++.+.++.|..|++..
T Consensus       736 ~~~~~~h~~~v~~~~~sp~~~~-l~s~s~dg~v~vwd~~~  774 (1249)
T 3sfz_A          736 RNTMFGHTNSVNHCRFSPDDEL-LASCSADGTLRLWDVRS  774 (1249)
T ss_dssp             EEEECCCSSCEEEEEECSSTTE-EEEEESSSEEEEEEGGG
T ss_pred             hheecCCCCCEEEEEEecCCCE-EEEEECCCeEEEEeCCC
Confidence            543 333445678899999984 55556778999999754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.86  E-value=8.4e-07  Score=82.81  Aligned_cols=205  Identities=9%  Similarity=0.046  Sum_probs=122.2

Q ss_pred             CCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ..+.++++.++ +.+++++..++.|..|+..+..-.        +. .... ......+........++++++.+..+++
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~--------~~-~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSK--------PE-PSGE-CQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSS--------CC-TTCC-CCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccc--------cC-cccc-CCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            47889999997 677778888899999998652000        00 0000 0000122223345678999994442444


Q ss_pred             -EeCCCcEEEEeCCCCeE--EEE--eecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          113 -ADAYFGLLKVGPEGGLA--TAV--ATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       113 -~~~~~~i~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                       +...+.|..++..++..  ..+  ...... ....++.+++++ +++ ++++.                 ...+.|..|
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~-~l~s~-----------------~~dg~i~i~  259 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHES-LFGSV-----------------ADDQKLMIW  259 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTT-EEEEE-----------------ETTSEEEEE
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCC-EEEEE-----------------eCCCeEEEE
Confidence             44444588889876321  000  000111 123578899999 555 66662                 235678899


Q ss_pred             eCCCC----cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242          187 DPATK----QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV  261 (359)
Q Consensus       187 d~~~~----~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv  261 (359)
                      |..++    ....+......++.++++|+++.++++...++.|..|++..... ....+....+....+++.++|. +++
T Consensus       260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEeecCCCCEEEEEECCCCCCEEE
Confidence            98754    22233344456789999999987888888899999999865321 1222322233356689999884 666


Q ss_pred             EEecCCC
Q 018242          262 GIHSRRK  268 (359)
Q Consensus       262 ~~~~~~~  268 (359)
                      +....+.
T Consensus       339 s~~~d~~  345 (430)
T 2xyi_A          339 SSGTDRR  345 (430)
T ss_dssp             EEETTSC
T ss_pred             EEeCCCc
Confidence            5554443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.85  E-value=4.7e-06  Score=76.11  Aligned_cols=251  Identities=12%  Similarity=0.062  Sum_probs=135.4

Q ss_pred             cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEE
Q 018242           43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKV  122 (359)
Q Consensus        43 ~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~  122 (359)
                      .+|+ +|+++.++.|+.+|+.+++...-....                 ......|   .+.  ++.+|++...+.|+.+
T Consensus       102 ~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~-----------------~~~~~~p---~~~--~~~v~v~~~~g~l~~~  158 (376)
T 3q7m_A          102 SGGH-VYIGSEKAQVYALNTSDGTVAWQTKVA-----------------GEALSRP---VVS--DGLVLIHTSNGQLQAL  158 (376)
T ss_dssp             ETTE-EEEEETTSEEEEEETTTCCEEEEEECS-----------------SCCCSCC---EEE--TTEEEEECTTSEEEEE
T ss_pred             eCCE-EEEEcCCCEEEEEECCCCCEEEEEeCC-----------------CceEcCC---EEE--CCEEEEEcCCCeEEEE
Confidence            3455 899998899999999887644321110                 0011112   222  7899998766679999


Q ss_pred             eCCCCeEEEEeecCCCc-cccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC
Q 018242          123 GPEGGLATAVATQSEGI-PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS  201 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~  201 (359)
                      |.++|+........... ........+++ ++. +|++.                  ..+.|+.+|+++++.........
T Consensus       159 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~-v~~g~------------------~~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          159 NEADGAVKWTVNLDMPSLSLRGESAPTTA-FGA-AVVGG------------------DNGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             ETTTCCEEEEEECCC-----CCCCCCEEE-TTE-EEECC------------------TTTEEEEEETTTCCEEEEEECCC
T ss_pred             ECCCCcEEEEEeCCCCceeecCCCCcEEE-CCE-EEEEc------------------CCCEEEEEECCCCcEEEEEeccc
Confidence            99888764332211100 00011222333 566 88872                  24679999998887765432110


Q ss_pred             ------------CCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecCCC
Q 018242          202 ------------FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       202 ------------~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                                  ......+  .+..+|+.. .++.++.++....+.    .+.. .+. +..+..+ ++++|+++..+. 
T Consensus       219 ~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~----~w~~~~~~-~~~~~~~-~~~l~~~~~~g~-  288 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQI----MWKRELGS-VNDFIVD-GNRIYLVDQNDR-  288 (376)
T ss_dssp             -----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCE----EEEECCCC-EEEEEEE-TTEEEEEETTCC-
T ss_pred             CCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcE----EeeccCCC-CCCceEE-CCEEEEEcCCCe-
Confidence                        0011122  234467764 567899999754321    1222 222 3345554 578999886544 


Q ss_pred             ccccccccCC-ccceeeecCC-ccceeee------eecccccCcceEEEEECC-CCCEEEEEEccCCceeeceEEEEEeC
Q 018242          269 GISKLVLSFP-WIGNVLIKLP-IDIVKIH------SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKD  339 (359)
Q Consensus       269 ~~~~~~~~~~-~~g~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~  339 (359)
                           +..++ .+|+.+.+.+ .+.....      ...+-.... +.++++|+ +|+.+..+....+..   .......+
T Consensus       289 -----l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~-g~l~~~d~~tG~~~~~~~~~~~~~---~~~~~~~~  359 (376)
T 3q7m_A          289 -----VMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSE-GYLHWINVEDGRFVAQQKVDSSGF---QTEPVAAD  359 (376)
T ss_dssp             -----EEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEECCTTCB---CSCCEEET
T ss_pred             -----EEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCC-CeEEEEECCCCcEEEEEecCCCcc---eeCCEEEC
Confidence                 55554 4777765543 1111111      111112223 56788884 466666654322211   11223458


Q ss_pred             CEEEEecCCCCeEEEEc
Q 018242          340 GNLWIGSVNMPYAGLYN  356 (359)
Q Consensus       340 g~l~ig~~~~~~l~~~~  356 (359)
                      ++||+++. +..|..++
T Consensus       360 ~~l~v~~~-~G~l~~~~  375 (376)
T 3q7m_A          360 GKLLIQAK-DGTVYSIT  375 (376)
T ss_dssp             TEEEEEBT-TSCEEEEE
T ss_pred             CEEEEEeC-CCEEEEEe
Confidence            99999997 56677765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.84  E-value=2.9e-06  Score=77.18  Aligned_cols=201  Identities=11%  Similarity=0.106  Sum_probs=126.8

Q ss_pred             CCCCCceEEEccCCCeeEEecCC---------------CEEEEEEcCCc--c-eEEEeecCCCCCCCCCCcccccccccc
Q 018242           32 GAIGPESLAFDALGEGPYTGVSD---------------GRIIKWHQDQR--R-WLHFARTSPNRDGCEGAYEYDHAAKEH   93 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~~---------------~~i~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (359)
                      .+.+..++.+|+.|++|++++..               .+|..+|+.++  + .+++..+.               ....
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~---------------~~~~  149 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPT---------------RLVE  149 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCG---------------GGCC
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCH---------------Hhcc
Confidence            57888899999999955566541               27899999987  5 33443211               1111


Q ss_pred             cCCcceEEEEe-c------CCCeEEEEeCC-CcEEEEeCCCCeEEEEeec-C-C---------Cccc---cccceEEEeC
Q 018242           94 ICGRPLGLCFN-K------TNGDLYIADAY-FGLLKVGPEGGLATAVATQ-S-E---------GIPF---RFCNSLDIDQ  151 (359)
Q Consensus        94 ~~~~p~gi~~~-~------~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~-~-~---------~~~~---~~~~~l~~d~  151 (359)
                      .......+++| .      +++.+||++.. .+|+++|..+++..++... . +         +..+   ..+.+|+.+|
T Consensus       150 ~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp  229 (381)
T 3q6k_A          150 KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD  229 (381)
T ss_dssp             CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred             cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence            11234578888 2      15779999874 4799999998876554421 0 1         1111   3677899998


Q ss_pred             C----CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC-------CCcEEEEeCCCCCCc--eEEEc-cCCCEEEE
Q 018242          152 S----TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA-------TKQVTVLLGNLSFPN--GVALS-EDGNYILL  217 (359)
Q Consensus       152 ~----g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-------~~~~~~~~~~~~~p~--gia~~-~d~~~l~v  217 (359)
                      +    ++.||+.-..+.                 .+|++..+       ...++.+-.......  +++++ .+| .||+
T Consensus       230 ~~~~~~~~LYf~plss~-----------------~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G-~ly~  291 (381)
T 3q6k_A          230 RDSEGNRPAYYLAGSAI-----------------KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTK-VIFF  291 (381)
T ss_dssp             CCTTSCCEEEEEESSCS-----------------EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTC-EEEE
T ss_pred             CcCCCCeEEEEEECCCC-----------------cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCC-eEEE
Confidence            8    788999854321                 45555321       123333322221223  56776 445 5999


Q ss_pred             EecCCCEEEEEEcCC-CC-CcceeEeec-C-CCCCCceEECCCCCEEEEEec
Q 018242          218 AETTSCRILRYWLKT-SK-AGTIEIVAQ-L-PGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       218 ~~~~~~~i~~~~~~~-~~-~~~~~~~~~-~-~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      ++...+.|.+|+.+. +- ....+.+.. . --.|+++.+|.+|.||+.+..
T Consensus       292 ~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          292 AEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             EESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             EeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            999999999999765 31 123444443 2 236999999999999998865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.84  E-value=4.5e-06  Score=75.09  Aligned_cols=166  Identities=8%  Similarity=0.015  Sum_probs=104.6

Q ss_pred             EeeCCCCCCceEEEccC----CCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           28 YQIEGAIGPESLAFDAL----GEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~~----G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      +..+--....+++++|+    ...++++..++.|..||..+++. ..+...                ...........++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~   76 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------VDADADENFYTCA   76 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE----------------ECSCTTCCEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec----------------cccCCCCcEEEEE
Confidence            33333345668999973    34467777778999999886532 222200                0011223467888


Q ss_pred             EecCC---Ce-EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeec
Q 018242          103 FNKTN---GD-LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       103 ~~~~~---g~-l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ++++.   +. |+++...+.|..++..+++.......    ....+..+.++| +++ +.++-                 
T Consensus        77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~-~l~s~-----------------  134 (366)
T 3k26_A           77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG----HGNAINELKFHPRDPN-LLLSV-----------------  134 (366)
T ss_dssp             EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES----CCSCEEEEEECSSCTT-EEEEE-----------------
T ss_pred             eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC----CCCcEEEEEECCCCCC-EEEEE-----------------
Confidence            98842   34 44455555688999887765432221    123577899999 888 44441                 


Q ss_pred             CCCceEEEEeCCCCcEEEEe----CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          178 DKTGRLMKYDPATKQVTVLL----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~----~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ...+.|..||..+++.....    ........++++|+++.++ +...++.|..|++..
T Consensus       135 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          135 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM-SCGMDHSLKLWRINS  192 (366)
T ss_dssp             ETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE-EEETTSCEEEEESCS
T ss_pred             eCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE-EecCCCCEEEEECCC
Confidence            23567999998877655443    2344567899999998554 445678999999764

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.84  E-value=1.4e-06  Score=79.55  Aligned_cols=200  Identities=13%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             EEEccCCCeeEEecC-CC--EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecCCCeEEEEe
Q 018242           39 LAFDALGEGPYTGVS-DG--RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        39 i~~~~~G~~l~~~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~g~l~v~~  114 (359)
                      .+++|||+.++.... ++  .|+.+|..+++.+.+.                     ..... ..+.++++++..|+++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt---------------------~~~~~~~~~~~~spdg~~l~~~~   99 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT---------------------EGRGDNTFGGFLSPDDDALFYVK   99 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC---------------------CSSCBCSSSCEECTTSSEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee---------------------eCCCCCccceEEcCCCCEEEEEe
Confidence            679999985555444 44  5999999887544321                     11111 22567899566677776


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCC--Ccccc-ccce--eeeeecCCCceEEEEeCC
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS--SQFQR-RNHI--SVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~--~~~~~-~~~~--~~~~~~~~~g~v~~~d~~  189 (359)
                      ....|++++..+++.+.+......  .........+++|+ +.++...  ..+.. ..+.  ...........|+.+|.+
T Consensus       100 ~~~~l~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A          100 DGRNLMRVDLATLEENVVYQVPAE--WVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             TTTEEEEEETTTCCEEEEEECCTT--EEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             CCCeEEEEECCCCcceeeeechhh--cccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            555799999999886655432111  11111234589998 5443110  00000 0000  000011234579999999


Q ss_pred             CCcEEEEeCCCCCCceEEEcc-CCCEEEEEecC-----CCEEEEEEcCCCCCcceeEeecCC-C-CCCceEECCCCC-EE
Q 018242          190 TKQVTVLLGNLSFPNGVALSE-DGNYILLAETT-----SCRILRYWLKTSKAGTIEIVAQLP-G-FPDNIKRSPRGG-FW  260 (359)
Q Consensus       190 ~~~~~~~~~~~~~p~gia~~~-d~~~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~-~-~p~~i~~d~~G~-lw  260 (359)
                      +++.+.+.........++++| |++.+++....     ...|+.++.++...   +.+.... + .....+++++|+ |+
T Consensus       177 ~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~  253 (388)
T 3pe7_A          177 TGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM---RKVKTHAEGESCTHEFWVPDGSALV  253 (388)
T ss_dssp             TCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC---EESCCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce---EEeeeCCCCcccccceECCCCCEEE
Confidence            888776654444567889999 99876555443     34899998764322   2222211 1 122467899996 64


Q ss_pred             EEEec
Q 018242          261 VGIHS  265 (359)
Q Consensus       261 v~~~~  265 (359)
                      .....
T Consensus       254 ~~~~~  258 (388)
T 3pe7_A          254 YVSYL  258 (388)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            44443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.84  E-value=1.2e-06  Score=79.49  Aligned_cols=185  Identities=14%  Similarity=0.113  Sum_probs=117.0

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCe-EEEEe
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGD-LYIAD  114 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~-l~v~~  114 (359)
                      .++.+.+++..++++..++.|..||..+++...                    .+.........+.+.+. +++ ++.+.
T Consensus       158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~--------------------~~~~h~~~v~~~~~~~~~~g~~l~sgs  217 (354)
T 2pbi_B          158 SACSFTNSDMQILTASGDGTCALWDVESGQLLQ--------------------SFHGHGADVLCLDLAPSETGNTFVSGG  217 (354)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCCEEE--------------------EEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE--------------------EEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence            478899999878899999999999998764322                    11222233456667653 344 55555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..+|..+++.......    ....++.++++|+|+ ++++-                 +..+.|..||..++...
T Consensus       218 ~Dg~v~~wd~~~~~~~~~~~~----h~~~v~~v~~~p~~~-~l~s~-----------------s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          218 CDKKAMVWDMRSGQCVQAFET----HESDVNSVRYYPSGD-AFASG-----------------SDDATCRLYDLRADREV  275 (354)
T ss_dssp             TTSCEEEEETTTCCEEEEECC----CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCcEEEEecC----CCCCeEEEEEeCCCC-EEEEE-----------------eCCCeEEEEECCCCcEE
Confidence            555689999988765332221    123577899999999 55541                 23567888998765443


Q ss_pred             EEeCC---CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242          195 VLLGN---LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       195 ~~~~~---~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      .....   ......++++++++. +++...++.|..|++....  ....+....+....++++++|++.++....
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~-l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg~~l~sgs~D  347 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRL-LFAGYNDYTINVWDVLKGS--RVSILFGHENRVSTLRVSPDGTAFCSGSWD  347 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEEcCCCcccceeEEEEeCCCCE-EEEEECCCcEEEEECCCCc--eEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence            33221   123468899999985 4555577899999975432  122222222334568999999866655443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.83  E-value=1.9e-07  Score=85.32  Aligned_cols=213  Identities=10%  Similarity=-0.093  Sum_probs=122.0

Q ss_pred             CCEEEEeeCC------CCCCceEEEccCCCeeEEecC--CCEEEE--EEcCCcceEEEeecCC-------CCC-CCCCCc
Q 018242           23 QGVVQYQIEG------AIGPESLAFDALGEGPYTGVS--DGRIIK--WHQDQRRWLHFARTSP-------NRD-GCEGAY   84 (359)
Q Consensus        23 ~~~~~~~~~~------~~~p~~i~~~~~G~~l~~~~~--~~~i~~--~d~~~~~~~~~~~~~~-------~~~-~~~~~~   84 (359)
                      +...++.+++      ...|++++++|||+.+|++..  ...+..  +|+.+  ...+.....       .+. ....+.
T Consensus       107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~d  184 (368)
T 1mda_H          107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCP  184 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCT
T ss_pred             CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCC
Confidence            3344777662      257999999999998999875  356777  77755  333321100       000 000000


Q ss_pred             cc--------------ccc----cccccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeec-CCC----ccc
Q 018242           85 EY--------------DHA----AKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ-SEG----IPF  141 (359)
Q Consensus        85 ~~--------------~~~----~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~-~~~----~~~  141 (359)
                      +.              .+.    ........|.  + .++++.+|+.+. +.+..+|..++..+.+... ...    ...
T Consensus       185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN  260 (368)
T ss_dssp             TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred             CCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence            00              000    0001112343  3 554677777766 7799999876543332210 000    011


Q ss_pred             cccce---EEEeCCCCEEEEEeC---CCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEE
Q 018242          142 RFCNS---LDIDQSTGIIYFTDS---SSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYI  215 (359)
Q Consensus       142 ~~~~~---l~~d~~g~~l~v~d~---~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l  215 (359)
                      ..|.+   ++++++|+++|++..   +.-            ....+.+..+|..+++..........|.++++++|++.+
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~------------~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l  328 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSC------------LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD  328 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCT------------TSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcc------------cccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEE
Confidence            12333   889999999999832   100            000124669999887665433333469999999999988


Q ss_pred             EEEec-CCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCC
Q 018242          216 LLAET-TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  256 (359)
Q Consensus       216 ~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  256 (359)
                      |+++. .++.|.++|+...+   .......+..|+++++.++
T Consensus       329 ~va~~~~~~~VsVID~~t~k---vv~~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAASDQ---DQSSVELDKGPESLSVQNE  367 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCE---EEEECCCCSCCCEEECCCC
T ss_pred             EEEccCCCCeEEEEECCCCc---EEEEEECCCCCCEEEeecC
Confidence            99988 68999999975531   1112234567999988653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.83  E-value=4.7e-07  Score=81.40  Aligned_cols=193  Identities=8%  Similarity=0.029  Sum_probs=114.6

Q ss_pred             CCCceEEEccC---CCeeEEecCCCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccccccCCcceEEE------
Q 018242           34 IGPESLAFDAL---GEGPYTGVSDGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC------  102 (359)
Q Consensus        34 ~~p~~i~~~~~---G~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~------  102 (359)
                      ....++++.++   |++++++..++.|..||..+.+  ...                     +.........+.      
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~  124 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS---------------------VKGHKEIINAIDGIGGLG  124 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE---------------------ECCCSSCEEEEEEESGGG
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE---------------------EEecccceEEEeeccccc
Confidence            34568889998   6878889999999999988763  111                     122223344553      


Q ss_pred             EecCCCeEEEEeCCCcEEEEeCCCCe--EEEEeecCCCccccccceEE----EeCCCCEEEEEeCCCccccccceeeeee
Q 018242          103 FNKTNGDLYIADAYFGLLKVGPEGGL--ATAVATQSEGIPFRFCNSLD----IDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       103 ~~~~~g~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~----~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      +++++..++.+...+.|..+|..+++  ...+.. ..+.....+..++    ++++++.++.+                 
T Consensus       125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~-----------------  186 (357)
T 3i2n_A          125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCAG-----------------  186 (357)
T ss_dssp             CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEEE-----------------
T ss_pred             cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEEE-----------------
Confidence            45634455555555568889988764  222211 1111122445565    67889844444                 


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCCCCCCceEEEcc---CCCEEEEEecCCCEEEEEEcCCCCCcc-eeE--eecCCCCCCc
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE---DGNYILLAETTSCRILRYWLKTSKAGT-IEI--VAQLPGFPDN  250 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~---d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~--~~~~~~~p~~  250 (359)
                       ...+.|..||..+++.............++++|   +++.++. ...++.|..|++....... ...  +.........
T Consensus       187 -~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  264 (357)
T 3i2n_A          187 -YDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA-TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQ  264 (357)
T ss_dssp             -ETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE-EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEE
T ss_pred             -ccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE-ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEE
Confidence             234689999998877655444445578899999   8875554 5677899999986432211 111  1122233456


Q ss_pred             eEECCCCC-EEEEEecCC
Q 018242          251 IKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       251 i~~d~~G~-lwv~~~~~~  267 (359)
                      +++.++|. +.++....+
T Consensus       265 ~~~~~~~~~~l~~~~~dg  282 (357)
T 3i2n_A          265 VRHLPQNRELFLTAGGAG  282 (357)
T ss_dssp             EEEETTEEEEEEEEETTS
T ss_pred             EEECCCCCcEEEEEeCCC
Confidence            88889887 555444433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.83  E-value=9.4e-07  Score=79.63  Aligned_cols=191  Identities=12%  Similarity=-0.068  Sum_probs=116.3

Q ss_pred             CCceEEEccC----CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe-
Q 018242           35 GPESLAFDAL----GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD-  109 (359)
Q Consensus        35 ~p~~i~~~~~----G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~-  109 (359)
                      ...++++.++    |++++++..++.|..||..+++...                    .+.........+++++.+++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--------------------~~~~~~~~i~~~~~~~~~~~~  130 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK--------------------HYVGHGNAINELKFHPRDPNL  130 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE--------------------EEESCCSCEEEEEECSSCTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee--------------------eecCCCCcEEEEEECCCCCCE
Confidence            3568889988    6678889999999999988764322                    12223345678999984444 


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          110 LYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      ++.+...+.|..+|..+++.......... ....+..++++++|++++.+                  ...+.|..||..
T Consensus       131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~i~d~~  191 (366)
T 3k26_A          131 LLSVSKDHALRLWNIQTDTLVAIFGGVEG-HRDEVLSADYDLLGEKIMSC------------------GMDHSLKLWRIN  191 (366)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECSTTS-CSSCEEEEEECTTSSEEEEE------------------ETTSCEEEEESC
T ss_pred             EEEEeCCCeEEEEEeecCeEEEEeccccc-ccCceeEEEECCCCCEEEEe------------------cCCCCEEEEECC
Confidence            55555555699999988765443211111 22467889999999944444                  224568888876


Q ss_pred             CCcEEEE-----------------------------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC-----
Q 018242          190 TKQVTVL-----------------------------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-----  235 (359)
Q Consensus       190 ~~~~~~~-----------------------------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~-----  235 (359)
                      +++....                             .........++++  ++ ++++...++.|..|++.....     
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~  268 (366)
T 3k26_A          192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKI  268 (366)
T ss_dssp             SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred             CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCcccccccc
Confidence            5432110                             0022334677776  45 566667789999999864321     


Q ss_pred             ----cc---eeEeecCCCCCCceEECCC--CCEEEEEecCC
Q 018242          236 ----GT---IEIVAQLPGFPDNIKRSPR--GGFWVGIHSRR  267 (359)
Q Consensus       236 ----~~---~~~~~~~~~~p~~i~~d~~--G~lwv~~~~~~  267 (359)
                          ..   ...+.........++++++  |++.++....+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg  309 (366)
T 3k26_A          269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG  309 (366)
T ss_dssp             CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred             ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence                00   1111112223456777777  88766555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.82  E-value=9.9e-07  Score=88.85  Aligned_cols=207  Identities=9%  Similarity=-0.065  Sum_probs=128.8

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++|+|+.+.++..++.|..||..+++...                    .+.........+++++++..+.++
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--------------------~~~~~~~~v~~~~~s~~~~~l~~~  115 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--------------------DFEAHPDYIRSIAVHPTKPYVLSG  115 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--------------------EEECCSSCEEEEEECSSSSEEEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--------------------EEecCCCCEEEEEEeCCCCEEEEE
Confidence            345689999999988888899999999988764322                    122233446789999954556666


Q ss_pred             eCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          114 DAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       114 ~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ...+.|..++.+++ ........    ....+..++++| +++.+.++                  ...+.|..||..++
T Consensus       116 ~~dg~i~vw~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~------------------~~dg~v~vwd~~~~  173 (814)
T 3mkq_A          116 SDDLTVKLWNWENNWALEQTFEG----HEHFVMCVAFNPKDPSTFASG------------------CLDRTVKVWSLGQS  173 (814)
T ss_dssp             ETTSEEEEEEGGGTSEEEEEEEC----CSSCEEEEEEETTEEEEEEEE------------------ETTSEEEEEETTCS
T ss_pred             cCCCEEEEEECCCCceEEEEEcC----CCCcEEEEEEEcCCCCEEEEE------------------eCCCeEEEEECCCC
Confidence            65556888898766 33222221    113467889999 77734333                  23467888987654


Q ss_pred             cEEE-EeCC-CCCCceEEEcc--CCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          192 QVTV-LLGN-LSFPNGVALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       192 ~~~~-~~~~-~~~p~gia~~~--d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .... +... ......++++|  +++ .+++...++.|..|++....  ....+....+....+++.++|.+.++....+
T Consensus       174 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  250 (814)
T 3mkq_A          174 TPNFTLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISGSEDG  250 (814)
T ss_dssp             SCSEEEECCCTTCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             cceeEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            4332 2222 24567889988  887 45555677899999975432  1222222223345688899998666555444


Q ss_pred             CccccccccCCc-cceeeecCCcc
Q 018242          268 KGISKLVLSFPW-IGNVLIKLPID  290 (359)
Q Consensus       268 ~~~~~~~~~~~~-~g~~~~~~~~~  290 (359)
                      .     +..++. .++....+..+
T Consensus       251 ~-----v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          251 T-----LKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             C-----EEEEETTTCSEEEEECCS
T ss_pred             e-----EEEEECCCCcEEEEeecC
Confidence            3     444443 45555554443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.81  E-value=1.9e-06  Score=80.77  Aligned_cols=163  Identities=13%  Similarity=0.118  Sum_probs=96.4

Q ss_pred             cceEEEEecCCCeEEEEe-CCCcEEEEeCC--CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242           97 RPLGLCFNKTNGDLYIAD-AYFGLLKVGPE--GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~-~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      ....+++++++..|+++. ..+.|..++..  +++.........  ....+..++++|+|++|++++             
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-------------  168 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--FSKRPNAISIAEDDTTVIIAD-------------  168 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEE-------------
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc--CCCCceEEEEcCCCCEEEEEe-------------
Confidence            357889999444444443 33457778876  554332221100  113567899999999566652             


Q ss_pred             eeecCCCceEEEEeCCCCcEE-----EEeCCCCCCceEEEccC---CCEEEEEecCCCEEEEEEcCCCCCcceeEee-cC
Q 018242          174 ILSGDKTGRLMKYDPATKQVT-----VLLGNLSFPNGVALSED---GNYILLAETTSCRILRYWLKTSKAGTIEIVA-QL  244 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~-----~~~~~~~~p~gia~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~  244 (359)
                           ..+.|+.++..++...     .+.........++++|+   ++ ++++...++.|..|++.....  ...+. ..
T Consensus       169 -----~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~--~~~~~~~h  240 (450)
T 2vdu_B          169 -----KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFI--VDKWLFGH  240 (450)
T ss_dssp             -----TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTC--EEEECCCC
T ss_pred             -----CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCce--eeeeecCC
Confidence                 2467888887654432     12223345678999999   76 455556778999999865422  22222 22


Q ss_pred             CCCCCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCC
Q 018242          245 PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLP  288 (359)
Q Consensus       245 ~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~  288 (359)
                      .+....+++. +|++.++....+.     +.+++ ..++.+..+.
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~d~~-----v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGGDDK-----IFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEESSSE-----EEEEETTTCCEEEEEE
T ss_pred             CCceEEEEEC-CCCEEEEEeCCCe-----EEEEECCCCcEeeeec
Confidence            2345678998 8887765555443     55554 3555555443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.81  E-value=1.3e-05  Score=79.56  Aligned_cols=190  Identities=13%  Similarity=0.113  Sum_probs=122.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.+++++++|+++.++..++.|..||..++....                    .+.........+++++++..+..+..
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--------------------~~~~h~~~v~~~~~s~~~~~l~s~s~  492 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--------------------RFVGHTKDVLSVAFSLDNRQIVSASR  492 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--------------------EEeCCCCCEEEEEEeCCCCEEEEEeC
Confidence            4578999999988889999999999998763221                    12223344678999995555665665


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCE-EEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI-IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      .+.|..+|..+.....+..... .....+..+++++++.. +.++                 ++..+.|..||..+++..
T Consensus       493 D~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s-----------------~s~d~~v~vwd~~~~~~~  554 (694)
T 3dm0_A          493 DRTIKLWNTLGECKYTISEGGE-GHRDWVSCVRFSPNTLQPTIVS-----------------ASWDKTVKVWNLSNCKLR  554 (694)
T ss_dssp             TSCEEEECTTSCEEEEECSSTT-SCSSCEEEEEECSCSSSCEEEE-----------------EETTSCEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCcceeeccCCC-CCCCcEEEEEEeCCCCcceEEE-----------------EeCCCeEEEEECCCCcEE
Confidence            5568888887654333322111 12235678899988621 3444                 123567888998876655


Q ss_pred             EEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          195 VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       195 ~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ... .+......++++|+++ ++++...++.|..||+...+.  ... .........+++++++.+.++....+
T Consensus       555 ~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~--~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~  624 (694)
T 3dm0_A          555 STLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKK--LYS-LEANSVIHALCFSPNRYWLCAATEHG  624 (694)
T ss_dssp             EEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEE--EEC-CBCSSCEEEEEECSSSSEEEEEETTE
T ss_pred             EEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCce--EEE-ecCCCcEEEEEEcCCCcEEEEEcCCC
Confidence            433 3344567899999998 566666788999999864311  111 11223346688999998777665443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.80  E-value=2.2e-07  Score=87.42  Aligned_cols=166  Identities=14%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             cCCcceEEEEecCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCC----ccccccceEEEeCC---CCEEEEEeCCCcc
Q 018242           94 ICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEG----IPFRFCNSLDIDQS---TGIIYFTDSSSQF  165 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~d~~---g~~l~v~d~~~~~  165 (359)
                      ....|.+|++++ +|+|||++... .|++++..+++.+.+......    .....+.+|+++|+   +++||++.+....
T Consensus        25 ~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           25 NLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            345799999999 89999998775 499998876666554331110    11345669999994   4449999542000


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCC--cE---EEEe-----CCCCCCceEEEccCCCEEEEEecC--------------
Q 018242          166 QRRNHISVILSGDKTGRLMKYDPATK--QV---TVLL-----GNLSFPNGVALSEDGNYILLAETT--------------  221 (359)
Q Consensus       166 ~~~~~~~~~~~~~~~g~v~~~d~~~~--~~---~~~~-----~~~~~p~gia~~~d~~~l~v~~~~--------------  221 (359)
                      .....     .......|++++.+.+  .+   +.+.     .....+.+|+|++||+ ||++.-.              
T Consensus       104 ~~~~~-----~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~~~~~~~~  177 (454)
T 1cru_A          104 KSTDK-----ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLAYLFLPNQ  177 (454)
T ss_dssp             TC--C-----CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGGGTTSCCC
T ss_pred             CCCcc-----ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCccccccccc
Confidence            00000     0000235777664321  21   2222     1234578999999997 8998432              


Q ss_pred             ------------------CCEEEEEEcCCCCCc--------ceeEeecCCCCCCceEECCCCCEEEEEecC
Q 018242          222 ------------------SCRILRYWLKTSKAG--------TIEIVAQLPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       222 ------------------~~~i~~~~~~~~~~~--------~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                                        .+.|+|++.++.-..        ..+++..-.--|.++++|++|+||++..+.
T Consensus       178 ~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~L~~~d~g~  248 (454)
T 1cru_A          178 AQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGKLLQSEQGP  248 (454)
T ss_dssp             TTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSCEEEEEECS
T ss_pred             cccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCCEEEEecCC
Confidence                              367999987542100        123343311237889999999999999763

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.6e-05  Score=71.27  Aligned_cols=191  Identities=9%  Similarity=-0.058  Sum_probs=106.9

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccc-cc-cCCcceEEEEecCCCeEE-
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK-EH-ICGRPLGLCFNKTNGDLY-  111 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~p~gi~~~~~~g~l~-  111 (359)
                      .-.+++++++  ++.++..++.|..||..++......                  .+ .. .......++++| +++++ 
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~------------------~~~~~~h~~~v~~v~~sp-~~~~la   74 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLID------------------VLDETAHKKAIRSVAWRP-HTSLLA   74 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEE------------------EECTTCCCSCEEEEEECT-TSSEEE
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEE------------------EEecCCccCCEEEEEECC-CCCEEE
Confidence            3457778776  5888899999999998765332221                  11 11 223467899999 55544 


Q ss_pred             EEeCCCcEEEEeCCCCe-----EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          112 IADAYFGLLKVGPEGGL-----ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      .+...+.|..++.+...     .+.+.. ..+ ....+..++++|+|+ ..++-                 +..+.|..|
T Consensus        75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~-h~~~V~~v~~sp~g~-~las~-----------------s~D~~v~iw  134 (330)
T 2hes_X           75 AGSFDSTVSIWAKEESADRTFEMDLLAI-IEG-HENEVKGVAWSNDGY-YLATC-----------------SRDKSVWIW  134 (330)
T ss_dssp             EEETTSCEEEEEC-------CCCEEEEE-EC-----CEEEEEECTTSC-EEEEE-----------------ETTSCEEEE
T ss_pred             EEeCCCcEEEEEcccCcCccccceeEEE-EcC-CCCcEEEEEECCCCC-EEEEE-----------------eCCCEEEEE
Confidence            44544557778774321     111111 111 123577899999999 44441                 234578888


Q ss_pred             eCCC-C---cE-EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCC--CCE
Q 018242          187 DPAT-K---QV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR--GGF  259 (359)
Q Consensus       187 d~~~-~---~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~--G~l  259 (359)
                      |... +   +. ..+.........++++|+++ ++++...++.|..|+...........+....+....++++++  +.+
T Consensus       135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  213 (330)
T 2hes_X          135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR  213 (330)
T ss_dssp             ECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred             eccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence            8732 2   12 22333444567899999988 566667788999998653311111122212223345778776  554


Q ss_pred             EEEEecCC
Q 018242          260 WVGIHSRR  267 (359)
Q Consensus       260 wv~~~~~~  267 (359)
                      .++....+
T Consensus       214 l~s~s~D~  221 (330)
T 2hes_X          214 LCSGSDDS  221 (330)
T ss_dssp             EEEEETTS
T ss_pred             EEEEeCCC
Confidence            44443333

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.79  E-value=3.4e-07  Score=96.85  Aligned_cols=200  Identities=10%  Similarity=-0.022  Sum_probs=129.4

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...+++++++|+.+.++..+|.|..|+..+++...                    ...........+++++++..+..+.
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~--------------------~~~~h~~~v~~l~~s~dg~~l~s~~ 1022 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS--------------------SGVGHKKAVRHIQFTADGKTLISSS 1022 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE--------------------ECCCCSSCCCCEEECSSSSCEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee--------------------ecccCCCceEEEEECCCCCEEEEEc
Confidence            45688999999988899999999999988764322                    1122233456899999444455555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..++..+++......     ....+..+.+.+++. +..+                  +..+.|..||..+++..
T Consensus      1023 ~dg~i~vwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~-l~~~------------------~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A         1023 EDSVIQVWNWQTGDYVFLQA-----HQETVKDFRLLQDSR-LLSW------------------SFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp             SSSBEEEEETTTTEEECCBC-----CSSCEEEEEECSSSE-EEEE------------------ESSSEEEEEETTTTCCC
T ss_pred             CCCEEEEEECCCCceEEEec-----CCCcEEEEEEcCCCc-EEEE------------------ECCCcEEEEECCCCcee
Confidence            44568899998887543211     123566788999887 6555                  23567999998876544


Q ss_pred             E-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccc
Q 018242          195 V-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKL  273 (359)
Q Consensus       195 ~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~  273 (359)
                      . +.........++++||++. +++...++.|..|++.....  ...+....+....++++++|++.++....+.     
T Consensus      1079 ~~~~~~~~~v~~~~~s~d~~~-l~s~s~d~~v~iwd~~~~~~--~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~----- 1150 (1249)
T 3sfz_A         1079 RDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLLSP--LHELKGHNGCVRCSAFSLDGILLATGDDNGE----- 1150 (1249)
T ss_dssp             EEEECCSSCCCCEEECSSSSS-CEEECCSSCCCEECSSSSSC--SBCCCCCSSCEEEEEECSSSSEEEEEETTSC-----
T ss_pred             EEEcccCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCcce--eeeeccCCCcEEEEEECCCCCEEEEEeCCCE-----
Confidence            3 3334455688999999985 45556778899998764321  1111112223456899999987776655554     


Q ss_pred             cccCC-ccceeeec
Q 018242          274 VLSFP-WIGNVLIK  286 (359)
Q Consensus       274 ~~~~~-~~g~~~~~  286 (359)
                      +..++ ..++.+..
T Consensus      1151 i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A         1151 IRIWNVSDGQLLHS 1164 (1249)
T ss_dssp             CCEEESSSSCCCCC
T ss_pred             EEEEECCCCceEEE
Confidence            45554 34555444

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.79  E-value=1.2e-05  Score=75.25  Aligned_cols=205  Identities=13%  Similarity=0.077  Sum_probs=120.5

Q ss_pred             ccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEE
Q 018242           42 DALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLK  121 (359)
Q Consensus        42 ~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~  121 (359)
                      ..++++++++..++.|..||..+++...                    .+.........+++++ ++.++.+...+.|..
T Consensus       129 ~~~~~~l~sgs~dg~i~vwd~~~~~~~~--------------------~~~~h~~~V~~l~~~~-~~~l~s~s~dg~i~v  187 (464)
T 3v7d_B          129 QFEDNYVITGADDKMIRVYDSINKKFLL--------------------QLSGHDGGVWALKYAH-GGILVSGSTDRTVRV  187 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEE--------------------EECCCSSCEEEEEECS-TTEEEEEETTSCEEE
T ss_pred             EECCCEEEEEcCCCcEEEEECCCCcEEE--------------------EEeCCCcCEEEEEEcC-CCEEEEEeCCCCEEE
Confidence            3356668889999999999988764322                    2222334567888887 666666666667999


Q ss_pred             EeCCCCeEEEEeecCCCccccccceEEEe--CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE-----
Q 018242          122 VGPEGGLATAVATQSEGIPFRFCNSLDID--QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT-----  194 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d--~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-----  194 (359)
                      +|.++++.......    ....+..+.+.  ++++++..+                  +..+.|..+|..++...     
T Consensus       188 wd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~~l~s~------------------s~d~~i~vwd~~~~~~~~~~~~  245 (464)
T 3v7d_B          188 WDIKKGCCTHVFEG----HNSTVRCLDIVEYKNIKYIVTG------------------SRDNTLHVWKLPKESSVPDHGE  245 (464)
T ss_dssp             EETTTTEEEEEECC----CSSCEEEEEEEESSSCEEEEEE------------------ETTSCEEEEECCCCCCC-----
T ss_pred             EECCCCcEEEEECC----CCCccEEEEEecCCCCCEEEEE------------------cCCCcEEEeeCCCCcccccccc
Confidence            99998875433221    12245566666  566633333                  22456777776654311     


Q ss_pred             -------------------EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC
Q 018242          195 -------------------VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  255 (359)
Q Consensus       195 -------------------~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  255 (359)
                                         ....  ....-.+++++++. +++...++.|..||+...+  ....+.........+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~  320 (464)
T 3v7d_B          246 EHDYPLVFHTPEENPYFVGVLRG--HMASVRTVSGHGNI-VVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH  320 (464)
T ss_dssp             -CCSSEEESCGGGCTTEEEEECC--CSSCEEEEEEETTE-EEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET
T ss_pred             cCCcceEeeccCCCeEEEEEccC--ccceEEEEcCCCCE-EEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcC
Confidence                               1111  11223455677775 4555567899999975431  1122222223345688899


Q ss_pred             CCCEEEEEecCCCccccccccCCc-cceeeecCCccceeeeeecc
Q 018242          256 RGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       256 ~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~  299 (359)
                      +|+..++....+.     +..++. .++.+..+..+...+..+.+
T Consensus       321 ~~~~l~sg~~dg~-----i~vwd~~~~~~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          321 ERKRCISASMDTT-----IRIWDLENGELMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             TTTEEEEEETTSC-----EEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEeCCCc-----EEEEECCCCcEEEEEeCCCCcEEEEEE
Confidence            9987665555554     566653 67777666554444444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.79  E-value=1.1e-06  Score=87.44  Aligned_cols=207  Identities=7%  Similarity=-0.088  Sum_probs=113.3

Q ss_pred             CCceEEEccCCCeeEEecCC---------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           35 GPESLAFDALGEGPYTGVSD---------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ...+++++|||+.+..+..+         +.|+.||..+++.+.+.                  ........+..++++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~------------------~~~~~~~~~~~~~~SP  123 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD------------------PPEVSNAKLQYAGWGP  123 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC------------------CTTCCSCCCSBCCBCS
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEecc------------------CCccccccccccEECC
Confidence            37899999999966665442         78899999887543321                  0011111245677888


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCcc--------------ccccceEEEeCCCCEEEEEeCCCc----ccc
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIP--------------FRFCNSLDIDQSTGIIYFTDSSSQ----FQR  167 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~d~~g~~l~v~d~~~~----~~~  167 (359)
                      ++..|..+. .+.|+.++..+++...+........              +.....++++|||++|.++.....    |..
T Consensus       124 dG~~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~  202 (723)
T 1xfd_A          124 KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (723)
T ss_dssp             STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEe
Confidence            444555554 3579999998877655432111000              112367999999997766532100    000


Q ss_pred             c-------cceeee-----eecCCCceEEEEeCCCCcE-EEEeCC------CCCCceEEEccCCCEEEEEecC---CCEE
Q 018242          168 R-------NHISVI-----LSGDKTGRLMKYDPATKQV-TVLLGN------LSFPNGVALSEDGNYILLAETT---SCRI  225 (359)
Q Consensus       168 ~-------~~~~~~-----~~~~~~g~v~~~d~~~~~~-~~~~~~------~~~p~gia~~~d~~~l~v~~~~---~~~i  225 (359)
                      .       .....+     ........|+.+|..+++. ..+...      ......++++|||+.++.....   ...|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i  282 (723)
T 1xfd_A          203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL  282 (723)
T ss_dssp             CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred             eccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence            0       000000     0001123688999887764 333221      1123468999999866444322   2578


Q ss_pred             EEEEcCCCCCcceeEeec-CCCC----CCceEECCCCC-EEEE
Q 018242          226 LRYWLKTSKAGTIEIVAQ-LPGF----PDNIKRSPRGG-FWVG  262 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~-~~~~----p~~i~~d~~G~-lwv~  262 (359)
                      +.|++...+.  ...+.. ..+.    +..++++++|+ |+++
T Consensus       283 ~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          283 TLCDATTGVC--TKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EEEETTTCCE--EEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             EEEeCCCCcc--eEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            8888765432  122211 1121    24789999997 5554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.78  E-value=3.6e-06  Score=74.82  Aligned_cols=196  Identities=11%  Similarity=-0.008  Sum_probs=111.2

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCe
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGD  109 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~  109 (359)
                      ..-.+++++++|++++++..++.|..||..+..  ++...                  .+.........+++.+.  +..
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~d~~~   73 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD------------------SWRAHDSSIVAIDWASPEYGRI   73 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEE------------------EEECCSSCEEEEEECCGGGCSE
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecc------------------eeccCCCcEEEEEEcCCCCCCE
Confidence            456789999999988889999999999987642  11111                  12223344678889874  344


Q ss_pred             EEEEeCCCcEEEEeCCCCeE-------EEEeecCCCccccccceEEEeCC--CCEEEEEeCCCccccccceeeeeecCCC
Q 018242          110 LYIADAYFGLLKVGPEGGLA-------TAVATQSEGIPFRFCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      |+.+...+.|..++.++++.       +.+.. ... ....+..++++++  ++++..+                  ...
T Consensus        74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~l~~~------------------~~d  133 (351)
T 3f3f_A           74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCT-LND-SKGSLYSVKFAPAHLGLKLACL------------------GND  133 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCTTSSCSEEEEEE-ECC-CSSCEEEEEECCGGGCSEEEEE------------------ETT
T ss_pred             EEEEcCCCeEEEEecCCCcccccccCcceeee-ecc-cCCceeEEEEcCCCCCcEEEEe------------------cCC
Confidence            55555555588888876531       11111 111 1235678999999  8844444                  234


Q ss_pred             ceEEEEeCCCCcEEE-------Ee-------CCCCCCceEEEccC---CCEEEEEecCCCEEEEEEcCCCCCcceeEeec
Q 018242          181 GRLMKYDPATKQVTV-------LL-------GNLSFPNGVALSED---GNYILLAETTSCRILRYWLKTSKAGTIEIVAQ  243 (359)
Q Consensus       181 g~v~~~d~~~~~~~~-------~~-------~~~~~p~gia~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (359)
                      +.|..||..+++...       ..       ........++++|+   ++.++ +...++.+..++...........+..
T Consensus       134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (351)
T 3f3f_A          134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLA-VSALEQAIIYQRGKDGKLHVAAKLPG  212 (351)
T ss_dssp             CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEE-EEETTEEEEEEECTTSCEEEEEECCC
T ss_pred             CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEE-EecCCCcEEEEccCCCceeeeeecCC
Confidence            678888876543210       00       11233467888886   66444 44555666555433321111111111


Q ss_pred             CCCCCCceEECCCC----CEEEEEecCCC
Q 018242          244 LPGFPDNIKRSPRG----GFWVGIHSRRK  268 (359)
Q Consensus       244 ~~~~p~~i~~d~~G----~lwv~~~~~~~  268 (359)
                      .......+++.++|    ++.++....+.
T Consensus       213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          213 HKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             CCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence            22334568899987    56665554443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.3e-06  Score=87.69  Aligned_cols=195  Identities=10%  Similarity=0.078  Sum_probs=119.1

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-Ce-EEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GD-LYI  112 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~-l~v  112 (359)
                      .-.+++++++|+.++++..++.|..||..+.......                  .+.........++++++. ++ ++.
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~------------------~l~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID------------------TLTGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE------------------EECCCSSCEEEEEECCTTSCSEEEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce------------------eccCCcCceEEEEecCCCCCCEEEE
Confidence            4568889999998888889999999998754333221                  222233446788898741 44 445


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC--CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +...+.|..++..+++.........  ....+..++++|+  |+.++++                  +..+.|..||..+
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sg------------------s~dg~I~vwdl~~  132 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVA------------------SSDGKVSVVEFKE  132 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEE------------------ETTSEEEEEECCS
T ss_pred             EeCCCeEEEEECCCCcccccccccC--CCCCeEEEEECCCCCCCEEEEE------------------eCCCcEEEEEeec
Confidence            5545558888988876433222111  1235778999999  8834444                  2356788888765


Q ss_pred             Cc---EEEEeCCCCCCceEEEcc-------------CCCEEEEEecCCCEEEEEEcCCCCCc-ce-eEeecCCCCCCceE
Q 018242          191 KQ---VTVLLGNLSFPNGVALSE-------------DGNYILLAETTSCRILRYWLKTSKAG-TI-EIVAQLPGFPDNIK  252 (359)
Q Consensus       191 ~~---~~~~~~~~~~p~gia~~~-------------d~~~l~v~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~~~p~~i~  252 (359)
                      +.   .............++++|             +++ ++++...++.|..|++...... .. ..+....+....++
T Consensus       133 ~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             SSCCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             CCCcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence            52   222333344567888888             466 4555667789999998654221 11 11111223345688


Q ss_pred             ECCC---CCEEEEEecCCC
Q 018242          253 RSPR---GGFWVGIHSRRK  268 (359)
Q Consensus       253 ~d~~---G~lwv~~~~~~~  268 (359)
                      +.++   |++.++....+.
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSC
T ss_pred             eccCCCCCCEEEEEecCCE
Confidence            8998   776665555443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.76  E-value=2.2e-06  Score=78.44  Aligned_cols=190  Identities=13%  Similarity=0.066  Sum_probs=117.3

Q ss_pred             CCceEEEccC----C---CeeEEecCCCEEEEEEcCCcc------eEEEeecCCCCCCCCCCccccccccccc-----CC
Q 018242           35 GPESLAFDAL----G---EGPYTGVSDGRIIKWHQDQRR------WLHFARTSPNRDGCEGAYEYDHAAKEHI-----CG   96 (359)
Q Consensus        35 ~p~~i~~~~~----G---~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   96 (359)
                      ...++++.++    |   ++++++..++.|..||..+++      ...+                     ...     ..
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~  122 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---------------------DLLDSDMKKH  122 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE---------------------CCSCTTGGGS
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee---------------------cccccccCCC
Confidence            4468899999    8   878888889999999987654      2222                     111     24


Q ss_pred             cceEEEEe----cCCCe-EEEEeCCCcEEEEeCCC------Ce-EE-----EEee--cCCCccccccceEEEeCCCCEEE
Q 018242           97 RPLGLCFN----KTNGD-LYIADAYFGLLKVGPEG------GL-AT-----AVAT--QSEGIPFRFCNSLDIDQSTGIIY  157 (359)
Q Consensus        97 ~p~gi~~~----~~~g~-l~v~~~~~~i~~~~~~~------~~-~~-----~~~~--~~~~~~~~~~~~l~~d~~g~~l~  157 (359)
                      ....++++    +++.. ++++...+.|..++..+      ++ ..     .+..  .........+..++++++| .+.
T Consensus       123 ~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~  201 (397)
T 1sq9_A          123 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA  201 (397)
T ss_dssp             CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred             cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEE
Confidence            46789999    84455 55555555688887765      22 11     1110  0001123457789999999 566


Q ss_pred             EEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC-------CCCCceEEEccCCCEEEEEecCC---CEEEE
Q 018242          158 FTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-------LSFPNGVALSEDGNYILLAETTS---CRILR  227 (359)
Q Consensus       158 v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~d~~~l~v~~~~~---~~i~~  227 (359)
                      ++                  ...+.|..||..+++.......       ......++++|+++.++.+ ..+   +.|..
T Consensus       202 ~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-~~d~~~g~i~i  262 (397)
T 1sq9_A          202 TG------------------FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-HDSNSFGCITL  262 (397)
T ss_dssp             EE------------------CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-EEETTEEEEEE
T ss_pred             EE------------------eCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE-ecCCCCceEEE
Confidence            66                  3356799999887655443332       4556789999999865554 455   78999


Q ss_pred             EEcCCCCCcceeEeec-------------CCCCCCceEECCCCCEEEEEecCC
Q 018242          228 YWLKTSKAGTIEIVAQ-------------LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       228 ~~~~~~~~~~~~~~~~-------------~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      |++...+  ....+..             .......++++++|++.++....+
T Consensus       263 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  313 (397)
T 1sq9_A          263 YETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG  313 (397)
T ss_dssp             EETTTCC--EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred             EECCCCc--ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence            9986432  1222221             122235588899998766555444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.76  E-value=1.4e-05  Score=71.13  Aligned_cols=194  Identities=10%  Similarity=0.011  Sum_probs=113.7

Q ss_pred             CCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe-EEE
Q 018242           35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD-LYI  112 (359)
Q Consensus        35 ~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~-l~v  112 (359)
                      .-.+++++|+ +++++++..++.|..||..+.+.....               ....+.........+++++ +++ ++.
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~---------------~~~~l~~h~~~V~~~~~s~-dg~~l~s  103 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI---------------PQRALRGHSHFVSDVVISS-DGQFALS  103 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE---------------EEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce---------------eeEEEeCCCCCEEEEEECC-CCCEEEE
Confidence            4568999987 677788889999999998764211000               0001222234567899999 555 444


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      +...+.|..++............    .......+...++++ ..++-                 ...+.+..+|.....
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~l~s~-----------------s~d~~~~~~d~~~~~  161 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVG----HTKDVLSVAFSSDNR-QIVSG-----------------SRDKTIKLWNTLGVC  161 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTTSS-CEEEE-----------------ETTSCEEEECTTSCE
T ss_pred             EcccccceEEeecccceeeeecC----CCCceeEEEEeecCc-cceee-----------------cCCCeEEEEEeCCCc
Confidence            55444577788877665433221    112344567778888 44431                 234567788876543


Q ss_pred             EEEEeC--CCCCCceEEEccCCC-EEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          193 VTVLLG--NLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       193 ~~~~~~--~~~~p~gia~~~d~~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ......  .......+++.+++. .++++...++.|..|++...+.  ...+....+....++++++|++.++....+.
T Consensus       162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~  238 (340)
T 4aow_A          162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ  238 (340)
T ss_dssp             EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence            333221  123345677776653 3667777788999999765321  1122222233456899999987776555443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.76  E-value=2.9e-06  Score=76.37  Aligned_cols=249  Identities=11%  Similarity=0.069  Sum_probs=130.0

Q ss_pred             CCCCceEEEccC---CCeeEEecCCCEEEEEEcCC-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           33 AIGPESLAFDAL---GEGPYTGVSDGRIIKWHQDQ-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        33 ~~~p~~i~~~~~---G~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      -..-.+++++|+   |+.++++..++.|..||..+ +.....                   .+.........+++++++.
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~   99 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK-------------------AQQMHTGPVLDVCWSDDGS   99 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE-------------------EEEECSSCEEEEEECTTSS
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE-------------------EeccccCCEEEEEECcCCC
Confidence            345569999999   68788899999999999986 322111                   1222334567899999444


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEE--eCCCCEEEEEeCCCc---ccccc--cee---------
Q 018242          109 DLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDI--DQSTGIIYFTDSSSQ---FQRRN--HIS---------  172 (359)
Q Consensus       109 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--d~~g~~l~v~d~~~~---~~~~~--~~~---------  172 (359)
                      .|+.+...+.|..++.++++...+...     ...+..+.+  ++++++++.+.....   |+...  ...         
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  174 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQAIQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY  174 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCceeeccc-----cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence            555566555688999998876554321     134667787  788873444322110   11000  000         


Q ss_pred             -------eeeecCCCceEEEEeCCCCcEEEEe--CCC-CCCceEEEccCCC---EEEEEecCCCEEEEEEcCCCCC-cce
Q 018242          173 -------VILSGDKTGRLMKYDPATKQVTVLL--GNL-SFPNGVALSEDGN---YILLAETTSCRILRYWLKTSKA-GTI  238 (359)
Q Consensus       173 -------~~~~~~~~g~v~~~d~~~~~~~~~~--~~~-~~p~gia~~~d~~---~l~v~~~~~~~i~~~~~~~~~~-~~~  238 (359)
                             .+......+.+..++..........  ... .....+++.++..   ..+++...++.|..|++..... ...
T Consensus       175 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          175 CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             EEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             EEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence                   0001111223344444322211111  000 1112333333322   1256666778899998865421 111


Q ss_pred             eEeecCCC------------CCCceEECCCCCEEEEEecCCCccccccccCCc-cceeeecCCccceeeeeecccccCcc
Q 018242          239 EIVAQLPG------------FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPIDIVKIHSSLVKLSGNG  305 (359)
Q Consensus       239 ~~~~~~~~------------~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  305 (359)
                      ..+.....            ....++++++|++.++....+.     +..++. .++.+..+......            
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~------------  317 (368)
T 3mmy_A          255 FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-----FSFWDKDARTKLKTSEQLDQP------------  317 (368)
T ss_dssp             EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-----EEEEETTTTEEEEECCCCSSC------------
T ss_pred             eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-----EEEEECCCCcEEEEecCCCCC------------
Confidence            11211110            2456889999975555544443     555553 56666655432221            


Q ss_pred             eEEEEECCCCCEEEEEE
Q 018242          306 GMAMRISEQGNVLEILE  322 (359)
Q Consensus       306 ~~~~~~~~~g~~~~~~~  322 (359)
                      ..-++++++|+.+..-.
T Consensus       318 v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          318 ISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             EEEEEECTTSSCEEEEE
T ss_pred             ceEEEECCCCCeEEEEe
Confidence            34566778877666543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.76  E-value=5.6e-07  Score=84.01  Aligned_cols=197  Identities=11%  Similarity=0.030  Sum_probs=125.7

Q ss_pred             CCCceEEEccCCC-eeEEecCCCEEEEEEcCCcce--EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           34 IGPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRW--LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        34 ~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ....++++++++. +++++..++.|..|+..+...  ..+.               ....+.........+++++.++.+
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~~~~h~~~v~~v~~~p~~~~~  246 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID---------------AKNIFTGHTAVVEDVAWHLLHESL  246 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE---------------CSEEECCCSSCEEEEEECSSCTTE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec---------------cceeecCCCCCEeeeEEeCCCCCE
Confidence            3567899999987 788899999999999876311  0000               000122223446789999866666


Q ss_pred             EEEe-CCCcEEEEeCCCCe----EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          111 YIAD-AYFGLLKVGPEGGL----ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       111 ~v~~-~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +++. ..+.|..+|..++.    ...+..     ....++.++++|++++++++-                 ...+.|..
T Consensus       247 l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg-----------------~~dg~v~v  304 (430)
T 2xyi_A          247 FGSVADDQKLMIWDTRNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATG-----------------SADKTVAL  304 (430)
T ss_dssp             EEEEETTSEEEEEETTCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEE-----------------ETTSEEEE
T ss_pred             EEEEeCCCeEEEEECCCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEE-----------------eCCCeEEE
Confidence            6654 44558889987652    112211     123578899999987566552                 23567888


Q ss_pred             EeCCCC--cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc---------eeEeec---CCCCCCce
Q 018242          186 YDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT---------IEIVAQ---LPGFPDNI  251 (359)
Q Consensus       186 ~d~~~~--~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~---------~~~~~~---~~~~p~~i  251 (359)
                      ||..+.  .+..+.........++++|+++.++++...++.|..|++.......         .+.+..   ....+..+
T Consensus       305 wd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  384 (430)
T 2xyi_A          305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF  384 (430)
T ss_dssp             EETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred             EeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence            987652  2334444445568899999998788888888999999986421100         011111   22346778


Q ss_pred             EECCCCC-EEEEEecCC
Q 018242          252 KRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       252 ~~d~~G~-lwv~~~~~~  267 (359)
                      +++++|. +.++....+
T Consensus       385 ~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          385 SWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             EECSSSTTEEEEEETTS
T ss_pred             EECCCCCCEEEEEECCC
Confidence            9999998 666665544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.75  E-value=7.6e-08  Score=87.80  Aligned_cols=192  Identities=7%  Similarity=-0.043  Sum_probs=109.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ...+++++++|++++++..++.|..||..+++ +....                  .+.........+++++++..++.+
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~~l~~~  118 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL------------------VLLRLNRAATFVRWSPNEDKFAVG  118 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEE------------------ECCCCSSCEEEEECCTTSSCCEEE
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee------------------EecccCCceEEEEECCCCCEEEEE
Confidence            34589999999988888889999999988763 11110                  222233446788999955556666


Q ss_pred             eCCCcEEEEeCCCCe----EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          114 DAYFGLLKVGPEGGL----ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                      ...+.|..++.++++    ...+..    .....+..++++|+|+++..+                  ...+.|..||..
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~~~------------------~~d~~i~iwd~~  176 (377)
T 3dwl_C          119 SGARVISVCYFEQENDWWVSKHLKR----PLRSTILSLDWHPNNVLLAAG------------------CADRKAYVLSAY  176 (377)
T ss_dssp             ESSSCEEECCC-----CCCCEEECS----SCCSCEEEEEECTTSSEEEEE------------------ESSSCEEEEEEC
T ss_pred             ecCCeEEEEEECCcccceeeeEeec----ccCCCeEEEEEcCCCCEEEEE------------------eCCCEEEEEEEE
Confidence            655568888887764    222211    112367789999999944433                  224567777753


Q ss_pred             CC------------------cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc--eeEeecCCCCCC
Q 018242          190 TK------------------QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQLPGFPD  249 (359)
Q Consensus       190 ~~------------------~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~p~  249 (359)
                      ++                  +.............++++|+++. +++...++.|..|++.......  ...+........
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~  255 (377)
T 3dwl_C          177 VRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR  255 (377)
T ss_dssp             CSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEE
T ss_pred             ecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceE
Confidence            21                  11111122334578999999985 4455577899999987553211  111222223345


Q ss_pred             ceEECCCCCEEEEEecCC
Q 018242          250 NIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       250 ~i~~d~~G~lwv~~~~~~  267 (359)
                      .+++.++|++.++...++
T Consensus       256 ~~~~s~~~~~l~~~~~~~  273 (377)
T 3dwl_C          256 SLLWANESAIVAAGYNYS  273 (377)
T ss_dssp             EEEEEETTEEEEEESSSS
T ss_pred             EEEEcCCCCEEEEEcCCc
Confidence            688999998777665444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.75  E-value=2.8e-06  Score=88.38  Aligned_cols=181  Identities=12%  Similarity=0.000  Sum_probs=117.7

Q ss_pred             CCceEEEc-cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCC-cceEEEEecCCCeEEE
Q 018242           35 GPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICG-RPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~-~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~gi~~~~~~g~l~v  112 (359)
                      ...+++++ |||+.+.+.. ++.|+.++..+++...+                     ..... ....++++ ++..+++
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~s-dg~~l~~  353 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV---------------------PEPLRIRYVRRGGD-TKVAFIH  353 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC---------------------SCCSCEEEEEECSS-SEEEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc---------------------cCCCcceEEeeeEc-CCCeEEE
Confidence            46789999 9998555544 68899999887643322                     11112 34566677 4556666


Q ss_pred             EeCCCcEE-EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          113 ADAYFGLL-KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       113 ~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      +.....++ .++..+++.+.+..     ....+..++++|||++|+++.                  ..+.|+.+|.+++
T Consensus       354 ~s~~~~l~~~~d~~~~~~~~l~~-----~~~~~~~~~~SpDG~~la~~~------------------~~~~v~~~d~~tg  410 (1045)
T 1k32_A          354 GTREGDFLGIYDYRTGKAEKFEE-----NLGNVFAMGVDRNGKFAVVAN------------------DRFEIMTVDLETG  410 (1045)
T ss_dssp             EETTEEEEEEEETTTCCEEECCC-----CCCSEEEEEECTTSSEEEEEE------------------TTSEEEEEETTTC
T ss_pred             EECCCceEEEEECCCCCceEecC-----CccceeeeEECCCCCEEEEEC------------------CCCeEEEEECCCC
Confidence            55544688 88988877654431     123567899999999666552                  2357999999888


Q ss_pred             cEEEEe-CCCCCCceEEEccCCCEEEEEecCC---------CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EE
Q 018242          192 QVTVLL-GNLSFPNGVALSEDGNYILLAETTS---------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FW  260 (359)
Q Consensus       192 ~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lw  260 (359)
                      +...+. ........++++|||+++.++....         ..|+.|++++.+   ...+.........++++++|+ |+
T Consensus       411 ~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          411 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEE
T ss_pred             ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---EEEeeCCCcccCCceEcCCCCEEE
Confidence            877665 3333447899999999877765432         589999976532   222222222234578899997 66


Q ss_pred             EEEe
Q 018242          261 VGIH  264 (359)
Q Consensus       261 v~~~  264 (359)
                      +++.
T Consensus       488 ~~s~  491 (1045)
T 1k32_A          488 YLSY  491 (1045)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            5554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.75  E-value=2.9e-06  Score=78.93  Aligned_cols=202  Identities=11%  Similarity=0.082  Sum_probs=115.2

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccC------------CcceEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHIC------------GRPLGLC  102 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~p~gi~  102 (359)
                      .-.+++++++|+++.++..++.|..||..+.+......        ..+.. ....+....            .....++
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~--------~~~~~-~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS--------RGEYN-VYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC--------CCCEE-EEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------cccee-EecccccccccccccccccccCceEEEE
Confidence            44588999999988889999999999987653100000        00000 000111111            3367899


Q ss_pred             EecCC--CeEEEEeCCCcEEEEeCCCCeEEEEe------------------------------------ecCCCcccccc
Q 018242          103 FNKTN--GDLYIADAYFGLLKVGPEGGLATAVA------------------------------------TQSEGIPFRFC  144 (359)
Q Consensus       103 ~~~~~--g~l~v~~~~~~i~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~  144 (359)
                      +++++  ..++.+...+.|..++..++......                                    ..........+
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99844  34555555555777776653321000                                    00001122356


Q ss_pred             ceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-CcEEEEe--------CCCCCCceEEEccCC-CE
Q 018242          145 NSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-KQVTVLL--------GNLSFPNGVALSEDG-NY  214 (359)
Q Consensus       145 ~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~--------~~~~~p~gia~~~d~-~~  214 (359)
                      ..++++++|+ ++++-                  ..+.|..||..+ +......        ........++++|++ + 
T Consensus       181 ~~~~~~~~~~-~l~s~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-  240 (447)
T 3dw8_B          181 NSISINSDYE-TYLSA------------------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-  240 (447)
T ss_dssp             CEEEECTTSS-EEEEE------------------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-
T ss_pred             EEEEEcCCCC-EEEEe------------------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-
Confidence            7899999999 55551                  246788888873 2222211        222345789999998 6 


Q ss_pred             EEEEecCCCEEEEEEcCCCCCcc--eeEeecCCC------------CCCceEECCCCCEEEEEec
Q 018242          215 ILLAETTSCRILRYWLKTSKAGT--IEIVAQLPG------------FPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       215 l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~------------~p~~i~~d~~G~lwv~~~~  265 (359)
                      ++++...++.|..||+.......  ...+.....            ....++++++|++.++...
T Consensus       241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            56666778899999987543211  222322111            3456899999987776655

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.74  E-value=9.3e-06  Score=71.60  Aligned_cols=195  Identities=9%  Similarity=0.039  Sum_probs=112.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~l~v~  113 (359)
                      .-.+++++++|+++.++..++.|..||..+...+...                  .+.........+++.+. +++++++
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~------------------~l~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID------------------TLTGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE------------------EECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE------------------EEccccCCeEEEEecCCCcCCEEEE
Confidence            3457899999998889999999999998653111100                  22223344678888652 3555554


Q ss_pred             -eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC--CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 -DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 -~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                       ...+.|..+|.++++...+... .. ....++.++++|+  |+ +.++-                 ...+.|..+|..+
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~~-~~-h~~~v~~v~~~p~~~g~-~l~s~-----------------s~d~~v~~wd~~~  132 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAVH-AV-HSASVNSVQWAPHEYGP-MLLVA-----------------SSDGKVSVVEFKE  132 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEEE-CC-CSSCEEEEEECCGGGCS-EEEEE-----------------ETTSEEEEEEBCS
T ss_pred             EcCCCEEEEEEcCCCceEEEEEe-ec-CCCceeEEEeCcCCCCc-EEEEE-----------------ECCCcEEEEEecC
Confidence             4444588889877642211110 10 1235678999987  77 44441                 2345777787654


Q ss_pred             Cc---EEEEeCCCCCCceEEEccCC------------CEEEEEecCCCEEEEEEcCCCCCcc--eeEeecCCCCCCceEE
Q 018242          191 KQ---VTVLLGNLSFPNGVALSEDG------------NYILLAETTSCRILRYWLKTSKAGT--IEIVAQLPGFPDNIKR  253 (359)
Q Consensus       191 ~~---~~~~~~~~~~p~gia~~~d~------------~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~p~~i~~  253 (359)
                      +.   ...+.........++++|++            ..++++...++.|..|++.......  ...+.........+++
T Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          133 NGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             SSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             CCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence            32   22233333445678888863            1266777788899999986532110  1112112233466888


Q ss_pred             CCCC---CEEEEEecCC
Q 018242          254 SPRG---GFWVGIHSRR  267 (359)
Q Consensus       254 d~~G---~lwv~~~~~~  267 (359)
                      ++++   ++.++....+
T Consensus       213 sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             CCCCSSSEEEEEEETTS
T ss_pred             CCCCCCceEEEEEECCC
Confidence            8885   4555444444

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.5e-06  Score=78.71  Aligned_cols=192  Identities=11%  Similarity=0.056  Sum_probs=115.9

Q ss_pred             CCceEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCeE
Q 018242           35 GPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGDL  110 (359)
Q Consensus        35 ~p~~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~l  110 (359)
                      .-.++++.++  +++++++..++.|..||..++++....                  ...........++++++  +..+
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~~~~l  118 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA------------------VHAVHSASVNSVQWAPHEYGPLL  118 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEE------------------EECCCSSCEEEEEECCGGGCSEE
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEee------------------eecCCCcceEEEEeCCCCCCCEE
Confidence            3457888876  888888999999999999887533322                  12222344678999985  3445


Q ss_pred             EEEeCCCcEEEEeCCCCeE--EEEeecCCCccccccceEEEeC-------------CCCEEEEEeCCCccccccceeeee
Q 018242          111 YIADAYFGLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQ-------------STGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~-------------~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      +++...+.|..++..++..  ......    ....+..++++|             +++.+..+                
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------  178 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDA----HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG----------------  178 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEEC----CTTCEEEEEECCCC----------CTTCEEEEE----------------
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecC----CCCceEEEEEcCccccccccccCCCCCCEEEEE----------------
Confidence            5556555688888876632  111111    123467788888             67734333                


Q ss_pred             ecCCCceEEEEeCCCCcE--E---EEeCCCCCCceEEEccC---CCEEEEEecCCCEEEEEEcCCCCCcceeEeec---C
Q 018242          176 SGDKTGRLMKYDPATKQV--T---VLLGNLSFPNGVALSED---GNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---L  244 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~--~---~~~~~~~~p~gia~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~  244 (359)
                        ...+.|..||..++..  .   .+.........++++|+   ++ ++++...++.|..|++.............   .
T Consensus       179 --~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  255 (379)
T 3jrp_A          179 --GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF  255 (379)
T ss_dssp             --ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred             --eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence              2245677777654321  1   12223345678999999   55 56666677899999987543221222222   2


Q ss_pred             CCCCCceEECCCCCEEEEEecCC
Q 018242          245 PGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       245 ~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ......++++++|++.++....+
T Consensus       256 ~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          256 PDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             SSCEEEEEECSSSCCEEEEESSS
T ss_pred             CCcEEEEEEcCCCCEEEEecCCC
Confidence            23345678999997555444444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.73  E-value=4e-06  Score=74.44  Aligned_cols=178  Identities=8%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             EEEecCCCeEEEEe---C-CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242          101 LCFNKTNGDLYIAD---A-YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       101 i~~~~~~g~l~v~~---~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ..+.++++.||.++   . ...|++++.++...+.+... .      .  ..++++|+.||+++.+              
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~-~------~--~~~~~~g~~iy~t~~g--------------  165 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH-Y------L--FTCNTSDRYFYYNNPK--------------  165 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS-C------C--CCSEEETTEEEEECTT--------------
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC-C------c--eEeeEECCEEEEEeCC--------------
Confidence            35566688999887   2 23599999998766655431 1      0  2346777779999542              


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEeecCCCCCCceEECC
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP  255 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~  255 (359)
                         ...|++++.+++..+.+..+   +..+++.|+++.|||++..+ ..|++.++++..   .+.+.. ...   ..+++
T Consensus       166 ---~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~-~~~---~~~~~  232 (302)
T 3s25_A          166 ---NGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTE-ANI---EHYNV  232 (302)
T ss_dssp             ---TCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSC-SCE---EEEEE
T ss_pred             ---CceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeC-CCc---ceEEE
Confidence               34699999987766655432   33345678999999998654 589999887642   222222 111   23555


Q ss_pred             CCC-EEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEE
Q 018242          256 RGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISE  334 (359)
Q Consensus       256 ~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~  334 (359)
                      +|. ||.+.....                                      ..+.+.+.+|...+.+....      ...
T Consensus       233 ~g~~Iy~~~~~~~--------------------------------------~~i~~~~~DG~~r~~l~~~~------~~~  268 (302)
T 3s25_A          233 YGSLIFYQRGGDN--------------------------------------PALCVVKNDGTGFKELAKGE------FCN  268 (302)
T ss_dssp             ETTEEEEEECSSS--------------------------------------CEEEEEETTSCCCEEEEESC------EEE
T ss_pred             CCCEEEEEECCCC--------------------------------------cEEEEEECCCCccEEeeCCc------cce
Confidence            553 555443211                                      24556666765444433211      224


Q ss_pred             EEEeCCEEEEecCCCCeEEEEcCC
Q 018242          335 VEEKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       335 ~~~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                      +...++.||...+....|.+++++
T Consensus       269 i~i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          269 INVTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             EEECSSEEEEEETTTCCEEEEESS
T ss_pred             EEEeCCEEEEEECCCCeEEEEECC
Confidence            556788999999888888887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.72  E-value=9.5e-06  Score=79.83  Aligned_cols=155  Identities=13%  Similarity=0.057  Sum_probs=91.2

Q ss_pred             cCCCe-EEEEeC-CCcEEEEeCC--C-CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          105 KTNGD-LYIADA-YFGLLKVGPE--G-GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       105 ~~~g~-l~v~~~-~~~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      |+++. |+++.. ...|+.++.+  + ++.+.+..............++++|||++|+++.....-.        .....
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~--------~~~~~  159 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGE--------GPSDV  159 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSS--------STTCE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCC--------CCCCc
Confidence            75555 555543 3469999987  4 6554442211000123456789999999777663110000        00011


Q ss_pred             CceEEEEeCCC------CcEEEEe-CCCCCCceEEEccCCCEEEEEecCC-------CEEEEEEcCC-CCCcceeEeec-
Q 018242          180 TGRLMKYDPAT------KQVTVLL-GNLSFPNGVALSEDGNYILLAETTS-------CRILRYWLKT-SKAGTIEIVAQ-  243 (359)
Q Consensus       180 ~g~v~~~d~~~------~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~-------~~i~~~~~~~-~~~~~~~~~~~-  243 (359)
                      ...|+++|.++      ++.+.+. .+......++++|||+.|+++....       ..|+.+++++ ........+.. 
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            24699999987      6666654 4334456789999999887776443       5899999873 32222333322 


Q ss_pred             CCCCCCceEECCCCCEEEEEecCC
Q 018242          244 LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       244 ~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .......+++++||++++.+...+
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~  263 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTG  263 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTS
T ss_pred             CCceEcceEECCCCeEEEEECCCC
Confidence            233455688899999777665443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.72  E-value=1.7e-06  Score=79.04  Aligned_cols=159  Identities=12%  Similarity=0.042  Sum_probs=98.4

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-E
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-A  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~  113 (359)
                      ...+++++|||+++.++. ++.+.+|+..+++.....                  ...........++|++ ++..++ +
T Consensus       178 ~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~v~fsp-dg~~l~~~  237 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARK------------------TDFDKNWSLSKINFIA-DDTVLIAA  237 (365)
T ss_dssp             CCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEE------------------CCCCTTEEEEEEEEEE-TTEEEEEE
T ss_pred             ceEEEEEccCCceEEecc-ceeEEEEEeccCcceeee------------------ecCCCCCCEEEEEEcC-CCCEEEEE
Confidence            467999999999555555 566788877665322111                  1111122356889999 555554 4


Q ss_pred             eCCC----cEEEEeCCCCeEEEEee-cCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          114 DAYF----GLLKVGPEGGLATAVAT-QSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       114 ~~~~----~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      ...+    .+..++........... ...+ ....+..++++|+|+ +.++                 ++..+.|..||.
T Consensus       238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~-~las-----------------gs~D~~V~iwd~  298 (365)
T 4h5i_A          238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGE-LAVL-----------------ASNDNSIALVKL  298 (365)
T ss_dssp             EESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSC-EEEE-----------------EETTSCEEEEET
T ss_pred             ecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCC-ceEE-----------------EcCCCEEEEEEC
Confidence            3222    24556665554322111 1111 123567899999999 4444                 123567999999


Q ss_pred             CCCcEEE-Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          189 ATKQVTV-LL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       189 ~~~~~~~-~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ++++... +. .+......++|+||++ ++++.+.+++|.+|++..+
T Consensus       299 ~~~~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          299 KDLSMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTTEEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence            8876543 32 3345578999999998 5677788899999998543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.3e-05  Score=76.60  Aligned_cols=212  Identities=10%  Similarity=0.010  Sum_probs=119.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcc--------eEEEeecCCCCCC---CCCCcccccccccccCCcceEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--------WLHFARTSPNRDG---CEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      .-++++++|||+++.++..++.|.  |++..+        +......|.....   .....+...+...+ ......+++
T Consensus        17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~vaw   93 (588)
T 2j04_A           17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRVCKP   93 (588)
T ss_dssp             SSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEEEEE
Confidence            567999999999566666666665  655432        1122222222110   00001101111122 234678999


Q ss_pred             ecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          104 NKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       104 ~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      +|++..|.++...+.+..++.++ ....+. .....+....+.++++|||++|+++                  +..|.|
T Consensus        94 SPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg------------------s~DGtV  153 (588)
T 2j04_A           94 SPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG------------------NEDGEL  153 (588)
T ss_dssp             CSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE------------------ETTSEE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEE------------------cCCCEE
Confidence            99555566666665688888554 222221 1111112357799999999966666                  335788


Q ss_pred             EEEeCCCCc--------EEEEeCC----CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc-eeEeec-CCCCCC
Q 018242          184 MKYDPATKQ--------VTVLLGN----LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQ-LPGFPD  249 (359)
Q Consensus       184 ~~~d~~~~~--------~~~~~~~----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~p~  249 (359)
                      ..||..++.        +..+..+    ......++++|||   +++...++.+..|++++..... .+.+.. ......
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~  230 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT  230 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence            889988774        2343222    2356799999998   4555668899999987654321 122322 123456


Q ss_pred             ceEECCCCCEEEEEecCCCccccccccCCcc
Q 018242          250 NIKRSPRGGFWVGIHSRRKGISKLVLSFPWI  280 (359)
Q Consensus       250 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  280 (359)
                      .+++.  |+..+++.. +.     +..++..
T Consensus       231 svaFs--g~~LASa~~-~t-----IkLWd~~  253 (588)
T 2j04_A          231 DLKIV--DYKVVLTCP-GY-----VHKIDLK  253 (588)
T ss_dssp             CEEEE--TTEEEEECS-SE-----EEEEETT
T ss_pred             EEEEE--CCEEEEEeC-Ce-----EEEEECC
Confidence            78886  555554443 32     5666543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.70  E-value=1.2e-05  Score=70.69  Aligned_cols=202  Identities=13%  Similarity=0.012  Sum_probs=120.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++++|+.++++..++.|..|+........                 ....+.........+.++  ++.++.+
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------------~~~~~~~~~~~i~~~~~~--~~~l~~~  120 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-----------------PLYTLIGHQGNVCSLSFQ--DGVVISG  120 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-----------------C-CEECCCSSCEEEEEEE--TTEEEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-----------------cccchhhcccCEEEEEec--CCEEEEE
Confidence            456689999999988899999999999976531000                 000122222334567774  5667767


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ...+.|..++  .++.......    ....+..+.+.+ +++.++.+                  ...+.|..+|.. ..
T Consensus       121 ~~d~~i~~~d--~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~-~~  175 (313)
T 3odt_A          121 SWDKTAKVWK--EGSLVYNLQA----HNASVWDAKVVSFSENKFLTA------------------SADKTIKLWQND-KV  175 (313)
T ss_dssp             ETTSEEEEEE--TTEEEEEEEC----CSSCEEEEEEEETTTTEEEEE------------------ETTSCEEEEETT-EE
T ss_pred             eCCCCEEEEc--CCcEEEeccc----CCCceeEEEEccCCCCEEEEE------------------ECCCCEEEEecC-ce
Confidence            6666688888  3332222121    122455677776 77744444                  234678888843 23


Q ss_pred             EEEEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccc
Q 018242          193 VTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS  271 (359)
Q Consensus       193 ~~~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~  271 (359)
                      ...+.. .......++++++++  +++...++.|..|++...+  ....+....+....++++++|.++++..++.    
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~----  247 (313)
T 3odt_A          176 IKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGD--VLRTYEGHESFVYCIKLLPNGDIVSCGEDRT----  247 (313)
T ss_dssp             EEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSCEEEEETTSE----
T ss_pred             EEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchh--hhhhhhcCCceEEEEEEecCCCEEEEecCCE----
Confidence            333332 344567899999986  5566678899999986432  1222322333356789999997666665433    


Q ss_pred             cccccCC-ccceeeecCCc
Q 018242          272 KLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       272 ~~~~~~~-~~g~~~~~~~~  289 (359)
                        +..++ ..++....+..
T Consensus       248 --v~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          248 --VRIWSKENGSLKQVITL  264 (313)
T ss_dssp             --EEEECTTTCCEEEEEEC
T ss_pred             --EEEEECCCCceeEEEec
Confidence              55555 35555554433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.69  E-value=1.1e-05  Score=73.88  Aligned_cols=200  Identities=12%  Similarity=0.043  Sum_probs=118.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe-EEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD-LYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~-l~v~  113 (359)
                      .-.+++++|+|+.+.++..++.+..||..+.....      . .   .+.   ...+....+....+.+.++++. ++.+
T Consensus       110 ~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~------~-~---~~~---~~~~~gh~~~v~~~~~~~~~~~~l~s~  176 (380)
T 3iz6_a          110 WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD------G-N---MPV---SRVLTGHKGYASSCQYVPDQETRLITG  176 (380)
T ss_dssp             TCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC------C-S---STT---CCBCCCCSSCCCCCBCCSSSSSCEEEE
T ss_pred             CEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc------C-C---ccc---eeeccCCCcceEEEEEecCCCCEEEEE
Confidence            34578999999988888899999999986531000      0 0   000   0011122223445666664444 5555


Q ss_pred             eCCCcEEEEeCCCCeEEEEee-cCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC-
Q 018242          114 DAYFGLLKVGPEGGLATAVAT-QSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT-  190 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-  190 (359)
                      ...+.|..+|..+++...... .........+..+.+.+ +++ ++++-                 +..+.|..||... 
T Consensus       177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~sg-----------------s~D~~v~~wd~~~~  238 (380)
T 3iz6_a          177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN-MFISG-----------------SCDTTVRLWDLRIT  238 (380)
T ss_dssp             CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCC-EEEEE-----------------ETTSCEEEEETTTT
T ss_pred             CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCC-EEEEE-----------------ECCCeEEEEECCCC
Confidence            544568889998876543221 11111123456677765 677 66652                 3356788888752 


Q ss_pred             -CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-------CCCCceEECCCCCEEEE
Q 018242          191 -KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-------GFPDNIKRSPRGGFWVG  262 (359)
Q Consensus       191 -~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~p~~i~~d~~G~lwv~  262 (359)
                       .....+..+....+.++++|+++ .+++.+.++.|..||+....  ....+...+       .....++++++|++.++
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  315 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFA  315 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE
T ss_pred             CcceEEECCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEE
Confidence             23334444445678999999998 56777788999999986532  112222111       12356899999987776


Q ss_pred             EecCCC
Q 018242          263 IHSRRK  268 (359)
Q Consensus       263 ~~~~~~  268 (359)
                      ....+.
T Consensus       316 g~~dg~  321 (380)
T 3iz6_a          316 GYSNGD  321 (380)
T ss_dssp             ECTTSC
T ss_pred             EECCCC
Confidence            655553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.66  E-value=6.7e-05  Score=67.39  Aligned_cols=145  Identities=10%  Similarity=0.023  Sum_probs=90.1

Q ss_pred             cceEEEEec--CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           97 RPLGLCFNK--TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        97 ~p~gi~~~~--~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ....+++++  ++..+..+...+.|..+|.++++........   ....+..++++|+|+ +.++               
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~~pdg~-~las---------------  187 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---SDVEYSSGVLHKDSL-LLAL---------------  187 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC---SSCCCCEEEECTTSC-EEEE---------------
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---CCCceEEEEECCCCC-EEEE---------------
Confidence            356788887  5556665665666899999887764332111   122477899999999 5554               


Q ss_pred             eecCCCceEEEEeCCCCcEE--EEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCc-ceeEeecCCCCCC-
Q 018242          175 LSGDKTGRLMKYDPATKQVT--VLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-TIEIVAQLPGFPD-  249 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~--~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~p~-  249 (359)
                        +...+.|..||..+++..  .+.. +......++|+|+++.+..+. . +.|..||+...... ....+.. +..+- 
T Consensus       188 --g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~~v~iwd~~~~~~~~~~~~~~~-~~~~~~  262 (343)
T 3lrv_A          188 --YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-QTVVCFDLRKDVGTLAYPTYTI-PEFKTG  262 (343)
T ss_dssp             --ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-SBEEEEETTSSTTCBSSCCCBC------C
T ss_pred             --EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-CeEEEEEcCCCCcceeeccccc-cccccc
Confidence              133567999998876643  3333 345568999999998666655 4 49999998654221 1111111 11222 


Q ss_pred             --ceEECCCCCEEEEEec
Q 018242          250 --NIKRSPRGGFWVGIHS  265 (359)
Q Consensus       250 --~i~~d~~G~lwv~~~~  265 (359)
                        .++++++|++.++...
T Consensus       263 ~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             CEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCCCEEEEecC
Confidence              3999999987776544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.65  E-value=3.2e-06  Score=75.39  Aligned_cols=192  Identities=11%  Similarity=-0.016  Sum_probs=110.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCe-EEEE
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGD-LYIA  113 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~-l~v~  113 (359)
                      -.+++++++|+++.++..++.|..||..+++.....                  .+.........+++++. +++ |..+
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~------------------~l~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA------------------DLRGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEE------------------EEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEE------------------EEcCCCccEEEEEeCCCCCCCEEEEE
Confidence            458899999998889999999999998765322111                  22223344678888652 344 4445


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC--CCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ...+.|..+|.++++...... ..+ ....++.++++|+  |. +.++-                 ...+.|..++..++
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~-~~~-h~~~V~~v~~~p~~~g~-~lasg-----------------s~D~~i~lwd~~~~  137 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHE-HAG-HDSSVNSVCWAPHDYGL-ILACG-----------------SSDGAISLLTYTGE  137 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEE-ECC-CSSCCCEEEECCTTTCS-CEEEE-----------------CSSSCEEEEEECSS
T ss_pred             ECCCEEEEEECCCCcceEEEE-ccC-CCCceEEEEECCCCCCc-EEEEE-----------------cCCCCEEEEecCCC
Confidence            555568888988764222111 111 1235778999987  66 44441                 23456777776543


Q ss_pred             c-EEEE---eCCCCCCceEEEccCC----------------CEEEEEecCCCEEEEEEcCCCCCcceeEeecC---CCCC
Q 018242          192 Q-VTVL---LGNLSFPNGVALSEDG----------------NYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFP  248 (359)
Q Consensus       192 ~-~~~~---~~~~~~p~gia~~~d~----------------~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p  248 (359)
                      . ....   .........++++|+.                ..++++...++.|..|++....  ..+....+   ....
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--~~~~~~~l~~h~~~V  215 (316)
T 3bg1_A          138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG--QWKEEQKLEAHSDWV  215 (316)
T ss_dssp             SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS--CEEEEECCBCCSSCE
T ss_pred             CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC--ccceeeecccCCCce
Confidence            2 2211   1122234567777762                1257777788899999975321  11112222   2234


Q ss_pred             CceEECCCC----CEEEEEecCC
Q 018242          249 DNIKRSPRG----GFWVGIHSRR  267 (359)
Q Consensus       249 ~~i~~d~~G----~lwv~~~~~~  267 (359)
                      ..+++.+++    ++.++....+
T Consensus       216 ~~v~~sp~~~~~~~~las~s~D~  238 (316)
T 3bg1_A          216 RDVAWAPSIGLPTSTIASCSQDG  238 (316)
T ss_dssp             EEEECCCCSSCSCCEEEEEETTC
T ss_pred             EEEEecCCCCCCCceEEEEcCCC
Confidence            567888875    5555544444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.65  E-value=3.1e-06  Score=79.05  Aligned_cols=156  Identities=13%  Similarity=0.081  Sum_probs=97.8

Q ss_pred             CceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-E
Q 018242           36 PESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-A  113 (359)
Q Consensus        36 p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~  113 (359)
                      -.++++.| ++++++++..++.|..||..++....+...                  .........+.+++ ++.+++ +
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~~~l~~g  227 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS------------------DTINIWFCSLDVSA-SSRMVVTG  227 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC------------------SSCSCCCCCEEEET-TTTEEEEE
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc------------------CCCCccEEEEEECC-CCCEEEEE
Confidence            45899997 688788899999999999987654443211                  11112235688998 555544 4


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|.++..+..+..     ....+..++++|+++.++++-                 +..+.|..||..+.+.
T Consensus       228 ~~dg~i~~wd~~~~~~~~~~~-----h~~~v~~v~~~p~~~~~~~s~-----------------s~d~~v~iwd~~~~~~  285 (435)
T 4e54_B          228 DNVGNVILLNMDGKELWNLRM-----HKKKVTHVALNPCCDWFLATA-----------------SVDQTVKIWDLRQVRG  285 (435)
T ss_dssp             CSSSBEEEEESSSCBCCCSBC-----CSSCEEEEEECTTCSSEEEEE-----------------ETTSBCCEEETTTCCS
T ss_pred             eCCCcEeeeccCcceeEEEec-----ccceEEeeeecCCCceEEEEe-----------------cCcceeeEEecccccc
Confidence            444558888987655332211     123567899999987455441                 2245677777654332


Q ss_pred             EE-E---eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TV-L---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~-~---~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .. +   ..+......++|+||++.| ++...++.|..|++...
T Consensus       286 ~~~~~~~~~h~~~v~~~~~spdg~~l-~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          286 KASFLYSLPHRHPVNAACFSPDGARL-LTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             SSCCSBCCBCSSCEEECCBCTTSSEE-EEEESSSCEEEEESSSS
T ss_pred             cceEEEeeeccccccceeECCCCCee-EEEcCCCEEEEEECCCC
Confidence            11 1   1122335688999999854 55567789999998653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.65  E-value=3.2e-06  Score=75.55  Aligned_cols=203  Identities=12%  Similarity=0.051  Sum_probs=126.0

Q ss_pred             CCCceEEEccCCC-eeEEecCCCEEEEEEc-CCcceEEEeecCCCCCCCCCCcccccccccc--cCCcceEEEEecCCCe
Q 018242           34 IGPESLAFDALGE-GPYTGVSDGRIIKWHQ-DQRRWLHFARTSPNRDGCEGAYEYDHAAKEH--ICGRPLGLCFNKTNGD  109 (359)
Q Consensus        34 ~~p~~i~~~~~G~-~l~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~gi~~~~~~g~  109 (359)
                      ....+++++++|+ .++++..++.|..||. .+++...+                     ..  .......+++++ ++.
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------~~~~~~~~v~~l~~~~-~~~  114 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL---------------------TNNEANLGICRICKYG-DDK  114 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC---------------------BSCCCCSCEEEEEEET-TTE
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEec---------------------cccCCCCceEEEEeCC-CCE
Confidence            4567899999999 8999999999999999 87644332                     22  334467899998 777


Q ss_pred             EEEEeCCCcEEEEeCCC---------CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          110 LYIADAYFGLLKVGPEG---------GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ++.+...+.|..+|..+         ++.  + ....  ....+..+.+++++  ++++                  ...
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~-~~~~--~~~~v~~~~~~~~~--l~~~------------------~~d  169 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIAVKNLN--S-NNTK--VKNKIFTMDTNSSR--LIVG------------------MNN  169 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEESC--S-SSSS--SCCCEEEEEECSSE--EEEE------------------EST
T ss_pred             EEEEcCCCeEEEEcccccccccccccCCe--e-eEEe--eCCceEEEEecCCc--EEEE------------------eCC
Confidence            77777666688888754         221  1 1111  12356778888776  5555                  224


Q ss_pred             ceEEEEeCCC-Cc--EEEEe-CCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCC--C--CcceeEeecCC------
Q 018242          181 GRLMKYDPAT-KQ--VTVLL-GNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTS--K--AGTIEIVAQLP------  245 (359)
Q Consensus       181 g~v~~~d~~~-~~--~~~~~-~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~------  245 (359)
                      +.|..||..+ +.  ..... .....+..++++| +++. +++...++.+..|+++..  .  ......+....      
T Consensus       170 ~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-EEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence            5788888876 33  22222 2234567899999 8885 555556789999988654  1  11222232211      


Q ss_pred             ---CCCCceEECCCCCEEEEEecCCCccccccccCCc-cceeeecCCc
Q 018242          246 ---GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPI  289 (359)
Q Consensus       246 ---~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  289 (359)
                         .....++++++|++.++....+.     +..++. .++.+..+..
T Consensus       249 ~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          249 NLAYPVNSIEFSPRHKFLYTAGSDGI-----ISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSC-----EEEEETTTTEEEEECCC
T ss_pred             ccceeEEEEEEcCCCCEEEEecCCce-----EEEEcCccHhHhhhhhc
Confidence               13456888999875554444443     555543 4665555443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.65  E-value=2.6e-06  Score=84.68  Aligned_cols=147  Identities=10%  Similarity=-0.017  Sum_probs=92.9

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .+.+++++|||++++. ..++.|+.||..+++........                 .........++++|++..|..+.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~-----------------~~~~~~v~~~~~SpDg~~l~~~~   79 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK-----------------KIESLRAIRYEISPDREYALFSY   79 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT-----------------TTTTTTCSEEEECTTSSEEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc-----------------cccccccceEEECCCCCEEEEEe
Confidence            4788999999995554 56789999999887544332100                 00001356899999444455554


Q ss_pred             CC---------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          115 AY---------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       115 ~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      ..         ..|+.+|.++++.+.+... . .....+..++++|||++|.++.                   .+.|+.
T Consensus        80 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~-~~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~  138 (723)
T 1xfd_A           80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-E-VSNAKLQYAGWGPKGQQLIFIF-------------------ENNIYY  138 (723)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCT-T-CCSCCCSBCCBCSSTTCEEEEE-------------------TTEEEE
T ss_pred             cCccceeecceeeEEEEECCCCceEeccCC-c-cccccccccEECCCCCEEEEEE-------------------CCeEEE
Confidence            32         3578899988876444221 1 1112366789999998565551                   147999


Q ss_pred             EeCCCCcEEEEeCC-CC------------------CCceEEEccCCCEEEEEec
Q 018242          186 YDPATKQVTVLLGN-LS------------------FPNGVALSEDGNYILLAET  220 (359)
Q Consensus       186 ~d~~~~~~~~~~~~-~~------------------~p~gia~~~d~~~l~v~~~  220 (359)
                      ++..+++...+... ..                  ...+++++|||+.|+++..
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~  192 (723)
T 1xfd_A          139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (723)
T ss_dssp             ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             EECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence            99887766554332 11                  2257999999998777653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.63  E-value=8.4e-05  Score=66.03  Aligned_cols=187  Identities=12%  Similarity=0.097  Sum_probs=113.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...+++++++|++++++..++.|..|+..........                    .........+.+.+.+..++.+.
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~s~s  147 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF--------------------VGHTKDVLSVAFSSDNRQIVSGS  147 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------ECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecccceeeee--------------------cCCCCceeEEEEeecCccceeec
Confidence            4568899999998888999999999998876332211                    11222344566777455555555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCE-EEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGI-IYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+.+..++.............   ....+..+.+.+++.. ++++.                 ...+.|..+|..+++.
T Consensus       148 ~d~~~~~~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~s~-----------------~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          148 RDKTIKLWNTLGVCKYTVQDES---HSEWVSCVRFSPNSSNPIIVSC-----------------GWDKLVKVWNLANCKL  207 (340)
T ss_dssp             TTSCEEEECTTSCEEEEECSSS---CSSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTTEE
T ss_pred             CCCeEEEEEeCCCceEEEEecc---ccCcccceEEccCCCCcEEEEE-----------------cCCCEEEEEECCCCce
Confidence            5556777887765433221111   1224455666655431 44441                 2345788899887766


Q ss_pred             EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242          194 TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       194 ~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      .... ........++++|+++. +++...++.|..|++...+  ....+ ........+++.+++.+.++..+
T Consensus       208 ~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~~~~~d  276 (340)
T 4aow_A          208 KTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDLNEGK--HLYTL-DGGDIINALCFSPNRYWLCAATG  276 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSE-EEEEETTCEEEEEETTTTE--EEEEE-ECSSCEEEEEECSSSSEEEEEET
T ss_pred             eeEecCCCCcEEEEEECCCCCE-EEEEeCCCeEEEEEeccCc--eeeee-cCCceEEeeecCCCCceeeccCC
Confidence            5443 23344578999999984 5556677899999976431  11111 12223455778888877776654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.63  E-value=2.5e-05  Score=77.49  Aligned_cols=211  Identities=11%  Similarity=0.019  Sum_probs=127.3

Q ss_pred             CCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .-.++++.+++ +++.++..++.|..|+..+.....               +.....+.........+++++++..|..+
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sg  448 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---------------GVAQRRLTGHSHFVEDVVLSSDGQFALSG  448 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---------------CEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---------------ccccceecCCCCcEEEEEECCCCCEEEEE
Confidence            44578888764 667788999999999986531000               00000122233446789999944444445


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|..+++.......    ....+..++++++|+ ..++-                 +..+.|..||..+...
T Consensus       449 s~Dg~v~vwd~~~~~~~~~~~~----h~~~v~~~~~s~~~~-~l~s~-----------------s~D~~i~iwd~~~~~~  506 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVSTRRFVG----HTKDVLSVAFSLDNR-QIVSA-----------------SRDRTIKLWNTLGECK  506 (694)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC----CSSCEEEEEECTTSS-CEEEE-----------------ETTSCEEEECTTSCEE
T ss_pred             eCCCcEEEEECCCCcceeEEeC----CCCCEEEEEEeCCCC-EEEEE-----------------eCCCEEEEEECCCCcc
Confidence            5455688899988765432221    123567899999999 44441                 2356788888765433


Q ss_pred             EEEeCC----CCCCceEEEccCCC-EEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCC
Q 018242          194 TVLLGN----LSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       194 ~~~~~~----~~~p~gia~~~d~~-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ..+...    ......++++|++. .++++.+.++.|..|++...+.  ...+....+....++++++|++.++....+.
T Consensus       507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGV  584 (694)
T ss_dssp             EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred             eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            333221    22346788998763 3677777889999999865321  1222222333566899999988776655554


Q ss_pred             ccccccccCC-ccceeeecCCc
Q 018242          269 GISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       269 ~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                           +.+++ ..++.+..+..
T Consensus       585 -----i~iwd~~~~~~~~~~~~  601 (694)
T 3dm0_A          585 -----VLLWDLAEGKKLYSLEA  601 (694)
T ss_dssp             -----CEEEETTTTEEEECCBC
T ss_pred             -----EEEEECCCCceEEEecC
Confidence                 55554 35665555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.63  E-value=2.5e-06  Score=84.95  Aligned_cols=140  Identities=9%  Similarity=-0.004  Sum_probs=89.8

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      +.++.+.++|+ ++....++.|+.||..+++.+.+...                 ..........++++|++..|.++..
T Consensus        18 ~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~-----------------~~~~~~~~~~~~~SpDg~~la~~~~   79 (719)
T 1z68_A           18 TFFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSN-----------------RTMKSVNASNYGLSPDRQFVYLESD   79 (719)
T ss_dssp             CCCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECH-----------------HHHHTTTCSEEEECTTSSEEEEEEE
T ss_pred             CCccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEcc-----------------ccccccceeeEEECCCCCeEEEEec
Confidence            45889999997 55555678999999988765443210                 0000012457889994455555543


Q ss_pred             ---------CCcEEEEeCCCCeE---EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          116 ---------YFGLLKVGPEGGLA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       116 ---------~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                               ...|+.+|.++++.   ..+    .    ..+..++++|||++|.++.                   .+.|
T Consensus        80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~~-------------------~~~i  132 (719)
T 1z68_A           80 YSKLWRYSYTATYYIYDLSNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYVY-------------------QNNI  132 (719)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCC----C----SSBCCEEECSSTTCEEEEE-------------------TTEE
T ss_pred             CceeEEeecceEEEEEECCCCccccceec----C----cccccceECCCCCEEEEEE-------------------CCeE
Confidence                     23588899998875   221    1    2466799999999665551                   2479


Q ss_pred             EEEeCCCCcEEEEeCCC-------------------CCCceEEEccCCCEEEEEec
Q 018242          184 MKYDPATKQVTVLLGNL-------------------SFPNGVALSEDGNYILLAET  220 (359)
Q Consensus       184 ~~~d~~~~~~~~~~~~~-------------------~~p~gia~~~d~~~l~v~~~  220 (359)
                      +.++..+++...+....                   ....+++++|||+.|+.+..
T Consensus       133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~  188 (719)
T 1z68_A          133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF  188 (719)
T ss_dssp             EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE
T ss_pred             EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE
Confidence            99998777665443211                   11247999999998776653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.62  E-value=3.8e-06  Score=86.01  Aligned_cols=198  Identities=15%  Similarity=0.058  Sum_probs=128.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ....+++++|+|+++.++..++.|..|+..+.+...                    ... .......++|++ +..|..+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~-~~~~V~~l~fsp-g~~L~S~   75 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI--------------------KLE-DRSAIKEMRFVK-GIYLVVI   75 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE--------------------ECS-SCCCEEEEEEET-TTEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE--------------------EcC-CCCCEEEEEEcC-CCEEEEE
Confidence            456799999999988899999999999987653221                    111 123467899998 5556666


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|.++++...... .    ...+..++++|+|++++++                  ...+.|..||.+++..
T Consensus        76 s~D~~v~lWd~~~~~~~~~~~-~----~~~V~~v~~sp~g~~l~sg------------------s~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           76 NAKDTVYVLSLYSQKVLTTVF-V----PGKITSIDTDASLDWMLIG------------------LQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             ETTCEEEEEETTTCSEEEEEE-C----SSCEEEEECCTTCSEEEEE------------------ETTSCEEEEETTTTEE
T ss_pred             ECcCeEEEEECCCCcEEEEEc-C----CCCEEEEEECCCCCEEEEE------------------cCCCcEEEEECCCCcc
Confidence            656668899998876432222 1    1356789999999966665                  2356799999887765


Q ss_pred             EEEe------------CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC-----------------
Q 018242          194 TVLL------------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-----------------  244 (359)
Q Consensus       194 ~~~~------------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------  244 (359)
                      ..+.            ........++|+|++..++++...++.| .||+.....  ...+...                 
T Consensus       133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~  209 (902)
T 2oaj_A          133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEK  209 (902)
T ss_dssp             EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSC
T ss_pred             ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccc
Confidence            3211            1223467899999754466667788899 999865421  1122110                 


Q ss_pred             -CCCCCceEECCCCCEEEEEecCCCccccccccCCc-cceee
Q 018242          245 -PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGNVL  284 (359)
Q Consensus       245 -~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~  284 (359)
                       ......+++.++|++.++....+.     +..++. +++.+
T Consensus       210 h~~~V~~v~fspdg~~lasgs~Dg~-----i~lWd~~~g~~~  246 (902)
T 2oaj_A          210 RTPKVIQSLYHPNSLHIITIHEDNS-----LVFWDANSGHMI  246 (902)
T ss_dssp             BCCCEEEEEECTTSSEEEEEETTCC-----EEEEETTTCCEE
T ss_pred             cCCCeEEEEEcCCCCEEEEEECCCe-----EEEEECCCCcEE
Confidence             012345889999987776665554     555543 45543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.61  E-value=1.9e-05  Score=78.98  Aligned_cols=142  Identities=8%  Similarity=-0.039  Sum_probs=86.7

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .++.+.+||.+++.+  ++.|+.||..+++-+.+....               ...........+.++|++..|.++...
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~Spdg~~l~~~~~~   82 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENS---------------TFDEFGHSINDYSISPDGQFILLEYNY   82 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTT---------------TTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEech---------------hhhhhcccccceEECCCCCEEEEEECC
Confidence            378999999855555  789999999887544332110               001111122347889955555555421


Q ss_pred             ---------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          117 ---------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       117 ---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                               ..++.+|.++++.+.+...     .......+++|||++|.++.                   .+.|+.++
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~-----~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~  138 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKRQLITEERI-----PNNTQWVTWSPVGHKLAYVW-------------------NNDIYVKI  138 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSCC-----CTTEEEEEECSSTTCEEEEE-------------------TTEEEEES
T ss_pred             eeeEEEccceEEEEEECCCCcEEEcccC-----CCcceeeEECCCCCEEEEEE-------------------CCeEEEEE
Confidence                     2367899999876543211     12456789999999665551                   23688888


Q ss_pred             CCCCcEEEEeCCC-------------------CCCceEEEccCCCEEEEEe
Q 018242          188 PATKQVTVLLGNL-------------------SFPNGVALSEDGNYILLAE  219 (359)
Q Consensus       188 ~~~~~~~~~~~~~-------------------~~p~gia~~~d~~~l~v~~  219 (359)
                      ..++....+....                   ....+++++|||+.|....
T Consensus       139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence            8777655442211                   1123588999999766653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.60  E-value=1.3e-05  Score=77.51  Aligned_cols=204  Identities=12%  Similarity=0.137  Sum_probs=122.3

Q ss_pred             CceEEEcc--CCCeeEEecCCCEEEEEEcCCc------ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242           36 PESLAFDA--LGEGPYTGVSDGRIIKWHQDQR------RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN  107 (359)
Q Consensus        36 p~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (359)
                      ..+++++|  +|++++++..++.|..||..++      +.....                  .+.........+++++++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~s~~~  128 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS------------------EFQVLAGPISDISWDFEG  128 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE------------------EEECCSSCEEEEEECTTS
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccc------------------hhhcccccEEEEEEeCCC
Confidence            57899999  9998888889999999998643      111111                  122223446789999955


Q ss_pred             CeEEEEeCC----CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          108 GDLYIADAY----FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       108 g~l~v~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ..++++...    ..|..++  .++......   + ....+..+.++++++.++++-                 ...+.|
T Consensus       129 ~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~-----------------~~d~~v  185 (615)
T 1pgu_A          129 RRLCVVGEGRDNFGVFISWD--SGNSLGEVS---G-HSQRINACHLKQSRPMRSMTV-----------------GDDGSV  185 (615)
T ss_dssp             SEEEEEECCSSCSEEEEETT--TCCEEEECC---S-CSSCEEEEEECSSSSCEEEEE-----------------ETTTEE
T ss_pred             CEEEEeccCCCCccEEEEEE--CCCcceeee---c-CCccEEEEEECCCCCcEEEEE-----------------eCCCcE
Confidence            555555433    2355556  333222111   1 223577899999997333331                 235678


Q ss_pred             EEEeCCCCcEEEEeC-CCC---CCceEEEccC-CCEEEEEecCCCEEEEEEcCCCCCcceeEe-e---cCCCCCCceEEC
Q 018242          184 MKYDPATKQVTVLLG-NLS---FPNGVALSED-GNYILLAETTSCRILRYWLKTSKAGTIEIV-A---QLPGFPDNIKRS  254 (359)
Q Consensus       184 ~~~d~~~~~~~~~~~-~~~---~p~gia~~~d-~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~---~~~~~p~~i~~d  254 (359)
                      ..||..+++...... ...   ....++++|+ ++.+ ++...++.|..|++...+.  ...+ .   ........+++.
T Consensus       186 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~  262 (615)
T 1pgu_A          186 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV-ITVGSDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWL  262 (615)
T ss_dssp             EEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE-EEEETTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEES
T ss_pred             EEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEE-EEEeCCCeEEEEECCCCCE--eEEecccccccCCceEEEEEc
Confidence            999987766544333 333   4678999999 8754 4455678999999764321  2222 1   112234568888


Q ss_pred             CCCCEEEEEecCCCccccccccCCc-cceeeecCCc
Q 018242          255 PRGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPI  289 (359)
Q Consensus       255 ~~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  289 (359)
                       +|++.++....+.     +..++. .++.+..+..
T Consensus       263 -~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          263 -DSQKFATVGADAT-----IRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             -SSSEEEEEETTSE-----EEEEETTTTEEEEEEEC
T ss_pred             -CCCEEEEEcCCCc-----EEEEECCCCcEEEEEcC
Confidence             8876665555443     455543 4665555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.59  E-value=0.00027  Score=61.99  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=90.3

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..|++++++ +|.++. ++.|..||..+++.....                  ...........+++++++..+..+...
T Consensus        29 ~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~------------------~~~~~~~~V~~v~~~~~~~~l~sgs~D   88 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLL------------------QMEQPGEYISSVAWIKEGNYLAVGTSS   88 (318)
T ss_dssp             BCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEE------------------ECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEE------------------EecCCCCeEEEEEECCCCCEEEEEECC
Confidence            468898876 466664 689999999987544321                  122223346789999944445555545


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc--EE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ--VT  194 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~  194 (359)
                      +.|..++.++++....... .     ...-..+..+++ +.++.                 ...+.+..++..+..  ..
T Consensus        89 g~v~iw~~~~~~~~~~~~~-h-----~~~~~~~~~~~~-~l~s~-----------------~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           89 AEVQLWDVQQQKRLRNMTS-H-----SARVGSLSWNSY-ILSSG-----------------SRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             SEEEEEETTTTEEEEEEEC-C-----SSCEEEEEEETT-EEEEE-----------------ETTSEEEEEETTSSSCEEE
T ss_pred             CcEEEeecCCceeEEEecC-c-----cceEEEeecCCC-EEEEE-----------------ecCCceEeeecCCCceeEE
Confidence            5588889998875432221 1     111234455566 44431                 123445555554332  22


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ...........+++.++++. +++...++.|..|++...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCB
T ss_pred             EEcCccCceEEEEEcCCCCE-EEEEecCcceeEEECCCC
Confidence            23344445667888888884 556667789999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.58  E-value=4.9e-06  Score=75.99  Aligned_cols=190  Identities=13%  Similarity=0.045  Sum_probs=104.3

Q ss_pred             CceEEEccCCCeeEEe-cC--CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecCCCeEE
Q 018242           36 PESLAFDALGEGPYTG-VS--DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKTNGDLY  111 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~-~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~g~l~  111 (359)
                      +.+++++|||+.++.. ..  ...|+.+|..+++...+.                     ..... ..++.+++++..|+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~---------------------~~~~~~~~~~~~spdg~~l~   96 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT---------------------EGKGDNTFGGFISTDERAFF   96 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC---------------------CSSCBCTTTCEECTTSSEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee---------------------cCCCCccccceECCCCCEEE
Confidence            6778899999865443 32  247999999887544321                     11111 12356788555665


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCccccccc--e----------------EEEeCCCCEEEEEeCCCccccccceee
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEGIPFRFCN--S----------------LDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      ++.....|++++.++++.+.+......   ..+.  .                ..++|+|+++.+...            
T Consensus        97 ~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~------------  161 (396)
T 3c5m_A           97 YVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF------------  161 (396)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH------------
T ss_pred             EEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCccccccccccccCCCCcceeeeee------------
Confidence            665555699999988876554331111   0010  0                112233331111100            


Q ss_pred             eeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEcc-CCCEEEEEecCC-----CEEEEEEcCCCCCcceeEeec-C-C
Q 018242          174 ILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSE-DGNYILLAETTS-----CRILRYWLKTSKAGTIEIVAQ-L-P  245 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~-d~~~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~~~-~-~  245 (359)
                       ........|+.+|.++++...+.........++++| |++.+++.....     ..|+.+++++...   +.+.. . .
T Consensus       162 -~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~  237 (396)
T 3c5m_A          162 -YHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEG  237 (396)
T ss_dssp             -HHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTT
T ss_pred             -ccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCC
Confidence             000224579999998887766554444456788999 777555544332     4799998754321   11111 1 1


Q ss_pred             CCCCceEECCCCC-EEEEEec
Q 018242          246 GFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       246 ~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      ..+..++++++|+ |+++...
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~  258 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYF  258 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEecC
Confidence            1234468899996 5655544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.58  E-value=0.00019  Score=66.44  Aligned_cols=266  Identities=11%  Similarity=0.066  Sum_probs=140.1

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      ..|++++++ +|.++. ++.|+.||..+++.....                  ...........+++++++..|.++...
T Consensus       109 ~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~------------------~~~~~~~~V~sv~fspdg~~lasgs~D  168 (420)
T 4gga_A          109 NLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLL------------------QMEQPGEYISSVAWIKEGNYLAVGTSS  168 (420)
T ss_dssp             BCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEE------------------ECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEE------------------EecCCCCcEEEEEECCCCCEEEEEECC
Confidence            457777654 476766 689999999988654321                  222223346789999944555556655


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc--EE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ--VT  194 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~  194 (359)
                      +.|..++.++++....... .   ...+.  .+..+++ +.++-                 ...+.+..+|.....  ..
T Consensus       169 g~v~iWd~~~~~~~~~~~~-h---~~~v~--~~s~~~~-~l~sg-----------------s~d~~i~~~d~~~~~~~~~  224 (420)
T 4gga_A          169 AEVQLWDVQQQKRLRNMTS-H---SARVG--SLSWNSY-ILSSG-----------------SRSGHIHHHDVRVAEHHVA  224 (420)
T ss_dssp             SCEEEEETTTTEEEEEECC-C---SSCEE--EEEEETT-EEEEE-----------------ETTSEEEEEETTSSSCEEE
T ss_pred             CeEEEEEcCCCcEEEEEeC-C---CCceE--EEeeCCC-EEEEE-----------------eCCCceeEeeecccceeeE
Confidence            5688999998875432221 1   11223  3344566 44441                 234567777765432  22


Q ss_pred             EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcc--eeEeecCCCCCCceEECCCC-CEEEEEecC-CCcc
Q 018242          195 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQLPGFPDNIKRSPRG-GFWVGIHSR-RKGI  270 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~p~~i~~d~~G-~lwv~~~~~-~~~~  270 (359)
                      .+.........+.+.++++. +++...++.+..|+........  ........+....+++.+.+ ++.+...+. ... 
T Consensus       225 ~~~~h~~~~~~~~~~~~g~~-l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-  302 (420)
T 4gga_A          225 TLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-  302 (420)
T ss_dssp             EEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-
T ss_pred             EecccccceeeeeecCCCCe-eeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-
Confidence            33444455678899999985 4555567889999976543221  11121222223456777754 455433221 111 


Q ss_pred             ccccccCC-ccceeeecCCccceeeeeeccccc----------CcceEEEEEC-CCCCEEEEEEccCCceeeceEEEEEe
Q 018242          271 SKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLS----------GNGGMAMRIS-EQGNVLEILEEIGRKMWRSISEVEEK  338 (359)
Q Consensus       271 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~-~~g~~~~~~~~~~g~~~~~~~~~~~~  338 (359)
                         +..++ ..++....+..... +..+.+...          .+ +.+..+| +.+..+..+..+.    ..+..+...
T Consensus       303 ---I~iwd~~t~~~~~~~~~~~~-v~~~~~~~~~~~lv~~sg~~d-~~I~iwd~~~~~~v~~l~gH~----~~V~~l~~s  373 (420)
T 4gga_A          303 ---IRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ-NQLVIWKYPTMAKVAELKGHT----SRVLSLTMS  373 (420)
T ss_dssp             ---EEEEETTTTEEEEEEECSSC-EEEEEEETTTTEEEEEECTTT-CCEEEEETTTCCEEEEECCCS----SCEEEEEEC
T ss_pred             ---EEEEeCCccccceeeccccc-eeeeeecCCCCeEEEEEecCC-CEEEEEECCCCcEEEEEcCCC----CCEEEEEEc
Confidence               44443 35555554443322 222222211          11 2333344 3345555554322    234455444


Q ss_pred             -CCEEEEecCCCCeEEEEcC
Q 018242          339 -DGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       339 -~g~l~ig~~~~~~l~~~~~  357 (359)
                       +|+..+++-.+..|.+-++
T Consensus       374 pdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          374 PDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             TTSSCEEEEETTTEEEEECC
T ss_pred             CCCCEEEEEecCCeEEEEEC
Confidence             5555555444666777665

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.57  E-value=1.9e-05  Score=73.32  Aligned_cols=166  Identities=10%  Similarity=0.018  Sum_probs=99.7

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCc-ceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-Ce
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GD  109 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~  109 (359)
                      -....+++++++|+.+.++ .++.|..||..+. +.. .+...+              ..+.........+++++++ ..
T Consensus       177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~v~~~~~~p~~~~~  241 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP--------------ANMEELTEVITAAEFHPNSCNT  241 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC--------------SSGGGCCCCEEEEEECSSCTTE
T ss_pred             CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc--------------ccccccCcceEEEEECCCCCcE
Confidence            3456799999999967776 7899999999843 111 111000              0122233446789999944 34


Q ss_pred             EEEEeCCCcEEEEeCCCCeE-----EEEeecCCCc-------cccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          110 LYIADAYFGLLKVGPEGGLA-----TAVATQSEGI-------PFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       110 l~v~~~~~~i~~~~~~~~~~-----~~~~~~~~~~-------~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ++.+...+.|..+|..+++.     ..+.......       ....+..++++|+|+ +.++-                 
T Consensus       242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~-----------------  303 (447)
T 3dw8_B          242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTR-----------------  303 (447)
T ss_dssp             EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEE-----------------
T ss_pred             EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEe-----------------
Confidence            44455555688999887663     3222110000       001577899999999 44441                 


Q ss_pred             CCCceEEEEeCCC-CcEE-EEeCCCC--C-------------CceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          178 DKTGRLMKYDPAT-KQVT-VLLGNLS--F-------------PNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       178 ~~~g~v~~~d~~~-~~~~-~~~~~~~--~-------------p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .. +.|..||..+ ++.. .+.....  .             ...++++|+++.+ ++...++.|..|++...
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTC
T ss_pred             eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCC
Confidence            22 5788888864 3321 2211110  0             1238999999865 66778899999998654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.55  E-value=2.7e-05  Score=69.01  Aligned_cols=178  Identities=8%  Similarity=0.092  Sum_probs=105.4

Q ss_pred             CCCeeEEec--CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-----
Q 018242           44 LGEGPYTGV--SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-----  116 (359)
Q Consensus        44 ~G~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-----  116 (359)
                      +|..+|.+.  .+++|++.+.++...+.+.                     .  ..+..|  .++++.||.+...     
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~---------------------~--~~~~~i--~~~g~~Iyy~~~~~~~~~   78 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLS---------------------N--DTAMYI--NADKNYVYYVRNNNQKIT   78 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEE---------------------E--EEEEEE--EECSSEEEEEEECC----
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEcc---------------------C--CceeeE--EEcCCEEEEEECCCCccc
Confidence            444355543  2579999999876444332                     1  112333  4447788877532     


Q ss_pred             ---------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          117 ---------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       117 ---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                               ..|++++.++++.+.+...         .+..+.++|++||+++..              ......|++++
T Consensus        79 ~~~~~~~n~~~Iy~i~~dg~~~~~l~~~---------~~~~~s~~g~~Iy~~~~~--------------~~~~~~Iy~~~  135 (302)
T 3s25_A           79 SQTFFSYDRNSLCRIKRNGHGSTVLDPD---------PCIYASLIGNYIYYLHYD--------------TQTATSLYRIR  135 (302)
T ss_dssp             --CCSSCCSEEEEEEETTSCCCEEEECS---------CEEEEEEETTEEEEEEES--------------SSSCEEEEEEE
T ss_pred             ccceeccCCCeEEEEeCCCCcceEeecC---------CccEEEEeCCEEEEEeec--------------CCCCceEEEEE
Confidence                     2599999998875554321         123566677779998610              01234799999


Q ss_pred             CCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCC-CEEEEEecC
Q 018242          188 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG-GFWVGIHSR  266 (359)
Q Consensus       188 ~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~lwv~~~~~  266 (359)
                      .++...+.+.....    .+++++++.|||++....+|++.++++..   .+.+..  + +..+.++|+| .|+.+.+..
T Consensus       136 ~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~---~~~l~~--~-~~~~~~~P~g~~iy~t~~~~  205 (302)
T 3s25_A          136 IDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS---EALFYD--C-NCYKPVVLDDTNVYYMDVNR  205 (302)
T ss_dssp             TTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE---EEEEEC--S-CEEEEEEEETTEEEEEEGGG
T ss_pred             CCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC---EEEEeC--C-CccceeeecCCEEEEEEcCC
Confidence            98666555544322    45678999999998878899999986542   222222  1 2234455554 577777654


Q ss_pred             CCccccccccCCcccee
Q 018242          267 RKGISKLVLSFPWIGNV  283 (359)
Q Consensus       267 ~~~~~~~~~~~~~~g~~  283 (359)
                      +..    +.+.+.+|.-
T Consensus       206 ~~~----I~~~~ldG~~  218 (302)
T 3s25_A          206 DNA----IVHVNINNPN  218 (302)
T ss_dssp             TTE----EEEECSSSCC
T ss_pred             CcE----EEEEECCCCC
Confidence            322    4444444443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.55  E-value=1.5e-05  Score=70.26  Aligned_cols=190  Identities=12%  Similarity=0.124  Sum_probs=109.8

Q ss_pred             ceEEEcc--CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-Ce-EEE
Q 018242           37 ESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GD-LYI  112 (359)
Q Consensus        37 ~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~-l~v  112 (359)
                      .++++.+  +|+++.++..++.|..||..++++....                  .+.........++++++. +. |..
T Consensus        57 ~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~------------------~~~~h~~~v~~v~~~p~~~g~~l~s  118 (297)
T 2pm7_B           57 WRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA------------------VHAVHSASVNSVQWAPHEYGPMLLV  118 (297)
T ss_dssp             EEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE------------------EECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             EEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE------------------EeecCCCceeEEEeCcCCCCcEEEE
Confidence            3678865  4887888899999999999865322110                  111222345678898842 44 444


Q ss_pred             EeCCCcEEEEeCCCCe-E--EEEeecCCCccccccceEEEeCC-------------CCEEEEEeCCCccccccceeeeee
Q 018242          113 ADAYFGLLKVGPEGGL-A--TAVATQSEGIPFRFCNSLDIDQS-------------TGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~d~~-------------g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      +...+.|..++..++. .  ..+..     ....++.+.++|+             ++ ++++                 
T Consensus       119 ~s~d~~v~~wd~~~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~~~~~~~~~~~~~-~l~s-----------------  175 (297)
T 2pm7_B          119 ASSDGKVSVVEFKENGTTSPIIIDA-----HAIGVNSASWAPATIEEDGEHNGTKESR-KFVT-----------------  175 (297)
T ss_dssp             EETTSEEEEEEBCSSSCBCCEEEEC-----CSSCEEEEEECCCC------------CC-EEEE-----------------
T ss_pred             EECCCcEEEEEecCCCceeeeeeec-----ccCccceEeecCCcccccccCCCCCCcc-eEEE-----------------
Confidence            5545557788876542 1  11111     1124567778776             34 3333                 


Q ss_pred             cCCCceEEEEeCCCCc----EE-EEeCCCCCCceEEEccCC--CEEEEEecCCCEEEEEEcCCCCCcce-eEee--cCCC
Q 018242          177 GDKTGRLMKYDPATKQ----VT-VLLGNLSFPNGVALSEDG--NYILLAETTSCRILRYWLKTSKAGTI-EIVA--QLPG  246 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~----~~-~~~~~~~~p~gia~~~d~--~~l~v~~~~~~~i~~~~~~~~~~~~~-~~~~--~~~~  246 (359)
                      ++..+.|..||..++.    .. .+..+......++|+|++  ..++++.+.++.|..|++........ ..+.  ..+.
T Consensus       176 gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~  255 (297)
T 2pm7_B          176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD  255 (297)
T ss_dssp             EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred             EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC
Confidence            1234567667655433    21 233334456899999985  34677888889999999865321111 1111  1222


Q ss_pred             CCCceEECCCCCEEEEEecCC
Q 018242          247 FPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       247 ~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ....++++++|++.++....+
T Consensus       256 ~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          256 VLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             CEEEEEECSSSCCEEEEETTS
T ss_pred             cEEEEEECCCCCEEEEEcCCC
Confidence            334578899998766555444

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.3e-05  Score=74.47  Aligned_cols=171  Identities=9%  Similarity=0.075  Sum_probs=99.9

Q ss_pred             EEEEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCC---cceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           25 VVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQ---RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      +..+..+--..-.++++.+ +|.+++++..++.|..||..+   +....                 ..... ........
T Consensus        55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~-~h~~~v~~  116 (437)
T 3gre_A           55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTY-DCSSTVTQ  116 (437)
T ss_dssp             EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEE-ECSSCEEE
T ss_pred             EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----------------eeeec-cCCCCEEE
Confidence            3344333335667999999 999888899999999999865   21000                 00011 12344678


Q ss_pred             EEEecCCCeEEEEeCCCcEEEEeCC---CCeEEEEee-c------CCCc-cccccceEE--EeCCCCEEEEEeCCCcccc
Q 018242          101 LCFNKTNGDLYIADAYFGLLKVGPE---GGLATAVAT-Q------SEGI-PFRFCNSLD--IDQSTGIIYFTDSSSQFQR  167 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~~i~~~~~~---~~~~~~~~~-~------~~~~-~~~~~~~l~--~d~~g~~l~v~d~~~~~~~  167 (359)
                      +++++++..++.+...+.|..++.+   +++...... .      .... ....+..+.  ..++++.+..+        
T Consensus       117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------  188 (437)
T 3gre_A          117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL--------  188 (437)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE--------
T ss_pred             EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE--------
Confidence            9999844445555555557777763   332221111 0      0000 011222333  44677733333        


Q ss_pred             ccceeeeeecCCCceEEEEeCCCCcEEEEe-C--CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          168 RNHISVILSGDKTGRLMKYDPATKQVTVLL-G--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       168 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~--~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                                ...+.|..||..+++..... .  .......++++|+++. +++...++.|..||+..
T Consensus       189 ----------~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          189 ----------TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV-LILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             ----------ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE-EEEEETTSCEEEEETTT
T ss_pred             ----------eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE-EEEEcCCCeEEEEEcCC
Confidence                      33568999999877654433 2  2345688999999885 55556778999999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.54  E-value=2.9e-05  Score=77.23  Aligned_cols=214  Identities=12%  Similarity=0.084  Sum_probs=120.0

Q ss_pred             ceEEEccCCCeeEEecC-CC----EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           37 ESLAFDALGEGPYTGVS-DG----RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~-~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      .+++++|||+.+..+.. .|    .|+.+|..+++.....                   ...  ....++++++++..|+
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-------------------~~~--~~~~~~~wspDg~~l~  186 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------------------LER--VKFSCMAWTHDGKGMF  186 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-------------------EEE--ECSCCEEECTTSSEEE
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-------------------ccC--cccceEEEEeCCCEEE
Confidence            36889999986654433 22    8999999988554321                   111  1134688999556677


Q ss_pred             EEeCCCc----------------EEEEeCCCCeEE--EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          112 IADAYFG----------------LLKVGPEGGLAT--AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       112 v~~~~~~----------------i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      ++.....                |++++..+++.+  .+... .. ......++.++|||++|+++....          
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-~~-~~~~~~~~~~SpDg~~l~~~~~~~----------  254 (710)
T 2xdw_A          187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PD-EPKWMGGAELSDDGRYVLLSIREG----------  254 (710)
T ss_dssp             EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TT-CTTCEEEEEECTTSCEEEEEEECS----------
T ss_pred             EEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc-CC-CCeEEEEEEEcCCCCEEEEEEEcc----------
Confidence            7654322                888888776521  22121 11 112345789999999777663210          


Q ss_pred             eeecCCCceEEEEeCCC------C--cEEEEeCCCCCCceEEEccCCCEEEEEecCC---CEEEEEEcCCCCCcceeEee
Q 018242          174 ILSGDKTGRLMKYDPAT------K--QVTVLLGNLSFPNGVALSEDGNYILLAETTS---CRILRYWLKTSKAGTIEIVA  242 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~------~--~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~---~~i~~~~~~~~~~~~~~~~~  242 (359)
                         ......|+.+|.++      +  ..+.+...... ....+++||+.+|+....+   ..|++++++.......+.+.
T Consensus       255 ---~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          255 ---CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ---SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ---CCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence               01135788898765      4  34444433222 2335788999888776543   47999998654221223332


Q ss_pred             c-CC-CCCCceEECCCCCEEEEEecCCCccccccccCCc-cceeeecCCcc
Q 018242          243 Q-LP-GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGNVLIKLPID  290 (359)
Q Consensus       243 ~-~~-~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~  290 (359)
                      . .. ....++.+.+++.++++....+.   ..+..++. +|+.+..++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~---~~l~~~~~~~g~~~~~l~~~  378 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVK---NTLQLHDLATGALLKIFPLE  378 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTE---EEEEEEETTTCCEEEEECCC
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCE---EEEEEEECCCCCEEEecCCC
Confidence            2 22 12345666556667766554432   11444444 56665555554

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.51  E-value=1.5e-05  Score=83.03  Aligned_cols=187  Identities=12%  Similarity=0.068  Sum_probs=114.1

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe-cCCCeEEEEe
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN-KTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~-~~~g~l~v~~  114 (359)
                      ...++++|||+.+..+ .++.|+.||..+.....+...  ...     ..   .........+..++++ |++..|.++.
T Consensus       247 ~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~--~~~-----~~---~~~~~~~~~v~~~~~S~pdG~~la~~~  315 (1045)
T 1k32_A          247 YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIG--DLE-----SP---EDRIISIPSKFAEDFSPLDGDLIAFVS  315 (1045)
T ss_dssp             SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCC--CCC-----BC---CSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred             cceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccC--ccc-----cc---ccccccccccceeeecCCCCCEEEEEE
Confidence            3467889999844444 578999999865543322100  000     00   0001112235689999 9444465555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE-EEeCCCCcE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM-KYDPATKQV  193 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~  193 (359)
                       ...|+.++..+++...+..    .....+..++++ +|++++++..                  ...++ .++.++++.
T Consensus       316 -~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~s-dg~~l~~~s~------------------~~~l~~~~d~~~~~~  371 (1045)
T 1k32_A          316 -RGQAFIQDVSGTYVLKVPE----PLRIRYVRRGGD-TKVAFIHGTR------------------EGDFLGIYDYRTGKA  371 (1045)
T ss_dssp             -TTEEEEECTTSSBEEECSC----CSCEEEEEECSS-SEEEEEEEET------------------TEEEEEEEETTTCCE
T ss_pred             -cCEEEEEcCCCCceEEccC----CCcceEEeeeEc-CCCeEEEEEC------------------CCceEEEEECCCCCc
Confidence             5568889988877554321    111145677888 8875665521                  34788 889887776


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEE
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv  261 (359)
                      ..+......+..++++|||+.++++. ..+.|+.|++...+   ..... ...+....++++++|+..+
T Consensus       372 ~~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~---~~~~~~~~~~~v~~~~~SpDG~~la  436 (1045)
T 1k32_A          372 EKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFIA  436 (1045)
T ss_dssp             EECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             eEecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCCc---eEEeccCCCCCccceEECCCCCeEE
Confidence            65543334567899999999776665 55799999986542   22222 2333347799999998544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.50  E-value=4.2e-05  Score=69.76  Aligned_cols=218  Identities=9%  Similarity=0.048  Sum_probs=121.1

Q ss_pred             CCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC--C-eE
Q 018242           35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN--G-DL  110 (359)
Q Consensus        35 ~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~--g-~l  110 (359)
                      ...++++.+ ++.+++++..++.|..||..+.+.....                     ........+.+.+..  + .+
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF---------------------NFEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEE---------------------ECSSCEEEEEECSSCSSCCEE
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceec---------------------cCCCceeeeEeecCCCCCcEE
Confidence            456888998 6776778888899999999876433211                     112234456666532  2 45


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          111 YIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +++...+.|..++..+++.......    ....+..++++|++++++++-                 ...+.|..||..+
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ll~~~-----------------~~dg~i~i~d~~~  218 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQG----HRQEILAVSWSPRYDYILATA-----------------SADSRVKLWDVRR  218 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECC----CCSCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTC
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecC----CCCcEEEEEECCCCCcEEEEE-----------------cCCCcEEEEECCC
Confidence            5555555688999887654322211    123567899999998545441                 2345688888764


Q ss_pred             Cc--EEEE---------------eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC----CCCC
Q 018242          191 KQ--VTVL---------------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP----GFPD  249 (359)
Q Consensus       191 ~~--~~~~---------------~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~p~  249 (359)
                      +.  ...+               .........++++|+++.++.+ ..++.|..|++...............    ....
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  297 (408)
T 4a11_B          219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV-GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF  297 (408)
T ss_dssp             SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC
T ss_pred             CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe-cCCCeEEEEECCCCccceecccccccccccccee
Confidence            42  1111               1112234688999999865554 56678999998654321110000001    1111


Q ss_pred             ceEECCCCCEEEEEecCCCccccccccCC-ccceeeecCCccceeeeeecccc
Q 018242          250 NIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKL  301 (359)
Q Consensus       250 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~  301 (359)
                      ....+..+.+.++..++.      +..++ ..++.+..+..+...+..+.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~------i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          298 TVSCGCSSEFVFVPYGST------IAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             EECCSSSSCEEEEEETTE------EEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             EEecCCCceEEEEecCCE------EEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence            122233445555554433      45554 35666666554444444444443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.50  E-value=7.3e-05  Score=67.18  Aligned_cols=184  Identities=8%  Similarity=-0.060  Sum_probs=112.4

Q ss_pred             cCCCeeEEecCCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEE
Q 018242           43 ALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLK  121 (359)
Q Consensus        43 ~~G~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~  121 (359)
                      +++.+++++..++.|..||..+++.. .+...                ........|. ++-...++.+.+-+....+..
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~----------------~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTP----------------NPRTGGEHPA-IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEEEE----------------CCCTTCCCCS-EEEECSTTEEEEEETTTEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEecC----------------CceeeeeCCc-eEEecCCCeEEEEEccCceEE
Confidence            46777889999999999999876432 22100                1111112233 333333777777766666777


Q ss_pred             EeCCCCeEEEEeecCCCccccccceEEEeC--CCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe--
Q 018242          122 VGPEGGLATAVATQSEGIPFRFCNSLDIDQ--STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL--  197 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~--~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--  197 (359)
                      ++..+++........   ....+..++++|  +++ ++++-                 +..+.|..||..+++.....  
T Consensus       109 ~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~-~l~s~-----------------s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A          109 LDSKTNKVLREIEVD---SANEIIYMYGHNEVNTE-YFIWA-----------------DNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EETTTCCEEEEEECC---CSSCEEEEECCC---CC-EEEEE-----------------ETTCCEEEEESSSSCEEEEECC
T ss_pred             eecCCcceeEEeecC---CCCCEEEEEcCCCCCCC-EEEEE-----------------eCCCcEEEEECCCCcEEEEEec
Confidence            888777632221111   112467889999  998 55541                 23567899998877764433  


Q ss_pred             CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEEecC
Q 018242          198 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       198 ~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      ........++++||++ ++++...++.|..||+....... ..+.. ..+....++++++|++.++...+
T Consensus       168 ~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             CSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEESS
T ss_pred             CCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEeCC
Confidence            2223467899999998 56666778899999987543210 12222 22334668999999877655544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.49  E-value=0.00033  Score=65.18  Aligned_cols=258  Identities=11%  Similarity=0.073  Sum_probs=138.2

Q ss_pred             EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcE
Q 018242           40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGL  119 (359)
Q Consensus        40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i  119 (359)
                      ++..+|+.++++..++.|..||..+++...                    .+.........+.++  ++.++.+...+.|
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--------------------~~~~h~~~v~~~~~~--~~~l~s~~~dg~i  181 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------------TLVGHTGGVWSSQMR--DNIIISGSTDRTL  181 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEE--------------------ECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEE--------------------EEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence            455568878899999999999998764322                    122222335567776  4566666666669


Q ss_pred             EEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE-eC
Q 018242          120 LKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL-LG  198 (359)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~  198 (359)
                      ..++.++++.......    ....+..+.++  ++.+..+                  +..+.|..+|..+++.... ..
T Consensus       182 ~vwd~~~~~~~~~~~~----h~~~v~~~~~~--~~~l~s~------------------s~dg~i~~wd~~~~~~~~~~~~  237 (445)
T 2ovr_B          182 KVWNAETGECIHTLYG----HTSTVRCMHLH--EKRVVSG------------------SRDATLRVWDIETGQCLHVLMG  237 (445)
T ss_dssp             EEEETTTTEEEEEECC----CSSCEEEEEEE--TTEEEEE------------------ETTSEEEEEESSSCCEEEEEEC
T ss_pred             EEEECCcCcEEEEECC----CCCcEEEEEec--CCEEEEE------------------eCCCEEEEEECCCCcEEEEEcC
Confidence            9999988865432221    11244566665  4424444                  2356799999887665433 33


Q ss_pred             CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCC
Q 018242          199 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP  278 (359)
Q Consensus       199 ~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  278 (359)
                      .......+++  +++. +++...++.|..|++....  ....+.........+.+  +|+..++....+.     +..++
T Consensus       238 ~~~~v~~~~~--~~~~-l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-----i~i~d  305 (445)
T 2ovr_B          238 HVAAVRCVQY--DGRR-VVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-----IRVWD  305 (445)
T ss_dssp             CSSCEEEEEE--CSSC-EEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE--CSSEEEEEETTSC-----EEEEE
T ss_pred             CcccEEEEEE--CCCE-EEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE--CCCEEEEEeCCCe-----EEEEE
Confidence            3334456666  5664 5555677899999975431  11112111122334555  5655444444443     55554


Q ss_pred             -ccceeeecCCccceeeeeeccc------ccCcceEEEEECC-CCCEEEEEEccCCceeeceEEEEEeCCEEEEecCCCC
Q 018242          279 -WIGNVLIKLPIDIVKIHSSLVK------LSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMP  350 (359)
Q Consensus       279 -~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~  350 (359)
                       ..++.+..+......+..+.+.      +..+ +.+..+|. +++.+..+..+.+ ....+..+..++..|..|+ .+.
T Consensus       306 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~-~dg  382 (445)
T 2ovr_B          306 VETGNCIHTLTGHQSLTSGMELKDNILVSGNAD-STVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSS-DDG  382 (445)
T ss_dssp             TTTCCEEEEECCCCSCEEEEEEETTEEEEEETT-SCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEE-TTS
T ss_pred             CCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCC-CeEEEEECCCCcEEEEEccCCC-CCCCEEEEEECCCEEEEEe-CCC
Confidence             3556555544332222222221      1122 33444553 4555555543211 1234455555555555555 467


Q ss_pred             eEEEEcCC
Q 018242          351 YAGLYNYS  358 (359)
Q Consensus       351 ~l~~~~~~  358 (359)
                      .|.++++.
T Consensus       383 ~v~iwd~~  390 (445)
T 2ovr_B          383 TVKLWDLK  390 (445)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEECC
Confidence            78877764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.48  E-value=0.00059  Score=63.66  Aligned_cols=190  Identities=12%  Similarity=0.062  Sum_probs=106.0

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec-CCCe-EE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK-TNGD-LY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~g~-l~  111 (359)
                      ....++++.+++ .++++..++.|..||..+++...                    .+.........+.+.+ .++. ++
T Consensus       163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--------------------~~~~h~~~v~~l~~~~~~~~~~l~  221 (464)
T 3v7d_B          163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH--------------------VFEGHNSTVRCLDIVEYKNIKYIV  221 (464)
T ss_dssp             SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE--------------------EECCCSSCEEEEEEEESSSCEEEE
T ss_pred             cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE--------------------EECCCCCccEEEEEecCCCCCEEE
Confidence            355688898888 58899999999999998764322                    1222233456677764 1444 44


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCC-----------------ccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          112 IADAYFGLLKVGPEGGLATAVATQSEG-----------------IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       112 v~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      .+...+.|..++..++...........                 .......-..++++++++..+               
T Consensus       222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---------------  286 (464)
T 3v7d_B          222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG---------------  286 (464)
T ss_dssp             EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE---------------
T ss_pred             EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE---------------
Confidence            455555688888876542111000000                 000011112345667734433               


Q ss_pred             eecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                         ...+.|..+|..+++..... ........++++++++.+ ++...++.|..|++...+  ....+.........+.+
T Consensus       287 ---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~  360 (464)
T 3v7d_B          287 ---SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDLENGE--LMYTLQGHTALVGLLRL  360 (464)
T ss_dssp             ---ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEE
T ss_pred             ---eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCc--EEEEEeCCCCcEEEEEE
Confidence               23567999998876654433 334456789999999854 555677899999976432  11222222222345666


Q ss_pred             CCCCCEEEEEecCC
Q 018242          254 SPRGGFWVGIHSRR  267 (359)
Q Consensus       254 d~~G~lwv~~~~~~  267 (359)
                      +  ++..++....+
T Consensus       361 ~--~~~l~s~s~dg  372 (464)
T 3v7d_B          361 S--DKFLVSAAADG  372 (464)
T ss_dssp             C--SSEEEEEETTS
T ss_pred             c--CCEEEEEeCCC
Confidence            5  45444444433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.47  E-value=6.5e-06  Score=78.64  Aligned_cols=149  Identities=12%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcce--------EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW--------LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      +-++++++|||++++++..+|.|..||..++..        ..+..                 ...........++++| 
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~-----------------~~~gh~~~V~sVawSP-  192 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL-----------------SDAGSKDWVTHIVWYE-  192 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC-----------------SCTTCCCCEEEEEEET-
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec-----------------ccccccccEEEEEEcC-
Confidence            356899999999999999999999999987632        22110                 0011123467899999 


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEE----EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLAT----AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR  182 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~  182 (359)
                      +| +.++...+.+..++.++++..    .+.. .   ....+.++++.  |++|-.+                  . .+.
T Consensus       193 dg-Laass~D~tVrlWd~~~~~~~~~~~tL~~-~---h~~~V~svaFs--g~~LASa------------------~-~~t  246 (588)
T 2j04_A          193 DV-LVAALSNNSVFSMTVSASSHQPVSRMIQN-A---SRRKITDLKIV--DYKVVLT------------------C-PGY  246 (588)
T ss_dssp             TE-EEEEETTCCEEEECCCSSSSCCCEEEEEC-C---CSSCCCCEEEE--TTEEEEE------------------C-SSE
T ss_pred             Cc-EEEEeCCCeEEEEECCCCccccceeeecc-c---ccCcEEEEEEE--CCEEEEE------------------e-CCe
Confidence            77 766666677999999877631    1211 1   12367888998  5624333                  1 358


Q ss_pred             EEEEeCCCCcEEEEe-CCCCCCceEEE--ccCCCEEEEEecCCCEEEEEE
Q 018242          183 LMKYDPATKQVTVLL-GNLSFPNGVAL--SEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       183 v~~~d~~~~~~~~~~-~~~~~p~gia~--~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      |..||.+++...... +......++++  +||++. +++...++. ..|.
T Consensus       247 IkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~-La~a~edG~-klw~  294 (588)
T 2j04_A          247 VHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI-LLMSNKTSY-KVLL  294 (588)
T ss_dssp             EEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE-EEECSSCEE-EEEE
T ss_pred             EEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE-EEEEcCCCC-EEEe
Confidence            999999887774544 55556789999  999864 444444555 4454

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.45  E-value=2e-05  Score=79.11  Aligned_cols=195  Identities=12%  Similarity=0.066  Sum_probs=116.4

Q ss_pred             CCceEEEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC--CCeE
Q 018242           35 GPESLAFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT--NGDL  110 (359)
Q Consensus        35 ~p~~i~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~--~g~l  110 (359)
                      .-.++++.++  |+.++++..++.|..||..+++.....                  ...........++++++  +..+
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~------------------~~~~h~~~V~~v~~sp~~~~~~l  116 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA------------------VHAVHSASVNSVQWAPHEYGPLL  116 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE------------------EECCCSSCEEEEEECCGGGCSEE
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc------------------cccCCCCCeEEEEECCCCCCCEE
Confidence            3458889887  888889999999999999876433322                  22223344678999985  3445


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-------------CCCEEEEEeCCCccccccceeeeeec
Q 018242          111 YIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-------------STGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-------------~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      +++...+.|..+|..++........ .. ....+..+.++|             +++.+..+                  
T Consensus       117 ~sgs~dg~I~vwdl~~~~~~~~~~~-~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg------------------  176 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENGTTSPIII-DA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTG------------------  176 (753)
T ss_dssp             EEEETTSEEEEEECCSSSCCCCEEE-EC-CSSCEEEEEECCCC---------CGGGCCEEEE------------------
T ss_pred             EEEeCCCcEEEEEeecCCCcceeEe-ec-CCCceEEEEecCcccccccccccCCCCCEEEEE------------------
Confidence            5555555688888876521111000 00 123566788888             46634443                  


Q ss_pred             CCCceEEEEeCCCCc----EE-EEeCCCCCCceEEEccC---CCEEEEEecCCCEEEEEEcCCCCCcceeEeec---CCC
Q 018242          178 DKTGRLMKYDPATKQ----VT-VLLGNLSFPNGVALSED---GNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPG  246 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~----~~-~~~~~~~~p~gia~~~d---~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~  246 (359)
                      ...+.|..||..++.    .. .+..+......++++|+   ++ .+++...++.|..|++.............   ..+
T Consensus       177 s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  255 (753)
T 3jro_A          177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD  255 (753)
T ss_dssp             ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS
T ss_pred             ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC
Confidence            224567777765442    11 12233445678999999   65 56666677899999987542211111111   223


Q ss_pred             CCCceEECCCCCEEEEEecCCC
Q 018242          247 FPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       247 ~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      ....++++++|++.++....+.
T Consensus       256 ~v~~l~~spdg~~l~s~s~Dg~  277 (753)
T 3jro_A          256 VLWRASWSLSGNVLALSGGDNK  277 (753)
T ss_dssp             CCCCEEECTTTCCEEEECSSSC
T ss_pred             ceEEEEEcCCCCEEEEEcCCCE
Confidence            4567899999976655444443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.44  E-value=1.8e-05  Score=77.80  Aligned_cols=188  Identities=12%  Similarity=0.032  Sum_probs=107.3

Q ss_pred             cCCCe-eE-EecCCCEEEEEEcC--C-cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-
Q 018242           43 ALGEG-PY-TGVSDGRIIKWHQD--Q-RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-  116 (359)
Q Consensus        43 ~~G~~-l~-~~~~~~~i~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-  116 (359)
                      |||+. ++ +...+..|+.++.+  + ++...+...                ...........+++++++..|+++... 
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~----------------~~~~~~~~~~~~~~spDg~~l~~~~~~~  151 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPV----------------SAVGGGLRWADPVLLPERGEVWCMAEEF  151 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCC----------------CCSTTCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCC----------------ccCCCCccccCcEECCCCCEEEEEEecc
Confidence            88885 44 44446789999887  3 433322100                000012235678999955566665432 


Q ss_pred             ---------CcEEEEeCCC------CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC-CC
Q 018242          117 ---------FGLLKVGPEG------GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD-KT  180 (359)
Q Consensus       117 ---------~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~-~~  180 (359)
                               ..|++++.++      ++.+.+..  .  .......++++|||++|+++......           .. ..
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~--~~~~~~~~~~SpDG~~la~~~~~~~~-----------~~~~~  216 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD--D--AHRFVTGPRLSPDGRQAVWLAWDHPR-----------MPWEG  216 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC--S--CSSEECCCEECTTSSEEEEEEECTTC-----------CTTTC
T ss_pred             cCCCCCCceeEEEEEECCCCccccCCceeEEEe--c--CCCcccCceECCCCCEEEEEECCCCC-----------CCCCC
Confidence                     2588999988      66554430  1  11345678999999977666321100           00 12


Q ss_pred             ceEEEEeCC-CC---cEEEEeCC-CCCCceEEEccCCCEEEEEecCCC--EEEEEEcCCCCCcceeEeecCC-C------
Q 018242          181 GRLMKYDPA-TK---QVTVLLGN-LSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLP-G------  246 (359)
Q Consensus       181 g~v~~~d~~-~~---~~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~--~i~~~~~~~~~~~~~~~~~~~~-~------  246 (359)
                      ..|+.+|.+ ++   +.+.+... ...+..++++|||+ +|++...++  .|+++++++.+   .+.+.... .      
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w  292 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLW  292 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCC
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccc
Confidence            468999887 46   44444332 34567889999999 566555555  78888864432   11111100 0      


Q ss_pred             C--CCceEECCCCCEEEEEec
Q 018242          247 F--PDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       247 ~--p~~i~~d~~G~lwv~~~~  265 (359)
                      .  ...+++.++|++++....
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~  313 (662)
T 3azo_A          293 TPGMRWFAPLANGLIAVVHGK  313 (662)
T ss_dssp             STTCCSEEECTTSCEEEEEBS
T ss_pred             cccCceEeEeCCCEEEEEEEc
Confidence            1  245777778887776554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.44  E-value=5.3e-06  Score=80.48  Aligned_cols=175  Identities=17%  Similarity=0.139  Sum_probs=108.4

Q ss_pred             CCceEEEccCCC-eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-
Q 018242           35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-  112 (359)
Q Consensus        35 ~p~~i~~~~~G~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-  112 (359)
                      .....++.++|+ +++++...+.+..||.++++.+.+..                    .. .  ..++++| +|+.++ 
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--------------------~~-~--~~~~~sp-DG~~la~  166 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--------------------LP-G--FGFVSDI-RGDLIAG  166 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--------------------ES-S--CEEEEEE-ETTEEEE
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--------------------CC-C--ceEEECC-CCCEEEE
Confidence            344567777775 35666666667789988875544321                    11 1  5788999 555444 


Q ss_pred             EeCC----CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          113 ADAY----FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       113 ~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +...    ..|+++|.++++.+.+...     ......++++|||++|+.++.                .....|+++|.
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l~~~~~----------------~~~~~i~~~d~  225 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVTAGLET----------------AREARLVTVDP  225 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEEEEEEC----------------SSCEEEEEECT
T ss_pred             EEEcCCCCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEEEEccC----------------CCeeEEEEEcC
Confidence            3322    2489999988887655321     124578899999996664422                11237999999


Q ss_pred             CCCcEEEEeCC-CCCCceEE--------EccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCE
Q 018242          189 ATKQVTVLLGN-LSFPNGVA--------LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF  259 (359)
Q Consensus       189 ~~~~~~~~~~~-~~~p~gia--------~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l  259 (359)
                      ++++.+ .... ...+..++        ++||| .++++...++.+..|++ +.    ..  ....+....++++ +|++
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~----~~--~~~~~~v~~~~~s-dg~~  295 (582)
T 3o4h_A          226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GE----RV--EAPQGNHGRVVLW-RGKL  295 (582)
T ss_dssp             TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TE----EE--CCCSSEEEEEEEE-TTEE
T ss_pred             CCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CC----ee--ccCCCceEEEEec-CCEE
Confidence            988877 3322 22234455        99999 57777777888999987 21    11  1122223457787 8876


Q ss_pred             EEEEe
Q 018242          260 WVGIH  264 (359)
Q Consensus       260 wv~~~  264 (359)
                      ++...
T Consensus       296 l~~~s  300 (582)
T 3o4h_A          296 VTSHT  300 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            65433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.44  E-value=4.6e-05  Score=67.48  Aligned_cols=163  Identities=9%  Similarity=0.005  Sum_probs=98.7

Q ss_pred             CCCceEEEcc--CCCeeEEecCCCEEEEEEcCCcce-------EEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           34 IGPESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRW-------LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        34 ~~p~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      ....++++.+  ++++++++..++.|..||..+++.       ....                  .+.........++++
T Consensus        58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~~~~~v~~~~~~  119 (351)
T 3f3f_A           58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC------------------TLNDSKGSLYSVKFA  119 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE------------------EECCCSSCEEEEEEC
T ss_pred             CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee------------------eecccCCceeEEEEc
Confidence            3456889988  588788889999999999876521       1110                  222233446789999


Q ss_pred             cC--CCeEEEEeCCCcEEEEeCCCCeEE------EEeec---CCCccccccceEEEeCC---CCEEEEEeCCCccccccc
Q 018242          105 KT--NGDLYIADAYFGLLKVGPEGGLAT------AVATQ---SEGIPFRFCNSLDIDQS---TGIIYFTDSSSQFQRRNH  170 (359)
Q Consensus       105 ~~--~g~l~v~~~~~~i~~~~~~~~~~~------~~~~~---~~~~~~~~~~~l~~d~~---g~~l~v~d~~~~~~~~~~  170 (359)
                      ++  +..++.+...+.|..+|..+++..      .....   ........+..+.++|+   ++.+.++.          
T Consensus       120 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~----------  189 (351)
T 3f3f_A          120 PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA----------  189 (351)
T ss_dssp             CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE----------
T ss_pred             CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec----------
Confidence            85  344555555556888887765421      00000   11112345677888886   77344442          


Q ss_pred             eeeeeecCCCceEEEEeCCCCcEEEE---eCCCCCCceEEEccCCC---EEEEEecCCCEEEEEEcCC
Q 018242          171 ISVILSGDKTGRLMKYDPATKQVTVL---LGNLSFPNGVALSEDGN---YILLAETTSCRILRYWLKT  232 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~~~~~~~---~~~~~~p~gia~~~d~~---~l~v~~~~~~~i~~~~~~~  232 (359)
                              ..+.+..++...+....+   .........++++|++.   .++++...++.|..|++..
T Consensus       190 --------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          190 --------LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             --------TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             --------CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence                    234555555555554322   22334467899999972   3677777888999999864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.42  E-value=6.5e-06  Score=75.13  Aligned_cols=198  Identities=12%  Similarity=0.015  Sum_probs=104.6

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE-----EEEecCCCeEEE
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG-----LCFNKTNGDLYI  112 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-----i~~~~~~g~l~v  112 (359)
                      .+.++|||+.++....++.|+.+|..+++.+.+...+...    .|.+.. +.+... .....     +.+++++..+.+
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~----~~~g~~-l~~~~~-~~~~~~~~~~~~~spdg~~~~~  158 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW----KGYGTW-VANSDC-TKLVGIEILKRDWQPLTSWEKF  158 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE----EEEEEE-EECTTS-SEEEEEEEEGGGCCCCCSHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc----CCCCCE-EEeccC-CccccccccccccCCCCcceee
Confidence            3789999997766666678999999887655443211000    000000 000000 00000     112342222222


Q ss_pred             Ee-----CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeC-CCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          113 AD-----AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQ-STGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       113 ~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~-~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      ..     ....|+.++.++++.+.+...     ...+..+.++| +|++|++......            ......|+.+
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~------------~~~~~~l~~~  221 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPH------------DLVDARMWLV  221 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCS------------SSCSCCCEEE
T ss_pred             eeeccCCCcceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCC------------CCCCceEEEE
Confidence            21     223588899888876655421     12456788999 7775655522100            0112469999


Q ss_pred             eCCCCcEEEEeCC--CCCCceEEEccCCCEEEEEecC--C--CEEEEEEcCCCCCcceeEeecCCCCCCceEECC-CCCE
Q 018242          187 DPATKQVTVLLGN--LSFPNGVALSEDGNYILLAETT--S--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-RGGF  259 (359)
Q Consensus       187 d~~~~~~~~~~~~--~~~p~gia~~~d~~~l~v~~~~--~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l  259 (359)
                      +.+++..+.+...  ...+..++++|||+.+++....  .  ..|++|++....   ...+...++. . +.+++ +|++
T Consensus       222 d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~-~-~~~s~~dg~~  296 (396)
T 3c5m_A          222 NEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE---NEEVMVMPPC-S-HLMSNFDGSL  296 (396)
T ss_dssp             ETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC---EEEEEECCSE-E-EEEECSSSSE
T ss_pred             ECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC---eEEeeeCCCC-C-CCccCCCCce
Confidence            9877665554332  1234567999999976665432  2  349999875432   2222223332 1 77788 8986


Q ss_pred             EEEE
Q 018242          260 WVGI  263 (359)
Q Consensus       260 wv~~  263 (359)
                      ++..
T Consensus       297 l~~~  300 (396)
T 3c5m_A          297 MVGD  300 (396)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=98.40  E-value=0.00021  Score=66.09  Aligned_cols=203  Identities=12%  Similarity=0.026  Sum_probs=114.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.+++++++|+.+.++..++.|..||..+++...                    .+.........+..+  ...+..+..
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~--------------------~~~~h~~~v~~~s~~--~~~l~sgs~  207 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--------------------NMTSHSARVGSLSWN--SYILSSGSR  207 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------------------EECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE--------------------EEeCCCCceEEEeeC--CCEEEEEeC
Confidence            3589999999988899999999999998764322                    111122223333333  334444454


Q ss_pred             CCcEEEEeCCCCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          116 YFGLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       116 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+..++......  ..+..     ....+..+.+.++|+ ..++.                 ...+.+..++..+++.
T Consensus       208 d~~i~~~d~~~~~~~~~~~~~-----h~~~~~~~~~~~~g~-~l~s~-----------------~~D~~v~i~~~~~~~~  264 (420)
T 4gga_A          208 SGHIHHHDVRVAEHHVATLSG-----HSQEVCGLRWAPDGR-HLASG-----------------GNDNLVNVWPSAPGEG  264 (420)
T ss_dssp             TSEEEEEETTSSSCEEEEEEC-----CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEESSCCSS
T ss_pred             CCceeEeeecccceeeEEecc-----cccceeeeeecCCCC-eeeee-----------------eccccceEEeeccccc
Confidence            44577777654332  22211     123456788999999 44441                 2245677777665432


Q ss_pred             -----EEEeCCCCCCceEEEccCCCEEEEE--ecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEec-
Q 018242          194 -----TVLLGNLSFPNGVALSEDGNYILLA--ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS-  265 (359)
Q Consensus       194 -----~~~~~~~~~p~gia~~~d~~~l~v~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~-  265 (359)
                           ............++++|++..++.+  .+.++.|..||+.....  ...+ ........+.+.++++..++..+ 
T Consensus       265 ~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~--~~~~-~~~~~v~~~~~~~~~~~lv~~sg~  341 (420)
T 4gga_A          265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAV-DAHSQVCSILWSPHYKELISGHGF  341 (420)
T ss_dssp             CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE--EEEE-ECSSCEEEEEEETTTTEEEEEECT
T ss_pred             cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc--ceee-ccccceeeeeecCCCCeEEEEEec
Confidence                 1222233345678899876655544  34678999999765321  1111 22233455777888875554433 


Q ss_pred             CCCccccccccCC-ccceeeecCCcc
Q 018242          266 RRKGISKLVLSFP-WIGNVLIKLPID  290 (359)
Q Consensus       266 ~~~~~~~~~~~~~-~~g~~~~~~~~~  290 (359)
                      ....    +.+++ ++++.+..+..+
T Consensus       342 ~d~~----I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          342 AQNQ----LVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             TTCC----EEEEETTTCCEEEEECCC
T ss_pred             CCCE----EEEEECCCCcEEEEEcCC
Confidence            2221    44444 356666655443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=98.37  E-value=2.9e-05  Score=69.12  Aligned_cols=194  Identities=9%  Similarity=0.097  Sum_probs=109.1

Q ss_pred             CceEEEcc--CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-CeEEE
Q 018242           36 PESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GDLYI  112 (359)
Q Consensus        36 p~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~l~v  112 (359)
                      -.++++.+  +|+++.++..++.|..||..++++....                  .+.........+++++++ +.+++
T Consensus        60 V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~------------------~~~~h~~~V~~v~~~p~~~g~~la  121 (316)
T 3bg1_A           60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH------------------EHAGHDSSVNSVCWAPHDYGLILA  121 (316)
T ss_dssp             EEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE------------------EECCCSSCCCEEEECCTTTCSCEE
T ss_pred             EEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE------------------EccCCCCceEEEEECCCCCCcEEE
Confidence            34778865  4777888899999999998875322211                  122222346789999842 55555


Q ss_pred             E-eCCCcEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCC-----------------CEEEEEeCCCccccccceee
Q 018242          113 A-DAYFGLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQST-----------------GIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       113 ~-~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g-----------------~~l~v~d~~~~~~~~~~~~~  173 (359)
                      + ...+.|..++..++. .... ..... ....+..+.++|++                 + ++++              
T Consensus       122 sgs~D~~i~lwd~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s--------------  184 (316)
T 3bg1_A          122 CGSSDGAISLLTYTGEGQWEVK-KINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFAS--------------  184 (316)
T ss_dssp             EECSSSCEEEEEECSSSCEEEC-CBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCC-BEEC--------------
T ss_pred             EEcCCCCEEEEecCCCCCccee-eeecc-ccCCcceEEEccccCCccccccccccCccccc-eEEE--------------
Confidence            4 434457777776542 2111 11111 11245567777762                 3 2222              


Q ss_pred             eeecCCCceEEEEeCCCC-cEEE---EeCCCCCCceEEEccCC---CEEEEEecCCCEEEEEEcCCCCCc--ceeEeecC
Q 018242          174 ILSGDKTGRLMKYDPATK-QVTV---LLGNLSFPNGVALSEDG---NYILLAETTSCRILRYWLKTSKAG--TIEIVAQL  244 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~-~~~~---~~~~~~~p~gia~~~d~---~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~  244 (359)
                         ++..+.|..+|.+++ ..+.   +..+......++++|++   ..++++.+.++.|..|++......  ....+...
T Consensus       185 ---gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~  261 (316)
T 3bg1_A          185 ---GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF  261 (316)
T ss_dssp             ---CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred             ---ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence               233456666665532 2222   22233446789999986   236777788899999998652111  11122222


Q ss_pred             CCCCCceEECCCCCEEEEEecCC
Q 018242          245 PGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       245 ~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ......+++.++|++.++....+
T Consensus       262 ~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          262 NDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             SSCEEEEEECTTTCCEEEEESSS
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCC
Confidence            33345688999998666554443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.35  E-value=0.0018  Score=60.17  Aligned_cols=262  Identities=10%  Similarity=0.058  Sum_probs=136.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      ..++.++  +.+++++..++.|..||..+++...                    .+.........+.++  ++.++.+..
T Consensus       162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~--------------------~~~~h~~~v~~~~~~--~~~l~s~s~  217 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGSTDRTLKVWNAETGECIH--------------------TLYGHTSTVRCMHLH--EKRVVSGSR  217 (445)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE--------------------EECCCSSCEEEEEEE--TTEEEEEET
T ss_pred             EEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE--------------------EECCCCCcEEEEEec--CCEEEEEeC
Confidence            3456665  5568889999999999998764322                    112222334566665  556777776


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.|..+|..+++.......    ....+..+.+  +|+++..+                  ...+.|..+|..+++...
T Consensus       218 dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~--~~~~l~~~------------------~~dg~i~iwd~~~~~~~~  273 (445)
T 2ovr_B          218 DATLRVWDIETGQCLHVLMG----HVAAVRCVQY--DGRRVVSG------------------AYDFMVKVWDPETETCLH  273 (445)
T ss_dssp             TSEEEEEESSSCCEEEEEEC----CSSCEEEEEE--CSSCEEEE------------------ETTSCEEEEEGGGTEEEE
T ss_pred             CCEEEEEECCCCcEEEEEcC----CcccEEEEEE--CCCEEEEE------------------cCCCEEEEEECCCCcEeE
Confidence            66688999887765432221    1123445665  56635544                  234678889987665543


Q ss_pred             EeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCcccccc
Q 018242          196 LLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV  274 (359)
Q Consensus       196 ~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~  274 (359)
                      ... .......+++  +++. +++...++.|..|++...+.  ...+.........+.+  ++++.++....+.     +
T Consensus       274 ~~~~~~~~v~~~~~--~~~~-l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-----i  341 (445)
T 2ovr_B          274 TLQGHTNRVYSLQF--DGIH-VVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMEL--KDNILVSGNADST-----V  341 (445)
T ss_dssp             EECCCSSCEEEEEE--CSSE-EEEEETTSCEEEEETTTCCE--EEEECCCCSCEEEEEE--ETTEEEEEETTSC-----E
T ss_pred             EecCCCCceEEEEE--CCCE-EEEEeCCCeEEEEECCCCCE--EEEEcCCcccEEEEEE--eCCEEEEEeCCCe-----E
Confidence            332 2233445555  6665 45555678999999865421  1122211222233444  4555554444443     5


Q ss_pred             ccCC-ccceeeecCCc---cceeeeeeccc------ccCcceEEEEEC-CCCCEEEEEEcc-CCceeeceEEEEEe-CCE
Q 018242          275 LSFP-WIGNVLIKLPI---DIVKIHSSLVK------LSGNGGMAMRIS-EQGNVLEILEEI-GRKMWRSISEVEEK-DGN  341 (359)
Q Consensus       275 ~~~~-~~g~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~-~~g~~~~~~~~~-~g~~~~~~~~~~~~-~g~  341 (359)
                      ..++ ..++.+..+..   ....+.++.+.      +..+ +.+..++ .+++.+..+... .+.....+..+... ++.
T Consensus       342 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD-GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             EEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT-SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred             EEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC-CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence            5554 35665555443   22233333332      1222 3444455 335555555321 11122334555554 444


Q ss_pred             EEEecCCCC----eEEEEcCC
Q 018242          342 LWIGSVNMP----YAGLYNYS  358 (359)
Q Consensus       342 l~ig~~~~~----~l~~~~~~  358 (359)
                      +.+.+-.+.    +|.+++.+
T Consensus       421 ~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          421 VCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEEECSSSSSCCEEEEEECC
T ss_pred             EEEEcccCCCCccEEEEEECC
Confidence            433333233    47777765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.30  E-value=5.8e-05  Score=74.92  Aligned_cols=211  Identities=9%  Similarity=0.008  Sum_probs=113.6

Q ss_pred             ceEEEccCCCeeEEec-C----CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCc-ceEEEEecCCCeE
Q 018242           37 ESLAFDALGEGPYTGV-S----DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGR-PLGLCFNKTNGDL  110 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~-~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gi~~~~~~g~l  110 (359)
                      .+++++|||+.+..+. .    ...|+.+|..+++...                     ....... ..++++++++..|
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------------------~~~~~~~~~~~~~wspDg~~l  182 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------------------VDVIEGGKYATPKWTPDSKGF  182 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------------------SCCBSCCTTCCCEECTTSSEE
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---------------------CcccCcccccceEEecCCCEE
Confidence            4678999999554332 2    2579999998874320                     0011111 1468899955556


Q ss_pred             EEEeCCCc-------------EEEEeCCCCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          111 YIADAYFG-------------LLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       111 ~v~~~~~~-------------i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      +.+.....             |++++..+++.  +.+.. ... ......++.+++||++|.++...             
T Consensus       183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~-~~~~~~~~~~SpDG~~l~~~~~~-------------  247 (695)
T 2bkl_A          183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTG-DPTTFLQSDLSRDGKYLFVYILR-------------  247 (695)
T ss_dssp             EEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCC-CTTCEEEEEECTTSCCEEEEEEE-------------
T ss_pred             EEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCC-CCEEEEEEEECCCCCEEEEEEeC-------------
Confidence            66544222             89999887652  12222 111 11244578999999977666211             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEec---CCCEEEEEEcCCCCCcceeEeec-C-CCCCCc
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---TSCRILRYWLKTSKAGTIEIVAQ-L-PGFPDN  250 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~---~~~~i~~~~~~~~~~~~~~~~~~-~-~~~p~~  250 (359)
                       ......|+.++..++..+.+............ ++++ +|+...   .+..|++++++.......+.+.. . .....+
T Consensus       248 -~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          248 -GWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS  324 (695)
T ss_dssp             -TTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred             -CCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence             00234688888766666655443333334433 6787 777654   35789999976542211222222 1 112234


Q ss_pred             eEECCCCCEEEEEecCCCccccccccCCccceeeecCCcc
Q 018242          251 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID  290 (359)
Q Consensus       251 i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  290 (359)
                      ++++ ++.++++....+.   ..+..++..|+....+..+
T Consensus       325 ~~~~-~~~lv~~~~~dg~---~~l~~~~~~g~~~~~l~~~  360 (695)
T 2bkl_A          325 VSIV-GGHLSLEYLKDAT---SEVRVATLKGKPVRTVQLP  360 (695)
T ss_dssp             EEEE-TTEEEEEEEETTE---EEEEEEETTCCEEEECCCS
T ss_pred             EEEE-CCEEEEEEEECCE---EEEEEEeCCCCeeEEecCC
Confidence            5665 5666665554332   1133344445555555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=98.30  E-value=9.2e-05  Score=65.08  Aligned_cols=215  Identities=12%  Similarity=0.038  Sum_probs=113.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccc---------------------cccccccc
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEY---------------------DHAAKEHI   94 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~   94 (359)
                      -.++++.++|+.+.++..++.|..||..+++.............+..+.+.                     .+......
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~  149 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH  149 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence            358999999998889999999999999876533221111000000000000                     00000011


Q ss_pred             CCcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           95 CGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        95 ~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ......+.+.+.+..++.+...+.|..+|..+++...............+..+...+++..+....              
T Consensus       150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------------  215 (318)
T 4ggc_A          150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG--------------  215 (318)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE--------------
T ss_pred             cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE--------------
Confidence            122334556663333444444445777777654321100000000112345566666554243321              


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEe-cCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE-TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                       .+...+.|..++..................+++.++++.++.+. ..++.|..|++...+  ....+....+....+++
T Consensus       216 -~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~  292 (318)
T 4ggc_A          216 -GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTM  292 (318)
T ss_dssp             -ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEEE
T ss_pred             -ecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEE
Confidence             12334568888887666555444445567788889888766653 467889999976432  12222222233456899


Q ss_pred             CCCCCEEEEEecCC
Q 018242          254 SPRGGFWVGIHSRR  267 (359)
Q Consensus       254 d~~G~lwv~~~~~~  267 (359)
                      +++|++.++....+
T Consensus       293 spdg~~l~S~s~D~  306 (318)
T 4ggc_A          293 SPDGATVASAAADE  306 (318)
T ss_dssp             CTTSSCEEEEETTT
T ss_pred             cCCCCEEEEEecCC
Confidence            99998666554443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.30  E-value=9.3e-05  Score=66.29  Aligned_cols=206  Identities=12%  Similarity=0.027  Sum_probs=111.6

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE--ecCCCe-E
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF--NKTNGD-L  110 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~--~~~~g~-l  110 (359)
                      ....+++++++|+.++++..++.|..||..+++...+.                     ........+.+  ++ +++ +
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------------------~~~~~v~~~~~~~~~-~~~~l  144 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA---------------------QHDAPVKTIHWIKAP-NYSCV  144 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---------------------ECSSCEEEEEEEECS-SCEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec---------------------cccCceEEEEEEeCC-CCCEE
Confidence            45668999999998888999999999999887544321                     12234567888  67 555 4


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccc----------cc---------
Q 018242          111 YIADAYFGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQ----------RR---------  168 (359)
Q Consensus       111 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~----------~~---------  168 (359)
                      +.+...+.|..+|..+++..........   .......-+....++. +.+-+....-.          ..         
T Consensus       145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (368)
T 3mmy_A          145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERG-LIVYQLENQPSEFRRIESPLKHQHRCVAIFKD  223 (368)
T ss_dssp             EEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGC-EEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred             EEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCc-EEEEEeccccchhhhccccccCCCceEEEccc
Confidence            4445455588888876653222111100   0001111222333333 33332211000          00         


Q ss_pred             --cceeeeeecCCCceEEEEeCCCCc----EEEEeCCCC------------CCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          169 --NHISVILSGDKTGRLMKYDPATKQ----VTVLLGNLS------------FPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       169 --~~~~~~~~~~~~g~v~~~d~~~~~----~~~~~~~~~------------~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                        .....+..+...+.|..++.+...    ...+.....            ....++++|+++.+ ++...++.|..|++
T Consensus       224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDK  302 (368)
T ss_dssp             TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEET
T ss_pred             CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEEC
Confidence              000013334445667777766531    112211111            36789999999855 44556789999997


Q ss_pred             CCCCCcceeEeecCCCCCCceEECCCCCEEEEEec
Q 018242          231 KTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       231 ~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                      ....  ....+.........++++++|++.++...
T Consensus       303 ~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          303 DART--KLKTSEQLDQPISACCFNHNGNIFAYASS  335 (368)
T ss_dssp             TTTE--EEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred             CCCc--EEEEecCCCCCceEEEECCCCCeEEEEec
Confidence            6431  11222222233567899999986665544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.29  E-value=0.00064  Score=60.64  Aligned_cols=152  Identities=13%  Similarity=0.089  Sum_probs=85.0

Q ss_pred             CcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      .....+.+++ + .|..+...+.|..++.+++..+.............+..++++|+|+ +.++-               
T Consensus        15 ~~v~~~~~s~-~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~---------------   76 (330)
T 2hes_X           15 EKIWSFDFSQ-G-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAG---------------   76 (330)
T ss_dssp             SCEEEEEEET-T-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEE---------------
T ss_pred             CceeeeccCC-C-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEE---------------
Confidence            3456788887 4 5555554556888888765322221110111223577899999999 55541               


Q ss_pred             ecCCCceEEEEeCCCC-------cE-EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC-CCcc-eeEeecCC
Q 018242          176 SGDKTGRLMKYDPATK-------QV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGT-IEIVAQLP  245 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~-------~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~-~~~~-~~~~~~~~  245 (359)
                        +..+.|..|+.+..       .. ..+..+......++|+|++++ +++...++.|..|++... .... ...+....
T Consensus        77 --s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~-las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           77 --SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             --ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE-EEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             --eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence              23456777776421       11 122233345678999999984 556667889999998432 1111 11222222


Q ss_pred             CCCCceEECCCCCEEEEEecCCC
Q 018242          246 GFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       246 ~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .....+++.++|++.++....+.
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~  176 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDT  176 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSC
T ss_pred             CceEEEEECCCCCEEEEEcCCCe
Confidence            33456888999987776655443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.29  E-value=0.00035  Score=69.81  Aligned_cols=176  Identities=7%  Similarity=-0.015  Sum_probs=96.4

Q ss_pred             ceEEEccCCCeeEEecCC---------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242           37 ESLAFDALGEGPYTGVSD---------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN  107 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (359)
                      .++.++|||+.+..+..+         +.++.||..+++.+.+                     ..........+++|++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l---------------------~~~~~~~~~~~~SPdG  123 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE---------------------ERIPNNTQWVTWSPVG  123 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCCCTTEEEEEECSST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc---------------------ccCCCcceeeEECCCC
Confidence            347889999966666553         5678999988743221                     1112234567899955


Q ss_pred             CeEEEEeCCCcEEEEeCCCCeEEEEeecCCCc-c-------------ccccceEEEeCCCCEEEEEeC--CC--cccc--
Q 018242          108 GDLYIADAYFGLLKVGPEGGLATAVATQSEGI-P-------------FRFCNSLDIDQSTGIIYFTDS--SS--QFQR--  167 (359)
Q Consensus       108 g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~l~~d~~g~~l~v~d~--~~--~~~~--  167 (359)
                      ..|..+ ..+.|+.++..+++.+.+....... .             +.....+.++|||++|.++..  +.  .|..  
T Consensus       124 ~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~  202 (740)
T 4a5s_A          124 HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF  202 (740)
T ss_dssp             TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred             CEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence            555554 3457999998887765442211000 0             122245899999996665521  10  0000  


Q ss_pred             --c---cc--eeee-e--ec--CCCceEEEEeCCC---C---cEEEEeC------CCCCCceEEEccCCCEEE-EEecCC
Q 018242          168 --R---NH--ISVI-L--SG--DKTGRLMKYDPAT---K---QVTVLLG------NLSFPNGVALSEDGNYIL-LAETTS  222 (359)
Q Consensus       168 --~---~~--~~~~-~--~~--~~~g~v~~~d~~~---~---~~~~~~~------~~~~p~gia~~~d~~~l~-v~~~~~  222 (359)
                        .   .+  ...+ +  .+  .....|+.+|.++   +   +...+..      .......++++|||+.++ +.....
T Consensus       203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~  282 (740)
T 4a5s_A          203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ  282 (740)
T ss_dssp             CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred             ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence              0   00  0000 0  01  1123688899987   6   4444432      122235678999998433 333332


Q ss_pred             --CEEEEEEcCCCC
Q 018242          223 --CRILRYWLKTSK  234 (359)
Q Consensus       223 --~~i~~~~~~~~~  234 (359)
                        ..|+.+++++.+
T Consensus       283 ~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          283 NYSVMDICDYDESS  296 (740)
T ss_dssp             TEEEEEEEEEETTT
T ss_pred             CEEEEEEEECCCCc
Confidence              368888886553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.29  E-value=6.1e-05  Score=67.43  Aligned_cols=198  Identities=10%  Similarity=0.121  Sum_probs=105.0

Q ss_pred             cCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC---CC----eEEEEeC
Q 018242           43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT---NG----DLYIADA  115 (359)
Q Consensus        43 ~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~---~g----~l~v~~~  115 (359)
                      |...++..+...++|+.||+++.....+.                       .++++++.+-+.   +|    .+++++.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~-----------------------~g~~nnVD~r~~~~l~g~~~dla~as~R   94 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGKMLHSYN-----------------------TGKLNNVDIRYDFPLNGKKVDIAAASNR   94 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSCEEEEEC-----------------------CSCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCccEEEEEcCCCCEEEEcCCCcEEEEcc-----------------------CCCcccEEEecccccCCceEeEEEEeCC
Confidence            34453333445579999999665333321                       133444433220   11    2455555


Q ss_pred             C---CcEE--EEeCCCCeEEEEeecC-C-CccccccceEEE--eCC-CC-EEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          116 Y---FGLL--KVGPEGGLATAVATQS-E-GIPFRFCNSLDI--DQS-TG-IIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       116 ~---~~i~--~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~--d~~-g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      .   +.|.  .+|+++++++.+.... + ......|.+++.  +++ |+ ++|+++                  ..|.+.
T Consensus        95 ~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~  156 (355)
T 3amr_A           95 SEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFE  156 (355)
T ss_dssp             STTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC------------------SSSEEE
T ss_pred             CCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC------------------CCCeEE
Confidence            4   3454  4477777766542210 1 122357889888  775 44 456652                  223444


Q ss_pred             EEeC---CCCcEE----EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----CCCCCCceE
Q 018242          185 KYDP---ATKQVT----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----LPGFPDNIK  252 (359)
Q Consensus       185 ~~d~---~~~~~~----~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i~  252 (359)
                      .|..   ..+...    .-..-...|.+++.++....||+++.. ..||+|+.++....+.+.+..     +..-+.||+
T Consensus       157 q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLa  235 (355)
T 3amr_A          157 QYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLT  235 (355)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEE
T ss_pred             EEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEE
Confidence            3322   222121    112223578999999888889999977 569999976543222222222     222367888


Q ss_pred             EC--CCCC--EEEEEecCCCccccccccCCc--cceeeecC
Q 018242          253 RS--PRGG--FWVGIHSRRKGISKLVLSFPW--IGNVLIKL  287 (359)
Q Consensus       253 ~d--~~G~--lwv~~~~~~~~~~~~~~~~~~--~g~~~~~~  287 (359)
                      +.  ++|+  |++++.++..     ..+|+.  ..+.+..+
T Consensus       236 i~~~~~g~gyLivSsQG~~s-----~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          236 IYYAADGKGYLMASSQGNSS-----YAIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEECGGGCEEEEEEEGGGTE-----EEEEESSTTCCEEEEE
T ss_pred             EEecCCCCEEEEEEcCCCCE-----EEEEECCCCCcEEEEE
Confidence            84  4444  6666655543     444544  33444444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.26  E-value=0.00049  Score=65.85  Aligned_cols=204  Identities=7%  Similarity=-0.141  Sum_probs=120.4

Q ss_pred             CCceEEEccC------CCeeEEecCCCEEEEEEcCCcceE---EEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           35 GPESLAFDAL------GEGPYTGVSDGRIIKWHQDQRRWL---HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        35 ~p~~i~~~~~------G~~l~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      ...++++.|+      +.++.++..++.|..||..+++..   .+.  .      ..|    ...+.........+++++
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~--~------~~p----~~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM--C------EKP----SLTLSLADSLITTFDFLS  276 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC--C------CSC----SEEECCTTTCEEEEEESS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee--e------cCc----eEEEEcCCCCEEEEEecC
Confidence            3457889886      566778888999999998764210   000  0      000    001122223456888887


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeE--EEEeecCCCccccccceE--EEeCCC-CEEEEEeCCCccccccceeeeeecCCC
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLA--TAVATQSEGIPFRFCNSL--DIDQST-GIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l--~~d~~g-~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                       ++.|..+...+.|..+|..++..  ..+..     ....+..+  .+.++| + +.++-                 +..
T Consensus       277 -~~~lasgs~DgtV~lWD~~~~~~~~~~~~~-----H~~~V~sv~~~~s~~g~~-~laS~-----------------S~D  332 (524)
T 2j04_B          277 -PTTVVCGFKNGFVAEFDLTDPEVPSFYDQV-----HDSYILSVSTAYSDFEDT-VVSTV-----------------AVD  332 (524)
T ss_dssp             -SSEEEEEETTSEEEEEETTBCSSCSEEEEC-----SSSCEEEEEEECCTTSCC-EEEEE-----------------ETT
T ss_pred             -CCeEEEEeCCCEEEEEECCCCCCceEEeec-----ccccEEEEEEEcCCCCCe-EEEEe-----------------ccC
Confidence             66777776656688899886531  11211     11245667  456777 6 66662                 335


Q ss_pred             ceEEEEeCCCCcEE-EEeCCC--CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCC
Q 018242          181 GRLMKYDPATKQVT-VLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG  257 (359)
Q Consensus       181 g~v~~~d~~~~~~~-~~~~~~--~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G  257 (359)
                      +.|..||..+++.. .+....  .....++++|+++. +++...++.|..|++.....  ...+....+....++++++|
T Consensus       333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA--VHPLVSRETTITAIGVSRLH  409 (524)
T ss_dssp             SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC--CEEEEECSSCEEEEECCSSC
T ss_pred             CeEEEEECCCCCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc--ceeeecCCCceEEEEeCCCC
Confidence            67888997654321 111111  12467999999884 66767788999999765422  12232223335678999999


Q ss_pred             CEEEEEecCCCccccccccCCccce
Q 018242          258 GFWVGIHSRRKGISKLVLSFPWIGN  282 (359)
Q Consensus       258 ~lwv~~~~~~~~~~~~~~~~~~~g~  282 (359)
                      .+.++....+.     +..++..++
T Consensus       410 ~~l~Sgs~Dgt-----v~lwd~~~~  429 (524)
T 2j04_B          410 PMVLAGSADGS-----LIITNAARR  429 (524)
T ss_dssp             CBCEEEETTTE-----EECCBSCSS
T ss_pred             CeEEEEECCCE-----EEEEechHh
Confidence            86665555443     555554443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.26  E-value=0.00019  Score=66.46  Aligned_cols=168  Identities=10%  Similarity=0.051  Sum_probs=97.8

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcC---CcceEEEeecCCCCCCCCCCcccccccccc--cCCcceEEE--EecCC
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQD---QRRWLHFARTSPNRDGCEGAYEYDHAAKEH--ICGRPLGLC--FNKTN  107 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~gi~--~~~~~  107 (359)
                      ...++++.+++..++++..++.|..||..   +++........   .       ...+.+..  .......+.  +.+++
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~-------i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---C-------IRKINLKNFGKNEYAVRMRAFVNEEK  182 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---E-------EEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---e-------eEEEEccCcccccCceEEEEEEcCCC
Confidence            55689999999988899999999999884   32222111000   0       00001111  112233343  34523


Q ss_pred             CeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          108 GDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       108 g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      ..++.+...+.|..+|..+++........  .....+..++++|+++++..+                  +..+.|..||
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~------------------~~dg~i~iwd  242 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLERLQIIENS--PRHGAVSSICIDEECCVLILG------------------TTRGIIDIWD  242 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCEEEEEECC--GGGCCEEEEEECTTSCEEEEE------------------ETTSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeEEEccC--CCCCceEEEEECCCCCEEEEE------------------cCCCeEEEEE
Confidence            34444555556889999887654322210  012367889999999944444                  2356799999


Q ss_pred             CCCCcEEEEe--CCCCCCceEEEc----cCCCEEEEEecCCCEEEEEEcCCC
Q 018242          188 PATKQVTVLL--GNLSFPNGVALS----EDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       188 ~~~~~~~~~~--~~~~~p~gia~~----~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ..+++.....  .+......+++.    ++++ ++++...++.|..|++...
T Consensus       243 ~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          243 IRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             TTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTT
T ss_pred             cCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCC
Confidence            8876654322  222334567554    4554 6677777889999998643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.26  E-value=0.00019  Score=64.18  Aligned_cols=140  Identities=17%  Similarity=0.229  Sum_probs=84.1

Q ss_pred             CCeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC----CC---EEEEEeCCCccccccceeeeeecC
Q 018242          107 NGDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS----TG---IIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       107 ~g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~----g~---~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      ...++++ +...||+.||.++..++.+..       ..+|++.+-++    |+   .+++++...             +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-------g~~nnVD~r~~~~l~g~~~dla~as~R~~-------------~~   98 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-------GKLNNVDIRYDFPLNGKKVDIAAASNRSE-------------GK   98 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC-------SCEEEEEEEEEEEETTEEEEEEEEEECST-------------TC
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC-------CCcccEEEecccccCCceEeEEEEeCCCC-------------CC
Confidence            3445665 445689999997766655421       23455544432    22   146664320             01


Q ss_pred             CCceEEEEeCCCCcEEEEe-------CCCCCCceEEE--ccC-CC-EEEEEecCCCEEEEEEcCCCCC--cceeEeec--
Q 018242          179 KTGRLMKYDPATKQVTVLL-------GNLSFPNGVAL--SED-GN-YILLAETTSCRILRYWLKTSKA--GTIEIVAQ--  243 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~-------~~~~~p~gia~--~~d-~~-~l~v~~~~~~~i~~~~~~~~~~--~~~~~~~~--  243 (359)
                      ..-.+|.+|++++.+..+.       .....|.|+|+  +++ ++ ++|+++.. +.+..|++.....  ...+....  
T Consensus        99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEec
Confidence            1235677798887776652       23367899999  664 43 47777655 7999988853211  12232322  


Q ss_pred             CCCCCCceEECC-CCCEEEEEecCC
Q 018242          244 LPGFPDNIKRSP-RGGFWVGIHSRR  267 (359)
Q Consensus       244 ~~~~p~~i~~d~-~G~lwv~~~~~~  267 (359)
                      +++.|.++.+|+ .|.||++....+
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd~G  202 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEEDEA  202 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTE
T ss_pred             CCCCcceEEEcCCCCeEEEecccce
Confidence            567789999986 578999998744

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.24  E-value=0.0017  Score=60.23  Aligned_cols=202  Identities=14%  Similarity=0.108  Sum_probs=112.3

Q ss_pred             EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcE
Q 018242           40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGL  119 (359)
Q Consensus        40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i  119 (359)
                      ++..+|+.++++..++.|..||..+++....                    +.........+.+  ++..++.+...+.|
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~--------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i  195 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRI--------------------LTGHTGSVLCLQY--DERVIITGSSDSTV  195 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEE--------------------ECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEE--------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeE
Confidence            4556888788999999999999987643321                    1222233445555  25566666656669


Q ss_pred             EEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE----E
Q 018242          120 LKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT----V  195 (359)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~----~  195 (359)
                      ..+|.++++.......    ....+..+.++  ++.++.+                  +..+.|..+|..++...    .
T Consensus       196 ~vwd~~~~~~~~~~~~----h~~~v~~l~~~--~~~l~s~------------------s~dg~i~vwd~~~~~~~~~~~~  251 (435)
T 1p22_A          196 RVWDVNTGEMLNTLIH----HCEAVLHLRFN--NGMMVTC------------------SKDRSIAVWDMASPTDITLRRV  251 (435)
T ss_dssp             EEEESSSCCEEEEECC----CCSCEEEEECC--TTEEEEE------------------ETTSCEEEEECSSSSCCEEEEE
T ss_pred             EEEECCCCcEEEEEcC----CCCcEEEEEEc--CCEEEEe------------------eCCCcEEEEeCCCCCCceeeeE
Confidence            9999988765432221    11234556664  3424444                  23567888887765432    2


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccc
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVL  275 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~  275 (359)
                      ..........+++  +++. +++...++.|..||+.....  ...+.........+.+  ++++.++....+.     +.
T Consensus       252 ~~~~~~~v~~~~~--~~~~-l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-----i~  319 (435)
T 1p22_A          252 LVGHRAAVNVVDF--DDKY-IVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNT-----IR  319 (435)
T ss_dssp             ECCCSSCEEEEEE--ETTE-EEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ETTEEEEEETTSC-----EE
T ss_pred             ecCCCCcEEEEEe--CCCE-EEEEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-----EE
Confidence            2222333455665  5664 55556778999999865421  2222221222233455  4555554444443     55


Q ss_pred             cCC-ccceeeecCCccceeeeeecc
Q 018242          276 SFP-WIGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       276 ~~~-~~g~~~~~~~~~~~~~~~~~~  299 (359)
                      .++ ..++.+..+......+..+.+
T Consensus       320 iwd~~~~~~~~~~~~h~~~v~~~~~  344 (435)
T 1p22_A          320 LWDIECGACLRVLEGHEELVRCIRF  344 (435)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEC
T ss_pred             EEECCCCCEEEEEeCCcCcEEEEEe
Confidence            555 356666666554444555444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.24  E-value=2.1e-05  Score=75.46  Aligned_cols=154  Identities=9%  Similarity=-0.004  Sum_probs=96.7

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE--EEecCCC-eEEE
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL--CFNKTNG-DLYI  112 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi--~~~~~~g-~l~v  112 (359)
                      ..++++.+++ .++++..++.|..||..+++....                   .+.........+  ++++ ++ ++++
T Consensus       269 v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------------------~~~~H~~~V~sv~~~~s~-~g~~~la  327 (524)
T 2j04_B          269 ITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------------------YDQVHDSYILSVSTAYSD-FEDTVVS  327 (524)
T ss_dssp             EEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------------------EEECSSSCEEEEEEECCT-TSCCEEE
T ss_pred             EEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------------------EeecccccEEEEEEEcCC-CCCeEEE
Confidence            3478888766 489999999999999976421000                   111222335666  3455 55 6666


Q ss_pred             EeCC-CcEEEEeCCCCeEE-EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADAY-FGLLKVGPEGGLAT-AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~~-~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +... +.|..+|..+++.. .+....   ....+..++++|+++ .+++..                 ..+.|..+|..+
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~---~~~~v~~v~fsp~~~-~l~s~~-----------------~d~tv~lwd~~~  386 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRF---RGSNLVPVVYCPQIY-SYIYSD-----------------GASSLRAVPSRA  386 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEEC---SCCSCCCEEEETTTT-EEEEEC-----------------SSSEEEEEETTC
T ss_pred             EeccCCeEEEEECCCCCccccccccc---ccCcccceEeCCCcC-eEEEeC-----------------CCCcEEEEECcc
Confidence            5444 45778888764421 111111   111356799999999 666622                 244688888876


Q ss_pred             CcE-EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          191 KQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       191 ~~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      +.. ..+.........++++|+++. +++.+.++.|..|++..
T Consensus       387 ~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          387 AFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAAR  428 (524)
T ss_dssp             TTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCS
T ss_pred             cccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechH
Confidence            553 334444556789999999984 56677889999998654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=98.22  E-value=0.00034  Score=63.25  Aligned_cols=202  Identities=5%  Similarity=-0.080  Sum_probs=110.3

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..-.++++++||+++.++.. .++..||.++.+.....                  .  .  .....+.+.+..+.+.++
T Consensus        20 ~~V~~v~fs~dg~~la~g~~-~~~~iw~~~~~~~~~~~------------------~--~--~~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTL-KSFEIYNVHPVAHIMSQ------------------E--M--RHLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECS-SEEEEEEETTEEEEEEE------------------E--C--SCCCEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcC-CEEEEEecCCcceeeee------------------e--c--CCeEEEEEcCCCCEEEEE
Confidence            35569999999996666655 56889998765322111                  0  0  112345566634445444


Q ss_pred             eCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCC-------CCEEEEEeCCCc-cccccc-----------eee
Q 018242          114 DAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQS-------TGIIYFTDSSSQ-FQRRNH-----------ISV  173 (359)
Q Consensus       114 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~-------g~~l~v~d~~~~-~~~~~~-----------~~~  173 (359)
                      ... +.|..+|..+++...... ..    ..+..+.++++       +. +++=+.... -.....           ...
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~-~~----~~v~~v~~~~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~~~~s~~~l  150 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK-VD----APVKDLFLSREFIVVSYGDV-ISVFKFGNPWKRITDDIRFGGVCEFSNGLL  150 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE-CS----SCEEEEEECSSEEEEEETTE-EEEEESSTTCCBSSCCEEEEEEEEEETTEE
T ss_pred             ECCccEEEEEECCCCcEEEEEE-CC----CceEEEEEcCCEEEEEEcCE-EEEEECCCCceeeEEeccCCceEEEEccEE
Confidence            333 358888988776533222 11    12334444443       33 333332211 000000           000


Q ss_pred             eee-cCCCceEEEEeCCCCc-----------------EEEEeCCCCCCceEEEccCCCEEEEEecCCCE-EEEEEcCCCC
Q 018242          174 ILS-GDKTGRLMKYDPATKQ-----------------VTVLLGNLSFPNGVALSEDGNYILLAETTSCR-ILRYWLKTSK  234 (359)
Q Consensus       174 ~~~-~~~~g~v~~~d~~~~~-----------------~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~-i~~~~~~~~~  234 (359)
                      ... +...|.|..+|..++.                 ...+..+......++++||++ ++++.+.++. |..||+...+
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCC
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCc
Confidence            111 4556788889987654                 344444445568999999998 5566667787 9999986432


Q ss_pred             CcceeEee-c-CCCCCCceEECCCCCEEEEEecCC
Q 018242          235 AGTIEIVA-Q-LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       235 ~~~~~~~~-~-~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                        ....+. . ..+....++++++|++.++....+
T Consensus       230 --~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          230 --LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             --EEEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             --EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence              122233 1 223345689999998777665544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.21  E-value=0.00086  Score=59.85  Aligned_cols=180  Identities=9%  Similarity=-0.005  Sum_probs=103.0

Q ss_pred             CCceEEEccCCCeeEEec-C----CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           35 GPESLAFDALGEGPYTGV-S----DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~-~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      ....+.++|||+.++... .    ...|+.++..+++...+.                     .... ...+.++|++..
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~---------------------~~~~-~~~~~wspdg~~  117 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL---------------------EAKN-IRSLEWNEDSRK  117 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE---------------------EESE-EEEEEECTTSSE
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE---------------------cCCC-ccceeECCCCCE
Confidence            456789999998555433 2    235899998877544332                     1112 567888885555


Q ss_pred             EEEEeC---------------------------CCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeC
Q 018242          110 LYIADA---------------------------YFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDS  161 (359)
Q Consensus       110 l~v~~~---------------------------~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~  161 (359)
                      |+++..                           ...|++++..+++. +.+..     +  .+..+.++|+| .+|++..
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEEC
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEec
Confidence            666532                           13488899988876 44432     1  45678999999 5666633


Q ss_pred             CCccccccceeeeeecCC-CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecC-------CCEEEEEEcCCC
Q 018242          162 SSQFQRRNHISVILSGDK-TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-------SCRILRYWLKTS  233 (359)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~-~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~-------~~~i~~~~~~~~  233 (359)
                      ...-          .... ...|+.++  +++.+.+...  . ....++|||+.+++....       ...|+.++ .+ 
T Consensus       190 ~~~~----------~~~~~~~~l~~~d--~~~~~~l~~~--~-~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~-  252 (347)
T 2gop_A          190 REII----------PQYFKFWDIYIWE--DGKEEKMFEK--V-SFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK-  252 (347)
T ss_dssp             CCSS----------CCSSCCEEEEEEE--TTEEEEEEEE--E-SEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS-
T ss_pred             cccc----------ccccccccEEEeC--CCceEEeccC--c-ceeeECCCCCEEEEEEccccCCccccceEEEEC-CC-
Confidence            2100          0001 34688898  4666555433  1 122348999977666543       35788887 21 


Q ss_pred             CCcceeEeec-CCCCCCc-eEECCCCCEEEEEecC
Q 018242          234 KAGTIEIVAQ-LPGFPDN-IKRSPRGGFWVGIHSR  266 (359)
Q Consensus       234 ~~~~~~~~~~-~~~~p~~-i~~d~~G~lwv~~~~~  266 (359)
                         ....+.. ......+ +.++ +| +++.....
T Consensus       253 ---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          253 ---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             ---CEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             ---ceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence               1222221 1222233 6777 78 76655443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.19  E-value=2.1e-05  Score=74.56  Aligned_cols=117  Identities=16%  Similarity=0.243  Sum_probs=78.8

Q ss_pred             cceEEEEecCCCeEEEEeCC----------------------CcEEEEeCCCC-----e--EEEEee--cC---------
Q 018242           97 RPLGLCFNKTNGDLYIADAY----------------------FGLLKVGPEGG-----L--ATAVAT--QS---------  136 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~----------------------~~i~~~~~~~~-----~--~~~~~~--~~---------  136 (359)
                      +|-++.++|.++++|++-..                      +.|+++..+++     .  +..+..  ..         
T Consensus       385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~  464 (592)
T 4a9v_A          385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG  464 (592)
T ss_dssp             CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred             CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence            57799999989999998432                      23888876432     1  222221  00         


Q ss_pred             ------CCccccccceEEEeCCCCEEEE-EeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC--CCCCceEE
Q 018242          137 ------EGIPFRFCNSLDIDQSTGIIYF-TDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN--LSFPNGVA  207 (359)
Q Consensus       137 ------~~~~~~~~~~l~~d~~g~~l~v-~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p~gia  207 (359)
                            ....+..|++|++|++|+ ||| +|....... .     .+......|+++++++++++.+...  ...|+|++
T Consensus       465 g~~~~~~~~~fnsPDnL~fd~~G~-LWf~TD~~~~~~g-~-----~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGia  537 (592)
T 4a9v_A          465 GSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAG-D-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGIS  537 (592)
T ss_dssp             CCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSG-G-----GTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEE
T ss_pred             CccCccccCccCCCCceEECCCCC-EEEEeCCCcCccc-c-----ccccCCceEEEEeCCCCeEEEEEeCCCCccccCCE
Confidence                  012468899999999999 999 665421000 0     0111233799999988888877643  45689999


Q ss_pred             EccCCCEEEEEec
Q 018242          208 LSEDGNYILLAET  220 (359)
Q Consensus       208 ~~~d~~~l~v~~~  220 (359)
                      |+||+++|||+-.
T Consensus       538 fSPD~ktLfV~vQ  550 (592)
T 4a9v_A          538 FSPDQKTLFVGIQ  550 (592)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCEEEEEEe
Confidence            9999999999853

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.18  E-value=0.00014  Score=72.25  Aligned_cols=172  Identities=6%  Similarity=-0.016  Sum_probs=93.4

Q ss_pred             CceEEEccCCCeeEEecC---------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           36 PESLAFDALGEGPYTGVS---------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ..+++++|||+.+..+..         ++.|+.||.++++...                     ..........++++|+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~---------------------~~~l~~~~~~~~~SPD  120 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR---------------------GNELPRPIQYLCWSPV  120 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---------------------SSCCCSSBCCEEECSS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc---------------------ceecCcccccceECCC
Confidence            678999999996665544         4789999998873200                     0111123556889995


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCcc--------------ccccceEEEeCCCCEEEEEeCC-Cc---ccc-
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIP--------------FRFCNSLDIDQSTGIIYFTDSS-SQ---FQR-  167 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~d~~g~~l~v~d~~-~~---~~~-  167 (359)
                      +..|..+. .+.|+.++..+++...+........              ......+.++|||++|.++... ..   |.. 
T Consensus       121 G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          121 GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             TTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred             CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence            44555553 4579999998877654321110000              0122479999999966665211 00   000 


Q ss_pred             ----ccc--eeee-----eecCCCceEEEEeCCCCcEE---EEe------CCCCCCceEEEccCCCEEEEEe-cCC--CE
Q 018242          168 ----RNH--ISVI-----LSGDKTGRLMKYDPATKQVT---VLL------GNLSFPNGVALSEDGNYILLAE-TTS--CR  224 (359)
Q Consensus       168 ----~~~--~~~~-----~~~~~~g~v~~~d~~~~~~~---~~~------~~~~~p~gia~~~d~~~l~v~~-~~~--~~  224 (359)
                          ..+  ...+     ........|+.+|.++++..   .+.      ........++++||++.++... ...  ..
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~  279 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV  279 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence                000  0000     00011236888898876531   211      1112236789999976444322 222  35


Q ss_pred             EEEEE
Q 018242          225 ILRYW  229 (359)
Q Consensus       225 i~~~~  229 (359)
                      |+.++
T Consensus       280 l~~~d  284 (719)
T 1z68_A          280 LSICD  284 (719)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            88888

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.17  E-value=0.0028  Score=61.23  Aligned_cols=173  Identities=8%  Similarity=0.013  Sum_probs=88.5

Q ss_pred             EEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC---
Q 018242           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA---  115 (359)
Q Consensus        39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~---  115 (359)
                      ++++ +++ +|+.+.++.|+.+|..+++...-.......            ........|   .+.  ++.+|++..   
T Consensus       111 ~~~~-~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~------------~~~~~~~~P---~v~--~g~v~vg~~~~~  171 (571)
T 2ad6_A          111 LAYG-AGQ-IVKKQANGHLLALDAKTGKINWEVEVCDPK------------VGSTLTQAP---FVA--KDTVLMGCSGAE  171 (571)
T ss_dssp             CEEE-TTE-EEEECTTSEEEEEETTTCCEEEEEECCCGG------------GTCBCCSCC---EEE--TTEEEEECBCGG
T ss_pred             cEEE-CCE-EEEEeCCCEEEEEECCCCCEEEEecCCCCC------------ccceeccCC---EEE--CCEEEEEecCCc
Confidence            4443 455 889888899999999887644322111000            000111122   122  678888864   


Q ss_pred             ---CCcEEEEeCCCCeEEEEeecCCCc------c-------c--------------------ccc-ceEEEeCCCCEEEE
Q 018242          116 ---YFGLLKVGPEGGLATAVATQSEGI------P-------F--------------------RFC-NSLDIDQSTGIIYF  158 (359)
Q Consensus       116 ---~~~i~~~~~~~~~~~~~~~~~~~~------~-------~--------------------~~~-~~l~~d~~g~~l~v  158 (359)
                         .+.|+.+|.++|+..-........      +       .                    ..+ ..+++|++.+.+|+
T Consensus       172 ~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~  251 (571)
T 2ad6_A          172 LGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY  251 (571)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             cCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEE
Confidence               345999999988765322211110      0       0                    000 23678877555998


Q ss_pred             EeCCCc-cccccceeeeeecCCCceEEEEeCCCCcEEEEeCC----------CCCCceEEEccCCC--EEEEEecCCCEE
Q 018242          159 TDSSSQ-FQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN----------LSFPNGVALSEDGN--YILLAETTSCRI  225 (359)
Q Consensus       159 ~d~~~~-~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----------~~~p~gia~~~d~~--~l~v~~~~~~~i  225 (359)
                      +..... |......   ......+.|+.+|+++++.......          ...|.-.....+|+  .+++....++.+
T Consensus       252 ~~g~~~~~~~~~~~---gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l  328 (571)
T 2ad6_A          252 GSGNPAPWNETMRP---GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGIL  328 (571)
T ss_dssp             ECCCCSCSCGGGSC---SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEE
T ss_pred             ECCCCccccCCccC---CCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEE
Confidence            853210 1100000   0001124699999999988754321          11222222223564  344445566788


Q ss_pred             EEEEcCCC
Q 018242          226 LRYWLKTS  233 (359)
Q Consensus       226 ~~~~~~~~  233 (359)
                      +.+|....
T Consensus       329 ~~lD~~tG  336 (571)
T 2ad6_A          329 YTLNRENG  336 (571)
T ss_dssp             EEEETTTC
T ss_pred             EEEECCCC
Confidence            88886543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=0.00018  Score=73.58  Aligned_cols=156  Identities=6%  Similarity=-0.036  Sum_probs=103.3

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -.++++.+ |++++++..++.|..||..+++...                    .+. .......+++++++..++++..
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~--------------------~~~-~~~~V~~v~~sp~g~~l~sgs~  118 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT--------------------TVF-VPGKITSIDTDASLDWMLIGLQ  118 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE--------------------EEE-CSSCEEEEECCTTCSEEEEEET
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE--------------------EEc-CCCCEEEEEECCCCCEEEEEcC
Confidence            45889999 8878888889999999998764221                    111 1234678899996666777776


Q ss_pred             CCcEEEEeCCCCeEEEEee-------cCCCccccccceEEEeCCC-CEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          116 YFGLLKVGPEGGLATAVAT-------QSEGIPFRFCNSLDIDQST-GIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~d~~g-~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      .+.|..+|.++++...+..       .........+..++++|++ +.+.++                  ...+.| .||
T Consensus       119 dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g------------------~~dg~v-lWd  179 (902)
T 2oaj_A          119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS------------------YEYVTL-TYS  179 (902)
T ss_dssp             TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE------------------CSSCEE-EEE
T ss_pred             CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE------------------eCCCcE-EEE
Confidence            6669999999887532211       0011122357889999974 424433                  235678 999


Q ss_pred             CCCCcEEEEeCC-------------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          188 PATKQVTVLLGN-------------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       188 ~~~~~~~~~~~~-------------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ..+++.......                   ......++|+||++ .+++...++.|..||+...
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTC
T ss_pred             CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC
Confidence            887765433221                   12357899999998 5666677889999998653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.13  E-value=0.00027  Score=70.63  Aligned_cols=210  Identities=13%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             ceEEEccCCCeeEEecC-C----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           37 ESLAFDALGEGPYTGVS-D----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      .++.++|||+.+..+.. .    ..|+.+|..+++.....                   ...  ....+++++++ ..|+
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-------------------~~~--~~~~~~~wspD-~~l~  223 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-------------------LKW--VKFSGLAWLGN-DALL  223 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-------------------EEE--EESCCCEESTT-SEEE
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-------------------CCC--ceeccEEEECC-CEEE
Confidence            36789999986544332 2    36999999988554321                   000  01135678885 7777


Q ss_pred             EEeCCC--------------cEEEEeCCCCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242          112 IADAYF--------------GLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus       112 v~~~~~--------------~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ++....              .|++++..++..  +.+... ...+ ....++.+++||++|.++....            
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~-~~~~~~~~SpDG~~l~~~~~~~------------  289 (741)
T 1yr2_A          224 YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELP-KRGHGASVSSDGRWVVITSSEG------------  289 (741)
T ss_dssp             EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTCT-TCEEEEEECTTSCEEEEEEECT------------
T ss_pred             EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCC-eEEEEEEECCCCCEEEEEEEcc------------
Confidence            764322              377888766542  122221 1111 1345788999999676663210            


Q ss_pred             ecCCCceEEEEeCCCC--c-EEEEeCCCCCCceEEEccCCCEEEEEecC---CCEEEEEEcCCCCCcceeEeec-CCCCC
Q 018242          176 SGDKTGRLMKYDPATK--Q-VTVLLGNLSFPNGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIEIVAQ-LPGFP  248 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~--~-~~~~~~~~~~p~gia~~~d~~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~-~~~~p  248 (359)
                       ......|+.+|.+++  . .+.+.......... ++++++.+|+....   +..|++++++... ...+.+.. .....
T Consensus       290 -~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l  366 (741)
T 1yr2_A          290 -TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNL  366 (741)
T ss_dssp             -TCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEE
T ss_pred             -CCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeE
Confidence             012347888888766  4 55554333222333 45888888777543   4579999976532 22222222 22222


Q ss_pred             CceEECCCCCEEEEEecCCCccccccccCCccceeeecCCc
Q 018242          249 DNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  289 (359)
Q Consensus       249 ~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  289 (359)
                      .++.++ ++.++++....+.   ..+..++..|+....++.
T Consensus       367 ~~~~~~-~~~lv~~~~~dg~---~~l~~~~~~g~~~~~l~~  403 (741)
T 1yr2_A          367 ESVGIA-GNRLFASYIHDAK---SQVLAFDLDGKPAGAVSL  403 (741)
T ss_dssp             EEEEEE-BTEEEEEEEETTE---EEEEEEETTSCEEEECBC
T ss_pred             EEEEEE-CCEEEEEEEECCE---EEEEEEeCCCCceeeccC
Confidence            345555 4556665544332   113444445555555544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.09  E-value=0.00013  Score=67.07  Aligned_cols=148  Identities=8%  Similarity=-0.020  Sum_probs=84.7

Q ss_pred             EccCCCeeEEecCCCEEEEEEcCC--cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec-CCCeEEEEeCCC
Q 018242           41 FDALGEGPYTGVSDGRIIKWHQDQ--RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK-TNGDLYIADAYF  117 (359)
Q Consensus        41 ~~~~G~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~g~l~v~~~~~  117 (359)
                      .|.+|+ +|+++.. ++++++.+.  ..|+....                 .  ........|++++ +.+.||++...+
T Consensus        19 ~d~~g~-l~vgt~~-Gl~~~~~~~~g~~W~~~~~-----------------~--~~~~~v~~i~~dp~~~~~l~~g~~~g   77 (394)
T 3b7f_A           19 ESGPVM-LLVATIK-GAWFLASDPARRTWELRGP-----------------V--FLGHTIHHIVQDPREPERMLMAARTG   77 (394)
T ss_dssp             CCSCCE-EEEEETT-EEEEEEECTTSCSEEEEEE-----------------E--STTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred             CCCCCE-EEEEecC-ceEEEECCCCCCCceECCc-----------------c--CCCCceEEEEECCCCCCeEEEEecCC
Confidence            345666 9999975 588887654  45655420                 0  1123356888887 467899987554


Q ss_pred             ----cEEEEeCCCCeEEEEeec--CCCc-------cccccceEEEeC---CCCEEEEEeCCCccccccceeeeeecCCCc
Q 018242          118 ----GLLKVGPEGGLATAVATQ--SEGI-------PFRFCNSLDIDQ---STGIIYFTDSSSQFQRRNHISVILSGDKTG  181 (359)
Q Consensus       118 ----~i~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~l~~d~---~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g  181 (359)
                          +|++.+-.+..++.+...  ....       ....+..|++++   .++ +|++.                  ..+
T Consensus        78 ~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-l~~g~------------------~~g  138 (394)
T 3b7f_A           78 HLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGT-WYAGT------------------SPQ  138 (394)
T ss_dssp             -CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTC-EEEEE------------------ETT
T ss_pred             CCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCE-EEEEe------------------cCC
Confidence                688876555555554321  1111       112345688886   566 99972                  135


Q ss_pred             eEEEEeCCCCcEEEEeCC-----------------C--CCCceEEEccC-CCEEEEEecCCCEEEEEE
Q 018242          182 RLMKYDPATKQVTVLLGN-----------------L--SFPNGVALSED-GNYILLAETTSCRILRYW  229 (359)
Q Consensus       182 ~v~~~d~~~~~~~~~~~~-----------------~--~~p~gia~~~d-~~~l~v~~~~~~~i~~~~  229 (359)
                      +|++.+..+...+.+...                 .  .....|+++|. .+.+|+... .+.|++.+
T Consensus       139 gl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~  205 (394)
T 3b7f_A          139 GLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST  205 (394)
T ss_dssp             EEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES
T ss_pred             cEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC
Confidence            788887665555544210                 0  01236777763 445777653 35677663

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.09  E-value=0.0023  Score=63.18  Aligned_cols=178  Identities=15%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC--
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA--  115 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~--  115 (359)
                      +++++ +++ +|+++.++.|+.+|..+++...-........           ........|   .+.  ++.+|++..  
T Consensus       123 ~~a~~-~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-----------~~~~~~~~p---~v~--~~~v~v~~~~~  184 (677)
T 1kb0_A          123 GVALW-KGK-VYVGAWDGRLIALDAATGKEVWHQNTFEGQK-----------GSLTITGAP---RVF--KGKVIIGNGGA  184 (677)
T ss_dssp             CCEEE-TTE-EEEECTTSEEEEEETTTCCEEEEEETTTTCC-----------SSCBCCSCC---EEE--TTEEEECCBCT
T ss_pred             CceEE-CCE-EEEEcCCCEEEEEECCCCCEEeeecCCcCcC-----------cCcccccCc---EEE--CCEEEEEeccc
Confidence            45553 444 8999989999999998876443221110000           000111112   122  678888754  


Q ss_pred             ----CCcEEEEeCCCCeEEEEeecCCCcc----------------------------ccccceEEEeCCCCEEEEEeCCC
Q 018242          116 ----YFGLLKVGPEGGLATAVATQSEGIP----------------------------FRFCNSLDIDQSTGIIYFTDSSS  163 (359)
Q Consensus       116 ----~~~i~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~l~~d~~g~~l~v~d~~~  163 (359)
                          .+.|+.+|.++|+..-.........                            ...-..+++|++++.+|++....
T Consensus       185 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~  264 (677)
T 1kb0_A          185 EYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNG  264 (677)
T ss_dssp             TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred             ccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCC
Confidence                2358999999888653222111100                            00113578899888788874321


Q ss_pred             c-cccccceeeeeecCCCceEEEEeCCCCcEEEEeCC----------CCCCceEEEccCCC--EEEEEecCCCEEEEEEc
Q 018242          164 Q-FQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN----------LSFPNGVALSEDGN--YILLAETTSCRILRYWL  230 (359)
Q Consensus       164 ~-~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----------~~~p~gia~~~d~~--~l~v~~~~~~~i~~~~~  230 (359)
                      . |............-..+.|+.+|+++|+.......          ...|.-.....||+  .+++....++.|+.+|.
T Consensus       265 ~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          265 SPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDR  344 (677)
T ss_dssp             ESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred             ccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEEC
Confidence            0 10000000000011224699999999988764321          11232222223563  34555556778888886


Q ss_pred             CCC
Q 018242          231 KTS  233 (359)
Q Consensus       231 ~~~  233 (359)
                      ...
T Consensus       345 ~tG  347 (677)
T 1kb0_A          345 TNG  347 (677)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.06  E-value=0.00069  Score=67.15  Aligned_cols=210  Identities=10%  Similarity=0.087  Sum_probs=110.7

Q ss_pred             ceEEEccCCCeeE-EecCC----CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           37 ESLAFDALGEGPY-TGVSD----GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        37 ~~i~~~~~G~~l~-~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      .+++++|||+.+. +....    ..|+.+|..+++.....                   +...  ...+++++ ++..|+
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-------------------~~~~--k~~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-------------------LKDV--KFSGISWL-GNEGFF  189 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-------------------EEEE--ESCCCEEE-TTTEEE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-------------------cCCc--eeccEEEe-CCCEEE
Confidence            3668999998544 33222    46899999988643321                   1100  01345677 577777


Q ss_pred             EEeCC-------------CcEEEEeCCCCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242          112 IADAY-------------FGLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       112 v~~~~-------------~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ++...             ..|++.+..++..  +.+.. ..........++.+++||++|+++...              
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~-~~~~~~~~~~~~~~SpDg~~l~~~~~~--------------  254 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG-AIPAQHHRYVGATVTEDDRFLLISAAN--------------  254 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCGGGCEEEES-CSGGGCCSEEEEEECTTSCEEEEEEES--------------
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCcccceEEEe-cCCCCCeEEEEEEEcCCCCEEEEEEcc--------------
Confidence            76543             1378877766542  22222 111001123467899999977776322              


Q ss_pred             cCCCceEEEEeCCCC--cEEEEeCCCCCCceEEEccCCCEEEEEecC---CCEEEEEEcCCCCCcceeEeecCCCCCCce
Q 018242          177 GDKTGRLMKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETT---SCRILRYWLKTSKAGTIEIVAQLPGFPDNI  251 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~--~~~~~~~~~~~p~gia~~~d~~~l~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i  251 (359)
                      ......|+.+|.+++  ..+.+......... .++++++.+|+....   +.+|++++++.......+.+..-  ..+.+
T Consensus       255 ~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~  331 (693)
T 3iuj_A          255 STSGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQVL  331 (693)
T ss_dssp             SSSCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSCE
T ss_pred             CCCCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCEE
Confidence            112347999997654  44544433222222 266777777766544   36899999876433222333321  11223


Q ss_pred             EECCCCC-EEEEEecCCCccccccccCCccceeeecCCc
Q 018242          252 KRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI  289 (359)
Q Consensus       252 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~  289 (359)
                      .++++|+ |.++....+.   ..+..++.+|.....++.
T Consensus       332 ~~s~~g~~lv~~~~~~g~---~~l~~~d~~g~~~~~l~~  367 (693)
T 3iuj_A          332 TVHSGSGYLFAEYMVDAT---ARVEQFDYEGKRVREVAL  367 (693)
T ss_dssp             EEEEETTEEEEEEEETTE---EEEEEECTTSCEEEEECC
T ss_pred             EEEEECCEEEEEEEECCe---eEEEEEECCCCeeEEeec
Confidence            5556665 4444444331   114455555555555444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.05  E-value=0.0053  Score=59.31  Aligned_cols=125  Identities=12%  Similarity=0.120  Sum_probs=67.8

Q ss_pred             CCCeeEEecC-CCEEEEEEc-CCcceEEEeecCCCCCCCCCCccccccccccc-C-CcceEEEEecCCCeEEEEeCCCcE
Q 018242           44 LGEGPYTGVS-DGRIIKWHQ-DQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-C-GRPLGLCFNKTNGDLYIADAYFGL  119 (359)
Q Consensus        44 ~G~~l~~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p~gi~~~~~~g~l~v~~~~~~i  119 (359)
                      +|+ +|+... ++.|+.+|. .+++...-......       .+    ..... + ....+++++  ++.+|+++..+.|
T Consensus        62 ~g~-vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~-------~~----~~~~~~~~~~~~~~~~~--~~~v~v~~~dg~l  127 (571)
T 2ad6_A           62 GDM-MYVHSAFPNNTYALNLNDPGKIVWQHKPKQD-------AS----TKAVMCCDVVDRGLAYG--AGQIVKKQANGHL  127 (571)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEEECCCCC-------GG----GGGGCTTCSCCCCCEEE--TTEEEEECTTSEE
T ss_pred             CCE-EEEEeCCCCEEEEEeCCCCccEEEEEcCCCC-------cc----ccccccccccccccEEE--CCEEEEEeCCCEE
Confidence            555 888887 789999999 77764432211100       00    00000 0 011244554  7899999766679


Q ss_pred             EEEeCCCCeEEEEeecCCCcc-ccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          120 LKVGPEGGLATAVATQSEGIP-FRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +.+|.++|+..-......... ......-++. +|. +|++..+..+            ...+.|+.+|+++++....
T Consensus       128 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~-v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          128 LALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDT-VLMGCSGAEL------------GVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTE-EEEECBCGGG------------TCCCEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEEecCCCCCccceeccCCEEE-CCE-EEEEecCCcc------------CCCCEEEEEECCCCcEEEE
Confidence            999999988653222111000 0001111222 566 9988432110            1246799999998887653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=98.05  E-value=0.00076  Score=61.83  Aligned_cols=191  Identities=11%  Similarity=-0.004  Sum_probs=101.3

Q ss_pred             ceEEEcc--------CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           37 ESLAFDA--------LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        37 ~~i~~~~--------~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      .++++.|        ||+++..+..++.|..||..++....                    ...........++++|++.
T Consensus       140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------------------~~~~~~~~v~~v~~~p~~~  199 (393)
T 4gq1_A          140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------------------AGYPLSSPGISVQFRPSNP  199 (393)
T ss_dssp             EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------------------EEEECSSCEEEEEEETTEE
T ss_pred             EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------------------eecCCCCCcEEEEECCCCC
Confidence            4788876        78878888899999999986542111                    1112223456899999555


Q ss_pred             eEEE-EeCCCcEEEEeCCCCeEEEEeecCC---------------------CccccccceEEEe-CCCCEEEEEeCCCcc
Q 018242          109 DLYI-ADAYFGLLKVGPEGGLATAVATQSE---------------------GIPFRFCNSLDID-QSTGIIYFTDSSSQF  165 (359)
Q Consensus       109 ~l~v-~~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~d-~~g~~l~v~d~~~~~  165 (359)
                      ++++ +...+.|..+|..+++.........                     .........+.+. ++|++++.+      
T Consensus       200 ~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~------  273 (393)
T 4gq1_A          200 NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM------  273 (393)
T ss_dssp             EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE------
T ss_pred             ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE------
Confidence            5444 4444458888987765321100000                     0011233455555 677733333      


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCcEEE-Ee------------------CCCCCCceEEEcc-CCCEEEEEecCCCEE
Q 018242          166 QRRNHISVILSGDKTGRLMKYDPATKQVTV-LL------------------GNLSFPNGVALSE-DGNYILLAETTSCRI  225 (359)
Q Consensus       166 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~------------------~~~~~p~gia~~~-d~~~l~v~~~~~~~i  225 (359)
                                  ...+.+..+|..++.... +.                  .......+..+.+ .++.+.++...++.|
T Consensus       274 ------------s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V  341 (393)
T 4gq1_A          274 ------------CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLI  341 (393)
T ss_dssp             ------------CTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEE
T ss_pred             ------------eCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEE
Confidence                        223456666654332111 00                  0001112233433 445566777888999


Q ss_pred             EEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          226 LRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ..|+...+...  ............++++++|+++++...++
T Consensus       342 ~lwd~~~~~~~--~~~~~~~~~V~svafspdG~~LA~as~~G  381 (393)
T 4gq1_A          342 QLINTYEKDSN--SIPIQLGMPIVDFCWHQDGSHLAIATEGS  381 (393)
T ss_dssp             EEEETTCTTCC--EEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred             EEEECCCCcEE--EEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            99998654322  22222223346799999999877665544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.99  E-value=0.0023  Score=57.69  Aligned_cols=73  Identities=8%  Similarity=0.088  Sum_probs=52.2

Q ss_pred             cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce-EEEEeCCCCcEEEEeC---CCCCCceEEEccCCCEEEE
Q 018242          142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR-LMKYDPATKQVTVLLG---NLSFPNGVALSEDGNYILL  217 (359)
Q Consensus       142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~-v~~~d~~~~~~~~~~~---~~~~p~gia~~~d~~~l~v  217 (359)
                      ..+..++++|+|+ +.++-                 +..+. |..||..+++......   .......++|+||++. ++
T Consensus       196 ~~v~~~~~s~~g~-~l~s~-----------------s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~  256 (355)
T 3vu4_A          196 NPIKMVRLNRKSD-MVATC-----------------SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSK-LA  256 (355)
T ss_dssp             SCEEEEEECTTSS-EEEEE-----------------ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCE-EE
T ss_pred             CceEEEEECCCCC-EEEEE-----------------eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCE-EE
Confidence            3567899999999 55541                 33566 8889988776544332   3445678999999985 55


Q ss_pred             EecCCCEEEEEEcCCC
Q 018242          218 AETTSCRILRYWLKTS  233 (359)
Q Consensus       218 ~~~~~~~i~~~~~~~~  233 (359)
                      +.+.++.|..|++...
T Consensus       257 s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          257 VVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEETTCEEEEEESSCC
T ss_pred             EEECCCEEEEEEccCC
Confidence            5567789999998654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.91  E-value=0.0014  Score=61.13  Aligned_cols=158  Identities=9%  Similarity=-0.014  Sum_probs=95.0

Q ss_pred             CCceEEEccCCCeeE----EecCCCEEEEEEcCCc-----c----eEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           35 GPESLAFDALGEGPY----TGVSDGRIIKWHQDQR-----R----WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~----~~~~~~~i~~~d~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      ...+++++++|+.++    .+..++.|..||..+.     +    +..+.                  ...........+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~------------------~~~~h~~~V~~v  155 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK------------------LLKDAGGMVIDM  155 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE------------------CCCSGGGSEEEE
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee------------------ccCCCCCceEEE
Confidence            467999999999777    4556789999997543     0    00110                  111122346789


Q ss_pred             EEecCCCeEEE-EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          102 CFNKTNGDLYI-ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       102 ~~~~~~g~l~v-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      +++++++++++ +...+.|..+|.+++.......  .  ....+..++++|+|++|+++                  ...
T Consensus       156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~--~--~~~~v~~v~wspdg~~lasg------------------s~d  213 (434)
T 2oit_A          156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL--P--STVAVTSVCWSPKGKQLAVG------------------KQN  213 (434)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE--C--GGGCEEEEEECTTSSCEEEE------------------ETT
T ss_pred             EECCCCCCEEEEEECCCeEEEEEcCCCcceeecc--C--CCCceeEEEEcCCCCEEEEE------------------cCC
Confidence            99996466665 4545568889988774321111  1  12357889999999956555                  235


Q ss_pred             ceEEEEeCCCCcEEEEeCCCC-------CCceEEEccCCCEEEEEecCC------CEEEEEEcCC
Q 018242          181 GRLMKYDPATKQVTVLLGNLS-------FPNGVALSEDGNYILLAETTS------CRILRYWLKT  232 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~-------~p~gia~~~d~~~l~v~~~~~------~~i~~~~~~~  232 (359)
                      +.|..||.+......+.....       ....+++++++..+......+      ..+..|++..
T Consensus       214 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          214 GTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             SCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             CcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            679999987322323321111       235677887775443434333      2377888754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.91  E-value=0.0047  Score=57.15  Aligned_cols=179  Identities=13%  Similarity=0.103  Sum_probs=100.2

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .++++  ++++++++..++.|..||..+++...                    .+.........+.++  ++.++.+...
T Consensus       177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--------------------~~~~h~~~v~~l~~~--~~~l~s~s~d  232 (435)
T 1p22_A          177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--------------------TLIHHCEAVLHLRFN--NGMMVTCSKD  232 (435)
T ss_dssp             EEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--------------------EECCCCSCEEEEECC--TTEEEEEETT
T ss_pred             EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--------------------EEcCCCCcEEEEEEc--CCEEEEeeCC
Confidence            34444  77778899999999999998764322                    112222334566665  4567666666


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +.|..+|..++..........+ ....+..+.+  ++++++.+                  ...+.|..+|..+++....
T Consensus       233 g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~s~------------------~~dg~i~vwd~~~~~~~~~  291 (435)
T 1p22_A          233 RSIAVWDMASPTDITLRRVLVG-HRAAVNVVDF--DDKYIVSA------------------SGDRTIKVWNTSTCEFVRT  291 (435)
T ss_dssp             SCEEEEECSSSSCCEEEEEECC-CSSCEEEEEE--ETTEEEEE------------------ETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEeCCCCCCceeeeEecC-CCCcEEEEEe--CCCEEEEE------------------eCCCeEEEEECCcCcEEEE
Confidence            6688889876543211111111 1123455665  56635444                  2356799999887765433


Q ss_pred             -eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          197 -LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       197 -~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                       .........+++  +++ ++++...++.|..||+....  ....+.........+++  +|++.++....+
T Consensus       292 ~~~~~~~v~~~~~--~~~-~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg  356 (435)
T 1p22_A          292 LNGHKRGIACLQY--RDR-LVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRF--DNKRIVSGAYDG  356 (435)
T ss_dssp             EECCSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEC--CSSEEEEEETTS
T ss_pred             EcCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCCCC--EEEEEeCCcCcEEEEEe--cCCEEEEEeCCC
Confidence             233333445555  455 56666677899999986532  11222222222344555  566555444444

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.88  E-value=0.0003  Score=66.78  Aligned_cols=123  Identities=19%  Similarity=0.298  Sum_probs=76.8

Q ss_pred             CCCCCceEEEcc-CCCeeEEe-cC---------------------CCEEEEEEcCCc-------ceEEEeecCCCCCCCC
Q 018242           32 GAIGPESLAFDA-LGEGPYTG-VS---------------------DGRIIKWHQDQR-------RWLHFARTSPNRDGCE   81 (359)
Q Consensus        32 ~~~~p~~i~~~~-~G~~l~~~-~~---------------------~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~   81 (359)
                      .+.+||+++++| +|. +|++ ++                     .|.|++|.+..+       +|..|....+ +....
T Consensus       382 ~mdRpEdi~v~p~~g~-vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~-p~~~~  459 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQ-VYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGN-PSVHA  459 (592)
T ss_dssp             CEECEEEEEECTTTCC-EEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCC-TTTST
T ss_pred             cccCccceeEcCCCCE-EEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccC-Ccccc
Confidence            346899999998 577 6654 32                     278999987532       2444443211 11000


Q ss_pred             CC--cccccccccccCCcceEEEEecCCCeEEEE-eCC------------CcEEEEeCCCCeEEEEeecCCCccccccce
Q 018242           82 GA--YEYDHAAKEHICGRPLGLCFNKTNGDLYIA-DAY------------FGLLKVGPEGGLATAVATQSEGIPFRFCNS  146 (359)
Q Consensus        82 ~~--~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (359)
                      +.  ++..-+........|..|+|++ +|+||++ +..            +.++++++++++++.+....   ....+++
T Consensus       460 ~~~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---~~aEpnG  535 (592)
T 4a9v_A          460 GTPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---IGCEVTG  535 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---TTCEEEE
T ss_pred             cccccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---CCccccC
Confidence            00  0000000112346689999999 8999995 431            25899999989887766421   2346899


Q ss_pred             EEEeCCCCEEEEEe
Q 018242          147 LDIDQSTGIIYFTD  160 (359)
Q Consensus       147 l~~d~~g~~l~v~d  160 (359)
                      ++++||+++|||+.
T Consensus       536 iafSPD~ktLfV~v  549 (592)
T 4a9v_A          536 ISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             CEECCCCCEEEEEE
Confidence            99999999999984

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=97.81  E-value=0.0038  Score=55.95  Aligned_cols=152  Identities=19%  Similarity=0.149  Sum_probs=86.8

Q ss_pred             eEEEcc---CCCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           38 SLAFDA---LGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        38 ~i~~~~---~G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .+++.+   +|.++..+..++.|..||.++++. +++...                  .........++|+| ++.+.++
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~------------------~~~v~~v~~vafSp-dG~~lvs  243 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID------------------DSYQASVCHKAYSE-MGLLFIV  243 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC------------------C---CCCEEEEEEE-TTEEEEE
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC------------------CcceeeeEEEEECC-CCCEEEE
Confidence            455665   678677778999999999998753 333100                  00011234567888 6776643


Q ss_pred             eC------------C-CcEEEEeCCCCeEEEEee-cCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          114 DA------------Y-FGLLKVGPEGGLATAVAT-QSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       114 ~~------------~-~~i~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      ..            . ..|..+++++++...... ..+ +... .  -+..+.+|. +.++                 +.
T Consensus       244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~--~lsg~~sg~-~lAS-----------------gS  302 (356)
T 2w18_A          244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-R--FLEGDVKDH-CAAA-----------------IL  302 (356)
T ss_dssp             EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-C--EEEEEEETT-EEEE-----------------EE
T ss_pred             eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-e--eEccccCCC-EEEE-----------------Ec
Confidence            11            1 236667888876532211 001 1100 0  112222344 3333                 22


Q ss_pred             CCceEEEEeCCCCcEEEEeC-CCCCCc-eEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          179 KTGRLMKYDPATKQVTVLLG-NLSFPN-GVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~-~~~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      ..+.|..+|..+++...... +...+. .++|+|||++ +++.+.+++|..|+.
T Consensus       303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence            35679999999887655433 333334 5899999984 566678899999984

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.81  E-value=0.028  Score=54.45  Aligned_cols=177  Identities=12%  Similarity=0.027  Sum_probs=91.3

Q ss_pred             ceEEEccCCCe----eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           37 ESLAFDALGEG----PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        37 ~~i~~~~~G~~----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .++++.+.+..    +|+.+.++.|+.+|..+++...-.......            ........|   .+.  ++.+|+
T Consensus       109 ~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~------------~~~~~~ssP---~v~--~g~V~v  171 (599)
T 1w6s_A          109 RGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK------------VGSTLTIAP---YVV--KDKVII  171 (599)
T ss_dssp             CCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG------------GTCBCCSCC---EEE--TTEEEE
T ss_pred             cceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC------------ccceeecCC---EEE--CCEEEE
Confidence            35666433333    888888899999999888654432111000            000111122   122  678888


Q ss_pred             EeC------CCcEEEEeCCCCeEEEEeecCCCcc---------c----------------------cc--c-ceEEEeCC
Q 018242          113 ADA------YFGLLKVGPEGGLATAVATQSEGIP---------F----------------------RF--C-NSLDIDQS  152 (359)
Q Consensus       113 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~~---------~----------------------~~--~-~~l~~d~~  152 (359)
                      +..      .+.|+.+|.++|+..-.........         .                      ..  . ..+++|++
T Consensus       172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~  251 (599)
T 1w6s_A          172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG  251 (599)
T ss_dssp             CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred             EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence            753      3458999999888643222111100         0                      00  0 13578877


Q ss_pred             CCEEEEEeCCC-ccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCC-------CCce-EEEc---cCCC--EEEEE
Q 018242          153 TGIIYFTDSSS-QFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS-------FPNG-VALS---EDGN--YILLA  218 (359)
Q Consensus       153 g~~l~v~d~~~-~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-------~p~g-ia~~---~d~~--~l~v~  218 (359)
                      .+.+|++.... .|......   ......+.|+.+|+++++.........       .+.. +.++   .+|+  .+++.
T Consensus       252 ~g~vy~g~g~~~p~~~~~r~---gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~  328 (599)
T 1w6s_A          252 TNLIYFGTGNPAPWNETMRP---GDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTH  328 (599)
T ss_dssp             TTEEEEECCCCSCSCGGGSC---SCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEeCCCCccccCcccC---CCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEE
Confidence            66689885321 11110000   001123579999999998876432211       1111 2222   3553  34555


Q ss_pred             ecCCCEEEEEEcCCC
Q 018242          219 ETTSCRILRYWLKTS  233 (359)
Q Consensus       219 ~~~~~~i~~~~~~~~  233 (359)
                      ...++.++.+|....
T Consensus       329 ~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          329 PDRNGIVYTLDRTDG  343 (599)
T ss_dssp             ECTTSEEEEEETTTC
T ss_pred             ECCCcEEEEEECCCC
Confidence            566778888886543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.81  E-value=0.0022  Score=60.19  Aligned_cols=157  Identities=14%  Similarity=0.156  Sum_probs=78.7

Q ss_pred             cceEEEEecCCCeEEEEeCC------------------CcEEEEeCCCCeE--E-EEee--cC----------CCccccc
Q 018242           97 RPLGLCFNKTNGDLYIADAY------------------FGLLKVGPEGGLA--T-AVAT--QS----------EGIPFRF  143 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~------------------~~i~~~~~~~~~~--~-~~~~--~~----------~~~~~~~  143 (359)
                      ....|+|++ +|.|||+...                  +.|+|+++++...  . .+..  ++          -...+..
T Consensus       140 ~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          140 LGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             CEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             cCCcEeECC-CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            345799999 8999998421                  1399999987310  0 0000  00          0113468


Q ss_pred             cceEEEeCC-----CC-EEEEEeCCCccccccceeeeeecCCCc---eEEEEeCCCCcEEEEeCCCCCCceEEEccC---
Q 018242          144 CNSLDIDQS-----TG-IIYFTDSSSQFQRRNHISVILSGDKTG---RLMKYDPATKQVTVLLGNLSFPNGVALSED---  211 (359)
Q Consensus       144 ~~~l~~d~~-----g~-~l~v~d~~~~~~~~~~~~~~~~~~~~g---~v~~~d~~~~~~~~~~~~~~~p~gia~~~d---  211 (359)
                      |.++++|++     |+ ++|.+|.............+..+...|   -++.+.+.         ....|.|+++...   
T Consensus       219 p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~---------~g~Ap~G~~~Y~G~~f  289 (463)
T 2wg3_C          219 PGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSLLEFKPF---------SNGPLVGGFVYRGCQS  289 (463)
T ss_dssp             CCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCCEECCC-------------CEEEEEECCCSSC
T ss_pred             cceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCC---------CCccccceEEEeCCCC
Confidence            999999997     54 266677521110001111110111111   01111110         1135677777432   


Q ss_pred             ----CCEEEEEecCCCEEEEEEcCCCCCc-ceeEee---------cCCCCCCceEECCCCCEEEEEec
Q 018242          212 ----GNYILLAETTSCRILRYWLKTSKAG-TIEIVA---------QLPGFPDNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       212 ----~~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~---------~~~~~p~~i~~d~~G~lwv~~~~  265 (359)
                          ++ +++++.. ++|+++.++..... ..+.+.         ...+.|.++.++++|.||+++..
T Consensus       290 P~~~g~-~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~  355 (463)
T 2wg3_C          290 ERLYGS-YVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSS  355 (463)
T ss_dssp             TTTTTC-EEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEES
T ss_pred             hhhcce-EEEecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEecc
Confidence                33 6777665 78998887654222 222221         12345788999999999999873

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=97.80  E-value=0.013  Score=52.53  Aligned_cols=158  Identities=9%  Similarity=-0.060  Sum_probs=80.8

Q ss_pred             EEEEec--CCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242          100 GLCFNK--TNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       100 gi~~~~--~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      .++|++  .++.++++...+ .|..+|.++++....... ..........++++|+|+ +.++-+...     ....+..
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g-~~~~v~~v~~vafSpdG~-~lvs~s~~~-----~~w~laS  255 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI-DDSYQASVCHKAYSEMGL-LFIVLSHPC-----AKESESL  255 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC---CCCEEEEEEETTE-EEEEEC---------------
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC-CCcceeeeEEEEECCCCC-EEEEeccCC-----Ccceeec
Confidence            445554  356777764444 477789998875332221 111223556678999998 555422100     0001123


Q ss_pred             cCCCceEEEEeCCCCcEEEEe----CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCC-ce
Q 018242          177 GDKTGRLMKYDPATKQVTVLL----GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD-NI  251 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~----~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~i  251 (359)
                      +...+.|..+|+.+++.....    .......-+..+.++. +.++.+.+++|..||+...+.  ...+......+. .+
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~v  332 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFV  332 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEE
T ss_pred             cCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEE
Confidence            345667888999887654322    1111111111222233 567777889999999865421  122222112233 37


Q ss_pred             EECCCCCEEEEEecCC
Q 018242          252 KRSPRGGFWVGIHSRR  267 (359)
Q Consensus       252 ~~d~~G~lwv~~~~~~  267 (359)
                      ++.++|++.++....+
T Consensus       333 afSPDG~~LaSGS~D~  348 (356)
T 2w18_A          333 KWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             EECSSSSEEEEECTTS
T ss_pred             EECCCCCEEEEEECCC
Confidence            8999998776555444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.76  E-value=0.0033  Score=62.11  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=50.7

Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCC--CceEECCCC
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP--DNIKRSPRG  257 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p--~~i~~d~~G  257 (359)
                      .+.|..+|+.+++............+..+..+++.+|+. +.++.++.||....+..  -.+ .++...  .-+.+..+|
T Consensus       456 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~l--w~~-~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          456 FGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKL--WEA-PTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEE--EEE-ECSSCCCSCCEEEEETT
T ss_pred             ccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCCcee--eee-eCCCCcccCCEEEEeCC
Confidence            378999999999877644332234555666777777776 67889999997654221  111 122111  125555688


Q ss_pred             CEEEEEec
Q 018242          258 GFWVGIHS  265 (359)
Q Consensus       258 ~lwv~~~~  265 (359)
                      +.|++...
T Consensus       532 ~~~v~~~~  539 (677)
T 1kb0_A          532 RQYVSVAV  539 (677)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            88886643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.75  E-value=0.024  Score=56.07  Aligned_cols=32  Identities=16%  Similarity=0.195  Sum_probs=24.4

Q ss_pred             EEEEecCCCeEEEEeCCC-------------------cEEEEeCCCCeEEE
Q 018242          100 GLCFNKTNGDLYIADAYF-------------------GLLKVGPEGGLATA  131 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~-------------------~i~~~~~~~~~~~~  131 (359)
                      .++++++.+.+|++....                   .|+.+|.++|+..-
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W  289 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVW  289 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeE
Confidence            578898788888886432                   28999999998654

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.74  E-value=0.0034  Score=57.50  Aligned_cols=152  Identities=11%  Similarity=0.070  Sum_probs=85.9

Q ss_pred             eEEEcc---CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc-------ccCCcceEEEEecC-
Q 018242           38 SLAFDA---LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE-------HICGRPLGLCFNKT-  106 (359)
Q Consensus        38 ~i~~~~---~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~gi~~~~~-  106 (359)
                      +|++++   .+. +|+++..++|++.+..+..|+.+......      |...   ...       ......+.|++++. 
T Consensus       119 ~l~~~~~~~~~~-l~~g~~~ggl~~S~DgG~tW~~~~~~~~~------p~~~---~~~~~~~~g~~~~~~i~~i~~d~~~  188 (394)
T 3b7f_A          119 WLTPGHASEPGT-WYAGTSPQGLFRSTDHGASWEPVAGFNDH------PMRR---AWTGGEQDGTPDGPKMHSILVDPRD  188 (394)
T ss_dssp             EEEECCTTSTTC-EEEEEETTEEEEESSTTSBCEECHHHHTC------TTHH---HHHCCC----CCCCEEEEEEECTTC
T ss_pred             EEEeCCCCCCCE-EEEEecCCcEEEEcCCCCCeEECcCccCC------cccc---ccccccccCCCCCCceeEEEECCCC
Confidence            577885   455 99988888999997777667765311000      0000   000       00112357888863 


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCC--cc------ccccceEEEeCC--CCEEEEEeCCCccccccceeeeee
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEG--IP------FRFCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~--~~------~~~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      .+.+|++...++|++.+-.+..++.+......  .+      ...+..|+++++  +. ||++.                
T Consensus       189 ~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~-l~vg~----------------  251 (394)
T 3b7f_A          189 PKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI-LYQQN----------------  251 (394)
T ss_dssp             TTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE-EEEEE----------------
T ss_pred             CCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCE-EEEEc----------------
Confidence            47899997666788876666666554221110  00      123677899986  55 99983                


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCCCCC-----CceEEEcc-CCCEEEEEe
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGNLSF-----PNGVALSE-DGNYILLAE  219 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~~~~-----p~gia~~~-d~~~l~v~~  219 (359)
                         .++|++.+..+...+.+...+..     ...++++| +.+.+|+..
T Consensus       252 ---~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t  297 (394)
T 3b7f_A          252 ---HCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFP  297 (394)
T ss_dssp             ---TTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEE
T ss_pred             ---CCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEe
Confidence               23688887665555544322222     13466665 344577763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.73  E-value=0.022  Score=51.91  Aligned_cols=151  Identities=13%  Similarity=-0.054  Sum_probs=84.4

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec-------CCCeEEEEeC-
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK-------TNGDLYIADA-  115 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-------~~g~l~v~~~-  115 (359)
                      +++++..+..++.|..||..+++........               .+.........++++|       .+++++++.. 
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~---------------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLG---------------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEEC---------------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeec---------------ccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            4455667788899999998876433221000               1222334567888875       2566666543 


Q ss_pred             CCcEEEEeCCCCeE-EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          116 YFGLLKVGPEGGLA-TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       116 ~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      .+.|..+|..++.. ..+.. .    ...+..++++|++..+.++-                 ...+.|..||..+++..
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~-~----~~~v~~v~~~p~~~~~l~~~-----------------~~d~~v~~wd~~t~~~~  222 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYP-L----SSPGISVQFRPSNPNQLIVG-----------------ERNGNIRIFDWTLNLSA  222 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEE-C----SSCEEEEEEETTEEEEEEEE-----------------ETTSEEEEEETTCCC--
T ss_pred             CCeEEEEECCCCceeeeecC-C----CCCcEEEEECCCCCceEEec-----------------CCCCEEEEEECCCCccc
Confidence            34577888765543 22222 1    12456789999875344441                 23456777887665432


Q ss_pred             EEe--------------------------CCCCCCceEEEc-cCCCEEEEEecCCCEEEEEEcCC
Q 018242          195 VLL--------------------------GNLSFPNGVALS-EDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       195 ~~~--------------------------~~~~~p~gia~~-~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ...                          ........+++. +|++. +++...++.+..|++..
T Consensus       223 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~-l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          223 EENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSG-ILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             --------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCE-EEEECTTSEEEEEEC--
T ss_pred             ccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCE-EEEEeCCCCEEEEECcc
Confidence            110                          001123456665 78874 55667788999999754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.041  Score=54.18  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=72.8

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-  116 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-  116 (359)
                      +++++ +++ +|+++.++.|+.+|..+++...-......       .     ........|   .+.  ++.+|++... 
T Consensus       112 ~~~~~-~~~-v~v~~~dg~l~alD~~tG~~~W~~~~~~~-------~-----~~~~~~~~P---~v~--~~~v~vg~~~~  172 (668)
T 1kv9_A          112 GVALW-GDK-VYVGTLDGRLIALDAKTGKAIWSQQTTDP-------A-----KPYSITGAP---RVV--KGKVIIGNGGA  172 (668)
T ss_dssp             CCEEE-BTE-EEEECTTSEEEEEETTTCCEEEEEECSCT-------T-----SSCBCCSCC---EEE--TTEEEECCBCT
T ss_pred             ceEEE-CCE-EEEEcCCCEEEEEECCCCCEeeeeccCCC-------C-----CcceecCCC---EEE--CCEEEEeCCCC
Confidence            34553 445 88888889999999988764432211100       0     000111122   122  6788887532 


Q ss_pred             -----CcEEEEeCCCCeEEEEeecCCCccc---------------------------cccceEEEeCCCCEEEEEeCCCc
Q 018242          117 -----FGLLKVGPEGGLATAVATQSEGIPF---------------------------RFCNSLDIDQSTGIIYFTDSSSQ  164 (359)
Q Consensus       117 -----~~i~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~l~~d~~g~~l~v~d~~~~  164 (359)
                           +.|+.+|.++|+..-.....+..+.                           ..-..+++|++++.+|++.....
T Consensus       173 ~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~  252 (668)
T 1kv9_A          173 EYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS  252 (668)
T ss_dssp             TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred             CcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence                 3489999998886533221111000                           00124688987766888843210


Q ss_pred             -ccccccee-eeeecCCCceEEEEeCCCCcEEEEe
Q 018242          165 -FQRRNHIS-VILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       165 -~~~~~~~~-~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                       |... ... .....-..+.|+.+|+++|+.....
T Consensus       253 ~w~~~-~~~~~~gd~l~~~~v~AlD~~tG~~~W~~  286 (668)
T 1kv9_A          253 PWNRE-VRSPGGGDNLYLSSILAIRPDTGKLAWHY  286 (668)
T ss_dssp             SSCHH-HHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             ccccC-CCCCCCCCceeeeeEEEEcCCCCceeeEe
Confidence             1100 000 0000111246999999999887643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.70  E-value=0.0019  Score=60.14  Aligned_cols=167  Identities=10%  Similarity=-0.073  Sum_probs=89.3

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCC-----------CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccc
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEG-----------GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~  166 (359)
                      ..-++++++.+.++++.. +++..++...           ...........-.....+..++++++|++|.++..     
T Consensus        39 ~n~lavs~~~~~l~~~~~-dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~-----  112 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGA-SGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM-----  112 (434)
T ss_dssp             CBCEEEETTTTEEEEEET-TEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE-----
T ss_pred             ccEEEEecCCCEEEEECC-CEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe-----
Confidence            346888886677777654 4555543211           01110000000000124778999999996665210     


Q ss_pred             cccceeeeeecCCCceEEEEeCCCC-----c-------EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC
Q 018242          167 RRNHISVILSGDKTGRLMKYDPATK-----Q-------VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK  234 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~~~-----~-------~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~  234 (359)
                               .+...+.|..||..++     .       ......+......++++|+...++++...++.|..||+....
T Consensus       113 ---------sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~  183 (434)
T 2oit_A          113 ---------SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV  183 (434)
T ss_dssp             ---------ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred             ---------ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence                     0123456777876432     0       111112234567899999844467777788999999986541


Q ss_pred             CcceeEeecCCCCCCceEECCCCCEEEEEecCCCccccccccCCccceeeec
Q 018242          235 AGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIK  286 (359)
Q Consensus       235 ~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~  286 (359)
                        ..............++++++|+..++....+.     +..++..++....
T Consensus       184 --~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-----v~iwd~~~~~~~~  228 (434)
T 2oit_A          184 --KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-----VVQYLPTLQEKKV  228 (434)
T ss_dssp             --EEEEEECGGGCEEEEEECTTSSCEEEEETTSC-----EEEECTTCCEEEE
T ss_pred             --ceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-----EEEEccCCccccc
Confidence              11111111233567899999975554444443     5556554444433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.69  E-value=0.0074  Score=59.82  Aligned_cols=147  Identities=12%  Similarity=-0.003  Sum_probs=83.3

Q ss_pred             cCCCeEEEEe-CC----CcEEEEeCCCCeEEEEeecC--CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          105 KTNGDLYIAD-AY----FGLLKVGPEGGLATAVATQS--EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       105 ~~~g~l~v~~-~~----~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ++++.++... ..    ..|++.+..+++.+.+.+..  .........++.++|||++|.++...             .+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~-------------~G  147 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA-------------SG  147 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEE-------------TT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcC-------------CC
Confidence            4355555542 21    13788887766655554321  11111245678999999966555211             01


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC---------------CEEEEEEcCCCCCcceeEee
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS---------------CRILRYWLKTSKAGTIEIVA  242 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~---------------~~i~~~~~~~~~~~~~~~~~  242 (359)
                      .....|+.+|.++++............+++++|||+.++++....               ..|+++++..+.......+.
T Consensus       148 ~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~  227 (710)
T 2xdw_A          148 SDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE  227 (710)
T ss_dssp             CSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred             CceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence            122379999999887654321112246799999999888776543               24999998654322222222


Q ss_pred             cC--CCCCCceEECCCCC-EEEEEe
Q 018242          243 QL--PGFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       243 ~~--~~~p~~i~~d~~G~-lwv~~~  264 (359)
                      ..  +....++.++++|+ |.++..
T Consensus       228 ~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          228 FPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             CTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            21  22234678899997 444443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.69  E-value=0.0019  Score=53.70  Aligned_cols=115  Identities=17%  Similarity=0.041  Sum_probs=66.8

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccc-cccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAK-EHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~~~  105 (359)
                      ++-.++......++++|+|. ||+. .++.+++.++.+.+-.......            .  .+ ...-+.-..+.+|+
T Consensus        34 ~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~------------t--~IG~~Gw~~F~a~~fD~   97 (236)
T 1tl2_A           34 LIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRA------------K--KIGNGGWNQFQFLFFDP   97 (236)
T ss_dssp             EEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHC------------E--EEECSCGGGCSEEEECT
T ss_pred             ccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCcccccccc------------c--EecccccccceEEEECC
Confidence            33333467788999999999 7766 7789999998652100000000            0  00 00001134688998


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCccccccceEEEeCCCCEEEEEe
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAVA---TQSEGIPFRFCNSLDIDQSTGIIYFTD  160 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~d~~g~~l~v~d  160 (359)
                       +|.||+++ .+.|+|+++.+..-....   ..+....-.....|.++|+|. ||..+
T Consensus        98 -~G~LYav~-dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~  152 (236)
T 1tl2_A           98 -NGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH  152 (236)
T ss_dssp             -TSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE
T ss_pred             -CCCEEEeC-CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe
Confidence             99999994 356999987432111110   000011123457899999999 99985

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.63  E-value=0.0051  Score=60.83  Aligned_cols=147  Identities=12%  Similarity=0.015  Sum_probs=83.1

Q ss_pred             cCCCeEEEEeC-C----CcEEEEeCCCCeEEEEeecCC--CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          105 KTNGDLYIADA-Y----FGLLKVGPEGGLATAVATQSE--GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       105 ~~~g~l~v~~~-~----~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      ++++.++.... .    ..|++.+..++..+.+.+...  ........++.++|||++|.++...             .+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~-------------~G  143 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKP-------------NA  143 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEE-------------TT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECC-------------CC
Confidence            43556655532 2    237888877776655543211  0111245678999999966555211             11


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCC--CceEEEccCCCEEEEEecCC------------CEEEEEEcCCCCCcceeEeec
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSF--PNGVALSEDGNYILLAETTS------------CRILRYWLKTSKAGTIEIVAQ  243 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~--p~gia~~~d~~~l~v~~~~~------------~~i~~~~~~~~~~~~~~~~~~  243 (359)
                      +....|+.+|.++++... ......  ..+++++|||+.++.+....            ..|+++++..+.......+..
T Consensus       144 ~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~  222 (695)
T 2bkl_A          144 ADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER  222 (695)
T ss_dssp             CSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC
T ss_pred             CceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec
Confidence            223579999999887530 111112  26899999999877776432            349999986543222222222


Q ss_pred             C--CCCCCceEECCCCC-EEEEEec
Q 018242          244 L--PGFPDNIKRSPRGG-FWVGIHS  265 (359)
Q Consensus       244 ~--~~~p~~i~~d~~G~-lwv~~~~  265 (359)
                      .  +....++.++++|+ |.++...
T Consensus       223 ~~~~~~~~~~~~SpDG~~l~~~~~~  247 (695)
T 2bkl_A          223 TGDPTTFLQSDLSRDGKYLFVYILR  247 (695)
T ss_dssp             CCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEeC
Confidence            1  11233578899996 5554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.63  E-value=0.0016  Score=58.13  Aligned_cols=160  Identities=7%  Similarity=-0.072  Sum_probs=91.6

Q ss_pred             CCCceEEEccCCCeeE-Eec--------CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           34 IGPESLAFDALGEGPY-TGV--------SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~-~~~--------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      ....++.+  ||+.++ +..        ..+.|+.+|.++++.+.+                         .....+.++
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------------------------~~~~~~~~S   67 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------------------------ENATMPRIS   67 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------------------------ESCEEEEEC
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------------------------ccCCCeEEC
Confidence            34456666  776443 321        146788999887643221                         224567899


Q ss_pred             cCCCeEEEEeCC---C--cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccc-------ccee
Q 018242          105 KTNGDLYIADAY---F--GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR-------NHIS  172 (359)
Q Consensus       105 ~~~g~l~v~~~~---~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~-------~~~~  172 (359)
                      |++..|+++...   .  .|+.++.++++...+...    + . +..+.++|||++|+++.........       .+..
T Consensus        68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~----~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA----K-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE----S-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC----C-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            955556555322   1  388999988876655331    1 1 6788999999977776321000000       0000


Q ss_pred             e--eeecCCCceEEEEeCCCCcE-EEEeCCCCCCceEEEccCCCEEEEEecC--------CCEEEEEE
Q 018242          173 V--ILSGDKTGRLMKYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAETT--------SCRILRYW  229 (359)
Q Consensus       173 ~--~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~p~gia~~~d~~~l~v~~~~--------~~~i~~~~  229 (359)
                      .  -........|++++..+++. +.+.. . ....++++||| .+|.+...        ...|+.++
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence            0  00001134699999988876 54433 2 66788999999 66666443        33677777

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.57  E-value=0.065  Score=51.79  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=25.0

Q ss_pred             eEEEEECC-CCCEEEEEEccCCceeeceEEEEEeCCEEEEec
Q 018242          306 GMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIGS  346 (359)
Q Consensus       306 ~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig~  346 (359)
                      ..+.++|. .|+++..+..+.+.. ..+. ....+|++||+.
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~-a~P~-~y~~~G~qYv~~  546 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIV-SPPI-TWEQDGEQYLGV  546 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCCcc-cCce-EEEECCEEEEEE
Confidence            67888884 588888887655432 2222 223588989884

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.47  E-value=0.00018  Score=65.67  Aligned_cols=187  Identities=14%  Similarity=0.063  Sum_probs=79.4

Q ss_pred             CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe-CCCcEEEEe
Q 018242           45 GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD-AYFGLLKVG  123 (359)
Q Consensus        45 G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~-~~~~i~~~~  123 (359)
                      +.++|+++.++.|+.||..+++...-..                  .......|    +.. ++.++++. ..+.|+.+|
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~------------------~~~~~s~p----~~~-~g~~~v~~s~dg~l~a~d   65 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLK------------------EDPVLQVP----THV-EEPAFLPDPNDGSLYTLG   65 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEE------------------CCCSCCCC----------CCEEECTTTCCEEEC-
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEec------------------CCCceecc----eEc-CCCEEEEeCCCCEEEEEE
Confidence            4459999999999999998876443211                  00010111    223 56666663 344688999


Q ss_pred             CCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCC
Q 018242          124 PEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP  203 (359)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  203 (359)
                      .++|+...... .. .+.......++..++. +|++                  ...+.|+.+|+++|+.......   +
T Consensus        66 ~~tG~~~w~~~-~~-~~~~~~~sp~~~~~~~-v~~g------------------~~dg~v~a~D~~tG~~~w~~~~---~  121 (369)
T 2hz6_A           66 SKNNEGLTKLP-FT-IPELVQASPCRSSDGI-LYMG------------------KKQDIWYVIDLLTGEKQQTLSS---A  121 (369)
T ss_dssp             ----CCSEECS-CC-HHHHHTTCSCC------CCCC------------------EEEEEEEEECCC--------------
T ss_pred             CCCCceeeeee-cc-CccccccCceEecCCE-EEEE------------------eCCCEEEEEECCCCcEEEEecC---C
Confidence            87775422111 11 0000001112223555 7765                  2245799999998876543221   1


Q ss_pred             ceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECC----CCCEEEEEecCCCccccccccCC-
Q 018242          204 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP----RGGFWVGIHSRRKGISKLVLSFP-  278 (359)
Q Consensus       204 ~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~----~G~lwv~~~~~~~~~~~~~~~~~-  278 (359)
                      ....++|+++.+|+.. .++.|+.||....+..........    ...+++.    ++.+|+++..+.      +..++ 
T Consensus       122 ~~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~------v~a~d~  190 (369)
T 2hz6_A          122 FADSLSPSTSLLYLGR-TEYTITMYDTKTRELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGL------VVTVDS  190 (369)
T ss_dssp             -----------EEEEE-EEEEEECCCSSSSSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCE------EEEECT
T ss_pred             CcccccccCCEEEEEe-cCCEEEEEECCCCCEEEeEecccc----cCccccCCccccceEEEECCCCE------EEEEEC
Confidence            1234456666677764 457899998765433222111111    1122322    367888765433      55554 


Q ss_pred             ccceeeecCCc
Q 018242          279 WIGNVLIKLPI  289 (359)
Q Consensus       279 ~~g~~~~~~~~  289 (359)
                      .+|+.+.+...
T Consensus       191 ~tG~~~W~~~~  201 (369)
T 2hz6_A          191 ESGDVLWIQNY  201 (369)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CCCcEEEEecC
Confidence            47777665443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.46  E-value=0.025  Score=55.92  Aligned_cols=82  Identities=21%  Similarity=0.359  Sum_probs=49.4

Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCC--CCCceEECCC
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPG--FPDNIKRSPR  256 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~--~p~~i~~d~~  256 (359)
                      .+.|..+|+.+++............+-.+...+..+|+. +.++.|+.||.+..+.    .+. .++.  ...-+.+..+
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~----lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEK----LWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCE----EEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCcc----ceeeeCCCCcccCceEEEEC
Confidence            377999999999877543222212333555566656665 6788999999765422    121 2221  1122666678


Q ss_pred             CCEEEEEecC
Q 018242          257 GGFWVGIHSR  266 (359)
Q Consensus       257 G~lwv~~~~~  266 (359)
                      |+.||+...+
T Consensus       529 G~qyv~~~~G  538 (689)
T 1yiq_A          529 GEQYVTFMAG  538 (689)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999876543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.43  E-value=0.058  Score=47.91  Aligned_cols=178  Identities=11%  Similarity=0.086  Sum_probs=93.7

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+|.+++ ++ +|+....+.|++-.-.+..|+.....                  ....+.+..|++.+ ++++|++...
T Consensus        83 ~~i~~~~-~~-~~~~g~~g~i~~S~DgG~tW~~~~~~------------------~~~~~~~~~i~~~~-~~~~~~~~~~  141 (327)
T 2xbg_A           83 NSVSFQG-NE-GWIVGEPPIMLHTTDGGQSWSQIPLD------------------PKLPGSPRLIKALG-NGSAEMITNV  141 (327)
T ss_dssp             EEEEEET-TE-EEEEEETTEEEEESSTTSSCEECCCC------------------TTCSSCEEEEEEEE-TTEEEEEETT
T ss_pred             EEEEecC-Ce-EEEEECCCeEEEECCCCCCceECccc------------------cCCCCCeEEEEEEC-CCCEEEEeCC
Confidence            3677764 55 66655557777754334445543210                  01112356777766 7888888755


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC-CCcEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA-TKQVTV  195 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~  195 (359)
                      ++|++-.-.+...+.+....    ...+..++++++++ +|+..                  ..+.+++-+.. +...+.
T Consensus       142 g~v~~S~DgG~tW~~~~~~~----~~~~~~~~~~~~~~-~~~~g------------------~~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          142 GAIYRTKDSGKNWQALVQEA----IGVMRNLNRSPSGE-YVAVS------------------SRGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             CCEEEESSTTSSEEEEECSC----CCCEEEEEECTTSC-EEEEE------------------TTSSEEEEECTTCSSCEE
T ss_pred             ccEEEEcCCCCCCEEeecCC----CcceEEEEEcCCCc-EEEEE------------------CCCcEEEEeCCCCCceeE
Confidence            55766543344555543211    12456788899988 77662                  13457765433 233333


Q ss_pred             EeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCC-----CceEECCCCCEEEEEec
Q 018242          196 LLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFP-----DNIKRSPRGGFWVGIHS  265 (359)
Q Consensus       196 ~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p-----~~i~~d~~G~lwv~~~~  265 (359)
                      +... ......++++++++ +|+.. ..+.+++...+..     +.+..  .+.++     ..+++++++.+|++...
T Consensus       199 ~~~~~~~~~~~~~~~~~g~-~~~~~-~~G~~~~s~~D~G-----~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~  269 (327)
T 2xbg_A          199 HNRTTSRRLHNMGFTPDGR-LWMIV-NGGKIAFSDPDNS-----ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA  269 (327)
T ss_dssp             EECCSSSCEEEEEECTTSC-EEEEE-TTTEEEEEETTEE-----EEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST
T ss_pred             CCCCCCCccceeEECCCCC-EEEEe-CCceEEEecCCCC-----CeeEeccCCcccCCcceEEEEecCCCEEEEEeCC
Confidence            3221 22345777888876 56554 3456665432211     12222  11111     23566777888887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.43  E-value=0.045  Score=52.89  Aligned_cols=82  Identities=18%  Similarity=0.135  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCC--CceEECCC
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFP--DNIKRSPR  256 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p--~~i~~d~~  256 (359)
                      .+.|+.+|+.+++............+-.+...+..+|+ .+.++.|+.||.+..+.    .+. .++...  .-+.+..+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~-g~~dg~l~A~D~~tG~~----lW~~~~~~g~~a~P~~y~~~  539 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT-GTGDGYFKAFDAKSGKE----LWKFQTGSGIVSPPITWEQD  539 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE-ECTTSEEEEEETTTCCE----EEEEECSSCCCSCCEEEEET
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE-ECCCCcEEEEECCCCCE----EEEecCCCCcccCceEEEEC
Confidence            57899999999987754322111222222234555666 45678999999765422    121 222211  12666678


Q ss_pred             CCEEEEEecC
Q 018242          257 GGFWVGIHSR  266 (359)
Q Consensus       257 G~lwv~~~~~  266 (359)
                      |+.||+...+
T Consensus       540 G~qYv~~~~G  549 (582)
T 1flg_A          540 GEQYLGVTVG  549 (582)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEcc
Confidence            9999977654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.41  E-value=0.041  Score=54.18  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=47.8

Q ss_pred             ceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCC--CCceEECCCCC
Q 018242          181 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF--PDNIKRSPRGG  258 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--p~~i~~d~~G~  258 (359)
                      +.|+.+|+.+++............+-.+...+..+|+. +.++.|+.+|.+..+..  -.+ .++..  ..-+....+|+
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG~~l--~~~-~~~~~~~~~p~~~~~~G~  513 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKGEAL--WQF-EAQSGIVAAPMTFELAGR  513 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEE--EEE-ECSSCCCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcChhh--eEe-cCCCCcccCceEEEECCE
Confidence            78999999999877543322223444555566667776 67789999997644221  111 12211  11244445788


Q ss_pred             EEEEEec
Q 018242          259 FWVGIHS  265 (359)
Q Consensus       259 lwv~~~~  265 (359)
                      +|++...
T Consensus       514 ~yva~~~  520 (668)
T 1kv9_A          514 QYVAIMA  520 (668)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8886654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.40  E-value=0.017  Score=57.57  Aligned_cols=146  Identities=9%  Similarity=0.006  Sum_probs=79.4

Q ss_pred             cCCCeEEEEe-CC----CcEEEEeCC---CCeEEEEeecCC--CccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          105 KTNGDLYIAD-AY----FGLLKVGPE---GGLATAVATQSE--GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       105 ~~~g~l~v~~-~~----~~i~~~~~~---~~~~~~~~~~~~--~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      ++++.++... ..    ..|++.+..   +++.+.+.+...  ........++.++|||++|.++...            
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~------------  183 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD------------  183 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEE------------
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC------------
Confidence            5355555542 22    236788876   666555533211  1011245678999999966555211            


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC-------------EEEEEEcCCCCCcceeEe
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC-------------RILRYWLKTSKAGTIEIV  241 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~-------------~i~~~~~~~~~~~~~~~~  241 (359)
                       .+.....|+.+|.++++............+++++|| +.++++.....             .|+++++..+.......+
T Consensus       184 -~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~  261 (741)
T 1yr2_A          184 -GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF  261 (741)
T ss_dssp             -TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred             -CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence             011124699999998876543111111257899999 88877764432             588888754432222222


Q ss_pred             ecCC--CCCCceEECCCCC-EEEEEe
Q 018242          242 AQLP--GFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       242 ~~~~--~~p~~i~~d~~G~-lwv~~~  264 (359)
                      ....  ....++.+++||+ |.++..
T Consensus       262 ~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          262 ATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             CCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             ccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            2211  1234578899997 444443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.33  E-value=0.089  Score=50.97  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=47.3

Q ss_pred             CceEEEEeCCCCcEEEEeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCC--CCceEECC
Q 018242          180 TGRLMKYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGF--PDNIKRSP  255 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~--p~~i~~d~  255 (359)
                      .|.|+.+|+.+++...... ......+ .+...+..+|+. +.++.|+.||.+..+.    .+. .++..  -.-+....
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagg~vf~g-t~dg~l~A~D~~tG~~----lW~~~l~~g~~~~P~~y~~  525 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGG-TMATAGDLVFYG-TLDGYLKARDSDTGDL----LWKFKIPSGAIGYPMTYTH  525 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEE-CTTSEEEEEETTTCCE----EEEEECSSCCCSCCEEEEE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCc-ceEecCCEEEEE-CCCCeEEEEECCCCCE----EEEeeCCCCcEeccEEEEe
Confidence            4789999999998775432 2221123 223345556764 5678999999765432    221 23221  11155556


Q ss_pred             CCCEEEEEecC
Q 018242          256 RGGFWVGIHSR  266 (359)
Q Consensus       256 ~G~lwv~~~~~  266 (359)
                      +|++||+...+
T Consensus       526 ~G~qyv~~~~G  536 (599)
T 1w6s_A          526 KGTQYVAIYYG  536 (599)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEEcc
Confidence            89999876654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.18  E-value=0.0063  Score=58.57  Aligned_cols=116  Identities=14%  Similarity=0.212  Sum_probs=74.4

Q ss_pred             cceEEEEecCCCeEEEEeCC----------------------CcEEEEeCCCCe-------EEEEee--cC---------
Q 018242           97 RPLGLCFNKTNGDLYIADAY----------------------FGLLKVGPEGGL-------ATAVAT--QS---------  136 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~----------------------~~i~~~~~~~~~-------~~~~~~--~~---------  136 (359)
                      +|-++.+++.++++|++...                      +.|++++++.+.       +..+..  ..         
T Consensus       385 RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~~  464 (592)
T 3zwu_A          385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG  464 (592)
T ss_dssp             CEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred             ccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccccc
Confidence            46789999889999998432                      238888765331       111111  00         


Q ss_pred             ------CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC--CCCCceEEE
Q 018242          137 ------EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN--LSFPNGVAL  208 (359)
Q Consensus       137 ------~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~p~gia~  208 (359)
                            ....+..|..|++|++|+ |||++.+..-....+     .......++.+++.++++..+...  .....|++|
T Consensus       465 ~~~~~~~~~~f~~PDNL~fd~~G~-LwI~eDg~~~~~~~~-----~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~f  538 (592)
T 3zwu_A          465 GSSNITPQNMFNSPDGLGFDKAGR-LWILTDGDSSNAGDF-----AGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISF  538 (592)
T ss_dssp             CCTTCCTTTCCCCEEEEEECTTCC-EEEEECCCCCCSGGG-----TTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEE
T ss_pred             cccccCCCCCccCCcceEECCCCC-EEEEecCCCcccccc-----cccccceEEEEeCCCCeEEEEEeCCCCccCcCeeE
Confidence                  012356789999999999 999976532100000     001123588899988888877643  234569999


Q ss_pred             ccCCCEEEEE
Q 018242          209 SEDGNYILLA  218 (359)
Q Consensus       209 ~~d~~~l~v~  218 (359)
                      +||+++||+.
T Consensus       539 spDg~tlfvn  548 (592)
T 3zwu_A          539 SPDQKTLFVG  548 (592)
T ss_dssp             CTTSSEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999998886

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.13  E-value=0.011  Score=49.07  Aligned_cols=136  Identities=15%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEeCCCC-------eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccc
Q 018242           97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGG-------LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN  169 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~  169 (359)
                      ....++++| +|.||.. ..+.|+++++.+.       ..+.+-.    ........+.+|++|. ||+..         
T Consensus        42 ~~~~laf~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~----~Gw~~F~a~~fD~~G~-LYav~---------  105 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGN----GGWNQFQFLFFDPNGY-LYAVS---------  105 (236)
T ss_dssp             TCSEEEECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEEC----SCGGGCSEEEECTTSC-EEEEE---------
T ss_pred             cceeEEECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecc----cccccceEEEECCCCC-EEEeC---------
Confidence            345899999 9999998 4556999998652       2122211    0122356799999999 99982         


Q ss_pred             ceeeeeecCCCceEEEEeCCCCcE-------EEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCc-----
Q 018242          170 HISVILSGDKTGRLMKYDPATKQV-------TVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-----  236 (359)
Q Consensus       170 ~~~~~~~~~~~g~v~~~d~~~~~~-------~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~-----  236 (359)
                                .|.|+++++.+..-       ..+- .+...-..+.++|+|. ||...  ++.+++.. .+....     
T Consensus       106 ----------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~-~P~~~~~~wl~  171 (236)
T 1tl2_A          106 ----------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKAL-PPVSNQDNWLA  171 (236)
T ss_dssp             ----------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEEC-CCSSTTCCHHH
T ss_pred             ----------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecC-CCCCCCccccc
Confidence                      36899999843211       1111 1223346788999996 78776  56677632 221111     


Q ss_pred             ceeEeecCCC--CCCceEECCCCCEEEEE
Q 018242          237 TIEIVAQLPG--FPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       237 ~~~~~~~~~~--~p~~i~~d~~G~lwv~~  263 (359)
                      ....+.. .+  .-.-+.++++|+||..+
T Consensus       172 ~~~~~g~-~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          172 RATKIGQ-GGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             HCEEEES-SSGGGEEEEEECTTSCEEEEE
T ss_pred             ccceecc-CCcceEEEEEECCCCcEEEEe
Confidence            0111110 11  11126689999999988

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.88  E-value=0.025  Score=54.40  Aligned_cols=123  Identities=19%  Similarity=0.271  Sum_probs=74.7

Q ss_pred             CCCCCceEEEcc-CCCeeEEecC---------------------CCEEEEEEcCCc-------ceEEEeecCCCCCCCCC
Q 018242           32 GAIGPESLAFDA-LGEGPYTGVS---------------------DGRIIKWHQDQR-------RWLHFARTSPNRDGCEG   82 (359)
Q Consensus        32 ~~~~p~~i~~~~-~G~~l~~~~~---------------------~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~   82 (359)
                      .+..||++.+++ +|.++++.++                     .|.|++|+++.+       +|..+.... .+.....
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g-~p~~~~~  460 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAG-NPSVHAG  460 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECC-CTTTSTT
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEecc-Ccccccc
Confidence            577999999997 6784444442                     268999987543       233332211 0000000


Q ss_pred             -Ccc-cccccccccCCcceEEEEecCCCeEEEEeCC-------------CcEEEEeCCCCeEEEEeecCCCccccccceE
Q 018242           83 -AYE-YDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSL  147 (359)
Q Consensus        83 -~~~-~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  147 (359)
                       +.+ ..-+.-......|..|+|++ .|+|||+...             +.+..+++.++++.++.....   ...+.++
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---gaE~TG~  536 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---GCEVTGI  536 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---TCEEEEE
T ss_pred             cccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---CccCcCe
Confidence             000 00000012235688999999 8999999643             237778888898887765322   2346689


Q ss_pred             EEeCCCCEEEEE
Q 018242          148 DIDQSTGIIYFT  159 (359)
Q Consensus       148 ~~d~~g~~l~v~  159 (359)
                      +++||+++|||.
T Consensus       537 ~fspDg~tlfvn  548 (592)
T 3zwu_A          537 SFSPDQKTLFVG  548 (592)
T ss_dssp             EECTTSSEEEEE
T ss_pred             eECCCCCEEEEE
Confidence            999999988887

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.59  E-value=0.36  Score=47.24  Aligned_cols=103  Identities=10%  Similarity=-0.029  Sum_probs=62.1

Q ss_pred             CCceEEEcc-CCCeeEEecCC-----------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           35 GPESLAFDA-LGEGPYTGVSD-----------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        35 ~p~~i~~~~-~G~~l~~~~~~-----------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      .+...++.+ +|+++.++..+           ..+.+||+.+++|+.....+                 ......-.+.+
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------------~~~~~~~~~~~  249 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------------TKHDMFCPGIS  249 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------------CSCCCSSCEEE
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----------------CCCCCcccccc
Confidence            566778777 78855554321           15889999998776543111                 00001122466


Q ss_pred             EecCCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEE
Q 018242          103 FNKTNGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus       103 ~~~~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~  159 (359)
                      +.. +++||+....  ..+.+||+.+++++.+.. .+  ....-+.+++-++|+ ||+.
T Consensus       250 ~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~--~~R~~~s~~~~~dg~-iyv~  303 (656)
T 1k3i_A          250 MDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQ--VARGYQSSATMSDGR-VFTI  303 (656)
T ss_dssp             ECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCC-CS--SCCSSCEEEECTTSC-EEEE
T ss_pred             CCC-CCCEEEeCCCCCCceEEecCcCCceeECCC-CC--ccccccceEEecCCe-EEEE
Confidence            666 8899987432  259999999988876532 11  111223556667888 8887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.49  E-value=0.21  Score=49.26  Aligned_cols=108  Identities=10%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS  222 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~  222 (359)
                      .+.++.++|||++|-++...             .+.....|+.+|.++++............+++++ |++.++++....
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~-------------~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSL-------------AGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEEC-------------SSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred             EEEEEEECCCCCEEEEEEec-------------CCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecC
Confidence            56678999999965554211             0122346999999988764431111113577899 999887776542


Q ss_pred             ------------CEEEEEEcCCCCCcceeEeecCC---CCCCceEECCCCC-EEEEEe
Q 018242          223 ------------CRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       223 ------------~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~-lwv~~~  264 (359)
                                  ..|+++++..+......++....   ..-.++.+++||+ |+++..
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~  253 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAA  253 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEc
Confidence                        46999987654322233332211   1123467899997 444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.17  E-value=0.62  Score=41.10  Aligned_cols=193  Identities=11%  Similarity=0.154  Sum_probs=100.5

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      .+..+.-....+|.+.+++. .|+....+.|++-...+..|+.....                 ..........|.+++ 
T Consensus        29 ~~~~~~~~~~~~v~~~~~~~-~~~~G~~g~i~~s~DgG~tW~~~~~~-----------------~~~~~~~~~~i~~~~-   89 (327)
T 2xbg_A           29 AIQLPTTATILDMSFIDRHH-GWLVGVNATLMETRDGGQTWEPRTLV-----------------LDHSDYRFNSVSFQG-   89 (327)
T ss_dssp             EEECSCSSCEEEEEESSSSC-EEEEETTTEEEEESSTTSSCEECCCC-----------------CSCCCCEEEEEEEET-
T ss_pred             EeecCCCCcEEEEEECCCCc-EEEEcCCCeEEEeCCCCCCCeECCCC-----------------CCCCCccEEEEEecC-
Confidence            44444445667888887787 55544557777764334446543210                 000111245777864 


Q ss_pred             CCeEEEEeCCCcEEEEeCCCC-eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGG-LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                       +++|++.....|++ ..++| ..+.+... ...+ ..+..|++.++++ +|++..                  .+.|++
T Consensus        90 -~~~~~~g~~g~i~~-S~DgG~tW~~~~~~-~~~~-~~~~~i~~~~~~~-~~~~~~------------------~g~v~~  146 (327)
T 2xbg_A           90 -NEGWIVGEPPIMLH-TTDGGQSWSQIPLD-PKLP-GSPRLIKALGNGS-AEMITN------------------VGAIYR  146 (327)
T ss_dssp             -TEEEEEEETTEEEE-ESSTTSSCEECCCC-TTCS-SCEEEEEEEETTE-EEEEET------------------TCCEEE
T ss_pred             -CeEEEEECCCeEEE-ECCCCCCceECccc-cCCC-CCeEEEEEECCCC-EEEEeC------------------CccEEE
Confidence             67888754445655 44544 34433211 0111 2346677777777 887721                  345776


Q ss_pred             EeCCCCcEEEEeCCC-CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEE
Q 018242          186 YDPATKQVTVLLGNL-SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       186 ~d~~~~~~~~~~~~~-~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~  263 (359)
                      -...+...+.+.... ....+++++++++ +|+.. ..+.+++-. +...... +.... .+.....++++++|++|++.
T Consensus       147 S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~G~~~~S~-d~gG~tW-~~~~~~~~~~~~~~~~~~~g~~~~~~  222 (327)
T 2xbg_A          147 TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SRGSFYSTW-EPGQTAW-EPHNRTTSRRLHNMGFTPDGRLWMIV  222 (327)
T ss_dssp             ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TTSSEEEEE-CTTCSSC-EEEECCSSSCEEEEEECTTSCEEEEE
T ss_pred             EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CCCcEEEEe-CCCCCce-eECCCCCCCccceeEECCCCCEEEEe
Confidence            554444555443322 2345778888776 44444 345666654 2111111 11111 12223457788899999877


Q ss_pred             ec
Q 018242          264 HS  265 (359)
Q Consensus       264 ~~  265 (359)
                      ..
T Consensus       223 ~~  224 (327)
T 2xbg_A          223 NG  224 (327)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.76  E-value=1.5  Score=42.74  Aligned_cols=75  Identities=11%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             eEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-
Q 018242           38 SLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-  115 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-  115 (359)
                      +.++..+|+++.++- ....+.+||+.+++|+.....+                   ....-+..++.+ ++++|+... 
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~-------------------~~R~~~s~~~~~-dg~iyv~GG~  306 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ-------------------VARGYQSSATMS-DGRVFTIGGS  306 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS-------------------SCCSSCEEEECT-TSCEEEECCC
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC-------------------ccccccceEEec-CCeEEEEeCc
Confidence            467778899555554 3357999999998887653111                   111123455555 778887643 


Q ss_pred             C------CcEEEEeCCCCeEEEE
Q 018242          116 Y------FGLLKVGPEGGLATAV  132 (359)
Q Consensus       116 ~------~~i~~~~~~~~~~~~~  132 (359)
                      .      +.+.+||+.+++++.+
T Consensus       307 ~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          307 WSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ccCCcccccceEeCCCCCcceeC
Confidence            1      2488899988887764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.56  E-value=1.4  Score=43.75  Aligned_cols=107  Identities=9%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             ccceEEEe-CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC-cEEEEeCCCC-CCceEEEccCCCEEEEEe
Q 018242          143 FCNSLDID-QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK-QVTVLLGNLS-FPNGVALSEDGNYILLAE  219 (359)
Q Consensus       143 ~~~~l~~d-~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~~~~~-~p~gia~~~d~~~l~v~~  219 (359)
                      ......++ |||++|.++...             .+.....|+.+|.+++ +..  ..... ...+++++||++.++++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCCC--CCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEeC--CccccCceeeEEEecCCCEEEEEE
Confidence            45568999 999966655321             0112235999999887 521  11111 135789999998777765


Q ss_pred             cCC----CEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCC-EEEEEe
Q 018242          220 TTS----CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       220 ~~~----~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~-lwv~~~  264 (359)
                      ...    ..|+++++.++......++.. -..+-.++.+++||+ |.+...
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~  290 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ  290 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence            432    478888876543222233332 112223467889997 444443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=95.23  E-value=0.93  Score=41.18  Aligned_cols=134  Identities=10%  Similarity=0.058  Sum_probs=80.8

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      .+.++   .+..+++  ||+.++++ .++.|..||..+-.- ....                     ........+...+
T Consensus        84 ~~~lp---~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~---------------------~~~~~v~~i~~~~  136 (388)
T 1xip_A           84 EKEIP---DVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT---------------------SFEKPVFQLKNVN  136 (388)
T ss_dssp             EEECT---TEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE---------------------ECSSCEEEEEECS
T ss_pred             EeeCC---CeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc---------------------eeecceeeEEecC
Confidence            44444   3889999  88888888 778999999765321 1110                     0011123343333


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                        .++.+++..+.|..++.+++....+.        ..+..++++|+|.  .++                  ...|.+..
T Consensus       137 --p~~av~~~dG~L~v~dl~~~~~~~~~--------~~Vs~v~WSpkG~--~vg------------------~~dg~i~~  186 (388)
T 1xip_A          137 --NTLVILNSVNDLSALDLRTKSTKQLA--------QNVTSFDVTNSQL--AVL------------------LKDRSFQS  186 (388)
T ss_dssp             --SEEEEEETTSEEEEEETTTCCEEEEE--------ESEEEEEECSSEE--EEE------------------ETTSCEEE
T ss_pred             --CCEEEEECCCCEEEEEccCCcccccc--------CCceEEEEcCCce--EEE------------------EcCCcEEE
Confidence              24666666667888898877654432        2567899999993  444                  12456777


Q ss_pred             EeCCCCcE---EEEe------C---CCCCCceEEEccCCCEEEE
Q 018242          186 YDPATKQV---TVLL------G---NLSFPNGVALSEDGNYILL  217 (359)
Q Consensus       186 ~d~~~~~~---~~~~------~---~~~~p~gia~~~d~~~l~v  217 (359)
                      |+++++.+   ..+.      .   +...+..|.+.++++++.+
T Consensus       187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            78876664   2331      1   2234567888877765544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.12  E-value=1.5  Score=38.04  Aligned_cols=138  Identities=17%  Similarity=0.211  Sum_probs=75.3

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC----------CcEEEEeC
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY----------FGLLKVGP  124 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~----------~~i~~~~~  124 (359)
                      ..++++|+.+++|+.+...+                   ....-+.++..  ++.||+....          +.+.++|+
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQ-------------------VPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCS-------------------SCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             ceEEEEcCCCCeEeECCCCC-------------------cccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            46899999998888753111                   00112234433  6788876322          35899999


Q ss_pred             CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc
Q 018242          125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN  204 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~  204 (359)
                      .+++++.+.....  + ..-..++. -+++ ||+.--..            .......++++|+.+++.+.+. ....+.
T Consensus        98 ~~~~W~~~~~~p~--~-r~~~~~~~-~~~~-iyv~GG~~------------~~~~~~~~~~yd~~~~~W~~~~-~~p~~r  159 (308)
T 1zgk_A           98 MTNQWSPCAPMSV--P-RNRIGVGV-IDGH-IYAVGGSH------------GCIHHNSVERYEPERDEWHLVA-PMLTRR  159 (308)
T ss_dssp             TTTEEEECCCCSS--C-CBTCEEEE-ETTE-EEEECCEE------------TTEECCCEEEEETTTTEEEECC-CCSSCC
T ss_pred             CCCeEeECCCCCc--C-ccccEEEE-ECCE-EEEEcCCC------------CCcccccEEEECCCCCeEeECC-CCCccc
Confidence            9998876542111  1 11123333 3666 88872100            0011246999999988776553 222221


Q ss_pred             ---eEEEccCCCEEEEEecC-----CCEEEEEEcCCC
Q 018242          205 ---GVALSEDGNYILLAETT-----SCRILRYWLKTS  233 (359)
Q Consensus       205 ---gia~~~d~~~l~v~~~~-----~~~i~~~~~~~~  233 (359)
                         ..+.. ++ .+|+..-.     .+.+++||+...
T Consensus       160 ~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          160 IGVGVAVL-NR-LLYAVGGFDGTNRLNSAECYYPERN  194 (308)
T ss_dssp             BSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cceEEEEE-CC-EEEEEeCCCCCCcCceEEEEeCCCC
Confidence               22332 44 47776532     256888987543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.07  E-value=0.21  Score=49.76  Aligned_cols=153  Identities=7%  Similarity=-0.065  Sum_probs=83.4

Q ss_pred             ceEEEc-cCCCeeE-EecCC----CEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           37 ESLAFD-ALGEGPY-TGVSD----GRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        37 ~~i~~~-~~G~~l~-~~~~~----~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      .++.++ |||+.+. +....    ..|+.+|..++ +....                   .+..   ...++++++++..
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------------------~~~~---~~~~~~WspDg~~  234 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------------------KVSG---TNGEIVWGPDHTS  234 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------------------CEEE---ECSCCEECSSTTE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------------------cccC---ceeeEEEecCCCE
Confidence            356788 8998444 33332    25899998876 42100                   1111   1235778885556


Q ss_pred             EEEEeCC-----CcEEEEeCCCCeE--EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242          110 LYIADAY-----FGLLKVGPEGGLA--TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR  182 (359)
Q Consensus       110 l~v~~~~-----~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~  182 (359)
                      |+++...     ..|++.+..+++.  +.+... ...  ....++.+++||++|+++...               .....
T Consensus       235 l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~--~~~~~~~~SpDg~~l~~~~~~---------------~~~~~  296 (751)
T 2xe4_A          235 LFYVTKDETLRENKVWRHVMGKLQSEDVCLYEE-HNP--LFSAFMYKAADTNTLCIGSQS---------------PETAE  296 (751)
T ss_dssp             EEEEEECTTCCEEEEEEEETTSCGGGCEEEEEC-CCT--TCEEEEEECTTSSEEEEEEEC---------------SSCEE
T ss_pred             EEEEEECCCCCCCEEEEEECCCCchhcEEEEec-CCC--ceEEEEEECCCCCEEEEEecC---------------CCCce
Confidence            6665322     2488888876542  122221 111  123467899999977776321               12346


Q ss_pred             EEEEeCCCC--cE--EEEeCCCCCCceEEEcc---CCCEEEEEecC----CCEEEEEEcCC
Q 018242          183 LMKYDPATK--QV--TVLLGNLSFPNGVALSE---DGNYILLAETT----SCRILRYWLKT  232 (359)
Q Consensus       183 v~~~d~~~~--~~--~~~~~~~~~p~gia~~~---d~~~l~v~~~~----~~~i~~~~~~~  232 (359)
                      |+.+|.+++  ..  +.+.....   +..+++   +++.+|+....    ..+|++++++.
T Consensus       297 l~~~d~~~~~~~~~~~~l~~~~~---~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          297 VHLLDLRKGNAHNTLEIVRPREK---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEEESSSCTTCCCEEESSCCCT---TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EEEEECCCCCCCceeEEeecCCC---CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            888998764  33  43332222   222333   36666665433    35899998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.78  E-value=1.8  Score=37.34  Aligned_cols=137  Identities=13%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC----------CCcEEEEeC
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA----------YFGLLKVGP  124 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~----------~~~i~~~~~  124 (359)
                      ..+++||+.+++|+.....+                   ....-+.++..  ++.||+...          .+.+.+||+
T Consensus       118 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          118 YLFECYDTRTESWHTKPSML-------------------TQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCS-------------------SCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred             eeEEEEeCCCCceEeCCCCc-------------------CCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCC
Confidence            46899999999888764211                   11112233333  678888642          234889999


Q ss_pred             CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc
Q 018242          125 EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN  204 (359)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~  204 (359)
                      ++++++.+.....  + ..-+.+++. +++ ||+.--..            .......+++||+.+++.+.+. ....+.
T Consensus       177 ~~~~W~~~~~~p~--~-r~~~~~~~~-~~~-i~v~GG~~------------~~~~~~~~~~yd~~~~~W~~~~-~~p~~r  238 (306)
T 3ii7_A          177 ATETWTELCPMIE--A-RKNHGLVFV-KDK-IFAVGGQN------------GLGGLDNVEYYDIKLNEWKMVS-PMPWKG  238 (306)
T ss_dssp             TTTEEEEECCCSS--C-CBSCEEEEE-TTE-EEEECCEE------------TTEEBCCEEEEETTTTEEEECC-CCSCCB
T ss_pred             CCCeEEECCCccc--h-hhcceEEEE-CCE-EEEEeCCC------------CCCCCceEEEeeCCCCcEEECC-CCCCCc
Confidence            9998877643111  1 122233333 566 88872100            0011246999999988776653 222221


Q ss_pred             ---eEEEccCCCEEEEEecC-----CCEEEEEEcCC
Q 018242          205 ---GVALSEDGNYILLAETT-----SCRILRYWLKT  232 (359)
Q Consensus       205 ---gia~~~d~~~l~v~~~~-----~~~i~~~~~~~  232 (359)
                         ..+.. ++ .+|+..-.     .+.+++||+..
T Consensus       239 ~~~~~~~~-~~-~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          239 VTVKCAAV-GS-IVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             SCCEEEEE-TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred             cceeEEEE-CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence               22222 34 36666532     24566666543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=94.73  E-value=0.026  Score=51.19  Aligned_cols=52  Identities=13%  Similarity=0.079  Sum_probs=28.3

Q ss_pred             CceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          180 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .+.|+.+|.++|+....... .......+..+++ +|++.+.++.|+.||....
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG   69 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNN   69 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC-----
T ss_pred             CCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCCC
Confidence            46799999988887754332 2222222334554 6777677889999987543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.60  E-value=0.21  Score=47.23  Aligned_cols=87  Identities=20%  Similarity=0.182  Sum_probs=60.4

Q ss_pred             eEEEEeCCC----C-cEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCC------CCCcce-e-Eeec--CCC
Q 018242          182 RLMKYDPAT----K-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT------SKAGTI-E-IVAQ--LPG  246 (359)
Q Consensus       182 ~v~~~d~~~----~-~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~------~~~~~~-~-~~~~--~~~  246 (359)
                      +|-++|...    + .+..+......|.|+.++|||+++++++-.+.++.+++...      ++..+. . ...+  ++-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            567787754    1 23334455578999999999999999999999999999752      222111 1 1222  334


Q ss_pred             CCCceEECCCCCEEEEEecCCC
Q 018242          247 FPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       247 ~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .|--.++|++|+.|++.+-...
T Consensus       379 GPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             CEEEEEECSSSEEEEEETTTTE
T ss_pred             cccEEEECCCCceEeeeeecce
Confidence            5777899999999988876554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.39  E-value=2.1  Score=37.20  Aligned_cols=105  Identities=8%  Similarity=0.001  Sum_probs=59.7

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-------CcEEEEeCCCC
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-------FGLLKVGPEGG  127 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-------~~i~~~~~~~~  127 (359)
                      ..++++|+.+++|+.....+                   ....-+.++..  +++||+....       +.+.++|+.+.
T Consensus       117 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          117 DSVMCYDRLSFKWGESDPLP-------------------YVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             CCEEEEETTTTEEEECCCCS-------------------SCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             ceEEEECCCCCcEeECCCCC-------------------CcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            46899999998887653111                   11112334443  6788886432       24899999999


Q ss_pred             eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          128 LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      +.+.+.....  + ..-+.+++ -+++ ||+.--..            .......+++||+++++...+.
T Consensus       176 ~W~~~~~~p~--~-r~~~~~~~-~~~~-iyv~GG~~------------~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          176 EWKELAPMQT--A-RSLFGATV-HDGR-IIVAAGVT------------DTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             EEEECCCCSS--C-CBSCEEEE-ETTE-EEEEEEEC------------SSSEEEEEEEEETTTTEEEEEC
T ss_pred             eEEECCCCCC--c-hhceEEEE-ECCE-EEEEeccC------------CCCccceEEEEECCCCeEEECC
Confidence            8876542111  1 11223333 3566 88862100            0011236899999988777653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.28  E-value=2.7  Score=37.17  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=49.9

Q ss_pred             CCCeeEEe-cCCCEEEEEEcCC--cceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC----
Q 018242           44 LGEGPYTG-VSDGRIIKWHQDQ--RRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY----  116 (359)
Q Consensus        44 ~G~~l~~~-~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~----  116 (359)
                      +++++.++ .....++++|+.+  .+|+.....                  ......-+.++..  ++.||+....    
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~------------------p~~~R~~~~~~~~--~~~lyv~GG~~~~~   78 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAF------------------PGGPRDQATSAFI--DGNLYVFGGIGKNS   78 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCC------------------TTCCCBSCEEEEE--TTEEEEECCEEECT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCC------------------CCCcCccceEEEE--CCEEEEEcCCCCCC
Confidence            56633343 3345799999974  667765311                  1011112334443  6788885321    


Q ss_pred             -------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEE
Q 018242          117 -------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus       117 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~  159 (359)
                             +.+.+||+.+.+++.+.... ..+ ..-+.++. .+++ ||+.
T Consensus        79 ~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~-r~~~~~~~-~~~~-iyv~  124 (357)
T 2uvk_A           79 EGLTQVFNDVHKYNPKTNSWVKLMSHA-PMG-MAGHVTFV-HNGK-AYVT  124 (357)
T ss_dssp             TSCEEECCCEEEEETTTTEEEECSCCC-SSC-CSSEEEEE-ETTE-EEEE
T ss_pred             CccceeeccEEEEeCCCCcEEECCCCC-Ccc-cccceEEE-ECCE-EEEE
Confidence                   24899999999887654322 011 12223333 5666 8886

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.15  E-value=2.6  Score=36.58  Aligned_cols=104  Identities=14%  Similarity=0.194  Sum_probs=59.4

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-------CCcEEEEeCCCC
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-------YFGLLKVGPEGG  127 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-------~~~i~~~~~~~~  127 (359)
                      ..+++||+.+++|+.....+                   ....-+.++. . ++.||+...       .+.+.+||+.++
T Consensus       127 ~~~~~yd~~~~~W~~~~~~p-------------------~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          127 DSVLCYDPVAAKWSEVKNLP-------------------IKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EEEEEEETTTTEEEEECCCS-------------------SCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             ceEEEEeCCCCCEeECCCCC-------------------CcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            36889999999888764111                   0011223444 3 788888632       124899999999


Q ss_pred             eEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          128 LATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +++.+.....  + ..-+.+++ -+++ ||+.--.   .         .......+++||+++++.+.+
T Consensus       186 ~W~~~~~~p~--~-r~~~~~~~-~~~~-iyv~GG~---~---------~~~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          186 DWKDLAPMKT--P-RSMFGVAI-HKGK-IVIAGGV---T---------EDGLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             EEEEECCCSS--C-CBSCEEEE-ETTE-EEEEEEE---E---------TTEEEEEEEEEETTTCCEEEC
T ss_pred             EEEECCCCCC--C-cccceEEE-ECCE-EEEEcCc---C---------CCCccceEEEEECCCCeEEEC
Confidence            8877643111  1 11223333 3566 8887210   0         001123688999998877665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.84  E-value=2.9  Score=36.07  Aligned_cols=138  Identities=15%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------CCcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------YFGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------~~~i~~~~~~~~~  128 (359)
                      ..++++|+.+++|+.....+                   ....-+.++..  ++.||+...      .+.+.++|+.+++
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMS-------------------VPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCS-------------------SCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             ceEEEECCCCCeEeECCCCC-------------------cCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            46889999998887753111                   11112334433  678888632      1358999999998


Q ss_pred             EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---e
Q 018242          129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---G  205 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---g  205 (359)
                      .+.+.....  + ..-..+++. +++ ||+.--..            .......+++||+.+++...+. ....|.   .
T Consensus       149 W~~~~~~p~--~-r~~~~~~~~-~~~-iyv~GG~~------------~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~  210 (308)
T 1zgk_A          149 WHLVAPMLT--R-RIGVGVAVL-NRL-LYAVGGFD------------GTNRLNSAECYYPERNEWRMIT-AMNTIRSGAG  210 (308)
T ss_dssp             EEECCCCSS--C-CBSCEEEEE-TTE-EEEECCBC------------SSCBCCCEEEEETTTTEEEECC-CCSSCCBSCE
T ss_pred             EeECCCCCc--c-ccceEEEEE-CCE-EEEEeCCC------------CCCcCceEEEEeCCCCeEeeCC-CCCCccccce
Confidence            876543111  1 112233333 566 88872110            0011346999999988776543 222221   2


Q ss_pred             EEEccCCCEEEEEecC-----CCEEEEEEcCCC
Q 018242          206 VALSEDGNYILLAETT-----SCRILRYWLKTS  233 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~-----~~~i~~~~~~~~  233 (359)
                      .+.. ++ .+|+..-.     .+.+++||+...
T Consensus       211 ~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          211 VCVL-HN-CIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEEE-TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEE-CC-EEEEEeCCCCCCccceEEEEeCCCC
Confidence            2222 44 47777633     256899987543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.39  E-value=3.6  Score=35.63  Aligned_cols=142  Identities=12%  Similarity=0.067  Sum_probs=74.4

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------C------CcEEEE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------Y------FGLLKV  122 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------~------~~i~~~  122 (359)
                      ..+..||+.+++|+... .+                 .+....-+.++. . ++.||+...      .      +.+.++
T Consensus        13 ~~~~~yd~~~~~W~~~~-~~-----------------~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~   72 (315)
T 4asc_A           13 EGAVAYDPAANECYCAS-LS-----------------SQVPKNHVSLVT-K-ENQVFVAGGLFYNEDNKEDPMSAYFLQF   72 (315)
T ss_dssp             TEEEEEETTTTEEEEEE-CC-----------------CCSCSSEEEEEC-T-TCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred             CceEEECCCCCeEecCC-CC-----------------CCCCccceEEEE-E-CCEEEEEcCcccCCCCCccccccceEEe
Confidence            57999999999887521 10                 001111223333 2 677877532      1      127889


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF  202 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~  202 (359)
                      |+.+++.+.+... +. + ..-+.++.. +++ ||+.--.....         .......++++|+.+++.+.+. ....
T Consensus        73 d~~~~~W~~~~~~-p~-~-r~~~~~~~~-~~~-lyv~GG~~~~~---------~~~~~~~~~~~d~~~~~W~~~~-~~p~  137 (315)
T 4asc_A           73 DHLDSEWLGMPPL-PS-P-RCLFGLGEA-LNS-IYVVGGREIKD---------GERCLDSVMCYDRLSFKWGESD-PLPY  137 (315)
T ss_dssp             ETTTTEEEECCCB-SS-C-EESCEEEEE-TTE-EEEECCEESST---------TCCBCCCEEEEETTTTEEEECC-CCSS
T ss_pred             cCCCCeEEECCCC-Cc-c-hhceeEEEE-CCE-EEEEeCCcCCC---------CCcccceEEEECCCCCcEeECC-CCCC
Confidence            9999988765321 11 1 112233333 555 88872100000         0122346999999988766543 2222


Q ss_pred             Cc---eEEEccCCCEEEEEecC------CCEEEEEEcCCC
Q 018242          203 PN---GVALSEDGNYILLAETT------SCRILRYWLKTS  233 (359)
Q Consensus       203 p~---gia~~~d~~~l~v~~~~------~~~i~~~~~~~~  233 (359)
                      |.   ..+. .++ .+|+..-.      .+.+++||+...
T Consensus       138 ~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          138 VVYGHTVLS-HMD-LVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             CCBSCEEEE-ETT-EEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             cccceeEEE-ECC-EEEEEeCCCCCCcccceEEEEeCCCC
Confidence            21   2222 344 47777643      246888986543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.13  E-value=3.8  Score=35.15  Aligned_cols=140  Identities=15%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-C-----CcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-Y-----FGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-~-----~~i~~~~~~~~~  128 (359)
                      ..++++|+.+++|+.....+                   ....-++++..  ++.+|+... .     +.+.++|+.+++
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMR-------------------DRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCS-------------------SCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             cceEEECCCCCceeeCCCCC-------------------ccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence            46899999999888764211                   11112344443  678887532 1     248899999998


Q ss_pred             EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---e
Q 018242          129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---G  205 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---g  205 (359)
                      .+.+.....  + ..-+.+++ -+++ ||+.--...   .       .......+++||+.+++...+. ....+.   .
T Consensus       136 W~~~~~~p~--~-r~~~~~~~-~~~~-iyv~GG~~~---~-------~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~  199 (302)
T 2xn4_A          136 WFHVAPMNT--R-RSSVGVGV-VGGL-LYAVGGYDV---A-------SRQCLSTVECYNATTNEWTYIA-EMSTRRSGAG  199 (302)
T ss_dssp             EEEECCCSS--C-CBSCEEEE-ETTE-EEEECCEET---T-------TTEECCCEEEEETTTTEEEEEC-CCSSCCBSCE
T ss_pred             EeecCCCCC--c-ccCceEEE-ECCE-EEEEeCCCC---C-------CCccccEEEEEeCCCCcEEECC-CCcccccccc
Confidence            877643211  1 11223333 3566 888721100   0       0001346999999988776653 222221   2


Q ss_pred             EEEccCCCEEEEEecC-----CCEEEEEEcCCC
Q 018242          206 VALSEDGNYILLAETT-----SCRILRYWLKTS  233 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~-----~~~i~~~~~~~~  233 (359)
                      .+. -++ .+|+..-.     .+.+++||+..+
T Consensus       200 ~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          200 VGV-LNN-LLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEE-ETT-EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EEE-ECC-EEEEECCCCCCcccceEEEEeCCCC
Confidence            222 244 47777532     246889987543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.04  E-value=3.9  Score=35.03  Aligned_cols=105  Identities=14%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC------CCcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA------YFGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~------~~~i~~~~~~~~~  128 (359)
                      ..++++|+.+++|+.+...+                   .....+.++..  +++||+...      .+.+.+||+.+++
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQ-------------------TAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECS-------------------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             ceEEEEcCCCCeEEECCCCC-------------------CCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            47999999999888775221                   11112334333  678888632      2358999999999


Q ss_pred             EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      ++.+.....  +. .-+.++. -+++ ||+.--..            .......+++||+++++.+.+.
T Consensus       187 W~~~~~~p~--~r-~~~~~~~-~~~~-i~v~GG~~------------~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          187 WTNVTPMAT--KR-SGAGVAL-LNDH-IYVVGGFD------------GTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             EEEECCCSS--CC-BSCEEEE-ETTE-EEEECCBC------------SSSBCCCEEEEETTTTEEEEEC
T ss_pred             EEeCCCCCc--cc-ccceEEE-ECCE-EEEEeCCC------------CCcccceEEEEeCCCCcEEECC
Confidence            877642111  11 1223333 3556 88872110            0011346999999988776653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=92.56  E-value=2.3  Score=38.63  Aligned_cols=155  Identities=11%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      .....++++++..+++++..+ ++..|+.+.-. ..+......       .++.  ....... +..++|  ++..|+++
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~-~~~~~~~~~-------~~~~--~~~~lp~-V~~l~f--d~~~L~v~  103 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLR-DHITSDSTP-------LTFK--WEKEIPD-VIFVCF--HGDQVLVS  103 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHH-HHHHSSSCC-------CCCS--EEEECTT-EEEEEE--ETTEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhh-hhhcccccc-------ccce--EEeeCCC-eeEEEE--CCCEEEEE
Confidence            346689999999867777775 66668765321 000000000       0000  0112223 788899  38889998


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                       ..++|..|+..+-.......... .   .++++..-+. + +.+.                  ...|.|+.+|.+++..
T Consensus       104 -~~~~l~v~dv~sl~~~~~~~~~~-~---~v~~i~~~~p-~-~av~------------------~~dG~L~v~dl~~~~~  158 (388)
T 1xip_A          104 -TRNALYSLDLEELSEFRTVTSFE-K---PVFQLKNVNN-T-LVIL------------------NSVNDLSALDLRTKST  158 (388)
T ss_dssp             -ESSEEEEEESSSTTCEEEEEECS-S---CEEEEEECSS-E-EEEE------------------ETTSEEEEEETTTCCE
T ss_pred             -cCCcEEEEEchhhhccCccceee-c---ceeeEEecCC-C-EEEE------------------ECCCCEEEEEccCCcc
Confidence             45678999876432111111111 1   1234333322 2 3333                  2246788898876665


Q ss_pred             EEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ....   .....++++|+|  +.+ ...++.+..|+.+..
T Consensus       159 ~~~~---~~Vs~v~WSpkG--~~v-g~~dg~i~~~~~~~~  192 (388)
T 1xip_A          159 KQLA---QNVTSFDVTNSQ--LAV-LLKDRSFQSFAWRNG  192 (388)
T ss_dssp             EEEE---ESEEEEEECSSE--EEE-EETTSCEEEEEEETT
T ss_pred             cccc---CCceEEEEcCCc--eEE-EEcCCcEEEEcCCCc
Confidence            4432   356789999998  444 446678888876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=92.40  E-value=4.8  Score=34.54  Aligned_cols=139  Identities=13%  Similarity=0.039  Sum_probs=76.9

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-----CCcEEEEeCCCCeE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-----YFGLLKVGPEGGLA  129 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-----~~~i~~~~~~~~~~  129 (359)
                      ..+++||+.+++|+.+...+                   ....-+.++..  ++.||+...     .+.+.++|+.+++.
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W   82 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPF-------------------EKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSW   82 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCS-------------------CCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred             ceEEEecCCCCCEecCCCCC-------------------cccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence            57999999999888653211                   11112334433  678888632     13589999999988


Q ss_pred             EEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---eE
Q 018242          130 TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---GV  206 (359)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---gi  206 (359)
                      +.+.....  + ..-+.++. -+++ ||+.--...           .......++++|+.+++.+.+. ....|.   ..
T Consensus        83 ~~~~~~p~--~-r~~~~~~~-~~~~-iyv~GG~~~-----------~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~  145 (306)
T 3ii7_A           83 YSKLGPPT--P-RDSLAACA-AEGK-IYTSGGSEV-----------GNSALYLFECYDTRTESWHTKP-SMLTQRCSHGM  145 (306)
T ss_dssp             EEEECCSS--C-CBSCEEEE-ETTE-EEEECCBBT-----------TBSCCCCEEEEETTTTEEEEEC-CCSSCCBSCEE
T ss_pred             EECCCCCc--c-ccceeEEE-ECCE-EEEECCCCC-----------CCcEeeeEEEEeCCCCceEeCC-CCcCCcceeEE
Confidence            76643211  1 11122332 2566 888721100           0112346999999988776653 222221   22


Q ss_pred             EEccCCCEEEEEecC---------CCEEEEEEcCCC
Q 018242          207 ALSEDGNYILLAETT---------SCRILRYWLKTS  233 (359)
Q Consensus       207 a~~~d~~~l~v~~~~---------~~~i~~~~~~~~  233 (359)
                      +. .++ .+|+..-.         .+.+++||+...
T Consensus       146 ~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          146 VE-ANG-LIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             EE-ETT-EEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             EE-ECC-EEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            22 244 47776532         356888887543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.17  E-value=5.2  Score=39.31  Aligned_cols=125  Identities=9%  Similarity=0.058  Sum_probs=69.2

Q ss_pred             ceEEEcc-CCCeeEEecCC------CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           37 ESLAFDA-LGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        37 ~~i~~~~-~G~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      ++++..+ +|+++.++-.+      ..+++||+.+++|+.....                   +....-+..+... ++.
T Consensus       443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~-------------------p~~R~~h~~~~~~-~~~  502 (695)
T 2zwa_A          443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL-------------------SHTRFRHSACSLP-DGN  502 (695)
T ss_dssp             CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCC-------------------SBCCBSCEEEECT-TSC
T ss_pred             eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCC-------------------CCCcccceEEEEc-CCE
Confidence            3455544 67744444321      4588999999888875311                   1111223444434 788


Q ss_pred             EEEEeCCC---cEEEEeCCCCeEEEEeecCCC-ccccccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          110 LYIADAYF---GLLKVGPEGGLATAVATQSEG-IPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       110 l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      ||+.....   .+.+||+.+++++.+...... .+......++++.+ ++ ||+.--... .         .......++
T Consensus       503 iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~-~---------~~~~~~~v~  571 (695)
T 2zwa_A          503 VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFM-D---------QTTVSDKAI  571 (695)
T ss_dssp             EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCT-T---------SSCBCCEEE
T ss_pred             EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE-EEEECCcCC-C---------CCeeeCcEE
Confidence            88874321   589999999998765431110 01112233555766 66 988721100 0         001235699


Q ss_pred             EEeCCCCc
Q 018242          185 KYDPATKQ  192 (359)
Q Consensus       185 ~~d~~~~~  192 (359)
                      +||+.++.
T Consensus       572 ~yd~~~~~  579 (695)
T 2zwa_A          572 IFKYDAEN  579 (695)
T ss_dssp             EEEECTTC
T ss_pred             EEEccCCc
Confidence            99998876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.06  E-value=5.2  Score=34.18  Aligned_cols=138  Identities=14%  Similarity=0.177  Sum_probs=75.5

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~  128 (359)
                      ..++++|+.+++|+.+...+                   ....-+.++..  ++.||+....      +.+.++|+.+++
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSIT-------------------RKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCS-------------------SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             eEEEEEcCCCCeEEeCCCCC-------------------hhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            46899999998887653111                   01112334333  6788886321      358999999888


Q ss_pred             ---EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCC--
Q 018242          129 ---ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP--  203 (359)
Q Consensus       129 ---~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p--  203 (359)
                         .+.+.....  + ..-+.++. -+++ ||+.--..            .......++++|+.+++.+.+.. ...+  
T Consensus        90 ~~~W~~~~~~p~--~-r~~~~~~~-~~~~-lyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~  151 (301)
T 2vpj_A           90 DGVWYSVAPMNV--R-RGLAGATT-LGDM-IYVSGGFD------------GSRRHTSMERYDPNIDQWSMLGD-MQTARE  151 (301)
T ss_dssp             TCCCEEECCCSS--C-CBSCEEEE-ETTE-EEEECCBC------------SSCBCCEEEEEETTTTEEEEEEE-CSSCCB
T ss_pred             CCeeEECCCCCC--C-ccceeEEE-ECCE-EEEEcccC------------CCcccceEEEEcCCCCeEEECCC-CCCCcc
Confidence               776533111  1 11223333 2566 88872110            01123469999999887766532 1222  


Q ss_pred             -ceEEEccCCCEEEEEecC-----CCEEEEEEcCCC
Q 018242          204 -NGVALSEDGNYILLAETT-----SCRILRYWLKTS  233 (359)
Q Consensus       204 -~gia~~~d~~~l~v~~~~-----~~~i~~~~~~~~  233 (359)
                       ...+. .++ .+|+..-.     .+.+++||+...
T Consensus       152 ~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          152 GAGLVV-ASG-VIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             SCEEEE-ETT-EEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cceEEE-ECC-EEEEECCCCCCcccceEEEEeCCCC
Confidence             12222 244 47776432     356888987543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.86  E-value=1.5  Score=41.54  Aligned_cols=107  Identities=7%  Similarity=-0.026  Sum_probs=65.7

Q ss_pred             cccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC------Cc-------EEEEeCCCCCCceEEE
Q 018242          142 RFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT------KQ-------VTVLLGNLSFPNGVAL  208 (359)
Q Consensus       142 ~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~------~~-------~~~~~~~~~~p~gia~  208 (359)
                      ..|+++.++|||++++++.-                 ....+.+++.+.      ++       +.....-..+|-..+|
T Consensus       323 ksPHGv~vsPDGkyi~v~GK-----------------LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~F  385 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGK-----------------LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTF  385 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECT-----------------TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEE
T ss_pred             CCCcceeeCCCCCEEEEcCC-----------------CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEE
Confidence            57999999999998888732                 223455555431      01       1111223567889999


Q ss_pred             ccCCCEEEEEecCCCEEEEEEcCC-------CCCcceeEeecCCCCC------CceEECCCCCEEEEEecC
Q 018242          209 SEDGNYILLAETTSCRILRYWLKT-------SKAGTIEIVAQLPGFP------DNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       209 ~~d~~~l~v~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~p------~~i~~d~~G~lwv~~~~~  266 (359)
                      +++| ..|.+..-+.+|.+|+++.       .+......-.+..-.|      .+-..+++|+..++.+.-
T Consensus       386 d~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~  455 (638)
T 3sbq_A          386 DGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKF  455 (638)
T ss_dssp             CSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESC
T ss_pred             CCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEeccc
Confidence            9999 5999999999999999852       2211111111122222      233457889888877653

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=91.39  E-value=12  Score=37.09  Aligned_cols=166  Identities=11%  Similarity=0.058  Sum_probs=84.7

Q ss_pred             CCCceEEEccCC-CeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC-CCeEE
Q 018242           34 IGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT-NGDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~G-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~-~g~l~  111 (359)
                      -.-.+|+++|.+ .++|+++..++|++.+-.+..|+.+...... .. . +.+    .  ........|++++. .+.+|
T Consensus        21 g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~-~~-~-~~~----~--~~~~~~~~ia~dp~~~~~~~   91 (763)
T 3a0f_A           21 GFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIIN-NA-L-AGN----G--ANLLGTESIALDPHNPDRLY   91 (763)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBT-TC-S-SSC----C--CCCCSEEEEECCTTCTTCEE
T ss_pred             CceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccc-cc-c-CCC----c--ccccceeEEEECCCCCCEEE
Confidence            466789999865 5689998778899988776667764311000 00 0 000    0  01122457888874 47788


Q ss_pred             EEeC-------CCcEEEEeCCCCeEEEEeecCCC--c-ccc-ccceEEEeCC--CCEEEEEeCCCccccccceeeeeecC
Q 018242          112 IADA-------YFGLLKVGPEGGLATAVATQSEG--I-PFR-FCNSLDIDQS--TGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       112 v~~~-------~~~i~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~l~~d~~--g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      ++..       ..+|++=+-.+...+.+......  . +.. ....|+++|.  +. +|++.                  
T Consensus        92 ~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~-v~a~~------------------  152 (763)
T 3a0f_A           92 LAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDE-LWFGS------------------  152 (763)
T ss_dssp             EEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTC-EEEEC------------------
T ss_pred             EEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCE-EEEEe------------------
Confidence            8753       23455543333445544321110  0 000 1146888864  45 88872                  


Q ss_pred             CCceEEEEeCCCCcEEEEeCC---C---CCCceEEEccC-CCEEEEEecCCCEEEE
Q 018242          179 KTGRLMKYDPATKQVTVLLGN---L---SFPNGVALSED-GNYILLAETTSCRILR  227 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~~---~---~~p~gia~~~d-~~~l~v~~~~~~~i~~  227 (359)
                      ..+.|++-+-.+...+.+..-   .   .....|+++|. .+.+|++....+.|++
T Consensus       153 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~  208 (763)
T 3a0f_A          153 RTQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWV  208 (763)
T ss_dssp             SSSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEE
T ss_pred             CCCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEE
Confidence            123566554333344433210   0   11235677764 3457887655433544

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=91.04  E-value=9.4  Score=38.10  Aligned_cols=162  Identities=12%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             CCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-CeEE
Q 018242           34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-GDLY  111 (359)
Q Consensus        34 ~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g~l~  111 (359)
                      ....+|+++|. ..++|++...++|++.+-.+..|+.+....       .++     ..  .......|++++.+ +.+|
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~-------~~~-----~~--~~~~i~~ia~dp~~~~~i~   80 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFI-------EAQ-----DM--NIMGTESIALDPNNPDRLY   80 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTC-------CGG-----GG--GGCSEEEEEEETTEEEEEE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCC-------Ccc-----cc--cCCceeEEEECCCCCCEEE
Confidence            35668889875 344899888888999987776676542100       000     00  11235678888733 6788


Q ss_pred             EEeCC------CcEEEEeCCCCeEEEEeecCCC---ccc-cccceEEEeCC-CCEEEEEeCCCccccccceeeeeecCCC
Q 018242          112 IADAY------FGLLKVGPEGGLATAVATQSEG---IPF-RFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       112 v~~~~------~~i~~~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ++...      .+|++-+-.+...+.+......   .+. ..+..++++|. .+++|++.                  ..
T Consensus        81 ~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~------------------~~  142 (789)
T 1sqj_A           81 LAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RT  142 (789)
T ss_dssp             EEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC------------------SS
T ss_pred             EEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe------------------cc
Confidence            87532      3455544344445554321110   011 12356888864 33488872                  12


Q ss_pred             ceEEEEeCCCCcEEEEeCC------CCCCceEEEcc-CCCEEEEEecCCCEEEE
Q 018242          181 GRLMKYDPATKQVTVLLGN------LSFPNGVALSE-DGNYILLAETTSCRILR  227 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~------~~~p~gia~~~-d~~~l~v~~~~~~~i~~  227 (359)
                      +.|++-+-.+...+.+...      ......++++| +++.+|++......|++
T Consensus       143 ~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~  196 (789)
T 1sqj_A          143 EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  196 (789)
T ss_dssp             SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence            3466554433344443211      01123566666 34467777654345654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.84  E-value=13  Score=36.43  Aligned_cols=160  Identities=8%  Similarity=-0.009  Sum_probs=88.4

Q ss_pred             cCCCeeEEecC----CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC--
Q 018242           43 ALGEGPYTGVS----DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY--  116 (359)
Q Consensus        43 ~~G~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~--  116 (359)
                      .++.++.++-.    ...+++||+.+++|+....+...        +    .. +....-+.++....++.+|+....  
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~--------~----~~-p~~R~~hs~~~~~~~~~lyv~GG~~~  462 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSS--------S----EV-PVARMCHTFTTISRNNQLLLIGGRKA  462 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCC--------S----CC-CCCCBSCEEEEETTTTEEEEECCBSS
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCC--------C----CC-CccccceEEEEEccCCEEEEEcCCCC
Confidence            45664444432    24689999999988876511000        0    00 011112344444226778886321  


Q ss_pred             -----CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          117 -----FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       117 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                           +.+.+||+.+.+++.+... +  ....-+..++-.+|+ ||+.--.               ...+.+++||+.++
T Consensus       463 ~~~~~~dv~~yd~~t~~W~~~~~~-p--~~R~~h~~~~~~~~~-iyv~GG~---------------~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          463 PHQGLSDNWIFDMKTREWSMIKSL-S--HTRFRHSACSLPDGN-VLILGGV---------------TEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTCBCCCCEEEETTTTEEEECCCC-S--BCCBSCEEEECTTSC-EEEECCB---------------CSSCSEEEEETTTT
T ss_pred             CCCccccEEEEeCCCCcEEECCCC-C--CCcccceEEEEcCCE-EEEECCC---------------CCCCCEEEEECCCC
Confidence                 2489999999988765321 1  111223444435788 9987211               01116999999988


Q ss_pred             cEEEEeCC--CCCC----ceEEEccCCCEEEEEecC-------CCEEEEEEcCCCC
Q 018242          192 QVTVLLGN--LSFP----NGVALSEDGNYILLAETT-------SCRILRYWLKTSK  234 (359)
Q Consensus       192 ~~~~~~~~--~~~p----~gia~~~d~~~l~v~~~~-------~~~i~~~~~~~~~  234 (359)
                      +...+...  ...|    ..++++.+.+.+|+.+-.       .+.+++||+..+.
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            77765431  1112    235555553457887633       3579999987653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.77  E-value=8.7  Score=32.76  Aligned_cols=138  Identities=12%  Similarity=0.151  Sum_probs=75.8

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEEEeCCCCe
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLKVGPEGGL  128 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~~~~~~~~  128 (359)
                      ..+..+|+.+++|+.....+                   ....-++++..  ++.||+....      +.+.++|+.+++
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p-------------------~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELP-------------------SRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCS-------------------SCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             CcEEEEcCcCCcEeEcccCC-------------------cccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCc
Confidence            46889999998887764211                   01112334433  6788886321      248999999998


Q ss_pred             EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc---e
Q 018242          129 ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN---G  205 (359)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~---g  205 (359)
                      .+.+.....  + ..-+.+++ -+++ ||+.--..            .......++++|+.+++.+.+. ....|.   .
T Consensus        89 W~~~~~~p~--~-r~~~~~~~-~~~~-iyv~GG~~------------~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~  150 (302)
T 2xn4_A           89 WTSVANMRD--R-RSTLGAAV-LNGL-LYAVGGFD------------GSTGLSSVEAYNIKSNEWFHVA-PMNTRRSSVG  150 (302)
T ss_dssp             EEEECCCSS--C-CBSCEEEE-ETTE-EEEEEEEC------------SSCEEEEEEEEETTTTEEEEEC-CCSSCCBSCE
T ss_pred             eeeCCCCCc--c-ccceEEEE-ECCE-EEEEcCCC------------CCccCceEEEEeCCCCeEeecC-CCCCcccCce
Confidence            877643111  1 11223333 3566 88861100            0011246899999988776653 222222   2


Q ss_pred             EEEccCCCEEEEEecC-------CCEEEEEEcCCC
Q 018242          206 VALSEDGNYILLAETT-------SCRILRYWLKTS  233 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~-------~~~i~~~~~~~~  233 (359)
                      .+. -++ .+|+..-.       .+.+++||+..+
T Consensus       151 ~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          151 VGV-VGG-LLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             EEE-ETT-EEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             EEE-ECC-EEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            222 244 47776422       346888987543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.39  E-value=12  Score=32.34  Aligned_cols=141  Identities=14%  Similarity=0.188  Sum_probs=73.8

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-----C-------cEEEE
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-----F-------GLLKV  122 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-----~-------~i~~~  122 (359)
                      ..+..||+.+++|.....+                  ......-+.++ .. ++.||+....     .       .+.++
T Consensus        24 ~~~~~yd~~~~~W~~~~~~------------------~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~   83 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALA------------------EQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQL   83 (318)
T ss_dssp             SEEEEEETTTTEEEEEEEC------------------TTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEE
T ss_pred             cceEEECCCCCceecccCC------------------ccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEE
Confidence            3589999999988763211                  00111112332 23 7788876431     0       17889


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCC
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSF  202 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~  202 (359)
                      |+.+++.+.+.....  + ..-+.+++. +++ ||+.--... .         .......++++|+.+++.+.+. ....
T Consensus        84 d~~~~~W~~~~~~p~--~-r~~~~~~~~-~~~-iyv~GG~~~-~---------~~~~~~~~~~yd~~~~~W~~~~-~~p~  147 (318)
T 2woz_A           84 DNVSSEWVGLPPLPS--A-RCLFGLGEV-DDK-IYVVAGKDL-Q---------TEASLDSVLCYDPVAAKWSEVK-NLPI  147 (318)
T ss_dssp             ETTTTEEEECSCBSS--C-BCSCEEEEE-TTE-EEEEEEEBT-T---------TCCEEEEEEEEETTTTEEEEEC-CCSS
T ss_pred             eCCCCcEEECCCCCc--c-ccccceEEE-CCE-EEEEcCccC-C---------CCcccceEEEEeCCCCCEeECC-CCCC
Confidence            999998876532111  1 122233333 566 888621000 0         0011246999999988776653 2222


Q ss_pred             C---ceEEEccCCCEEEEEecC------CCEEEEEEcCCC
Q 018242          203 P---NGVALSEDGNYILLAETT------SCRILRYWLKTS  233 (359)
Q Consensus       203 p---~gia~~~d~~~l~v~~~~------~~~i~~~~~~~~  233 (359)
                      +   ...+. .++ .+|+..-.      .+.+++||+..+
T Consensus       148 ~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          148 KVYGHNVIS-HNG-MIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             CEESCEEEE-ETT-EEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             cccccEEEE-ECC-EEEEEcCCCCCCCccceEEEEcCCCC
Confidence            2   12222 344 47776532      246889987543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.66  E-value=14  Score=32.40  Aligned_cols=154  Identities=10%  Similarity=0.040  Sum_probs=68.3

Q ss_pred             CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-------CCcEEEEeC--C
Q 018242           55 GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-------YFGLLKVGP--E  125 (359)
Q Consensus        55 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-------~~~i~~~~~--~  125 (359)
                      ..+.+||+.+++|+.....+                  .....-++++..  ++.||+...       ...+..++.  +
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p------------------~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~  227 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESP------------------WYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGN  227 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECS------------------SCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC--
T ss_pred             ccEEEEeCCCCcEEECCCCC------------------CCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCC
Confidence            57999999999888774221                  000111344444  678887632       234777765  7


Q ss_pred             CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccc--ce-eee--ee-cCCCceEEEEeCCCCcEEEEeCC
Q 018242          126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN--HI-SVI--LS-GDKTGRLMKYDPATKQVTVLLGN  199 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~--~~-~~~--~~-~~~~g~v~~~d~~~~~~~~~~~~  199 (359)
                      +.+++.+.....  +......-++..+++ ||+.--.. .....  +. ...  .. ......+.+||+++++.+.+. .
T Consensus       228 ~~~W~~~~~~~~--~~~~~~~~~~~~~~~-iyv~GG~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~-~  302 (357)
T 2uvk_A          228 NLKWNKLAPVSS--PDGVAGGFAGISNDS-LIFAGGAG-FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG-E  302 (357)
T ss_dssp             -CEEEECCCSST--TTCCBSCEEEEETTE-EEEECCEE-CTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE-E
T ss_pred             CCcEEecCCCCC--CcccccceEEEECCE-EEEEcCcc-ccCCcccccccceeccccccceeeEEEEecCCCceeeCC-C
Confidence            777766533211  111111223334566 88872100 00000  00 000  00 001125788999877766543 2


Q ss_pred             CCCCc--eEEEccCCCEEEEEecCC------CEEEEEEcCCCC
Q 018242          200 LSFPN--GVALSEDGNYILLAETTS------CRILRYWLKTSK  234 (359)
Q Consensus       200 ~~~p~--gia~~~d~~~l~v~~~~~------~~i~~~~~~~~~  234 (359)
                      +..|.  ..+...+++ +|+..-.+      +.++++++++++
T Consensus       303 ~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          303 LSQGRAYGVSLPWNNS-LLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             CSSCCBSSEEEEETTE-EEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             CCCCcccceeEEeCCE-EEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            22222  222333555 55544321      357777776554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.01  E-value=20  Score=31.68  Aligned_cols=25  Identities=28%  Similarity=0.141  Sum_probs=18.8

Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATA  131 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~  131 (359)
                      ++.+|+++..+.|+.+|.++|+..-
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W   34 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIW   34 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEE
Confidence            5677888777778888888887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=84.17  E-value=5.8  Score=35.13  Aligned_cols=23  Identities=4%  Similarity=-0.031  Sum_probs=19.2

Q ss_pred             eeEEecCCCEEEEEEcCCcceEE
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLH   69 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~   69 (359)
                      ++|+++.+|.|+.+|.++++...
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W   34 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIW   34 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEE
Confidence            48999999999999998876444

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=81.18  E-value=36  Score=33.67  Aligned_cols=161  Identities=13%  Similarity=0.048  Sum_probs=77.4

Q ss_pred             ceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec-CCCeEEEEe
Q 018242           37 ESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK-TNGDLYIAD  114 (359)
Q Consensus        37 ~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~-~~g~l~v~~  114 (359)
                      ..+++++. ..++|++. ++.|++-.-.+..|+.+...                 +........-|.+.+ .+++||++.
T Consensus       591 ~~i~~d~~~~~~~y~g~-~g~v~~S~DgG~tW~~~~~~-----------------lp~~~~~~~~i~~~~~~~~~l~~~~  652 (763)
T 3a0f_A          591 TGIAADRVQANTFYVYV-EGDFFVSTDGGKSYTKKGNG-----------------LPCCWTYTGTPVTSNLRAGELWVSV  652 (763)
T ss_dssp             SCEEECSSSTTCEEEEE-TTEEEEESSTTSBCEEECBT-----------------SCCSSCCCEEEEECSSSTTCEEEEE
T ss_pred             ceEEEeccCCCEEEEEc-CCCEEEEeCCCcCccccccC-----------------CCcccCccccEEECCCCCCcEEEEc
Confidence            36777763 34588874 47777654344446554210                 000000111156665 468899988


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCcccc--ccceEEEe-CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCC
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFR--FCNSLDID-QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATK  191 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~d-~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  191 (359)
                      ...+|++-+-.+..++.+.. .......  .-.++++. ++...||+.-..             .....++||+-+..+.
T Consensus       653 ~~~~l~~S~D~G~tW~~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~  718 (763)
T 3a0f_A          653 KGVGIYHSTDFGNTFTALAG-SGSSLNPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGG  718 (763)
T ss_dssp             TTTEEEEESSTTSBCEECTT-BTTTBEEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTS
T ss_pred             CCCeEEEEcCCCCCceEccC-CCcccccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCC
Confidence            66677776544445554421 1110000  00011212 222337776200             0012457887765555


Q ss_pred             cEEEEe---CCCCCCceEEEccCC-CEEEEEecCCCEEEEEEc
Q 018242          192 QVTVLL---GNLSFPNGVALSEDG-NYILLAETTSCRILRYWL  230 (359)
Q Consensus       192 ~~~~~~---~~~~~p~gia~~~d~-~~l~v~~~~~~~i~~~~~  230 (359)
                      ..+.+.   ..+..+..|+++|.. ..||++. ....|+.-++
T Consensus       719 tW~~~~~~~~~~~~~~~i~~~p~~~~~v~~~T-~GrGi~~g~~  760 (763)
T 3a0f_A          719 LWTRLNDDAHNYGGATVISGDPRIYGRVYIGM-NGRGIICAQA  760 (763)
T ss_dssp             CCEECSCTTCCTBCEEEEEECTTSTTEEEEEE-BSSCEEEEES
T ss_pred             CcEeccCccccCCCcceEEeCCCCCCEEEEeC-CCCeEEEEec
Confidence            555554   222223367777743 3477764 4456666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	359
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	1e-30
d1pjxa_	314	b.68.6.1 (A:) Diisopropylfluorophosphatase (phosph	7e-14
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	4e-06
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.001
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1xfda1	465	b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-lik	0.001
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.004
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  117 bits (293), Expect = 1e-30
 Identities = 44/229 (19%), Positives = 66/229 (28%), Gaps = 26/229 (11%)

Query: 124 PEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL 183
            E   +               N +            D            + L G     +
Sbjct: 132 QEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL-GLAWSFV 190

Query: 184 MKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ 243
             Y P    V V+     F NG+ +S DG Y+ +AE  + +I  Y    +   T   V  
Sbjct: 191 TYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS 248

Query: 244 LPGFPDNIKRSPRG-GFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLS 302
                DNI   P     WVG H     I       P           ++++I   L    
Sbjct: 249 FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPP--------GSEVLRIQDIL---- 296

Query: 303 GNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 351
                    SE+  V  +  E G  + +  +      G L IG+V    
Sbjct: 297 ---------SEEPKVTVVYAENGTVL-QGSTVAAVYKGKLLIGTVFHKA 335

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Length = 314

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

 Score = 69.3 bits (168), Expect = 7e-14
 Identities = 56/316 (17%), Positives = 101/316 (31%), Gaps = 44/316 (13%)

Query: 31  EGAIGPESLAFDALG-------EGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGA 83
           E   G E   FD  G       E    G   G I++      +     +   N  G    
Sbjct: 15  EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG---- 70

Query: 84  YEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRF 143
                       G P G   ++    L++AD   GLL V  +G         SEG   + 
Sbjct: 71  ------------GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQG 118

Query: 144 CNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP 203
           CN    D   G ++ T  + +    ++   +   +K G +  +    + + V      FP
Sbjct: 119 CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCFTTDGQMIQV-DTAFQFP 174

Query: 204 NGVALSEDGN----YILLAETTSCRILRYWLKTSKAGTIEIVA-----QLPGFPDNIKRS 254
           NG+A+    +     +++AET + ++  Y +K       + V         G  D +   
Sbjct: 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234

Query: 255 PRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGG-MAMRISE 313
                 V  +     I       P  G   +++     K  +  +        + +   E
Sbjct: 235 EDNNLLVA-NWGSSHIEVFG---PDGGQPKMRIRCPFEKPSN--LHFKPQTKTIFVTEHE 288

Query: 314 QGNVLEILEEI-GRKM 328
              V +   +  G+K 
Sbjct: 289 NNAVWKFEWQRNGKKQ 304

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 36/234 (15%), Positives = 61/234 (26%), Gaps = 32/234 (13%)

Query: 28  YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYD 87
                    E+LA    G    T    G I+    D  + +H                  
Sbjct: 22  TSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT---------------- 65

Query: 88  HAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSL 147
                 + G+  GL F  +NGDL         + V         V T        F N +
Sbjct: 66  ------VEGKVSGLAFT-SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI 118

Query: 148 DIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA 207
               S       DS         +        +G +    P     +         NG+ 
Sbjct: 119 TPL-SDTQYLTADSYRGAIWLIDV-----VQPSGSIWLEHPMLA-RSNSESVFPAANGLK 171

Query: 208 LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 261
               GN++ ++ T    +LR  + ++       +       D+      G  + 
Sbjct: 172 --RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG 223

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 187 DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG 246
           + A  ++       +F   +A + DG  I +       I+      +  G  +I A + G
Sbjct: 14  ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSI----TPDGNQQIHATVEG 68

Query: 247 FPDNIKRSPRGGFWVGIHSRRK 268
               +  +  G       +   
Sbjct: 69  KVSGLAFTSNGDLVATGWNADS 90

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 25/214 (11%), Positives = 57/214 (26%), Gaps = 3/214 (1%)

Query: 16  LFINSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP 75
           + + + + G       G   P+ LA D  G   Y    + R++                 
Sbjct: 39  VKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLPFDGL 97

Query: 76  NRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQ 135
           N                      +      +     +                     T 
Sbjct: 98  NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTD 157

Query: 136 SEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV 195
           ++        +   +Q         +          +V ++   T +++K    +   TV
Sbjct: 158 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 217

Query: 196 L-LGNLSFPNGVALSEDGNYILLAETTSCRILRY 228
           L    L+ P  VA+  D   + +A+  + R+++ 
Sbjct: 218 LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKL 250

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 22/191 (11%), Positives = 53/191 (27%), Gaps = 8/191 (4%)

Query: 173 VILSGDKTGRLMKYDPATKQV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 230
            ++  +    L   D A+  V  + ++ +   P    ++ D     +       I    L
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 231 KTSK----AGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIK 286
            T K    A    +  ++     +   SP G       +  + +            + + 
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL--NDHYVVKPPRLEVF 127

Query: 287 LPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGS 346
              D ++               MR ++ G++     +I +   ++           W   
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRK 187

Query: 347 VNMPYAGLYNY 357
                  LY +
Sbjct: 188 GYSAPDVLYFW 198

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 465

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 178 DKTGRLMKYDPATKQVTVLLGNLSF----PNGVALSEDGNYILLAETTSCRILRY 228
           ++ G +  ++  T   TVL+              +S D  Y L +      I ++
Sbjct: 34  EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFS-YNVEPIYQH 87

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 13/107 (12%)

Query: 179 KTGRLMKYDPATKQVTVLLGNLSF------PNGVALSEDGNYILLAETTSCRILR----- 227
           +   ++ ++      +V L N +F       N  ++S DG +ILL      +  R     
Sbjct: 34  QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE-YNYVKQWRHSYTA 92

Query: 228 -YWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKL 273
            Y +       +    ++P     +  SP G     + +    +   
Sbjct: 93  SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIE 139

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 232
           +  ++  +   D  + +VT  +   S P G  +S DG  + +A   S  +      T
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 22/212 (10%), Positives = 50/212 (23%), Gaps = 21/212 (9%)

Query: 49  YTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG 108
           +    DG + K             T                             +++  G
Sbjct: 162 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPED--------------EFLINHPAYSQKAG 207

Query: 109 DLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRR 168
            L        + ++    G A  +            +         + Y       +   
Sbjct: 208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 267

Query: 169 NHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRY 228
           +          +  ++  D  T +           + + +S+D   +L A +T  + L  
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327

Query: 229 WLKTSKAGTIEIVAQLPG---FPDNIKRSPRG 257
                 A + E +  +      P  I  +  G
Sbjct: 328 H----DAESGEELRSVNQLGHGPQVITTADMG 355

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 176 SGDKTGRLMKYDPATK-QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 234
              +   +   +      +T ++        + +S D  Y+ +      R+L Y +    
Sbjct: 11  PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 70

Query: 235 -AGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 264
            A T    + LPG   +I    +G F     
Sbjct: 71  GALTFAAESALPGSLTHISTDHQGQFVFVGS 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	359
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.85
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.64
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.58
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.57
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.55
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.47
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.44
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.42
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.41
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.39
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.17
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.17
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.15
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.14
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.13
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.11
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.1
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.08
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.07
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.06
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.05
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.04
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.04
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.01
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.98
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.97
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.91
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.83
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.82
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.79
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.72
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.67
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.59
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.48
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.47
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	98.45
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.44
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.37
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.1
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.03
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	97.68
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.65
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.62
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.62
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.6
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.41
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.29
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.89
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.45
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.14
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	96.03
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.73
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.35
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	95.14
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	94.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.43
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	94.15
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.07
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.69
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.69
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	91.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.83
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.52
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.49
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	88.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.57

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=2.7e-27  Score=211.74  Aligned_cols=251  Identities=19%  Similarity=0.272  Sum_probs=176.3

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEecC-------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcc
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGVS-------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRP   98 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   98 (359)
                      ++.-...+.+||+++++++|++|+++..       +++|+++|++++....+..+                ......+.|
T Consensus        10 ~~~v~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~----------------~~~~~~g~P   73 (314)
T d1pjxa_          10 FTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----------------EVNGYGGIP   73 (314)
T ss_dssp             CEEEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----------------EETTEECCE
T ss_pred             eEEeecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC----------------ccccCCCcc
Confidence            3455566899999999999995545433       36899999998866555321                112233569


Q ss_pred             eEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242           99 LGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      .|++++++++.+|+++..++|.+++++++..+.+.....+.++..||++++|++|+ +||+|+...........  ....
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~--~~~~  150 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR--SMQE  150 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB--TTSS
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccc--eecc
Confidence            99999995567999998888999999987654433333445667899999999999 99998764322111110  1123


Q ss_pred             CCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCC----EEEEEecCCCEEEEEEcCCC-CCcceeEeecC----CCCCC
Q 018242          179 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN----YILLAETTSCRILRYWLKTS-KAGTIEIVAQL----PGFPD  249 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~----~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~----~~~p~  249 (359)
                      ..|.|++++++ ++...+......|+|++++++++    .||++++.+++|++|+++.+ .....+.+...    .+.|+
T Consensus       151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            45789999987 45666666778899999998765    69999999999999998644 33334444442    23589


Q ss_pred             ceEECCCCCEEEEEecCCCccccccccCCcc-ceeeecCCccceeeeeecccc
Q 018242          250 NIKRSPRGGFWVGIHSRRKGISKLVLSFPWI-GNVLIKLPIDIVKIHSSLVKL  301 (359)
Q Consensus       250 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~  301 (359)
                      ||++|++|+||++.++.+.     +.+++++ +++...++.+...+++++++.
T Consensus       230 GiavD~~GnlyVa~~~~g~-----I~~~dp~~g~~~~~i~~p~~~~t~~afg~  277 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSH-----IEVFGPDGGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTE-----EEEECTTCBSCSEEEECSSSCEEEEEECT
T ss_pred             eeEEecCCcEEEEEcCCCE-----EEEEeCCCCEEEEEEECCCCCEEEEEEeC
Confidence            9999999999999987664     5556554 444555555555555555544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.94  E-value=2.9e-25  Score=196.62  Aligned_cols=234  Identities=18%  Similarity=0.195  Sum_probs=183.1

Q ss_pred             EeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           28 YQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      +...+..--|+..+++ +|+++|++..+++|+++|+++++.+.+.                      ....+.+++..+ 
T Consensus        12 ~~~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~----------------------~~~~~~~i~~~~-   68 (295)
T d2ghsa1          12 LDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA----------------------LPFMGSALAKIS-   68 (295)
T ss_dssp             EECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE----------------------CSSCEEEEEEEE-
T ss_pred             EcCCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE----------------------CCCCcEEEEEec-
Confidence            3334445558999996 6888999999999999999988655442                      123467888888 


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          107 NGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       107 ~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                      +|++|++.. ++|+++|+++++.+.+.......+...++++.+|++|+ +|++++...           .....+.++++
T Consensus        69 dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~-----------~~~~~g~l~~~  135 (295)
T d2ghsa1          69 DSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRK-----------AETGAGSIYHV  135 (295)
T ss_dssp             TTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETT-----------CCTTCEEEEEE
T ss_pred             CCCEEEEEe-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEecccc-----------ccccceeEeee
Confidence            899999974 68999999999988776544455567899999999999 999975321           11234567777


Q ss_pred             eCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCC---CcceeEeec---CCCCCCceEECCCCCEE
Q 018242          187 DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK---AGTIEIVAQ---LPGFPDNIKRSPRGGFW  260 (359)
Q Consensus       187 d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~---~~~~p~~i~~d~~G~lw  260 (359)
                      +.  +++..+......|+|++++++++.+|++++..+.|++|+++...   ......+..   ..+.|+++++|++|+||
T Consensus       136 ~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW  213 (295)
T d2ghsa1         136 AK--GKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW  213 (295)
T ss_dssp             ET--TEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred             cC--CcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence            64  56666666778899999999999999999999999999986432   223334443   34679999999999999


Q ss_pred             EEEecCCCccccccccCCccceeeecCCccceeeeeecccccCc
Q 018242          261 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN  304 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  304 (359)
                      +|.+.++.     +.+++++|+++..+.+|.+.+++|+||+...
T Consensus       214 va~~~~g~-----V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         214 NARWGEGA-----VDRYDTDGNHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             EEEETTTE-----EEEECTTCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             eeeeCCCc-----eEEecCCCcEeeEecCCCCceEEEEEeCCCC
Confidence            99998876     8889999999999999989999999987554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=3.2e-25  Score=198.69  Aligned_cols=220  Identities=21%  Similarity=0.252  Sum_probs=169.5

Q ss_pred             CCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      ....|++++|++|++||++..+++|+++++++++.....                    ......|.||++++ +|+||+
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~--------------------~~~~~~p~gla~~~-dG~l~v   97 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--------------------VSHKANPAAIKIHK-DGRLFV   97 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------ECSSSSEEEEEECT-TSCEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE--------------------eCCCCCeeEEEECC-CCCEEE
Confidence            355699999999998888999999999999987544321                    22335689999999 899999


Q ss_pred             EeCC-----CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          113 ADAY-----FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       113 ~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      ++..     .++..++..++.........  .....+++++++++|+ +|+++.....           ....+.+++++
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~nd~~~d~~G~-l~vtd~~~~~-----------~~~~g~v~~~~  163 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGG-FYFTDFRGYS-----------TNPLGGVYYVS  163 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSC-EEEEECCCBT-----------TBCCEEEEEEC
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCC--CcccCCcceeEEeccc-eeeccccccc-----------ccCcceeEEEe
Confidence            9643     25888888887765544322  2345789999999999 9999865321           12346799999


Q ss_pred             CCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCccee---E-eec--CCCCCCceEECCCCCEEE
Q 018242          188 PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIE---I-VAQ--LPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       188 ~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~---~-~~~--~~~~p~~i~~d~~G~lwv  261 (359)
                      ++++.++.+..++..|+||++++|++.||++++..++|++|+++.+......   . ...  ....|+||++|++|+|||
T Consensus       164 ~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~V  243 (319)
T d2dg1a1         164 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV  243 (319)
T ss_dssp             TTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE
T ss_pred             cccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEE
Confidence            9877777777778889999999999999999999999999998754322111   1 111  224599999999999999


Q ss_pred             EEecCCCccccccccCCccceeeecCCccce
Q 018242          262 GIHSRRKGISKLVLSFPWIGNVLIKLPIDIV  292 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  292 (359)
                      +.+.++.     +.+++++|+++.++.+|..
T Consensus       244 a~~~~g~-----V~~~~p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         244 AMYGQGR-----VLVFNKRGYPIGQILIPGR  269 (319)
T ss_dssp             EEETTTE-----EEEECTTSCEEEEEECTTG
T ss_pred             EEcCCCE-----EEEECCCCcEEEEEeCCCc
Confidence            9998876     8889999999998877754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=7.3e-21  Score=170.63  Aligned_cols=287  Identities=18%  Similarity=0.189  Sum_probs=183.7

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEecC------------CCEEEEEEcCCcc--eEEEeecCCCCCCCCCCcccccccc
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGVS------------DGRIIKWHQDQRR--WLHFARTSPNRDGCEGAYEYDHAAK   91 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~~------------~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   91 (359)
                      |++-.+...+||+|+++++|..++++..            .|.|+.+|+++..  ...+.....              ..
T Consensus        27 C~~i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~--------------~~   92 (340)
T d1v04a_          27 CNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN--------------TL   92 (340)
T ss_dssp             CEECTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECS--------------SS
T ss_pred             ceEcCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCC--------------CC
Confidence            3444455579999999999984444321            2677777765432  111111000              00


Q ss_pred             cccCCcceEEEEecC-CC--eEEEEeCC-C----cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCC
Q 018242           92 EHICGRPLGLCFNKT-NG--DLYIADAY-F----GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSS  163 (359)
Q Consensus        92 ~~~~~~p~gi~~~~~-~g--~l~v~~~~-~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~  163 (359)
                      ......|+||.+-.+ +|  .||+.+.. .    .++.++.++.+.+++. .........||++++..+|. +|+|+...
T Consensus        93 ~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~-~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~  170 (340)
T d1v04a_          93 DISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK-TIRHKLLPSVNDIVAVGPEH-FYATNDHY  170 (340)
T ss_dssp             CGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE-EECCTTCSSEEEEEEEETTE-EEEEESCS
T ss_pred             CCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEe-ecCCccccCccceEEecCCC-EEEecCcc
Confidence            112246899876332 44  47777752 2    2666777776665443 33444667899999999999 99997542


Q ss_pred             ccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec
Q 018242          164 QFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ  243 (359)
Q Consensus       164 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (359)
                      .........+...+...+.|+.++++  ..+.+..++..||||++++|++.+||+++...+|++|++++++.........
T Consensus       171 ~~~~~~~~~e~~~~~~~g~v~~~~~~--~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~  248 (340)
T d1v04a_         171 FIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS  248 (340)
T ss_dssp             CCSHHHHHHHHHTTCCCEEEEEECSS--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             CcChhhhhhhHhhcCCceeEEEEcCC--ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec
Confidence            11110011111223456678888874  5666667788999999999999999999999999999998664433334445


Q ss_pred             CCCCCCceEECC-CCCEEEEEecCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEE---C-CCCCEE
Q 018242          244 LPGFPDNIKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRI---S-EQGNVL  318 (359)
Q Consensus       244 ~~~~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~g~~~  318 (359)
                      +++.|+|+.+|+ +|.+|++.......    .....+.      .+.+               ..+.++   + .++.+.
T Consensus       249 l~~~pDNi~~d~~~g~lwva~~p~~~~----~~~~~~~------~~~~---------------s~v~ri~~~~~~~~~v~  303 (340)
T d1v04a_         249 FDTLVDNISVDPVTGDLWVGCHPNGMR----IFFYDAE------NPPG---------------SEVLRIQDILSEEPKVT  303 (340)
T ss_dssp             CSSEEEEEEECTTTCCEEEEEESCHHH----HHSCCTT------SCCC---------------EEEEEEECTTSSSCEEE
T ss_pred             CCCCCCccEEecCCCEEEEEECCcccc----hhhhccc------CCCC---------------ceeEEEEeccCCCCeEE
Confidence            888999999996 78999998864321    0111110      0000               223333   2 345566


Q ss_pred             EEEEccCCceeeceEEEEEeCCEEEEecCCCCeEEEEcC
Q 018242          319 EILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNY  357 (359)
Q Consensus       319 ~~~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~  357 (359)
                      +.|.. +|......+.+...+|+||+|+...+.| .|++
T Consensus       304 ~~~~~-~G~~~~~~T~a~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         304 VVYAE-NGTVLQGSTVAAVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EEEEE-CSSSSCSEEEEEEETTEEEEEESSSCEE-EEEC
T ss_pred             EEEeC-CCcEeeceEEEEEECCEEEEEeeeCCce-EecC
Confidence            66665 6777778888888899999999999988 6875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=1.6e-19  Score=156.47  Aligned_cols=235  Identities=18%  Similarity=0.260  Sum_probs=161.6

Q ss_pred             CCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .+|++|+++++|++|+++. ..+++.++++.+.....+                    .......|.|+++++ ++++|+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~p~gvav~~-~g~i~v   72 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--------------------PFNGLYQPQGLAVDG-AGTVYV   72 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC--------------------CCCSCCSCCCEEECT-TCCEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe--------------------ccCCccCceEEEEcC-CCCEEE
Confidence            4899999999999555554 346888888776532221                    112235689999999 899999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ++..+++.++...+...... .   ......|++++++++|+ +|+++..                 ...++++++.+..
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~-~---~~~~~~p~~iavd~~g~-i~v~d~~-----------------~~~~~~~~~~~~~  130 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVL-P---FDGLNYPEGLAVDTQGA-VYVADRG-----------------NNRVVKLAAGSKT  130 (260)
T ss_dssp             EETTTEEEEECTTCSCCEEC-C---CCSCCSEEEEEECTTCC-EEEEEGG-----------------GTEEEEECTTCSS
T ss_pred             eeeeeceeeeeeeccceeee-e---eeeeeecccccccccce-eEeeccc-----------------cccccccccccce
Confidence            99887777666544332221 1   11345789999999999 9999653                 3468888887544


Q ss_pred             EEEE-eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEEEEecCCCcc
Q 018242          193 VTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHSRRKGI  270 (359)
Q Consensus       193 ~~~~-~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~~~~~~  270 (359)
                      .... ..+...|++|+++++++ +|+++..+++|.+++.++..   ...+. .....|.+|++|++|+||++...++   
T Consensus       131 ~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~---  203 (260)
T d1rwia_         131 QTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTN---  203 (260)
T ss_dssp             CEECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTTT---
T ss_pred             eeeeeecccCCcceeeecCCCC-Eeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecCCC---
Confidence            4333 24567899999999987 89999999999999865431   12222 1224589999999999999997543   


Q ss_pred             ccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEEEecCCC
Q 018242          271 SKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLWIGSVNM  349 (359)
Q Consensus       271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~ig~~~~  349 (359)
                                                          .+.++++++.....+.. .+  ...+.++..+ +|+||++++.+
T Consensus       204 ------------------------------------~i~~~~~~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         204 ------------------------------------QVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             ------------------------------------EEEEECTTCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGG
T ss_pred             ------------------------------------EEEEEeCCCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCC
Confidence                                                45667776665444321 22  3455666665 78999999999


Q ss_pred             CeEEEEcC
Q 018242          350 PYAGLYNY  357 (359)
Q Consensus       350 ~~l~~~~~  357 (359)
                      ++|.++..
T Consensus       245 ~rI~~i~~  252 (260)
T d1rwia_         245 DRVVKLTS  252 (260)
T ss_dssp             TEEEEECC
T ss_pred             CEEEEEeC
Confidence            99998864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=1.2e-18  Score=152.41  Aligned_cols=246  Identities=13%  Similarity=0.234  Sum_probs=170.9

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ++++.|.+|+++++|++++++..+++|.++|+++.-.+.+....               ........|.++++..+.+..
T Consensus        20 g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~~~~   84 (279)
T d1q7fa_          20 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG---------------KRDSQLLYPNRVAVVRNSGDI   84 (279)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS---------------SSTTCBSSEEEEEEETTTTEE
T ss_pred             CeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccC---------------CCccccccccccccccccccc
Confidence            35889999999999996666778899999999875444442110               011222458889888756776


Q ss_pred             EEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          111 YIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       111 ~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      +++...  ..|.+++..+.....+.    ......|++++++++|+ +|+++..                 .+.+.++++
T Consensus        85 ~~~~~~~~~~i~~~~~~g~~~~~~~----~~~~~~p~~~avd~~G~-i~v~~~~-----------------~~~~~~~~~  142 (279)
T d1q7fa_          85 IVTERSPTHQIQIYNQYGQFVRKFG----ATILQHPRGVTVDNKGR-IIVVECK-----------------VMRVIIFDQ  142 (279)
T ss_dssp             EEEECGGGCEEEEECTTSCEEEEEC----TTTCSCEEEEEECTTSC-EEEEETT-----------------TTEEEEECT
T ss_pred             ceeccCCccccccccccccceeecC----CCcccccceeccccCCc-EEEEeec-----------------cceeeEecc
Confidence            665432  35778887765544331    22345788999999999 9999654                 347888998


Q ss_pred             CCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEe
Q 018242          189 ATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       189 ~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      ++..+..+.  .....|.+++++++++ +|+++...++|++|+.++..   ...+..  ....|.+|++|++|+|||+..
T Consensus       143 ~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         143 NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             CCceeecccccccccccceeeecccee-EEeeeccccceeeeecCCce---eeeecccccccCCcccccccCCeEEEEEC
Confidence            855444432  3456788999998875 89999999999999976532   222222  223589999999999999986


Q ss_pred             cCCCccccccccCCccceeeecCCccceeeeeecccccCcceEEEEECCCCCEEEEEEccCCceeeceEEEEEe-CCEEE
Q 018242          265 SRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEK-DGNLW  343 (359)
Q Consensus       265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~-~g~l~  343 (359)
                      .++                                      ..+..|+++|+.+..+.....  ...+..+... +|+||
T Consensus       219 ~~~--------------------------------------~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~  258 (279)
T d1q7fa_         219 HNN--------------------------------------FNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVV  258 (279)
T ss_dssp             SSS--------------------------------------CEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEE
T ss_pred             CCC--------------------------------------cEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEE
Confidence            433                                      246678888887777654221  2345555444 88999


Q ss_pred             EecCCCCeEEEEcCC
Q 018242          344 IGSVNMPYAGLYNYS  358 (359)
Q Consensus       344 ig~~~~~~l~~~~~~  358 (359)
                      +.+. +++|.++++-
T Consensus       259 V~~~-n~~v~~fr~~  272 (279)
T d1q7fa_         259 LASK-DYRLYIYRYV  272 (279)
T ss_dssp             EEET-TTEEEEEECS
T ss_pred             EEeC-CCeEEEEEee
Confidence            9985 7889998863

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.83  E-value=2.4e-18  Score=152.24  Aligned_cols=198  Identities=21%  Similarity=0.204  Sum_probs=139.5

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..||++++++||++|+++..+++|+++++++. .+.+.                     .....|.++++++ +|++|++
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~---------------------~~~~~~~gla~~~-dG~l~v~   84 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA---------------------TVEGKVSGLAFTS-NGDLVAT   84 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE---------------------ECSSEEEEEEECT-TSCEEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEE---------------------cCCCCcceEEEcC-CCCeEEE
Confidence            46999999999996667788899999999875 33322                     2335689999999 8999999


Q ss_pred             eCCC-cEEEEeC--CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAYF-GLLKVGP--EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +... .+.+++.  ..+..+.+....   ....+++++++++|+ +|++++.                 .+.++++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~i~~~~~g~-~~v~~~~-----------------~~~i~~~~~~~  143 (302)
T d2p4oa1          85 GWNADSIPVVSLVKSDGTVETLLTLP---DAIFLNGITPLSDTQ-YLTADSY-----------------RGAIWLIDVVQ  143 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECT---TCSCEEEEEESSSSE-EEEEETT-----------------TTEEEEEETTT
T ss_pred             ecCCceEEEEEecccccceeeccccC---CccccceeEEccCCC-EEeeccc-----------------cccceeeeccC
Confidence            7543 4555543  334444443321   234689999999999 9999754                 45799999887


Q ss_pred             CcEEEEeC-----------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCC-cceeEeecCCCCCCceEECCCCC
Q 018242          191 KQVTVLLG-----------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSPRGG  258 (359)
Q Consensus       191 ~~~~~~~~-----------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~G~  258 (359)
                      +.......           ....+++++++  ++.+|++++..++|++++.+.... .....+.. ...|++|++|++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~pdgia~d~dG~  220 (302)
T d2p4oa1         144 PSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN  220 (302)
T ss_dssp             TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC
T ss_pred             CcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccC-CCCCcceEECCCCC
Confidence            76554321           12345677664  567999999999999999875432 22223323 34599999999999


Q ss_pred             EEEEEecCCCccccccccCCcccee
Q 018242          259 FWVGIHSRRKGISKLVLSFPWIGNV  283 (359)
Q Consensus       259 lwv~~~~~~~~~~~~~~~~~~~g~~  283 (359)
                      ||++....+.     +.+++++|+.
T Consensus       221 l~va~~~~~~-----V~~i~p~G~~  240 (302)
T d2p4oa1         221 LYGATHIYNS-----VVRIAPDRST  240 (302)
T ss_dssp             EEEECBTTCC-----EEEECTTCCE
T ss_pred             EEEEEcCCCc-----EEEECCCCCE
Confidence            9999987654     5555555553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=5.8e-17  Score=140.02  Aligned_cols=194  Identities=18%  Similarity=0.290  Sum_probs=136.5

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ....++...|++++++++|+ +|++...+.+.++...+.....                    ........|.+|++++ 
T Consensus        50 ~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~--------------------~~~~~~~~p~~iavd~-  107 (260)
T d1rwia_          50 VLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTV--------------------LPFDGLNYPEGLAVDT-  107 (260)
T ss_dssp             ECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEE--------------------CCCCSCCSEEEEEECT-
T ss_pred             EeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceee--------------------eeeeeeeecccccccc-
Confidence            33345578999999999999 5655555556655554432111                    1112235689999999 


Q ss_pred             CCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          107 NGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       107 ~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      ++++|+++..+ .+.+++..+.......    ......|++|+++++|+ +|+++..                 .+.|++
T Consensus       108 ~g~i~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~-~~v~~~~-----------------~~~i~~  165 (260)
T d1rwia_         108 QGAVYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGN-VYVTDTD-----------------NNRVVK  165 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECTTCSSCEECC----CCSCCSCCEEEECTTCC-EEEEEGG-----------------GTEEEE
T ss_pred             cceeEeeccccccccccccccceeeeee----ecccCCcceeeecCCCC-Eeeeccc-----------------cccccc
Confidence            88999998643 5888887765533221    12345788999999999 9999654                 357999


Q ss_pred             EeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECCCCCEEEEE
Q 018242          186 YDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       186 ~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~lwv~~  263 (359)
                      +++++....... ..+..|.+++++++|+ |||++..+++|++++.+...   ...+.. .-..|.+|++|++|+||++.
T Consensus       166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad  241 (260)
T d1rwia_         166 LEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVAD  241 (260)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEE
T ss_pred             cccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEE
Confidence            998865554443 4567899999999987 89999999999999754431   122222 12358999999999999998


Q ss_pred             ecCCC
Q 018242          264 HSRRK  268 (359)
Q Consensus       264 ~~~~~  268 (359)
                      +.++.
T Consensus       242 ~~~~r  246 (260)
T d1rwia_         242 RGNDR  246 (260)
T ss_dssp             GGGTE
T ss_pred             CCCCE
Confidence            87654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3e-14  Score=122.71  Aligned_cols=189  Identities=13%  Similarity=0.139  Sum_probs=139.1

Q ss_pred             CceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      +.+|++|.. ++++|++...+.|++.+.++...+.+.                    ......|.+|++|...++||+++
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~--------------------~~~~~~p~~iAvD~~~~~lY~~d   97 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--------------------RQDLGSPEGIALDHLGRTIFWTD   97 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--------------------CTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE--------------------EeccccccEEEEeccCCeEEEec
Confidence            457888865 567778888899999999876444331                    22335689999998799999998


Q ss_pred             CCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ... .|.++++++...+.+...    ....|.+|++||.+.++|+++.+.               ....|++.+.++...
T Consensus        98 ~~~~~I~~~~~dg~~~~~l~~~----~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~  158 (263)
T d1npea_          98 SQLDRIEVAKMDGTQRRVLFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNR  158 (263)
T ss_dssp             TTTTEEEEEETTSCSCEEEECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCC
T ss_pred             cCCCEEEEEecCCceEEEEecc----cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCc
Confidence            754 699999987765544331    235788999999877799997542               234699999876544


Q ss_pred             EE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          194 TV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       194 ~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      +. +..+...|+++++++.++.|||++...+.|.++++++.   ..+.+......|.+|+++ +++||++++..+
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQYPFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCCSEEEEEEE-TTEEEEEETTTT
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCCCcEEEEEE-CCEEEEEECCCC
Confidence            44 34567889999999988899999999999999998653   223333322348899998 578999998754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.7e-14  Score=121.19  Aligned_cols=199  Identities=13%  Similarity=0.131  Sum_probs=140.1

Q ss_pred             eCCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           30 IEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        30 ~~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      ++....|.+|++|.. ++++|++...+.|++.+.++.......               . .........|.||++|...+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~---------------~-~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------------D-TVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---------------E-EEECSSCSCCCEEEEETTTT
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce---------------E-EEEeCCCCCcceEEEeeccc
Confidence            345678889999975 567778888899999887653111000               0 01223345688999998899


Q ss_pred             eEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          109 DLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       109 ~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      +||+++... .|.++++++...+.+...    ....|.+|++|+..++||+++.+                ..+.|++.+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~  149 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGG  149 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEec
Confidence            999998754 599999988765544331    23468899999866569999754                235799999


Q ss_pred             CCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cC--CCCCCceEECCCCCEEEEE
Q 018242          188 PATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QL--PGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       188 ~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~--~~~p~~i~~d~~G~lwv~~  263 (359)
                      .++...+.+. .....|+|+++++.++.|||++...+.|.++++++..   .+.+. ..  ...|.+|+++ +++||++.
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td  225 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEE
Confidence            9865555443 5677899999999888999999999999999987642   23332 22  2347789998 57899998


Q ss_pred             ecCCC
Q 018242          264 HSRRK  268 (359)
Q Consensus       264 ~~~~~  268 (359)
                      +..+.
T Consensus       226 ~~~~~  230 (266)
T d1ijqa1         226 IINEA  230 (266)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            77553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.58  E-value=1.4e-13  Score=121.82  Aligned_cols=150  Identities=16%  Similarity=0.164  Sum_probs=101.8

Q ss_pred             cCCcceEEEEecCCCeEEEEeCC--------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcc
Q 018242           94 ICGRPLGLCFNKTNGDLYIADAY--------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQF  165 (359)
Q Consensus        94 ~~~~p~gi~~~~~~g~l~v~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~  165 (359)
                      ....+.|+++++ +|++|+++..        +.|+++++++++.+.+...........|++++++++|+++|+++..   
T Consensus        16 ~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~---   91 (314)
T d1pjxa_          16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR---   91 (314)
T ss_dssp             CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---
T ss_pred             CCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC---
Confidence            334577999999 8999998653        2499999999887655432222223468999999999878888532   


Q ss_pred             ccccceeeeeecCCCceEEEEeCCCCcEEEEeCC-----CCCCceEEEccCCCEEEEEecC---------------CCEE
Q 018242          166 QRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN-----LSFPNGVALSEDGNYILLAETT---------------SCRI  225 (359)
Q Consensus       166 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~d~~~l~v~~~~---------------~~~i  225 (359)
                                     .++.+++++++........     +..|+.++++++|+ +|+++..               .++|
T Consensus        92 ---------------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_          92 ---------------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             ---------------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             ---------------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceE
Confidence                           3699999986544433221     34689999999997 8998753               2478


Q ss_pred             EEEEcCCCCCcceeEeecCCCCCCceEECCCCC-----EEEEEecCC
Q 018242          226 LRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-----FWVGIHSRR  267 (359)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-----lwv~~~~~~  267 (359)
                      ++++.++.    ...+...-..|+++++++++.     ||++....+
T Consensus       156 ~~~~~dg~----~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~  198 (314)
T d1pjxa_         156 YCFTTDGQ----MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             EEECTTSC----EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             EEEeecCc----eeEeeCCcceeeeeEECCCCCcceeEEEEEeeccc
Confidence            88865432    222222123488999977653     888877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.57  E-value=5.4e-12  Score=109.11  Aligned_cols=255  Identities=12%  Similarity=0.144  Sum_probs=156.7

Q ss_pred             eEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCC
Q 018242           48 PYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPE  125 (359)
Q Consensus        48 l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~  125 (359)
                      +|+ ...++.|..||++++++..                    .+ .....|++++++|++..||++... +.|..+|..
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~--------------------~i-~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTA--------------------TI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEE--------------------EE-ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEECCCCEEEEEECCCCeEEE--------------------EE-ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            555 4677899999999885432                    11 233568999999955668888654 459999999


Q ss_pred             CCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCce
Q 018242          126 GGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG  205 (359)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~g  205 (359)
                      +++......     ....+.+++++++|++++++...                 ...+..++..+++..........+..
T Consensus        63 t~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (301)
T d1l0qa2          63 TNNVIATVP-----AGSSPQGVAVSPDGKQVYVTNMA-----------------SSTLSVIDTTSNTVAGTVKTGKSPLG  120 (301)
T ss_dssp             TTEEEEEEE-----CSSSEEEEEECTTSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             CCceeeeee-----ccccccccccccccccccccccc-----------------cceeeecccccceeeeeccccccceE
Confidence            887543322     12357889999999967776432                 34677888887766655555567889


Q ss_pred             EEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCCCccccccccC-Ccccee
Q 018242          206 VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSF-PWIGNV  283 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~-~~~g~~  283 (359)
                      +++++|++.++++...+..+..++.....   ..........|..++++++++ +|++......     .... ....+.
T Consensus       121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  192 (301)
T d1l0qa2         121 LALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTVSVGRSPKGIAVTPDGTKVYVANFDSMS-----ISVIDTVTNSV  192 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEECCSSEEEEEECTTSSEEEEEETTTTE-----EEEEETTTTEE
T ss_pred             EEeecCCCeeeeeeccccceeeeeccccc---eeeecccCCCceEEEeeccccceeeecccccc-----cccccccceee
Confidence            99999999999999888889988864431   111122233477888988876 6666655432     2222 223333


Q ss_pred             eecCCccceeeeeecccccCcc----------eEEEEECCC-CCEEEEEEccCCceeeceEEEEEe--CCEEEEecCCCC
Q 018242          284 LIKLPIDIVKIHSSLVKLSGNG----------GMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEK--DGNLWIGSVNMP  350 (359)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~--~g~l~ig~~~~~  350 (359)
                      ...+..+ ..+..+.+......          +.+..+|.. ++.+..+..  +   ..+..+...  +.+||+++..++
T Consensus       193 ~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~---~~~~~va~spdg~~l~va~~~~~  266 (301)
T d1l0qa2         193 IDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--G---PDPAGIAVTPDGKKVYVALSFCN  266 (301)
T ss_dssp             EEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--C---SSEEEEEECTTSSEEEEEETTTT
T ss_pred             eeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--C---CCEEEEEEeCCCCEEEEEECCCC
Confidence            3333322 12223333322220          123333322 222222221  1   133445443  457999998899


Q ss_pred             eEEEEcCCC
Q 018242          351 YAGLYNYSS  359 (359)
Q Consensus       351 ~l~~~~~~~  359 (359)
                      .|.++++++
T Consensus       267 ~i~v~D~~t  275 (301)
T d1l0qa2         267 TVSVIDTAT  275 (301)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.57  E-value=3.6e-13  Score=119.33  Aligned_cols=192  Identities=14%  Similarity=0.210  Sum_probs=129.9

Q ss_pred             EEEeeCCCCCCceEEEccCCCeeEEec-----CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceE
Q 018242           26 VQYQIEGAIGPESLAFDALGEGPYTGV-----SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLG  100 (359)
Q Consensus        26 ~~~~~~~~~~p~~i~~~~~G~~l~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g  100 (359)
                      .....+....|.+|++++||+ +|++.     ..+.+..++..+.......                  ........|..
T Consensus        74 ~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~~~~~~~------------------~~~~~~~~~nd  134 (319)
T d2dg1a1          74 KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDII------------------EDLSTAYCIDD  134 (319)
T ss_dssp             EEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEE------------------CSSSSCCCEEE
T ss_pred             EEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCceeeeec------------------cCCCcccCCcc
Confidence            344444456899999999999 55543     2367888888876544432                  11122345788


Q ss_pred             EEEecCCCeEEEEeCCC-------cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242          101 LCFNKTNGDLYIADAYF-------GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus       101 i~~~~~~g~l~v~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      +++++ +|++|+++...       .+++++++++.++.+..     ....|++|+++++|++||++++.           
T Consensus       135 ~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-----~~~~pnGia~s~dg~~lyvad~~-----------  197 (319)
T d2dg1a1         135 MVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----NISVANGIALSTDEKVLWVTETT-----------  197 (319)
T ss_dssp             EEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----EESSEEEEEECTTSSEEEEEEGG-----------
T ss_pred             eeEEe-ccceeecccccccccCcceeEEEecccceeEEEee-----ccceeeeeeeccccceEEEeccc-----------
Confidence            99999 89999997642       49999998877766543     34578999999999889999754           


Q ss_pred             eeecCCCceEEEEeCCC--CcEEE-------EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC
Q 018242          174 ILSGDKTGRLMKYDPAT--KQVTV-------LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL  244 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~--~~~~~-------~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~  244 (359)
                            .+.|++|+.+.  .....       .......|.|++++++|+ ||++...+++|.+|+.++..+   .. ..+
T Consensus       198 ------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G~~l---~~-i~~  266 (319)
T d2dg1a1         198 ------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPI---GQ-ILI  266 (319)
T ss_dssp             ------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEE---EE-EEC
T ss_pred             ------CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCCcEE---EE-EeC
Confidence                  34788876432  12111       112345689999999997 999999999999998654211   11 122


Q ss_pred             CC-------CCCceEECCCCC-EEEEEe
Q 018242          245 PG-------FPDNIKRSPRGG-FWVGIH  264 (359)
Q Consensus       245 ~~-------~p~~i~~d~~G~-lwv~~~  264 (359)
                      |.       .+.++++.++++ +|+++.
T Consensus       267 P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         267 PGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            22       345678877665 555553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=7.8e-13  Score=113.67  Aligned_cols=186  Identities=18%  Similarity=0.144  Sum_probs=135.1

Q ss_pred             EEEEeeCCCCCCceEEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           25 VVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      ..++...++..|++|++|. .++++|+....+.|.+.++++...+.+.                    ......|.++++
T Consensus        70 ~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~--------------------~~~l~~p~~l~v  129 (263)
T d1npea_          70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF--------------------DTGLVNPRGIVT  129 (263)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------------------CSSCSSEEEEEE
T ss_pred             cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe--------------------cccccCCcEEEE
Confidence            4455556678999999996 4566677777889999999876433221                    222356899999


Q ss_pred             ecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          104 NKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       104 ~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      ||..+.+|+++...   .|.+.++++...+.+..    .....|++|++|+.+++||++|.+                 .
T Consensus       130 dp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~----~~~~~P~glaiD~~~~~lYw~d~~-----------------~  188 (263)
T d1npea_         130 DPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------T  188 (263)
T ss_dssp             ETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------T
T ss_pred             ecccCcEEEeecCCCCcEEEEecCCCCCceeeee----ecccccceEEEeecCcEEEEEeCC-----------------C
Confidence            99899999997653   39999998766554432    134578999999887779999765                 4


Q ss_pred             ceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-CCCCCCceEECC
Q 018242          181 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP  255 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~  255 (359)
                      +.|.+++.++...+.+..+...|.+++++  ++.+||++...++|++++....+  ....+.. ....|.||++-.
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~--~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK--EMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE--EEEEECCSSCCCCCCEEEEC
T ss_pred             CEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc--cceEECCCCCCCcceEEEeC
Confidence            57999999876666666777789999986  45699999999999999975432  1223332 334577887644

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.9e-12  Score=108.80  Aligned_cols=228  Identities=12%  Similarity=0.061  Sum_probs=145.8

Q ss_pred             eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC-cEEEEeCCC
Q 018242           48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF-GLLKVGPEG  126 (359)
Q Consensus        48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~-~i~~~~~~~  126 (359)
                      |+.+.. ..|.+++.++.....+                     ......+.+|.+|..++.||+++... .|.+.++++
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~~~---------------------~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~   61 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYTSL---------------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEE---------------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEECC-CeEEEEECCCCcceee---------------------eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence            344444 3599999987644432                     12234577899998889999998654 488887765


Q ss_pred             CeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-EeCCCCCCce
Q 018242          127 GLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-LLGNLSFPNG  205 (359)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~p~g  205 (359)
                      ..........-......|.+|++|.-++.||+++..                 .++|.++++++..... +......|.+
T Consensus        62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~-----------------~~~I~v~~~~g~~~~~~~~~~~~~P~~  124 (266)
T d1ijqa1          62 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV-----------------LGTVSVADTKGVKRKTLFRENGSKPRA  124 (266)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSSSEEEEEECTTCCEEE
T ss_pred             CCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC-----------------CCEEEeEecCCceEEEEEcCCCCCcce
Confidence            321110000001123568899999876669999764                 3478999988655444 3455678999


Q ss_pred             EEEccCCCEEEEEecCC-CEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCC-CEEEEEecCCCccccccccCCccce
Q 018242          206 VALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRG-GFWVGIHSRRKGISKLVLSFPWIGN  282 (359)
Q Consensus       206 ia~~~d~~~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~g~  282 (359)
                      ++++|....+||++... .+|++.++++..   .+.+. ..-..|.++++|+.+ +||++....+               
T Consensus       125 l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~---------------  186 (266)
T d1ijqa1         125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH---------------  186 (266)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETTTT---------------
T ss_pred             EEEEcccCeEEEeccCCCcceeEeccCCCc---eecccccccceeeEEEeeccccEEEEecCCcC---------------
Confidence            99999888899998654 489999987642   23333 223458999999855 6998875422               


Q ss_pred             eeecCCccceeeeeecccccCcceEEEEECCCCCEEEE-EEccCCceeeceEEEEEeCCEEEEecCCCCeEEEEcCC
Q 018242          283 VLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI-LEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~g~~~~~~~~~~~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                                              .+.+++.+|..... .....+  ...+.++...++.||.+++.++.|.+++..
T Consensus       187 ------------------------~I~~~~~dG~~~~~~~~~~~~--~~~p~~lav~~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         187 ------------------------SISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             ------------------------EEEEEETTSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ------------------------EEEEEECCCCCEEEEEeCCCc--ccccEEEEEECCEEEEEECCCCeEEEEECC
Confidence                                    34555555542222 222222  234556666788899988888888887653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.47  E-value=1.3e-10  Score=100.23  Aligned_cols=214  Identities=14%  Similarity=0.171  Sum_probs=143.5

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      +.++..+  ..|.+++++|||+.+|++ ..++.|..||..+++...                    .+ .....|.++++
T Consensus        25 ~~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~--------------------~~-~~~~~~~~~~~   81 (301)
T d1l0qa2          25 TATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA--------------------TV-PAGSSPQGVAV   81 (301)
T ss_dssp             EEEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-ECSSSEEEEEE
T ss_pred             EEEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee--------------------ee-ecccccccccc
Confidence            4466666  479999999999977754 567899999998874322                    11 12245789999


Q ss_pred             ecCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCce
Q 018242          104 NKTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGR  182 (359)
Q Consensus       104 ~~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~  182 (359)
                      ++++..++++.... .+..++..+++.......     ...+..+.++++|++++++..                 ....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~dg~~~~~~~~-----------------~~~~  139 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKLYVTNN-----------------GDKT  139 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEET-----------------TTTE
T ss_pred             ccccccccccccccceeeecccccceeeeeccc-----cccceEEEeecCCCeeeeeec-----------------cccc
Confidence            99666677776554 477778887765443321     235678899999996666632                 2346


Q ss_pred             EEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEE
Q 018242          183 LMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWV  261 (359)
Q Consensus       183 v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv  261 (359)
                      +..++..+............|..++++++++.+|++......+..++....   ........+..|.+++++++|+ +|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~v  216 (301)
T d1l0qa2         140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNPEGTKAYV  216 (301)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECTTSSEEEE
T ss_pred             eeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce---eeeecccccCCcceeecccccccccc
Confidence            777888777665555555678999999999999999988888888775432   1111222345588899999986 666


Q ss_pred             EEecCCCccccccccCC-ccceeeecCCc
Q 018242          262 GIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       262 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      +..+....   .+..++ .++++...++.
T Consensus       217 ~~~~~~~~---~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         217 TNVDKYFN---TVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             EEECSSCC---EEEEEETTTTEEEEEEEC
T ss_pred             ccccceee---eeeeeecCCCeEEEEEcC
Confidence            65543211   034443 46777766654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=9.5e-12  Score=107.77  Aligned_cols=164  Identities=18%  Similarity=0.208  Sum_probs=119.8

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      ...+....+..|.+++++++|++++++...+.+.++++++.....+.                   .......|.+++++
T Consensus       105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g-------------------~~~~~~~~~~i~~d  165 (279)
T d1q7fa_         105 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG-------------------CSKHLEFPNGVVVN  165 (279)
T ss_dssp             EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEE-------------------CTTTCSSEEEEEEC
T ss_pred             eeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccc-------------------ccccccccceeeec
Confidence            33555567889999999999996667777789999999876444442                   11223458899999


Q ss_pred             cCCCeEEEEeCCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      + ++++|+++... .|.+++.++.....+..   ......|.+|++|++|+ +||+|...                ...|
T Consensus       166 ~-~g~i~v~d~~~~~V~~~d~~G~~~~~~g~---~g~~~~P~giavD~~G~-i~Vad~~~----------------~~~v  224 (279)
T d1q7fa_         166 D-KQEIFISDNRAHCVKVFNYEGQYLRQIGG---EGITNYPIGVGINSNGE-ILIADNHN----------------NFNL  224 (279)
T ss_dssp             S-SSEEEEEEGGGTEEEEEETTCCEEEEESC---TTTSCSEEEEEECTTCC-EEEEECSS----------------SCEE
T ss_pred             c-ceeEEeeeccccceeeeecCCceeeeecc---cccccCCcccccccCCe-EEEEECCC----------------CcEE
Confidence            8 89999998754 58899998766554432   12345789999999999 99997541                2358


Q ss_pred             EEEeCCCCcEE-EEeC--CCCCCceEEEccCCCEEEEEecCCCEEEEEEcC
Q 018242          184 MKYDPATKQVT-VLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLK  231 (359)
Q Consensus       184 ~~~d~~~~~~~-~~~~--~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~  231 (359)
                      .+++++ +++. .+..  ....|.++|+++||+ +||++ .+++|.+|...
T Consensus       225 ~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~-l~V~~-~n~~v~~fr~~  272 (279)
T d1q7fa_         225 TIFTQD-GQLISALESKVKHAQCFDVALMDDGS-VVLAS-KDYRLYIYRYV  272 (279)
T ss_dssp             EEECTT-SCEEEEEEESSCCSCEEEEEEETTTE-EEEEE-TTTEEEEEECS
T ss_pred             EEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCc-EEEEe-CCCeEEEEEee
Confidence            888887 5543 3332  245689999999985 89987 57899988753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.42  E-value=7.5e-11  Score=106.11  Aligned_cols=199  Identities=15%  Similarity=0.148  Sum_probs=116.8

Q ss_pred             eeCCCCCCceEEEccCCCeeEEecCCCEEEEE--EcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKW--HQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        29 ~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      .++....|..|+++++|+.+|+... +.+..|  +.+++ .....                   .......|.+++++++
T Consensus        35 ~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~-~~~~~-------------------~~~~~~~p~~v~~~~~   93 (365)
T d1jofa_          35 EIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTE-IVHEA-------------------SHPIGGHPRANDADTN   93 (365)
T ss_dssp             ECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTE-EEEEE-------------------EEECCSSGGGGCTTSC
T ss_pred             eccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCC-eEEEe-------------------eecCCCCcEEEEECCC
Confidence            4454556788999999998998766 445544  45443 22211                   1122345667777774


Q ss_pred             CCeEEEEeCC--C-cEEEE--eCCCCeEEEE-----------eecCCCccccccceEEEeCCCCEEEEEeCCCccccccc
Q 018242          107 NGDLYIADAY--F-GLLKV--GPEGGLATAV-----------ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH  170 (359)
Q Consensus       107 ~g~l~v~~~~--~-~i~~~--~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~  170 (359)
                      +..+|+....  . .+..+  ...++.....           ......+....+++++++|+|+++|+++.+.+      
T Consensus        94 ~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d------  167 (365)
T d1jofa_          94 TRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN------  167 (365)
T ss_dssp             CEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT------
T ss_pred             CCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCC------
Confidence            5556665432  1 23322  2222211111           10001112346789999999999999976532      


Q ss_pred             eeeeeecCCCceEEEE--eCCCCcEEEE-----eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec
Q 018242          171 ISVILSGDKTGRLMKY--DPATKQVTVL-----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ  243 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~--d~~~~~~~~~-----~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  243 (359)
                                 .|+++  +.+ +.....     ......|.+++++||++.+|+++..+++|.+|+.+..+.........
T Consensus       168 -----------~v~~~~~~~~-g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~  235 (365)
T d1jofa_         168 -----------KLWTHRKLAS-GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             -----------EEEEEEECTT-SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             -----------EEEEEEccCC-CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeee
Confidence                       45554  433 333322     12346799999999999999999999999999987654322211111


Q ss_pred             ---CC--------------CCCCceEECCCCC-EEEEEecC
Q 018242          244 ---LP--------------GFPDNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       244 ---~~--------------~~p~~i~~d~~G~-lwv~~~~~  266 (359)
                         .+              ..+..+.++++|+ ||++..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             eccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence               10              0134588999997 77776643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.5e-10  Score=99.88  Aligned_cols=201  Identities=13%  Similarity=0.210  Sum_probs=122.3

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      ++..+  ..|.+|+++|||+.||++.. ++.|..|+.+..... .+.                  ........|.+++++
T Consensus        32 ~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~------------------~~~~~~~~p~~l~~s   91 (333)
T d1ri6a_          32 VVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------------------AESALPGSLTHISTD   91 (333)
T ss_dssp             EEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE------------------EEEECSSCCSEEEEC
T ss_pred             EEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe------------------eecccCCCceEEEEc
Confidence            44455  47899999999998887665 688988887643211 110                  112233568899999


Q ss_pred             cCCCeEEEEeCCCc-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          105 KTNGDLYIADAYFG-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       105 ~~~g~l~v~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      +++..||+++...+ +..++.+............  ....++++.++++++++++++..                 ...+
T Consensus        92 pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i  152 (333)
T d1ri6a_          92 HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALK-----------------QDRI  152 (333)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGG-----------------GTEE
T ss_pred             CCCCEEeecccCCCceeeeccccccceecccccC--CCccceEEEeeecceeeeccccc-----------------ccee
Confidence            96667888876543 5566655554333222111  22357789999999977777432                 2245


Q ss_pred             EEEeCCCCc-EEE------EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCc--ceeEeecCC------CCC
Q 018242          184 MKYDPATKQ-VTV------LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG--TIEIVAQLP------GFP  248 (359)
Q Consensus       184 ~~~d~~~~~-~~~------~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~------~~p  248 (359)
                      ..++..+.. ...      .......|..++++++++.+|++....+....++.......  ........+      ..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence            544443221 111      11234567899999999999999988888888876543211  111121111      224


Q ss_pred             CceEECCCCC-EEEEEecC
Q 018242          249 DNIKRSPRGG-FWVGIHSR  266 (359)
Q Consensus       249 ~~i~~d~~G~-lwv~~~~~  266 (359)
                      ..++++++|+ +|++....
T Consensus       233 ~~~~~s~d~~~~~~~~~~~  251 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTA  251 (333)
T ss_dssp             EEEEECTTSSEEEEEETTT
T ss_pred             eeEEEecccCceeeecccC
Confidence            4578889987 55555443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.39  E-value=2.9e-11  Score=105.55  Aligned_cols=189  Identities=15%  Similarity=0.100  Sum_probs=127.5

Q ss_pred             EEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        27 ~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      .+..+  ..|.++++.++|+ +|++.. .+|+++|+.+++++.+....                .......+..+.+++ 
T Consensus        54 ~~~~~--~~~~~i~~~~dg~-l~va~~-~gl~~~d~~tg~~~~l~~~~----------------~~~~~~~~nd~~vd~-  112 (295)
T d2ghsa1          54 VHALP--FMGSALAKISDSK-QLIASD-DGLFLRDTATGVLTLHAELE----------------SDLPGNRSNDGRMHP-  112 (295)
T ss_dssp             EEECS--SCEEEEEEEETTE-EEEEET-TEEEEEETTTCCEEEEECSS----------------TTCTTEEEEEEEECT-
T ss_pred             EEECC--CCcEEEEEecCCC-EEEEEe-CccEEeecccceeeEEeeee----------------cCCCcccceeeEECC-
Confidence            34444  3678999999998 777766 57999999998877764221                011223577889999 


Q ss_pred             CCeEEEEeCCC-------cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCC
Q 018242          107 NGDLYIADAYF-------GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       107 ~g~l~v~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      +|++|+++...       .+++++  .++++.+..     ....+|+++++++++++|++|+.                 
T Consensus       113 ~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~-----~~~~~Ng~~~s~d~~~l~~~dt~-----------------  168 (295)
T d2ghsa1         113 SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-----DISIPNSICFSPDGTTGYFVDTK-----------------  168 (295)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-----EESSEEEEEECTTSCEEEEEETT-----------------
T ss_pred             CCCEEEEeccccccccceeEeeec--CCcEEEEee-----ccCCcceeeecCCCceEEEeecc-----------------
Confidence            99999997421       255554  456655443     34578999999999989999764                 


Q ss_pred             CceEEEEeCCC--C----cEEEEe---CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCC-CCCC
Q 018242          180 TGRLMKYDPAT--K----QVTVLL---GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPD  249 (359)
Q Consensus       180 ~g~v~~~d~~~--~----~~~~~~---~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~  249 (359)
                      .+.|++++.+.  +    +...+.   .....|.|++++.+|+ +|++....++|.+|+.++.    ......+| ..|.
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~----~~~~i~lP~~~~T  243 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN----HIARYEVPGKQTT  243 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC----EEEEEECSCSBEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCc----EeeEecCCCCceE
Confidence            44687776432  1    111111   2234589999999997 8999988899999986543    12222333 3577


Q ss_pred             ceEEC-CCC-CEEEEEec
Q 018242          250 NIKRS-PRG-GFWVGIHS  265 (359)
Q Consensus       250 ~i~~d-~~G-~lwv~~~~  265 (359)
                      ++++. +++ .|||++-.
T Consensus       244 ~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         244 CPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEESTTSCEEEEEEBC
T ss_pred             EEEEeCCCCCEEEEEECC
Confidence            88885 454 49998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=4.3e-10  Score=98.21  Aligned_cols=104  Identities=17%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             ccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC
Q 018242          143 FCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS  222 (359)
Q Consensus       143 ~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~  222 (359)
                      ++.++++++||+ ||+++..                 .+.|+++++++ +.+.+......|+++++++||+ +|+++...
T Consensus        29 ~~e~iAv~pdG~-l~vt~~~-----------------~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAPDGT-IFVTNHE-----------------VGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CEEEEEECTTSC-EEEEETT-----------------TTEEEEECTTC-CEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CcCCEEECCCCC-EEEEeCC-----------------CCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            577899999999 9999754                 45899999984 5555555556799999999998 89999888


Q ss_pred             CEEEEEEcCCCCCcceeEeec--CCCCCCceEECCCCCEEEEEecCC
Q 018242          223 CRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       223 ~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      +.+.+++..... .....+..  ....|++++++++|++|++.....
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~  134 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRG  134 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTT
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeeccccc
Confidence            889888875432 22333333  234578899999999999886543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6e-08  Score=85.11  Aligned_cols=187  Identities=8%  Similarity=-0.028  Sum_probs=119.3

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .++++.|+|+.++++..++.|..||......+...                  .+.........+.++++...++.+...
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d  162 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA------------------ELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE------------------EEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEcCCCCEEEEeeccccccccccccccccccc------------------ccccccccccccccccccccccccccc
Confidence            47899999998888889999999998754322211                  112222334567888844444445555


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      ..+..++..+++.......    ....+..++++++++.++++                  ...+.+..+|..+++....
T Consensus       163 ~~i~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~~~~~------------------~~d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         163 GNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWTG------------------GLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             SCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEE------------------ETTSEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccc----cccccccccccccccccccc------------------cccccccccccccceeecc
Confidence            5688999988875433221    12346678999999955555                  2346788899877665443


Q ss_pred             eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          197 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       197 ~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      .........++++|+++.++ +...++.+..|++.....  . ...........++++++|++.++....+
T Consensus       221 ~~~~~~i~~l~~~~~~~~l~-~~~~d~~i~i~d~~~~~~--~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         221 HDFTSQIFSLGYCPTGEWLA-VGMESSNVEVLHVNKPDK--Y-QLHLHESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEE-EEETTSCEEEEETTSSCE--E-EECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccceEEEEEcccccccc-eecccccccccccccccc--c-cccccccccceEEECCCCCEEEEEeCCC
Confidence            33334567899999998655 455678899999764321  1 1111223346688999998777655433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=4e-10  Score=103.57  Aligned_cols=191  Identities=9%  Similarity=-0.110  Sum_probs=121.8

Q ss_pred             CCceEEEccC-CCeeE-EecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           35 GPESLAFDAL-GEGPY-TGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        35 ~p~~i~~~~~-G~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      .|.....+.+ .++++ +...++.|..||..+++...                    .+. ....|++++|+|++..+|+
T Consensus        20 ~~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~--------------------~~~-~g~~~~~v~fSpDG~~l~~   78 (432)
T d1qksa2          20 RPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKT--------------------VLD-TGYAVHISRLSASGRYLFV   78 (432)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEE--------------------EEE-CSSCEEEEEECTTSCEEEE
T ss_pred             CCCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEE--------------------EEe-CCCCeeEEEECCCCCEEEE
Confidence            4444444444 23343 44566899999999885443                    121 2245899999997777888


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEE----EeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          113 ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLD----IDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       113 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      ++..+.+..+|.++++.+.......   ...+.+++    ++|||++||++..                 ..+.|..+|.
T Consensus        79 ~s~dg~v~~~d~~t~~~~~~~~i~~---~~~~~~~~~s~~~SpDG~~l~vs~~-----------------~~~~v~i~d~  138 (432)
T d1qksa2          79 IGRDGKVNMIDLWMKEPTTVAEIKI---GSEARSIETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDG  138 (432)
T ss_dssp             EETTSEEEEEETTSSSCCEEEEEEC---CSEEEEEEECCSTTCTTTEEEEEEE-----------------ETTEEEEEET
T ss_pred             EcCCCCEEEEEeeCCCceEEEEEec---CCCCCCeEEecccCCCCCEEEEEcC-----------------CCCeEEEEeC
Confidence            8766678899988765332221111   11233444    4579998888732                 2457888998


Q ss_pred             CCCcEEEEeCC------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCC
Q 018242          189 ATKQVTVLLGN------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR  256 (359)
Q Consensus       189 ~~~~~~~~~~~------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  256 (359)
                      .+++.......            ...+.++++++|++.++++....+.+..++....+...... ......|.+++++++
T Consensus       139 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~-i~~g~~~~~~~~spd  217 (432)
T d1qksa2         139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGS  217 (432)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTT
T ss_pred             ccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEE-EcccCccccceECCC
Confidence            88776543211            11234678899999999999999999999976543221111 123456889999999


Q ss_pred             CC-EEEEEecCC
Q 018242          257 GG-FWVGIHSRR  267 (359)
Q Consensus       257 G~-lwv~~~~~~  267 (359)
                      |+ ++++.....
T Consensus       218 g~~~~va~~~~~  229 (432)
T d1qksa2         218 HRYFITAANARN  229 (432)
T ss_dssp             SCEEEEEEGGGT
T ss_pred             CCEEEEeccccc
Confidence            98 555655544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.15  E-value=5.1e-08  Score=84.95  Aligned_cols=275  Identities=8%  Similarity=-0.064  Sum_probs=148.2

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-E
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-A  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~  113 (359)
                      .|..++.+|+|+.++.+. ++.++.|+.++.+....                    +.........++++| +|++++ +
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~--------------------~~~H~~~v~~~~~sp-~g~~latg   76 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI--------------------YTEHSHQTTVAKTSP-SGYYCASG   76 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEE--------------------ECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEE--------------------EcCCCCCEEEEEEeC-CCCeEecc
Confidence            566899999999666654 56799999876532221                    122234467899999 565554 4


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..++..++....... ... ....+..++++++|+ ++++...               .....+..++.++++.
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~v~~v~~s~d~~-~l~~~~~---------------~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTT-IPV-FSGPVKDISWDSESK-RIAAVGE---------------GRERFGHVFLFDTGTS  138 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEE-EEC-SSSCEEEEEECTTSC-EEEEEEC---------------CSSCSEEEEETTTCCB
T ss_pred             ccCceEeeeeeeccccccccc-ccc-ccCcccccccccccc-ccccccc---------------cccccccccccccccc
Confidence            555568888887654211111 010 113567899999999 4444211               1122234445444433


Q ss_pred             E-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCCCcccc
Q 018242          194 T-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISK  272 (359)
Q Consensus       194 ~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~  272 (359)
                      . .+.........++|+|+++.++++...++.|..|++...+.  ...+.........++++++|++.++....+.    
T Consensus       139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~--~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~----  212 (311)
T d1nr0a1         139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGT----  212 (311)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSC----
T ss_pred             cccccccccccccccccccceeeeccccccccccccccccccc--ccccccccccccccccCcccccccccccccc----
Confidence            2 22222344578999999987788888889999999754311  1111112233456899999987776554443    


Q ss_pred             ccccCC-ccceeeecCCcc-------ceeeeeecccccCc-------ceEEEEEC-CCCCEEEEEEccCCceeeceEEEE
Q 018242          273 LVLSFP-WIGNVLIKLPID-------IVKIHSSLVKLSGN-------GGMAMRIS-EQGNVLEILEEIGRKMWRSISEVE  336 (359)
Q Consensus       273 ~~~~~~-~~g~~~~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~-~~g~~~~~~~~~~g~~~~~~~~~~  336 (359)
                       +..++ ..++....+...       ...+.++.+.....       .+.+..+| .+++.+..+...... ......+.
T Consensus       213 -v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~  290 (311)
T d1nr0a1         213 -IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGII  290 (311)
T ss_dssp             -EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEE
T ss_pred             -ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEE
Confidence             34443 233333322211       12233333332221       01222333 223334444322111 12223444


Q ss_pred             EeCCEEEEecCCCCeEEEEcCC
Q 018242          337 EKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       337 ~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                      ..+..|+.++. +..|.+.+++
T Consensus       291 ~~~~~l~s~s~-dG~i~~wd~d  311 (311)
T d1nr0a1         291 WTKQALVSISA-NGFINFVNPE  311 (311)
T ss_dssp             ECSSCEEEEET-TCCEEEEETT
T ss_pred             ecCCEEEEEEC-CCEEEEEeCC
Confidence            55677887875 6778888764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=4.9e-08  Score=84.78  Aligned_cols=202  Identities=7%  Similarity=0.016  Sum_probs=121.5

Q ss_pred             CCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           32 GAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        32 ~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ....|.+++++|||+.+|++.. ++.+..++..........                  ........++++.+++++..+
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------------------DVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE------------------EEECCCTTBCCCEECTTSSEE
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc------------------cccCCCccceEEEeeecceee
Confidence            3468999999999998888764 567777776554322211                  112233457889999966667


Q ss_pred             EEEeCCC-cEEEEeCCCCeEE--EEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEe
Q 018242          111 YIADAYF-GLLKVGPEGGLAT--AVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYD  187 (359)
Q Consensus       111 ~v~~~~~-~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  187 (359)
                      ++++... .+..++.......  .............|..+++++++..+|++.....               ...++.++
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~---------------~~~v~~~~  207 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS---------------SVDVWELK  207 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT---------------EEEEEESS
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC---------------ceEEEeec
Confidence            7776543 4666665443211  1111111122346778999999996777643211               12344444


Q ss_pred             CCCCcEEE---Ee------CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCc-ceeEeecCCCCCCceEECCCC
Q 018242          188 PATKQVTV---LL------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-TIEIVAQLPGFPDNIKRSPRG  257 (359)
Q Consensus       188 ~~~~~~~~---~~------~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G  257 (359)
                      ........   +.      .....+.++++++|++++|++....+.+..|+++..... ...........|.++++++||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG  287 (333)
T d1ri6a_         208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG  287 (333)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred             ccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC
Confidence            43332221   11      112346788999999999999999999999987654221 111122234569999999999


Q ss_pred             C-EEEEEecC
Q 018242          258 G-FWVGIHSR  266 (359)
Q Consensus       258 ~-lwv~~~~~  266 (359)
                      + ||++....
T Consensus       288 k~l~va~~~~  297 (333)
T d1ri6a_         288 KYLIAAGQKS  297 (333)
T ss_dssp             SEEEEECTTT
T ss_pred             CEEEEEECCC
Confidence            8 66665443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.13  E-value=1.4e-08  Score=93.11  Aligned_cols=174  Identities=9%  Similarity=-0.004  Sum_probs=117.7

Q ss_pred             CCCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEE
Q 018242           22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGL  101 (359)
Q Consensus        22 ~~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi  101 (359)
                      .+...++..+  ..|++++++|||+++|++..++.+..||..+++.....                  .+ .....+.++
T Consensus        52 ~~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~------------------~i-~~~~~~~~~  110 (432)
T d1qksa2          52 YEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA------------------EI-KIGSEARSI  110 (432)
T ss_dssp             CCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE------------------EE-ECCSEEEEE
T ss_pred             CcEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE------------------EE-ecCCCCCCe
Confidence            3444566666  47999999999999999888999999998876422211                  11 122346666


Q ss_pred             EEe----cCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecC----CC---ccccccceEEEeCCCCEEEEEeCCCcccccc
Q 018242          102 CFN----KTNGDLYIADAY-FGLLKVGPEGGLATAVATQS----EG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRN  169 (359)
Q Consensus       102 ~~~----~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~----~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~  169 (359)
                      +++    +++..|+++... +.+..+|.++++........    ..   .+......++.+++|.+++++..        
T Consensus       111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~--------  182 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--------  182 (432)
T ss_dssp             EECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--------
T ss_pred             EEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc--------
Confidence            654    544557777543 45888999988765433210    00   12234456788999986666632        


Q ss_pred             ceeeeeecCCCceEEEEeCCCCcEEEE--eCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          170 HISVILSGDKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       170 ~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                               ..+.|..++..+.+...+  ......|.+++++|||+++|++....+.+..++.+..
T Consensus       183 ---------~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         183 ---------ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             ---------TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ---------cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence                     246788888776543322  2344678999999999999999999999999987543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.11  E-value=4.8e-08  Score=84.73  Aligned_cols=130  Identities=14%  Similarity=0.026  Sum_probs=84.0

Q ss_pred             EEeeCC-CCCCceEEEccCCCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           27 QYQIEG-AIGPESLAFDALGEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        27 ~~~~~~-~~~p~~i~~~~~G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      .+..+. ...|.+++++|||+.+|++ ..++.|..||..+++........               ........+.+++++
T Consensus        26 ~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~---------------~~~~~~~~~~~v~~s   90 (337)
T d1pbyb_          26 VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---------------TPEERVKSLFGAALS   90 (337)
T ss_dssp             EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC---------------BTTEEEECTTCEEEC
T ss_pred             EEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC---------------CCcccccceeeEEEc
Confidence            455543 4679999999999977764 56789999999987644321110               001112346689999


Q ss_pred             cCCCeEEEEeCC------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccccccee
Q 018242          105 KTNGDLYIADAY------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHIS  172 (359)
Q Consensus       105 ~~~g~l~v~~~~------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~  172 (359)
                      ++++.++++...            ..+..+|..+++.......     ...+++++++++|+++|++.            
T Consensus        91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~------------  153 (337)
T d1pbyb_          91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLG------------  153 (337)
T ss_dssp             TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEES------------
T ss_pred             CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----cCCceEEEEcCCCCEEEEEc------------
Confidence            977777777531            2356677777765433221     23577899999999787772            


Q ss_pred             eeeecCCCceEEEEeCCCCcEEEE
Q 018242          173 VILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       173 ~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                              +.+..+|..+++....
T Consensus       154 --------~~~~~~d~~~~~~~~~  169 (337)
T d1pbyb_         154 --------RDLHVMDPEAGTLVED  169 (337)
T ss_dssp             --------SSEEEEETTTTEEEEE
T ss_pred             --------CCcceeeeecCcEEEE
Confidence                    2356678777665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.10  E-value=4e-08  Score=84.33  Aligned_cols=199  Identities=16%  Similarity=0.146  Sum_probs=120.1

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEe
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFN  104 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~  104 (359)
                      +.++..+=...-.+++++|+|++++++..++.|..||..+++....                   ...........++++
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~h~~~v~~v~~~   64 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-------------------FPDVHATMITGIKTT   64 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC-------------------SSCSCSSCEEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-------------------EcCCCCCcEEEEEee
Confidence            3344445344556899999999888889999999999987643221                   001122335688999


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          105 KTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       105 ~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      + +++++++...+.+..++........... ........+..+++.++|+ +.++..                  .+.+.
T Consensus        65 ~-~g~~~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~-~~~~~~------------------~~~i~  123 (299)
T d1nr0a2          65 S-KGDLFTVSWDDHLKVVPAGGSGVDSSKA-VANKLSSQPLGLAVSADGD-IAVAAC------------------YKHIA  123 (299)
T ss_dssp             T-TSCEEEEETTTEEEEECSSSSSSCTTSC-CEEECSSCEEEEEECTTSS-CEEEEE------------------SSEEE
T ss_pred             c-cceeecccceeeEEEeccCCcccccccc-ccccccccccccccccccc-cccccc------------------ccccc
Confidence            8 7888888766678788765433211000 0000123456788999998 555421                  23567


Q ss_pred             EEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEe
Q 018242          185 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      .++..  +...... ......++++|+++.++ +...++.|..|++........... ..+.....++++++|++.++..
T Consensus       124 ~~~~~--~~~~~~~-~~~~~~~~~s~~~~~l~-~g~~dg~i~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~  198 (299)
T d1nr0a2         124 IYSHG--KLTEVPI-SYNSSCVALSNDKQFVA-VGGQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATD  198 (299)
T ss_dssp             EEETT--EEEEEEC-SSCEEEEEECTTSCEEE-EEETTSEEEEEEEETTEEEEEEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccc--ccccccc-ccccccccccccccccc-cccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence            77653  3332222 23356789999998554 455678999999865422211111 1223346688999998766555


Q ss_pred             cCCC
Q 018242          265 SRRK  268 (359)
Q Consensus       265 ~~~~  268 (359)
                      ..+.
T Consensus       199 ~d~~  202 (299)
T d1nr0a2         199 QSRK  202 (299)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            5443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=1.4e-07  Score=83.95  Aligned_cols=221  Identities=7%  Similarity=0.001  Sum_probs=127.8

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+++++|+|+++.++..++.|..||..++++....                  .+.........++++|++..|..+...
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~------------------~l~gH~~~V~~l~fsp~~~~l~s~s~D   72 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH------------------ELKEHNGQVTGVDWAPDSNRIVTCGTD   72 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE------------------EEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE------------------EecCCCCCEEEEEECCCCCEEEEEECC
Confidence            69999999997888888899999999877554432                  222233446789999944444445544


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE-
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV-  195 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-  195 (359)
                      +.|..++.+++..+.......  ....+..+.++|++++++++..                ...-.++.++........ 
T Consensus        73 ~~i~vWd~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~l~~~s~----------------d~~i~i~~~~~~~~~~~~~  134 (371)
T d1k8kc_          73 RNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSG----------------SRVISICYFEQENDWWVCK  134 (371)
T ss_dssp             SCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEET----------------TSSEEEEEEETTTTEEEEE
T ss_pred             CeEEEEeeccccccccccccc--ccccccccccccccccceeecc----------------cCcceeeeeeccccccccc
Confidence            458888888776544322111  1235678999999995555521                122345556654332221 


Q ss_pred             -EeC-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcce-------------eEeec---CCCCCCceEECCCC
Q 018242          196 -LLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI-------------EIVAQ---LPGFPDNIKRSPRG  257 (359)
Q Consensus       196 -~~~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~-------------~~~~~---~~~~p~~i~~d~~G  257 (359)
                       ... .......++++|+++. +++...++.+..|+.........             +....   ..+....++++++|
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~-l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  213 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVL-LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG  213 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSE-EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred             ccccccccccccccccccccc-eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc
Confidence             111 1223467899999985 56666778999998753221110             11111   11223457899999


Q ss_pred             CEEEEEecCCCccccccccCC-ccceeeecCCccceeeeeecc
Q 018242          258 GFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLV  299 (359)
Q Consensus       258 ~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~  299 (359)
                      +..++....+.     +..++ ..++.+..+......+.++.+
T Consensus       214 ~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~v~s~~f  251 (371)
T d1k8kc_         214 SRVAWVSHDST-----VCLADADKKMAVATLASETLPLLAVTF  251 (371)
T ss_dssp             SEEEEEETTTE-----EEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred             ccccccccCCc-----ceEEeeecccceeeeecccccceeeee
Confidence            86654444333     44443 244555544433333444443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.08  E-value=1.1e-08  Score=91.45  Aligned_cols=172  Identities=10%  Similarity=0.090  Sum_probs=106.9

Q ss_pred             CCCCceEEEccCCCeeEEec-CCCEEEEEEcCCc-ceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           33 AIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQR-RWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        33 ~~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ..+|+++.++|||+.+|+.. ....|+.++.+.. ........                ........|+++++++++..+
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~----------------~~~~~g~gPr~i~f~pdg~~~  207 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV----------------DAPDPGDHPRWVAMHPTGNYL  207 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE----------------ECSSTTCCEEEEEECTTSSEE
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce----------------eecCCCCceEEEEECCCCceE
Confidence            34688999999999777654 4468888865432 22221100                112234569999999966678


Q ss_pred             EEEeCCC-cEEEEeCCCCeEE---EEe--ecCC----------CccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242          111 YIADAYF-GLLKVGPEGGLAT---AVA--TQSE----------GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus       111 ~v~~~~~-~i~~~~~~~~~~~---~~~--~~~~----------~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      |++.... .|..++.++++..   ...  ....          ......+..+.++|+|++||+++.+.+.         
T Consensus       208 yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~---------  278 (365)
T d1jofa_         208 YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF---------  278 (365)
T ss_dssp             EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST---------
T ss_pred             EEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC---------
Confidence            8887544 4767666544321   111  0000          0122346689999999999999654221         


Q ss_pred             eecCCCc--eEEEEeCCCCcEEE---E---eCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCC
Q 018242          175 LSGDKTG--RLMKYDPATKQVTV---L---LGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       175 ~~~~~~g--~v~~~d~~~~~~~~---~---~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                         ...+  ..++++.. +.+..   +   ......|++++++| +|++||+++..++.|.+|++++.
T Consensus       279 ---~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         279 ---ELQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ---TSCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ---ccceEEEEEEecCC-CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence               1112  23445544 23321   1   12356799999997 89999999999999999988654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.07  E-value=5e-08  Score=88.80  Aligned_cols=219  Identities=8%  Similarity=-0.098  Sum_probs=132.8

Q ss_pred             EeeCCCCCCceEEEccCCC-eeEE-ecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           28 YQIEGAIGPESLAFDALGE-GPYT-GVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        28 ~~~~~~~~p~~i~~~~~G~-~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      +..+....|..+.++.|.+ ++++ ...++.|..||..+++...                    .+. ....|++++|+|
T Consensus        13 ~~~~~~~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~--------------------~l~-~g~~~~~vafSP   71 (426)
T d1hzua2          13 VLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVK--------------------VID-TGYAVHISRMSA   71 (426)
T ss_dssp             ESSCGGGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEE--------------------EEE-CCSSEEEEEECT
T ss_pred             eeCCcccCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEE--------------------EEe-CCCCeeEEEECC
Confidence            3345556777777776633 3444 5567999999999875432                    111 224589999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCeEEEEeecCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          106 TNGDLYIADAYFGLLKVGPEGGLATAVATQSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       106 ~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      ++..+|++...+.+..+|.++++......... ..+...+..++++|||++++++...                 .+.+.
T Consensus        72 DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~-----------------~~~v~  134 (426)
T d1hzua2          72 SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFA  134 (426)
T ss_dssp             TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEE
T ss_pred             CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC-----------------CCeEE
Confidence            66677887766668999998886543322111 1111223334455799978887321                 34677


Q ss_pred             EEeCCCCcEEEEeCC------------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceE
Q 018242          185 KYDPATKQVTVLLGN------------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIK  252 (359)
Q Consensus       185 ~~d~~~~~~~~~~~~------------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~  252 (359)
                      .+|.+++........            ...+..++.++|+..++++....+.+..++.......... .......|.++.
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~  213 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT-SIGAAPFLADGG  213 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE-EEECCSSEEEEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE-EeccCCccEeee
Confidence            788887765543211            1112456778888888999888888888876543222211 222344578899


Q ss_pred             ECCCCCEEEEEecCCCccccccccCCccceeeecCC
Q 018242          253 RSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLP  288 (359)
Q Consensus       253 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~g~~~~~~~  288 (359)
                      ++++|+++.........   ........++....++
T Consensus       214 ~~~~g~~~~~a~~~~~~---~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         214 WDSSHRYFMTAANNSNK---VAVIDSKDRRLSALVD  246 (426)
T ss_dssp             ECTTSCEEEEEETTCSE---EEEEETTTTEEEEEEE
T ss_pred             ECCCCcEEEeeeecccc---eeeeecccccEEEEec
Confidence            99999866655443321   1222344566655543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.06  E-value=1.6e-07  Score=85.32  Aligned_cols=173  Identities=10%  Similarity=-0.017  Sum_probs=111.6

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEE
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLC  102 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~  102 (359)
                      +.+-++..+  ..|++++++|||+++|++..++.+..||.++++.....                  .+ .....+.+++
T Consensus        53 ~~~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~------------------~i-~~~~~~~~~~  111 (426)
T d1hzua2          53 KIVKVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA------------------EI-KIGIEARSVE  111 (426)
T ss_dssp             SEEEEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE------------------EE-ECCSEEEEEE
T ss_pred             cEEEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE------------------EE-eCCCCCcceE
Confidence            334466665  47999999999999999988899999999887433221                  11 1223455665


Q ss_pred             Ee----cCCCeEEEEeCC-CcEEEEeCCCCeEEEEeecC----CC---ccccccceEEEeCCCCEEEEEeCCCccccccc
Q 018242          103 FN----KTNGDLYIADAY-FGLLKVGPEGGLATAVATQS----EG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNH  170 (359)
Q Consensus       103 ~~----~~~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~----~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~  170 (359)
                      ++    +++..++++... +.+..+|.+++.........    ..   ........++.++++..+|++...        
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~--------  183 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE--------  183 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT--------
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC--------
Confidence            54    545567777543 45777888887754433211    00   011233456777888866666432        


Q ss_pred             eeeeeecCCCceEEEEeCCCCc--EEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          171 ISVILSGDKTGRLMKYDPATKQ--VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                               .+.+..++.....  ..........|.++++++++++++++....+.+..++....
T Consensus       184 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         184 ---------TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             ---------TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             ---------CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence                     3455555544332  11223445678999999999999999999999999987654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.05  E-value=4.3e-08  Score=90.01  Aligned_cols=181  Identities=13%  Similarity=0.135  Sum_probs=103.9

Q ss_pred             EEEEeeCCCCCCceEEEccCCCeeEEecC-CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEE
Q 018242           25 VVQYQIEGAIGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCF  103 (359)
Q Consensus        25 ~~~~~~~~~~~p~~i~~~~~G~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~  103 (359)
                      ++++ +.++..|++|++.|||+ ++++.. .|+|+++++++++.+.+...+...            ......+...+|++
T Consensus        19 ~~~i-a~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~------------~~~~ge~GLLgia~   84 (450)
T d1crua_          19 KKVI-LSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIV------------NDADGQNGLLGFAF   84 (450)
T ss_dssp             EEEE-ECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCC------------CCTTSSCSEEEEEE
T ss_pred             EEEE-ECCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccc------------cccCCCCceeeEEe
Confidence            4444 45599999999999999 666664 689999998887666654322110            11122234578999


Q ss_pred             ecC---CCeEEEEeCC-----------C--cEEEEeCCC--CeE---EEEeecCCCccccccceEEEeCCCCEEEEEeCC
Q 018242          104 NKT---NGDLYIADAY-----------F--GLLKVGPEG--GLA---TAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSS  162 (359)
Q Consensus       104 ~~~---~g~l~v~~~~-----------~--~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~  162 (359)
                      +|+   ++.+|++...           +  .+.++..+.  ...   +.+....+....+.-..|++++||. ||++.-.
T Consensus        85 ~Pdf~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd  163 (450)
T d1crua_          85 HPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD  163 (450)
T ss_dssp             CTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred             CCCCccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecC
Confidence            873   5888886320           0  133433322  221   1122212222334567899999999 9998432


Q ss_pred             Cccc--cc-------cce------eeeeecCCCceEEEEeCCCCcE-----------EEEeCCCCCCceEEEccCCCEEE
Q 018242          163 SQFQ--RR-------NHI------SVILSGDKTGRLMKYDPATKQV-----------TVLLGNLSFPNGVALSEDGNYIL  216 (359)
Q Consensus       163 ~~~~--~~-------~~~------~~~~~~~~~g~v~~~d~~~~~~-----------~~~~~~~~~p~gia~~~d~~~l~  216 (359)
                      ....  ..       ...      .........|+|+++++++...           +.+..+...|.+++++++++ ||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~  242 (450)
T d1crua_         164 QGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LL  242 (450)
T ss_dssp             TTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EE
T ss_pred             CCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-ee
Confidence            1100  00       000      0000112347888888764321           23556677788899988766 78


Q ss_pred             EEecC
Q 018242          217 LAETT  221 (359)
Q Consensus       217 v~~~~  221 (359)
                      +++..
T Consensus       243 ~~e~G  247 (450)
T d1crua_         243 QSEQG  247 (450)
T ss_dssp             EEEEC
T ss_pred             ecccc
Confidence            87764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.04  E-value=4.9e-08  Score=85.00  Aligned_cols=104  Identities=14%  Similarity=-0.020  Sum_probs=74.9

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      |++++++|++++++..++.|..||.++++.....                  .+ +....|.+++++|++..+|++...+
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~------------------~~-~~~~~p~~l~~spDG~~l~v~~~~~   61 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC------------------VM-PDKFGPGTAMMAPDNRTAYVLNNHY   61 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE------------------EC-SSCCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE------------------Ec-CCCCCcceEEECCCCCEEEEEECCC
Confidence            4678899998888999999999999988543211                  11 2234588999999666788887654


Q ss_pred             -cEEEEeCCCCeEEEEeecCC--CccccccceEEEeCCCCEEEEEe
Q 018242          118 -GLLKVGPEGGLATAVATQSE--GIPFRFCNSLDIDQSTGIIYFTD  160 (359)
Q Consensus       118 -~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~d~~g~~l~v~d  160 (359)
                       .|..+|.++++.........  ......|.++++++||+++|++.
T Consensus        62 ~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             TEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence             59999999987654322111  11234678999999999899885

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.04  E-value=6.6e-08  Score=84.18  Aligned_cols=208  Identities=13%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++|+|+++.++..++.|..||..+.+.....                  .+.........+++++++..+.++.
T Consensus        60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT------------------TIPVFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE------------------EEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CEEEEEEeCCCCeEeccccCceEeeeeeecccccccc------------------ccccccCcccccccccccccccccc
Confidence            4468889999998888999999999998775321110                  1222233467899999444454444


Q ss_pred             CC-C-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          115 AY-F-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       115 ~~-~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      .. . .+..++.++++....   ... ....+..++++|+|++++++-                 ...+.|..+|.++++
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~---l~~-h~~~v~~v~~~~~~~~~l~sg-----------------s~d~~i~i~d~~~~~  180 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSNGN---LTG-QARAMNSVDFKPSRPFRIISG-----------------SDDNTVAIFEGPPFK  180 (311)
T ss_dssp             CCSSCSEEEEETTTCCBCBC---CCC-CSSCEEEEEECSSSSCEEEEE-----------------ETTSCEEEEETTTBE
T ss_pred             cccccccccccccccccccc---ccc-cccccccccccccceeeeccc-----------------ccccccccccccccc
Confidence            32 1 255677776653211   111 123567889999998445541                 234678889988766


Q ss_pred             EEEEeCC-CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec----CC---CCCCceEECCCCCEEEEEe
Q 018242          193 VTVLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ----LP---GFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       193 ~~~~~~~-~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~~---~~p~~i~~d~~G~lwv~~~  264 (359)
                      ....... ......++++|+++.++ +...++.+..|++.....  ...+..    ..   +....++++++|++.++..
T Consensus       181 ~~~~~~~~~~~i~~v~~~p~~~~l~-~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         181 FKSTFGEHTKFVHSVRYNPDGSLFA-STGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccCccccccc-cccccccccccccccccc--cccccccccccccccccccccccCCCCCEEEEEe
Confidence            5554433 33457899999998544 455678899999764321  112211    11   1124578999998776655


Q ss_pred             cCCCccccccccCC-ccceeeecCCc
Q 018242          265 SRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       265 ~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      ..+.     +.+++ .++++++.++.
T Consensus       258 ~Dg~-----v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         258 ADKT-----IKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             TTSE-----EEEEETTTTEEEEEEEC
T ss_pred             CCCe-----EEEEECCCCcEEEEEEC
Confidence            4443     55554 46777766543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.01  E-value=3.5e-07  Score=80.81  Aligned_cols=157  Identities=9%  Similarity=-0.087  Sum_probs=104.1

Q ss_pred             CceEEEccCCCeeEEecC-----CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeE
Q 018242           36 PESLAFDALGEGPYTGVS-----DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDL  110 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l  110 (359)
                      ..++++.|||+.+|+...     .+.++.+|..+++....                    + . .+...+++++|++..+
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~--------------------~-~-~~~~~~~a~SpDG~~l   80 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--------------------V-N-GGFLPNPVAAHSGSEF   80 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE--------------------E-e-CCCCccEEEcCCCCEE
Confidence            457888999998888643     35799999988754321                    1 1 1223379999977778


Q ss_pred             EEEeCC----------CcEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeec
Q 018242          111 YIADAY----------FGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSG  177 (359)
Q Consensus       111 ~v~~~~----------~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~  177 (359)
                      +++...          +.|..+|..+++..........   .....+..+.++++|+++|+....               
T Consensus        81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---------------  145 (373)
T d2madh_          81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---------------  145 (373)
T ss_pred             EEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc---------------
Confidence            887532          2377889988876433221111   112356778999999877776321               


Q ss_pred             CCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          178 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       178 ~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                       ..+.+..++..+.+...   ....|.+++++++++.+|++...++.+.+++....
T Consensus       146 -~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         146 -AGPAVGLVVQGGSSDDQ---LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             -CCCceEEeeccCCeEEE---EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence             12345556665444332   23457889999999999999999999999987654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=1.4e-07  Score=81.73  Aligned_cols=159  Identities=9%  Similarity=-0.034  Sum_probs=104.6

Q ss_pred             eeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-CcEEEEeCC
Q 018242           47 GPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-FGLLKVGPE  125 (359)
Q Consensus        47 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-~~i~~~~~~  125 (359)
                      .++++..+++|..||..+.+....-                  ........|.+++++|++..+|++... +.|..+|.+
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i------------------~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~   64 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEE------------------ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC
Confidence            4667778899999999987543311                  122233558899999955567887654 459999999


Q ss_pred             CCeEEEEeecC-CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCc
Q 018242          126 GGLATAVATQS-EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN  204 (359)
Q Consensus       126 ~~~~~~~~~~~-~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~  204 (359)
                      +++........ .......+.+++++|+|+++|++.......  .+    ........+..+|..+++..........|.
T Consensus        65 t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~--~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  138 (337)
T d1pbyb_          65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE--LT----HFEVQPTRVALYDAETLSRRKAFEAPRQIT  138 (337)
T ss_dssp             TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC--SS----CEEECCCEEEEEETTTTEEEEEEECCSSCC
T ss_pred             CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcce--ee----eccccccceeeccccCCeEEEeccccCCce
Confidence            98865433211 122235678999999999888874321100  00    001123467888988877765555556789


Q ss_pred             eEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          205 GVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       205 gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ++++++||+.+|+++   +.+..|+...
T Consensus       139 ~~~~s~dg~~l~~~~---~~~~~~d~~~  163 (337)
T d1pbyb_         139 MLAWARDGSKLYGLG---RDLHVMDPEA  163 (337)
T ss_dssp             CEEECTTSSCEEEES---SSEEEEETTT
T ss_pred             EEEEcCCCCEEEEEc---CCcceeeeec
Confidence            999999999888875   3356677644

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=1.4e-07  Score=82.77  Aligned_cols=194  Identities=11%  Similarity=-0.072  Sum_probs=114.5

Q ss_pred             CceE-EEccCCCeeEEec-----CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCe
Q 018242           36 PESL-AFDALGEGPYTGV-----SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGD  109 (359)
Q Consensus        36 p~~i-~~~~~G~~l~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~  109 (359)
                      |..+ +..|||+++|+..     ....++.||..+++...                    .+ .. +...+++++|++..
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~--------------------~~-~~-g~~~~~a~SpDg~~   60 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG--------------------MI-DG-GFLPNPVVADDGSF   60 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE--------------------EE-EE-CSSCEEEECTTSSC
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE--------------------EE-EC-CCCCceEEcCCCCE
Confidence            4444 4578999898864     33579999999875322                    11 11 22337999997777


Q ss_pred             EEEEeCC----------CcEEEEeCCCCeEEEEeecCC---CccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242          110 LYIADAY----------FGLLKVGPEGGLATAVATQSE---GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       110 l~v~~~~----------~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      ||+++..          +.|..+|..+++.........   ..-...+..++++++|+++++++..              
T Consensus        61 l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~--------------  126 (355)
T d2bbkh_          61 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS--------------  126 (355)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS--------------
T ss_pred             EEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC--------------
Confidence            8887531          248889999887654322111   1122467889999999988888543              


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCC--------CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC--CC
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGN--------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PG  246 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~--------~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~  246 (359)
                        ....+..++..+++.......        ...+..+++++|++.+++.....+.+..++...........+...  ..
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (355)
T d2bbkh_         127 --PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ  204 (355)
T ss_dssp             --SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred             --CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC
Confidence              123466677766654332111        112346788899998998888888777777543222111111000  01


Q ss_pred             CCCce-EECCCCCEEEEEecCC
Q 018242          247 FPDNI-KRSPRGGFWVGIHSRR  267 (359)
Q Consensus       247 ~p~~i-~~d~~G~lwv~~~~~~  267 (359)
                      .+..+ ..+.+|++++.....+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTS
T ss_pred             CCCeEEEecCCCeEEEEecCCC
Confidence            11223 3345667777766554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.94  E-value=1e-07  Score=86.27  Aligned_cols=209  Identities=14%  Similarity=0.065  Sum_probs=123.7

Q ss_pred             CCceEEE--ccCCCeeEEe-cCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEE
Q 018242           35 GPESLAF--DALGEGPYTG-VSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLY  111 (359)
Q Consensus        35 ~p~~i~~--~~~G~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~  111 (359)
                      .|+....  .+||+.+|+. ..+++|-++|+++.+...+.                  . .+....|+|++++++...+|
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii------------------~-iP~g~gphgi~~spdg~t~Y  131 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKIT------------------H-IPNVQAIHGLRLQKVPKTNY  131 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE------------------E-CTTCCCEEEEEECCSSBCCE
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEE------------------e-cCCCCCccceEEeccCCEEE
Confidence            3554444  4789988876 46689999999987544321                  1 12345699999999677778


Q ss_pred             EEeCC-Cc------------------EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCcccc-----
Q 018242          112 IADAY-FG------------------LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQR-----  167 (359)
Q Consensus       112 v~~~~-~~------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~-----  167 (359)
                      |+... ..                  +..+|..+.++......     ...+..+.++++|+++|++.....-..     
T Consensus       132 V~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v-----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~  206 (441)
T d1qnia2         132 VFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV-----DGNLDNTDADYTGKYATSTCYNSERAVDLAGT  206 (441)
T ss_dssp             EEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             EEeccCCcccccCcccccccccccceEEeecCccceeeEEEec-----CCCccceEECCCCCEEEEEecCCCceEEEecc
Confidence            76432 11                  23466666554321111     135788999999999999864321000     


Q ss_pred             ----cccee--------ee-----eecCCCceEEEEeC-CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          168 ----RNHIS--------VI-----LSGDKTGRLMKYDP-ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       168 ----~~~~~--------~~-----~~~~~~g~v~~~d~-~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                          ..+..        ..     .......++..++. .+..+.........|.|++++|||+++|+++..++.+.+||
T Consensus       207 t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d  286 (441)
T d1qnia2         207 MRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA  286 (441)
T ss_dssp             TCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred             CcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEE
Confidence                00000        00     00001123444443 33333333445577999999999999999999999999999


Q ss_pred             cCC------CCCcceeEe-ec--CCCCCCceEECCCCCEEEEEecCC
Q 018242          230 LKT------SKAGTIEIV-AQ--LPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       230 ~~~------~~~~~~~~~-~~--~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      +..      +++.....+ .+  ..-.|-.-.+|++|+.|.+..-..
T Consensus       287 ~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds  333 (441)
T d1qnia2         287 IDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDS  333 (441)
T ss_dssp             GGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT
T ss_pred             eehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccc
Confidence            742      112111111 12  111244468999999998876544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.94  E-value=1.9e-07  Score=81.80  Aligned_cols=243  Identities=9%  Similarity=-0.056  Sum_probs=136.9

Q ss_pred             CCEEEEeeCCCCCCceEEEccCCCeeEEecC----------CCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccc
Q 018242           23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE   92 (359)
Q Consensus        23 ~~~~~~~~~~~~~p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (359)
                      +.+.++..+  ..| +++++|||+.+|+...          ++.|..||..+++.......+..             ...
T Consensus        39 ~~~~~~~~g--~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~-------------~~~  102 (355)
T d2bbkh_          39 RVIGMIDGG--FLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA-------------PRF  102 (355)
T ss_dssp             EEEEEEEEC--SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC-------------CCC
T ss_pred             cEEEEEECC--CCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc-------------cee
Confidence            334456555  244 7999999998887543          46799999988764432211100             011


Q ss_pred             ccCCcceEEEEecCCCeEEEEeCCC--cEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCcccc
Q 018242           93 HICGRPLGLCFNKTNGDLYIADAYF--GLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQR  167 (359)
Q Consensus        93 ~~~~~p~gi~~~~~~g~l~v~~~~~--~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~~  167 (359)
                      .....|.+++++++++.+++++...  .+..++..+++..........   .+......+.+.++|+.+++.........
T Consensus       103 ~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence            2234578899999777788886543  366778888765432221110   11223345788899887777643221000


Q ss_pred             ----------cc----------ceeeeeecCCCceEEEEeCCCCcEEEEeCC-------------CCCCceEEEccCCCE
Q 018242          168 ----------RN----------HISVILSGDKTGRLMKYDPATKQVTVLLGN-------------LSFPNGVALSEDGNY  214 (359)
Q Consensus       168 ----------~~----------~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------~~~p~gia~~~d~~~  214 (359)
                                ..          ....+......+.++.++..+++...+...             ......+++++|++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence                      00          000111123345677777776655433210             012346899999999


Q ss_pred             EEEEecCC---------CEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC--EEEEEecCCCccccccccCC-ccce
Q 018242          215 ILLAETTS---------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG--FWVGIHSRRKGISKLVLSFP-WIGN  282 (359)
Q Consensus       215 l~v~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~-~~g~  282 (359)
                      +|++....         +.|..||....+..  ..+ ..+..|.++++++||+  ++++....+.     +.+++ .+|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~--~~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~-----i~v~D~~tg~  334 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERL--AKF-EMGHEIDSINVSQDEKPLLYALSTGDKT-----LYIHDAESGE  334 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEE-EEEEEECEEEECCSSSCEEEEEETTTTE-----EEEEETTTCC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcEE--EEe-cCCCCEEEEEEcCCCCeEEEEEECCCCE-----EEEEECCCCC
Confidence            99876543         47888987644221  111 1233478899999996  4555444333     44444 4666


Q ss_pred             eeecCCc
Q 018242          283 VLIKLPI  289 (359)
Q Consensus       283 ~~~~~~~  289 (359)
                      +++.++.
T Consensus       335 ~~~~i~~  341 (355)
T d2bbkh_         335 ELRSVNQ  341 (355)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            6666543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.91  E-value=1.1e-06  Score=76.53  Aligned_cols=166  Identities=10%  Similarity=0.053  Sum_probs=106.0

Q ss_pred             CCCCCCceEEEccCCCeeEEecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCC
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNG  108 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g  108 (359)
                      +.-....+++++|||+.++++..+  ..|+.||.++++.+.+                     .........++++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~---------------------~~~~~~v~~~~~spdg~   98 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF---------------------EENLGNVFAMGVDRNGK   98 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC---------------------CCCCCSEEEEEECTTSS
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe---------------------eCCCceEEeeeeccccc
Confidence            333567899999999877655443  3688999988754432                     23334567899999555


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeC
Q 018242          109 DLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDP  188 (359)
Q Consensus       109 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  188 (359)
                      .|..+.....+..++.++++.......    .......++++|+|++|.++.......        ......+.+..++.
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~la~~~~~~~~~--------~~~~~~~~~~v~d~  166 (360)
T d1k32a3          99 FAVVANDRFEIMTVDLETGKPTVIERS----REAMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDM  166 (360)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC----SSSCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEET
T ss_pred             ccceeccccccccccccccceeeeeec----ccccccchhhccceeeeeeeccccccc--------eeeccccceeeecc
Confidence            555556556688999988876544331    123456799999999655542211000        01122345778898


Q ss_pred             CCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEc
Q 018242          189 ATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL  230 (359)
Q Consensus       189 ~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~  230 (359)
                      .+++...+..........+++|||+.|++.. .++.+..|+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~~~d~  207 (360)
T d1k32a3         167 EGRKIFAATTENSHDYAPAFDADSKNLYYLS-YRSLDPSPDR  207 (360)
T ss_dssp             TTTEEEECSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEECS
T ss_pred             ccCceeeecccccccccccccCCCCEEEEEe-CCCceEcccc
Confidence            8776665544444556789999999877665 4445556654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.9e-07  Score=79.75  Aligned_cols=185  Identities=9%  Similarity=-0.021  Sum_probs=121.4

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -..+++++++.+++++..++.|..|+..+.+....                    ..........+++++++..++++..
T Consensus       144 v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~--------------------~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ--------------------FQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--------------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccc
Confidence            34778899999788888889999999887643321                    1122234567888885556666665


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.+..+|.++++.......     ...+..++++++++.+.++                  ...+.+..+|.+++....
T Consensus       204 d~~v~i~d~~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~~------------------~~d~~i~i~d~~~~~~~~  260 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQHDF-----TSQIFSLGYCPTGEWLAVG------------------MESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-----SSCEEEEEECTTSSEEEEE------------------ETTSCEEEEETTSSCEEE
T ss_pred             cccccccccccceeeccccc-----ccceEEEEEccccccccee------------------cccccccccccccccccc
Confidence            56688889988764332221     1246788999999944444                  224578888888766655


Q ss_pred             EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          196 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       196 ~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                      ..........++++|+++. +++...++.|..|+....+.  .... ...+....++++++|++.++....+
T Consensus       261 ~~~~~~~i~~v~~s~~g~~-l~s~s~Dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYGAS--IFQS-KESSSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCE--EEEE-ECSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ccccccccceEEECCCCCE-EEEEeCCCeEEEEECCCCCE--EEEc-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            4444455688999999985 45556778999999764321  1111 1223345688999998766554433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.84  E-value=1.9e-07  Score=83.00  Aligned_cols=190  Identities=9%  Similarity=-0.001  Sum_probs=109.5

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++|+|+++.++..++.|..||.+++.+....                  ...........+.++|++..++++.
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~------------------~~~~~~~~v~~i~~~p~~~~l~~~s  114 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL------------------VILRINRAARCVRWAPNEKKFAVGS  114 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE------------------ECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc------------------ccccccccccccccccccccceeec
Confidence            3468999999997888888899999999876544321                  2222234467899999555555555


Q ss_pred             CCCcEEEEeC--CCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCc
Q 018242          115 AYFGLLKVGP--EGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQ  192 (359)
Q Consensus       115 ~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  192 (359)
                      ..+.+..++.  ...... ...... .....+..++++|+|+ ++++-                 +..+.|..++.....
T Consensus       115 ~d~~i~i~~~~~~~~~~~-~~~~~~-~~~~~v~~v~~~p~~~-~l~s~-----------------s~D~~v~v~~~~~~~  174 (371)
T d1k8kc_         115 GSRVISICYFEQENDWWV-CKHIKK-PIRSTVLSLDWHPNSV-LLAAG-----------------SCDFKCRIFSAYIKE  174 (371)
T ss_dssp             TTSSEEEEEEETTTTEEE-EEEECT-TCCSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEECCCTT
T ss_pred             ccCcceeeeeeccccccc-cccccc-cccccccccccccccc-ceecc-----------------ccCcEEEEEeeccCc
Confidence            4444444443  333221 111111 1123566789999999 44441                 123445555543221


Q ss_pred             E------------------E-EEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          193 V------------------T-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       193 ~------------------~-~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                      .                  . ..........+++++|+++.++. ...++.|..||+....  ....+.........+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s-~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~s~~f  251 (371)
T d1k8kc_         175 VEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VSHDSTVCLADADKKM--AVATLASETLPLLAVTF  251 (371)
T ss_dssp             TSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE-EETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEE
T ss_pred             cccccccccccccccceeeeeeccCccCcEEEEEeecccccccc-cccCCcceEEeeeccc--ceeeeecccccceeeee
Confidence            1                  1 11112223468899999986554 4567899999986532  12222221121256888


Q ss_pred             CCCCCEEEEEec
Q 018242          254 SPRGGFWVGIHS  265 (359)
Q Consensus       254 d~~G~lwv~~~~  265 (359)
                      .++|.+.++..+
T Consensus       252 s~d~~~la~g~d  263 (371)
T d1k8kc_         252 ITESSLVAAGHD  263 (371)
T ss_dssp             EETTEEEEEETT
T ss_pred             cCCCCEEEEEcC
Confidence            888877776544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.83  E-value=2e-07  Score=81.61  Aligned_cols=174  Identities=13%  Similarity=0.003  Sum_probs=109.6

Q ss_pred             EEEcc-CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           39 LAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        39 i~~~~-~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      ..|+| ||+ +++...++.|+.||.+++...++                      ........++++|++..|+++....
T Consensus         8 ~~fSP~dG~-~~a~~~~g~v~v~d~~~~~~~~~----------------------~~~~~v~~~~~spDg~~l~~~~~~~   64 (360)
T d1k32a3           8 EDFSPLDGD-LIAFVSRGQAFIQDVSGTYVLKV----------------------PEPLRIRYVRRGGDTKVAFIHGTRE   64 (360)
T ss_dssp             EEEEECGGG-CEEEEETTEEEEECTTSSBEEEC----------------------SCCSCEEEEEECSSSEEEEEEEETT
T ss_pred             ccccCCCCC-EEEEEECCeEEEEECCCCcEEEc----------------------cCCCCEEEEEECCCCCEEEEEEcCC
Confidence            45788 899 56556678999999988754432                      1224467899999444555544333


Q ss_pred             --cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          118 --GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       118 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                        -|..++.++++.+.+..     ....+..++++|+|++|..+                  ...+.++.++.++++...
T Consensus        65 g~~v~v~d~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~~~------------------~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3          65 GDFLGIYDYRTGKAEKFEE-----NLGNVFAMGVDRNGKFAVVA------------------NDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             EEEEEEEETTTCCEEECCC-----CCCSEEEEEECTTSSEEEEE------------------ETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCcEEEeeC-----CCceEEeeeeccccccccee------------------ccccccccccccccceee
Confidence              37788999988765432     12356789999999955554                  224578889988777655


Q ss_pred             Ee-CCCCCCceEEEccCCCEEEEEecC---------CCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242          196 LL-GNLSFPNGVALSEDGNYILLAETT---------SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       196 ~~-~~~~~p~gia~~~d~~~l~v~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  261 (359)
                      .. ........++++|||+++.++...         .+.+..|++....   .............+++.++|+..+
T Consensus       122 ~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEE
T ss_pred             eeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc---eeeecccccccccccccCCCCEEE
Confidence            43 333456789999999987765422         2357777765431   111111112223467788886433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.82  E-value=9.6e-07  Score=76.18  Aligned_cols=224  Identities=10%  Similarity=0.027  Sum_probs=113.6

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .-.+++++++|.++.++..++.|..||..+++...                    .+.........+++++++..++.+.
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--------------------~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--------------------AIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--------------------EEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccceeEE--------------------EEecccccEEeeEeeccceeeeeec
Confidence            45689999999988888999999999998764322                    1122223457888998444455555


Q ss_pred             CCCcEEEEeCCCCeE-----EEEeecCCCcc----ccccceEEEeCCCCEEEEEeCCCccc------c---------ccc
Q 018242          115 AYFGLLKVGPEGGLA-----TAVATQSEGIP----FRFCNSLDIDQSTGIIYFTDSSSQFQ------R---------RNH  170 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~-----~~~~~~~~~~~----~~~~~~l~~d~~g~~l~v~d~~~~~~------~---------~~~  170 (359)
                      ....+..++......     ..+........    .....-.....+.. ...........      .         ...
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTE-EEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             ccceeecccccccccccccceeccccccccccccccccccccccccccc-ccccccccccccccccccceeEeeeccccc
Confidence            444455555433211     11100000000    00000000111111 11111000000      0         000


Q ss_pred             eeeeeecCCCceEEEEeCCCCcEEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec--CCCC
Q 018242          171 ISVILSGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGF  247 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~  247 (359)
                      ...+..+...+.|..+|..+++..... ........++++|+++. +++...++.|..|++....  ....+..  ....
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~-l~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~  272 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQ--ELMTYSHDNIICG  272 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTE--EEEEECCTTCCSC
T ss_pred             cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeecccc--cccccccccccCc
Confidence            001112234567888898776654433 33344578999999985 4555677889999975431  1122211  1122


Q ss_pred             CCceEECCCCCEEEEEecCCCccccccccCC-ccceeeecC
Q 018242          248 PDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKL  287 (359)
Q Consensus       248 p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~  287 (359)
                      ...++++++|++.++....+.     +..++ ..++.+..+
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~-----i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFN-----CNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSC-----EEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCE-----EEEEECCCCcEEEEE
Confidence            345888999987776555443     44444 345544443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=6.4e-06  Score=69.58  Aligned_cols=154  Identities=12%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE-Ee
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI-AD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v-~~  114 (359)
                      -.+++++|+|++++++..++.|..||..+++...                    .+.........+++++ ++.+.+ +.
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~--------------------~~~~h~~~V~~~~~~~-~~~~~~~~~   78 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------TLKGHTDSVQDISFDH-SGKLLASCS   78 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------------EECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE--------------------EEeCCCCcEEEEeeec-ccccccccc
Confidence            3589999999988888899999999988764221                    2222234467888998 555444 44


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ....+...+....+......   . .......+.+.++++.+..+                  ...+.+..++..++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~------------------~~d~~~~~~~~~~~~~~  136 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRTMH---G-HDHNVSSVSIMPNGDHIVSA------------------SRDKTIKMWEVQTGYCV  136 (317)
T ss_dssp             TTSCCCEEETTSSCEEECCC---C-CSSCEEEEEECSSSSEEEEE------------------ETTSEEEEEETTTCCEE
T ss_pred             cccccccccccccccccccc---c-ccccceeeeccCCCceEEee------------------ccCcceeEeecccceee
Confidence            44445666665554332211   1 12345667888999844333                  22456777887766544


Q ss_pred             E-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          195 V-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       195 ~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      . +.........++++++++. +++...++.|..|+....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~  175 (317)
T d1vyhc1         137 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATK  175 (317)
T ss_dssp             EEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTC
T ss_pred             eEEccCCCcceeeecccCCCE-EEEEeCCCeEEEEeeccc
Confidence            3 3333445678889999884 555567788999987543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1.6e-05  Score=69.85  Aligned_cols=203  Identities=14%  Similarity=0.012  Sum_probs=110.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEE-EeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      -.++++++||+++.++. ++.|..||..+++... +......   ...+.................+++++++..|+.+.
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAA---NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccc---cccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            45899999999666665 7899999988764332 2110000   00000000000011112346789999434444455


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..++...++.......    ....+..+.+.+++..+..+                  ...+.+..+|..+....
T Consensus       141 ~dg~v~i~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~------------------~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         141 EDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGDKLVSG------------------SGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             TTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEE------------------ETTSEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccc----cccccccccccccccccccc------------------ccceeeeeeeccccccc
Confidence            444588888887765433221    12346678888998844444                  22457888888766554


Q ss_pred             EEeCCCCCCceEEEcc-CCCEEEEEecCCCEEEEEEcCCCCCcceeEeec----C---CCCCCceEECCCCCEEEEEecC
Q 018242          195 VLLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ----L---PGFPDNIKRSPRGGFWVGIHSR  266 (359)
Q Consensus       195 ~~~~~~~~p~gia~~~-d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~----~---~~~p~~i~~d~~G~lwv~~~~~  266 (359)
                      ...........+++.+ +++ ++++...++.|..|+......  ...+..    .   .+....++++++|++.++....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccCCCCC-eEEEEcCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            4333333334455554 555 556666778899999764321  111111    1   1123457888999866655444


Q ss_pred             C
Q 018242          267 R  267 (359)
Q Consensus       267 ~  267 (359)
                      +
T Consensus       276 ~  276 (388)
T d1erja_         276 R  276 (388)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.73  E-value=2.6e-05  Score=68.31  Aligned_cols=157  Identities=11%  Similarity=-0.023  Sum_probs=92.5

Q ss_pred             CceEEEccCCCeeEEecC----------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEec
Q 018242           36 PESLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNK  105 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~  105 (359)
                      +.+++++|||+.++++..          ++.|..||..+++.......+..             ........|.++.+++
T Consensus        68 ~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-------------~~~~~~~~~~~~~~s~  134 (373)
T d2madh_          68 LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFDVGPYSWMNANTP  134 (373)
T ss_pred             CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCc-------------ceeEeccCCCcEEEEe
Confidence            337999999998887653          36789999988765432211100             0111223467889999


Q ss_pred             CCCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceE
Q 018242          106 TNGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRL  183 (359)
Q Consensus       106 ~~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v  183 (359)
                      ++..+++....  +.+..++..+.+....        ...+..+.+.++|+++|++...                 .+.+
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~g~~~~v~~~~-----------------dg~~  189 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDDQL--------LSSPTCYHIHPGAPSTFYLLCA-----------------QGGL  189 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEEEE--------eccceeEEEecCCCcEEEEEcC-----------------CCeE
Confidence            67777776543  2355666665554321        1245678899999878887432                 4678


Q ss_pred             EEEeCCCCcEEEEeCC-----CCC--CceEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          184 MKYDPATKQVTVLLGN-----LSF--PNGVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       184 ~~~d~~~~~~~~~~~~-----~~~--p~gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                      ..++..++........     ...  +.....++++  .++....++.+..++...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         190 AKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISA  243 (373)
T ss_pred             EEEEcCCceeeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCC
Confidence            8888776655433211     112  2334444444  344445667777777654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.72  E-value=3.8e-07  Score=79.12  Aligned_cols=143  Identities=12%  Similarity=0.030  Sum_probs=88.9

Q ss_pred             EEEEecCCCeEEE-EeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          100 GLCFNKTNGDLYI-ADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       100 gi~~~~~~g~l~v-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      |+++++ +++.++ ++..+.|..+|.+++++...... +  ....|.+++++|||+++|++...                
T Consensus         1 g~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~-~--~~~~p~~l~~spDG~~l~v~~~~----------------   60 (346)
T d1jmxb_           1 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-P--DKFGPGTAMMAPDNRTAYVLNNH----------------   60 (346)
T ss_dssp             CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEEC-S--SCCSSCEEEECTTSSEEEEEETT----------------
T ss_pred             CccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEc-C--CCCCcceEEECCCCCEEEEEECC----------------
Confidence            345666 555555 45566799999999986432221 1  12357899999999988998432                


Q ss_pred             CCceEEEEeCCCCcEEEEe-CC------CCCCceEEEccCCCEEEEEecC-----------CCEEEEEEcCCCCCcceeE
Q 018242          179 KTGRLMKYDPATKQVTVLL-GN------LSFPNGVALSEDGNYILLAETT-----------SCRILRYWLKTSKAGTIEI  240 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~-~~------~~~p~gia~~~d~~~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~  240 (359)
                       .+.|..||..+++..... ..      ...|.+++++|||+.+|++...           ...+..++...........
T Consensus        61 -~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence             467999999887654322 11      1357899999999999998643           3456666654322111111


Q ss_pred             eecCCCCCCceEECCCCCEEEEE
Q 018242          241 VAQLPGFPDNIKRSPRGGFWVGI  263 (359)
Q Consensus       241 ~~~~~~~p~~i~~d~~G~lwv~~  263 (359)
                      ....+.....+....+++++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         140 TFPMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             EEECCSSCCCEEECTTSCEEEES
T ss_pred             eeeccCceEEEEecCCCEEEEeC
Confidence            11122223345556677777754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.72  E-value=1.2e-06  Score=77.56  Aligned_cols=231  Identities=7%  Similarity=-0.096  Sum_probs=131.9

Q ss_pred             eEEEccCCCeeEEecC----------CCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC
Q 018242           38 SLAFDALGEGPYTGVS----------DGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN  107 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~----------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~  107 (359)
                      .+++.+||+.+|+...          ++.|..||+.+.+.......+..             ........|.++++++++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~-------------~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-------------PRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-------------CSCCBSCCTTSEEECTTS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCcc-------------ceecccCCccceEECCCC
Confidence            6999999998887642          35699999988754432211100             111223457889999977


Q ss_pred             CeEEEEeCC-CcEEEEeCCCCeEEEEeecCCC---ccccccceEEEeCCCCEEEEEeCCCccc-----------cccc-e
Q 018242          108 GDLYIADAY-FGLLKVGPEGGLATAVATQSEG---IPFRFCNSLDIDQSTGIIYFTDSSSQFQ-----------RRNH-I  171 (359)
Q Consensus       108 g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~d~~g~~l~v~d~~~~~~-----------~~~~-~  171 (359)
                      ..+|+++.. +.+..+|..+++..........   .+......+++.+||+ +++.+......           .... .
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPAS-LAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTS-CEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCC-EEEEEecCCceeeeeeecccccccccce
Confidence            789998764 4588999998886544332111   0111223356667888 44443221100           0000 0


Q ss_pred             e-------eeeecCCCceEEEEeCCCCcEEEEeCC-------------CCCCceEEEccCCCEEEEEecCC--------C
Q 018242          172 S-------VILSGDKTGRLMKYDPATKQVTVLLGN-------------LSFPNGVALSEDGNYILLAETTS--------C  223 (359)
Q Consensus       172 ~-------~~~~~~~~g~v~~~d~~~~~~~~~~~~-------------~~~p~gia~~~d~~~l~v~~~~~--------~  223 (359)
                      .       ...-....+.++.++...+........             ...+..++++++++.+|++....        .
T Consensus       215 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~  294 (368)
T d1mdah_         215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE  294 (368)
T ss_dssp             CCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEE
T ss_pred             eecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCc
Confidence            0       000011234466666655544432211             01245789999999999876443        3


Q ss_pred             EEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC--EEEEEecCCCccccccccCC-ccceeeecCCcc
Q 018242          224 RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG--FWVGIHSRRKGISKLVLSFP-WIGNVLIKLPID  290 (359)
Q Consensus       224 ~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  290 (359)
                      .|++||.+..+..   .....+..+.++++++||+  +|++....+.     +.+++ .+|+.++.++++
T Consensus       295 ~v~v~D~~t~~~~---~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~-----v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         295 NTSSVTASVGQTS---GPISNGHDSDAIIAAQDGASDNYANSAGTEV-----LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEESSSCCEE---ECCEEEEEECEEEECCSSSCEEEEEETTTTE-----EEEEESSSCEEEEECCCC
T ss_pred             eEEEEECCCCcEe---EEecCCCceeEEEECCCCCEEEEEEeCCCCe-----EEEEECCCCCEEEEEECC
Confidence            6888887654211   1111234578899999996  5666655443     55555 578888888764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=6.4e-06  Score=72.60  Aligned_cols=187  Identities=12%  Similarity=0.106  Sum_probs=107.8

Q ss_pred             ceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC
Q 018242           37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY  116 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~  116 (359)
                      .+++++++|++++++..++.|..||..+.+....                    ..........+.+.+++..+..+...
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~--------------------~~~h~~~v~~~~~~~~~~~~~~~~~~  184 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI--------------------LQGHEQDIYSLDYFPSGDKLVSGSGD  184 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--------------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCcceecccccccccccccccccccc--------------------cccccccccccccccccccccccccc
Confidence            4789999999888999999999999887643321                    11222345677888855566666655


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEe-CCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID-QSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d-~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      +.+..++..+..........     .....+.+. ++++ +.++-                 ...+.|..++..++....
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~l~~~-----------------~~d~~i~i~~~~~~~~~~  241 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIE-----DGVTTVAVSPGDGK-YIAAG-----------------SLDRAVRVWDSETGFLVE  241 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECS-----SCEEEEEECSTTCC-EEEEE-----------------ETTSCEEEEETTTCCEEE
T ss_pred             eeeeeeeccccccccccccc-----cccccccccCCCCC-eEEEE-----------------cCCCeEEEeecccCccce
Confidence            56888898877654332211     122234444 4677 44431                 224568888877655433


Q ss_pred             EeC--------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcce---------eE-eecCCCCCCceEECCCC
Q 018242          196 LLG--------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI---------EI-VAQLPGFPDNIKRSPRG  257 (359)
Q Consensus       196 ~~~--------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~---------~~-~~~~~~~p~~i~~d~~G  257 (359)
                      ...        .......++++++++.+ ++...++.|..|++........         .. ..........++++++|
T Consensus       242 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  320 (388)
T d1erja_         242 RLDSENESGTGHKDSVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND  320 (388)
T ss_dssp             EEC------CCCSSCEEEEEECTTSSEE-EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG
T ss_pred             eeccccccccCCCCCEEEEEECCCCCEE-EEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC
Confidence            211        11234678999999854 5556678999999764321100         00 00011223457778888


Q ss_pred             CEEEEEecCC
Q 018242          258 GFWVGIHSRR  267 (359)
Q Consensus       258 ~lwv~~~~~~  267 (359)
                      ++.++....+
T Consensus       321 ~~l~sg~~dg  330 (388)
T d1erja_         321 EYILSGSKDR  330 (388)
T ss_dssp             CEEEEEETTS
T ss_pred             CEEEEEeCCC
Confidence            7655444433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.6e-05  Score=68.88  Aligned_cols=215  Identities=10%  Similarity=-0.009  Sum_probs=113.7

Q ss_pred             CCCceEEEccCCCeeEEecCCCE-EEEEEcCCcceEEEeecCCCCCCCCCCcccccccccc-cCCcceEEEEecC-CCeE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGR-IIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEH-ICGRPLGLCFNKT-NGDL  110 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gi~~~~~-~g~l  110 (359)
                      ..|.+++++++|+.+.++..+.. |..++.........                  ..+.. .......++|+|. ++.+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~------------------~~~~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV------------------VQFTGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE------------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccce------------------EEEeCCCCCCEEEEEEeeCCCCCE
Confidence            36778999999996655554332 34444332211100                  01111 1233568889874 4455


Q ss_pred             EEE-eCCCcEEEEeCCCCe----EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          111 YIA-DAYFGLLKVGPEGGL----ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       111 ~v~-~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      +++ +..+.|..++...++    ...............+..++++++|+++.++..+                ....+..
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~----------------~~~~~~~  143 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG----------------RDNFGVF  143 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC----------------SSCSEEE
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc----------------ccceEEE
Confidence            544 434446666654321    1110000000012245788999999955544221                1234555


Q ss_pred             EeCCCCcEEE-EeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecC---CCCCCceEECCC-CCEE
Q 018242          186 YDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPR-GGFW  260 (359)
Q Consensus       186 ~d~~~~~~~~-~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~-G~lw  260 (359)
                      ++.++++... +.........+++++++..++++...++.+..|+....+.  .......   ......+++.++ +.+.
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~~~pd~~~~l  221 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--SASDRTHHKQGSFVRDVEFSPDSGEFV  221 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--EEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred             EeecccccceeeeecccccccccccccccceEEEeeccccccccccccccc--ceecccccCCCCccEEeeeccccceec
Confidence            6665555433 3333344578999999887777777888999998643211  1111111   222355788886 5666


Q ss_pred             EEEecCCCccccccccCC-ccceeeecCCc
Q 018242          261 VGIHSRRKGISKLVLSFP-WIGNVLIKLPI  289 (359)
Q Consensus       261 v~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  289 (359)
                      ++....+.     +..++ ..++.+..+..
T Consensus       222 ~s~~~d~~-----i~iwd~~~~~~~~~l~~  246 (325)
T d1pgua1         222 ITVGSDRK-----ISCFDGKSGEFLKYIED  246 (325)
T ss_dssp             EEEETTCC-----EEEEETTTCCEEEECCB
T ss_pred             cccccccc-----eeeeeeccccccccccc
Confidence            65554443     45554 46666666544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.62  E-value=9.6e-07  Score=78.25  Aligned_cols=206  Identities=9%  Similarity=-0.112  Sum_probs=113.4

Q ss_pred             CCCceEEEccCCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCC---------CCCCccccc-ccc-----------
Q 018242           34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDG---------CEGAYEYDH-AAK-----------   91 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~-----------   91 (359)
                      ..|+++++++||+.+|++. ..+.+..||..+.+.......+.....         ...+.+... +..           
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            4688999999999888776 458899999988765443221111000         000000000 000           


Q ss_pred             ----cccCCcceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCC--------CccccccceEEEeCCCCEEEEE
Q 018242           92 ----EHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSE--------GIPFRFCNSLDIDQSTGIIYFT  159 (359)
Q Consensus        92 ----~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~d~~g~~l~v~  159 (359)
                          ......+.....++ ++.++... .+.++.++...+....+.....        .........++++++++.+|++
T Consensus       204 ~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANY-PGMLVWAV-ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCSCTTSCBCSCCEEETT-TTEEEECB-SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             cccccccccceeeccccc-CcEEEEec-CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence                00001122333444 34433322 3346666665555443321100        0111234568999998878887


Q ss_pred             eCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCC-EEEEEecCCCEEEEEEcCCCCCcce
Q 018242          160 DSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTI  238 (359)
Q Consensus       160 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~-~l~v~~~~~~~i~~~~~~~~~~~~~  238 (359)
                      .......         .......|+.+|..+++..........+.+++++|||+ .+|++...++.|.+||....+   .
T Consensus       282 ~~~~~~~---------~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk---~  349 (368)
T d1mdah_         282 TVEHSRS---------CLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ---D  349 (368)
T ss_dssp             EEECSSC---------TTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE---E
T ss_pred             ecCCCce---------eecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC---E
Confidence            4321100         01112358899998876544333334578999999997 589999989999999975542   2


Q ss_pred             eEeecCCCCCCceEE
Q 018242          239 EIVAQLPGFPDNIKR  253 (359)
Q Consensus       239 ~~~~~~~~~p~~i~~  253 (359)
                      .....++..|.+|++
T Consensus       350 ~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         350 QSSVELDKGPESLSV  364 (368)
T ss_dssp             EEECCCCSCCCEEEC
T ss_pred             EEEEECCCCCCEEEE
Confidence            222235556888876

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.59  E-value=1.6e-06  Score=73.92  Aligned_cols=153  Identities=12%  Similarity=0.081  Sum_probs=95.9

Q ss_pred             CCCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ..+.++++.++|+ +.+....+.+..|+....  ...                      ........+++++++..+.++
T Consensus       100 ~~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~~--~~~----------------------~~~~~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2         100 SQPLGLAVSADGD-IAVAACYKHIAIYSHGKL--TEV----------------------PISYNSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             SCEEEEEECTTSS-CEEEEESSEEEEEETTEE--EEE----------------------ECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccccccccccc-cccccccccccccccccc--ccc----------------------ccccccccccccccccccccc
Confidence            3566889999999 444445578888885432  111                      112335678888844455556


Q ss_pred             eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          114 DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ...+.|..+|.++++...+.....   ...+..+++++++++++.+                  ...+.|..+|..++..
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~------------------~~d~~i~~~~~~~~~~  213 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVAT------------------DQSRKVIPYSVANNFE  213 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEE------------------ETTSCEEEEEGGGTTE
T ss_pred             cccccccccccccccccccccccc---ccccccccccccccccccc------------------cccccccccccccccc
Confidence            655568888888776544322111   1356789999999944444                  2245788888765443


Q ss_pred             EEEeC----CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          194 TVLLG----NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       194 ~~~~~----~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .....    +......++++|+++. +++...++.|..|++...
T Consensus       214 ~~~~~~~~~h~~~v~~l~~s~~~~~-l~sgs~dg~i~iwd~~~~  256 (299)
T d1nr0a2         214 LAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKP  256 (299)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCT
T ss_pred             ccccccccccccccccccccccccc-eEEEcCCCEEEEEECCCC
Confidence            22111    1233567899999985 455556789999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.48  E-value=5.2e-07  Score=81.62  Aligned_cols=98  Identities=11%  Similarity=0.046  Sum_probs=67.8

Q ss_pred             eCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe--CCCCCCceEEEccCCCEEEEEecCCCEE--
Q 018242          150 DQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRI--  225 (359)
Q Consensus       150 d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~p~gia~~~d~~~l~v~~~~~~~i--  225 (359)
                      .+||++|||++..                 ...|.++|+++.+...+.  +....|.+++++||++++|+++.....+  
T Consensus        80 tpDGr~lfV~d~~-----------------~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          80 RYDGKYLFINDKA-----------------NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             EEEEEEEEEEETT-----------------TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred             cCCCCEEEEEcCC-----------------CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccc
Confidence            5899999999754                 347999999988766543  3467899999999999999987665544  


Q ss_pred             ----------------EEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEEecCC
Q 018242          226 ----------------LRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRR  267 (359)
Q Consensus       226 ----------------~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~~~~~  267 (359)
                                      ..+|....   ....-...++.|.++.++++|+ +|+++....
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~---~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse  198 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETM---DVAWQVIVDGNLDNTDADYTGKYATSTCYNSE  198 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTC---SEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred             cCcccccccccccceEEeecCccc---eeeEEEecCCCccceEECCCCCEEEEEecCCC
Confidence                            22332221   1111112345689999999997 666666543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.47  E-value=1.1e-05  Score=69.25  Aligned_cols=153  Identities=9%  Similarity=0.006  Sum_probs=98.6

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      -......+.+.++.++..++.|..||..+.+...                    .+.........+++++++..++++..
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~--------------------~~~~h~~~i~~v~~~p~~~~l~s~s~  246 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ--------------------TFTGHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--------------------EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeeeccccccceeEEeecCceEEEEECCCCcEEE--------------------EEeCCCCCeEEEEECCCCCEEEEEeC
Confidence            3456666777767778888999999988764322                    12222344678999994444444554


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEE
Q 018242          116 YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTV  195 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  195 (359)
                      .+.|..++............  ......+..++++++|++|..+                  ...+.|..||..+++...
T Consensus       247 d~~i~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~g------------------~~dg~i~iwd~~~~~~~~  306 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAG------------------YDDFNCNVWDALKADRAG  306 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECC--TTCCSCEEEEEECSSSCEEEEE------------------ETTSCEEEEETTTCCEEE
T ss_pred             CCeEEEEeeccccccccccc--ccccCceEEEEECCCCCEEEEE------------------ECCCEEEEEECCCCcEEE
Confidence            55588888887654332221  1122346789999999944443                  235679999987766554


Q ss_pred             Ee-CCCCCCceEEEccCCCEEEEEecCCCEEEEEE
Q 018242          196 LL-GNLSFPNGVALSEDGNYILLAETTSCRILRYW  229 (359)
Q Consensus       196 ~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~  229 (359)
                      .. .+......++++||++.+ ++.+.++.|..||
T Consensus       307 ~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 VLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             EEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence            33 334456889999999854 5556778888875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=0.00021  Score=60.87  Aligned_cols=263  Identities=11%  Similarity=0.038  Sum_probs=128.5

Q ss_pred             EccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEE
Q 018242           41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLL  120 (359)
Q Consensus        41 ~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~  120 (359)
                      ++++|++++++..++.|..||..+++...                    .+.........+++++ ++.|+.+...+.|.
T Consensus        19 ~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~--------------------~l~~H~~~V~~l~~s~-~~~l~s~s~D~~i~   77 (355)
T d1nexb2          19 LQFEDNYVITGADDKMIRVYDSINKKFLL--------------------QLSGHDGGVWALKYAH-GGILVSGSTDRTVR   77 (355)
T ss_dssp             EEEETTEEEEEETTTEEEEEETTTTEEEE--------------------EEECCSSCEEEEEEET-TTEEEEEETTCCEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCcEEE--------------------EEECCCCCEEEEEEcC-CCEEEEEecccccc
Confidence            45567878899999999999998764322                    2222334467899988 77777666555688


Q ss_pred             EEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeC--
Q 018242          121 KVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLG--  198 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--  198 (359)
                      .++....+.........  ...........++++.+..+                  ...+.|..++..+........  
T Consensus        78 iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------------~~d~~i~iw~~~~~~~~~~~~~~  137 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTG------------------SRDNTLHVWKLPKESSVPDHGEE  137 (355)
T ss_dssp             EEETTTTEEEEEECCCS--SCEEEEEEEEETTEEEEEEE------------------ETTSEEEEEECCC----------
T ss_pred             ccccccccccccccccc--ccccccccccccccceeeee------------------cCCCcEEEEEccCCceecccccc
Confidence            88888776443222111  11122334455666522222                  123455556654332211000  


Q ss_pred             ---------CC-----------CCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCC
Q 018242          199 ---------NL-----------SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG  258 (359)
Q Consensus       199 ---------~~-----------~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  258 (359)
                               ..           ....-.+..++++. ++....++.+..|++...+  ..............+.+++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~  214 (355)
T d1nexb2         138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI-VVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERK  214 (355)
T ss_dssp             -CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTE-EEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTT
T ss_pred             ceeccceeccccccceeeeeeeccccccccccccce-eeeecccceeeeeeccccc--ceeeeeccccccccccccccce
Confidence                     00           00112234456664 4445566789999875431  1111111222234567788887


Q ss_pred             EEEEEecCCCccccccccCC-ccceeeecCCccceeeeeeccc------ccCcceEEEEECCC-CCEEEEEEccCCceee
Q 018242          259 FWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVK------LSGNGGMAMRISEQ-GNVLEILEEIGRKMWR  330 (359)
Q Consensus       259 lwv~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~  330 (359)
                      ..+.....+.     +..++ ..++.+..+......+..+.+.      +..+ +.+..+|.+ +.....+..  .. ..
T Consensus       215 ~~~~~~~d~~-----i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~--~~-~~  285 (355)
T d1nexb2         215 RCISASMDTT-----IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD-GSIRGWDANDYSRKFSYHH--TN-LS  285 (355)
T ss_dssp             EEEEEETTSC-----EEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTT-SEEEEEETTTCCEEEEEEC--TT-CC
T ss_pred             eeecccccce-----EEeeeccccccccccccccccccccccccceeeeeecc-cccccccccccceeccccc--CC-ce
Confidence            6665544443     44443 3555555544433333333322      1111 223333322 222222221  11 11


Q ss_pred             ceEEEEEeCCEEEEecCCCCeEEEEcCC
Q 018242          331 SISEVEEKDGNLWIGSVNMPYAGLYNYS  358 (359)
Q Consensus       331 ~~~~~~~~~g~l~ig~~~~~~l~~~~~~  358 (359)
                      .+. ....++++.+++. .+.|.+.++.
T Consensus       286 ~~~-~~~~~~~~l~~g~-d~~i~vwd~~  311 (355)
T d1nexb2         286 AIT-TFYVSDNILVSGS-ENQFNIYNLR  311 (355)
T ss_dssp             CCC-EEEECSSEEEEEE-TTEEEEEETT
T ss_pred             EEE-EEcCCCCEEEEEe-CCEEEEEECC
Confidence            221 2234667777765 5678887765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.44  E-value=2.1e-05  Score=69.58  Aligned_cols=213  Identities=14%  Similarity=0.042  Sum_probs=125.2

Q ss_pred             CCCCCCceEEEcc---CCCeeEEec-CCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           31 EGAIGPESLAFDA---LGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        31 ~~~~~p~~i~~~~---~G~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      +..-+| .+.+..   ||+.+|+.. .+.+|-++|+++-+...+.                  . .+....++|++..++
T Consensus        83 GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi------------------~-iPn~~~~HG~r~~~~  142 (459)
T d1fwxa2          83 GDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL------------------E-IPNAKGIHGLRPQKW  142 (459)
T ss_dssp             CCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE------------------E-CSSCCSEEEEEECCS
T ss_pred             CCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEE------------------e-cCCCCCCceeecccC
Confidence            445566 444443   799888754 6689999999886544332                  1 123345788887765


Q ss_pred             CCeEEEEeC-CC------------------c-EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCc-c
Q 018242          107 NGDLYIADA-YF------------------G-LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQ-F  165 (359)
Q Consensus       107 ~g~l~v~~~-~~------------------~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~-~  165 (359)
                      .+..||... ..                  + +..+|.++.++..-.. ..    ..+.++.++++|+++|++.-.+. .
T Consensus       143 p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-V~----g~ld~~~~s~dGK~af~TsyNSE~g  217 (459)
T d1fwxa2         143 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VS----GNLDNCDADYEGKWAFSTSYNSEKG  217 (459)
T ss_dssp             SBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE-ES----SCCCCEEECSSSSEEEEEESCTTCC
T ss_pred             CCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee-eC----CChhccccCCCCCEEEEEeccccCC
Confidence            566666531 10                  1 3467888776543222 11    25678999999998888742210 0


Q ss_pred             ------ccc--ccee--ee---------eecCCCceEEEEeCCCC---cEEEEeCCCCCCceEEEccCCCEEEEEecCCC
Q 018242          166 ------QRR--NHIS--VI---------LSGDKTGRLMKYDPATK---QVTVLLGNLSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       166 ------~~~--~~~~--~~---------~~~~~~g~v~~~d~~~~---~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                            .+.  ++..  ++         ......+++-.+|....   .+..+......|.|+.++|||+++|+++..+.
T Consensus       218 ~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~  297 (459)
T d1fwxa2         218 MTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSP  297 (459)
T ss_dssp             SSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSS
T ss_pred             cchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCC
Confidence                  000  0000  00         00011234666775431   22223334467999999999999999999999


Q ss_pred             EEEEEEcCC------CCCccee-Eeec--CCCCCCceEECCCCCEEEEEecCCC
Q 018242          224 RILRYWLKT------SKAGTIE-IVAQ--LPGFPDNIKRSPRGGFWVGIHSRRK  268 (359)
Q Consensus       224 ~i~~~~~~~------~~~~~~~-~~~~--~~~~p~~i~~d~~G~lwv~~~~~~~  268 (359)
                      .+.++|+..      .+..... ...+  +.-.|---++|.+|+.|++.+-...
T Consensus       298 tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~  351 (459)
T d1fwxa2         298 TVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQ  351 (459)
T ss_dssp             BEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTE
T ss_pred             cEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccce
Confidence            999999741      1111111 1222  2333555788999999998876554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=6.6e-05  Score=64.77  Aligned_cols=164  Identities=13%  Similarity=0.121  Sum_probs=95.6

Q ss_pred             CceEEEcc--CCCeeEEecCCCEEEEEEcCCcce-EEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEE
Q 018242           36 PESLAFDA--LGEGPYTGVSDGRIIKWHQDQRRW-LHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYI  112 (359)
Q Consensus        36 p~~i~~~~--~G~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v  112 (359)
                      -.++++.|  +|+++..+..++.|..||...++. .......          .   .......+....+++++++..+.+
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~----------~---~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV----------K---SEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE----------E---EEEECCSSCEEEEEECTTSSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc----------c---cccccccCcEEEEEECCCCCccce
Confidence            34788876  577666788899999998754310 0000000          0   011112233467889984444555


Q ss_pred             EeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          113 ADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       113 ~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      +...  ..+..++.++++......   + ....+..+++++++.++.++-                 ...+.+..++..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~~~~~~~~-----------------~~d~~v~~~d~~~  191 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVS---G-HSQRINACHLKQSRPMRSMTV-----------------GDDGSVVFYQGPP  191 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECC---S-CSSCEEEEEECSSSSCEEEEE-----------------ETTTEEEEEETTT
T ss_pred             eeccccceEEEEeecccccceeee---e-cccccccccccccccceEEEe-----------------ecccccccccccc
Confidence            4432  236677777765322211   1 123567789999987444541                 2245788888765


Q ss_pred             CcEEEEeCC----CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          191 KQVTVLLGN----LSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       191 ~~~~~~~~~----~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      .+.......    ......++++||+..++++...++.|..||+...
T Consensus       192 ~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         192 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             cccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc
Confidence            554432222    2234678999986557777778889999997543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=0.00018  Score=60.19  Aligned_cols=188  Identities=11%  Similarity=0.078  Sum_probs=102.5

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      ...++++++++.++......+.+..++....+...                    ...........+.+.+++..+..+.
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~  120 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--------------------TMHGHDHNVSSVSIMPNGDHIVSAS  120 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--------------------CCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             cEEEEeeeccccccccccccccccccccccccccc--------------------ccccccccceeeeccCCCceEEeec
Confidence            34578888998877777777777777766542221                    1112223345677888455555555


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.+..++..+++.......    ....+..++++++++ +.++-                 ...+.|..++..+++..
T Consensus       121 ~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~l~~~-----------------~~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1         121 RDKTIKMWEVQTGYCVKTFTG----HREWVRMVRPNQDGT-LIASC-----------------SNDQTVRVWVVATKECK  178 (317)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC----CSSCEEEEEECTTSS-EEEEE-----------------ETTSCEEEEETTTCCEE
T ss_pred             cCcceeEeecccceeeeEEcc----CCCcceeeecccCCC-EEEEE-----------------eCCCeEEEEeeccceee
Confidence            445577888887765432221    122456788999999 54441                 12345666666554433


Q ss_pred             EEeCC-CCCCceEE--------------------EccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEE
Q 018242          195 VLLGN-LSFPNGVA--------------------LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR  253 (359)
Q Consensus       195 ~~~~~-~~~p~gia--------------------~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~  253 (359)
                      ..... ......++                    ...++. ++.+...++.|..|++...+  ....+.........+++
T Consensus       179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~  255 (317)
T d1vyhc1         179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLF  255 (317)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEE
T ss_pred             EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCc--EEEEEeCCCCCEEEEEE
Confidence            22111 11111222                    223344 45566677899999875432  11222222233456888


Q ss_pred             CCCCCEEEEEecCC
Q 018242          254 SPRGGFWVGIHSRR  267 (359)
Q Consensus       254 d~~G~lwv~~~~~~  267 (359)
                      .++|++.++....+
T Consensus       256 ~~~~~~l~s~~~dg  269 (317)
T d1vyhc1         256 HSGGKFILSCADDK  269 (317)
T ss_dssp             CSSSSCEEEEETTT
T ss_pred             CCCCCEEEEEECCC
Confidence            99998666554444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.10  E-value=5.1e-05  Score=68.99  Aligned_cols=109  Identities=19%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             ccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEeCC---C------CCCceEEEccC
Q 018242          141 FRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLGN---L------SFPNGVALSED  211 (359)
Q Consensus       141 ~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~------~~p~gia~~~d  211 (359)
                      +..|.+|++.|||+ |||++..                 .|.|++++++++..+.+..-   .      ..--+|+++|+
T Consensus        26 L~~P~~la~~pdg~-llVter~-----------------~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQ-IWLTERA-----------------TGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSC-EEEEETT-----------------TCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCe-EEEEEec-----------------CCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            45788999999999 9999532                 46899999888776654321   1      11237999874


Q ss_pred             ---CCEEEEEecC------------CCEEEEEEcCCCCC--cceeEee-cCCC----CCCceEECCCCCEEEEEecCC
Q 018242          212 ---GNYILLAETT------------SCRILRYWLKTSKA--GTIEIVA-QLPG----FPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       212 ---~~~l~v~~~~------------~~~i~~~~~~~~~~--~~~~~~~-~~~~----~p~~i~~d~~G~lwv~~~~~~  267 (359)
                         +.++|++.+.            ...+.++..+....  ...+.+. .++.    .-..|++++||.||++....+
T Consensus        88 f~~n~~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~  165 (450)
T d1crua_          88 FKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG  165 (450)
T ss_dssp             TTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred             CccCCEEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCC
Confidence               5678887541            11344555443322  1122222 2221    123499999999999887544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.03  E-value=0.00078  Score=58.45  Aligned_cols=144  Identities=13%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             CCCceEEE--ccCCC-eeEEe-c--CCCEEE--EEEcCCcceEEEeecCCCCCCCCCCccccccccc-ccCCcceEEEEe
Q 018242           34 IGPESLAF--DALGE-GPYTG-V--SDGRII--KWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKE-HICGRPLGLCFN  104 (359)
Q Consensus        34 ~~p~~i~~--~~~G~-~l~~~-~--~~~~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gi~~~  104 (359)
                      ..|+||.+  +++|+ +|++. .  .+..|-  .++.++.+.++..                  ... +....|..+++.
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~------------------~v~~~~~~~pNDv~~~  158 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK------------------TIRHKLLPSVNDIVAV  158 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE------------------EECCTTCSSEEEEEEE
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEe------------------ecCCccccCccceEEe
Confidence            58999876  55676 24432 2  234444  4444444333332                  111 223458889998


Q ss_pred             cCCCeEEEEeCC------------------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccc
Q 018242          105 KTNGDLYIADAY------------------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ  166 (359)
Q Consensus       105 ~~~g~l~v~~~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~  166 (359)
                      . ++.+|+++..                  ..++.++.  ++.+.+..     ....||+|++++|+++|||+++.    
T Consensus       159 ~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~~~~~~-----~l~~pNGI~~s~d~~~lyVa~t~----  226 (340)
T d1v04a_         159 G-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAE-----GFDFANGINISPDGKYVYIAELL----  226 (340)
T ss_dssp             E-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCEEEEEE-----EESSEEEEEECTTSSEEEEEEGG----
T ss_pred             c-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--CceEEEcC-----CCCccceeEECCCCCEEEEEeCC----
Confidence            8 8899999631                  12455554  34444433     34689999999999999999654    


Q ss_pred             cccceeeeeecCCCceEEEEeCCC-CcEEE--EeCCCCCCceEEEccCCCEEEEEec
Q 018242          167 RRNHISVILSGDKTGRLMKYDPAT-KQVTV--LLGNLSFPNGVALSEDGNYILLAET  220 (359)
Q Consensus       167 ~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~--~~~~~~~p~gia~~~d~~~l~v~~~  220 (359)
                                   .++|.+|+.+. +....  ...-...|..|.+++++..+|++..
T Consensus       227 -------------~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         227 -------------AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             -------------GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             -------------CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence                         34566665542 22222  2222245889999875444777753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=0.00043  Score=57.78  Aligned_cols=183  Identities=10%  Similarity=-0.000  Sum_probs=98.1

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .|..+++.+++. +++...++.+..++..+++....                    +.   ......++.+.+..+.++.
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~~~~~v~~  137 (287)
T d1pgua2          82 QPKVASANNDGF-TAVLTNDDDLLILQSFTGDIIKS--------------------VR---LNSPGSAVSLSQNYVAVGL  137 (287)
T ss_dssp             CEEEEEECSSSE-EEEEETTSEEEEEETTTCCEEEE--------------------EE---CSSCEEEEEECSSEEEEEE
T ss_pred             ceeeeeeccCCc-eEEEeecccceeeeccceeeeee--------------------cc---ccceeeeeeccCcceeeec
Confidence            456666666666 44444445666666655432211                    00   1122345666456666665


Q ss_pred             CCC-cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          115 AYF-GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       115 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..+ .+..++..+.+......   ......+..++++|+|.+|.+++                  ..+.|..||..++..
T Consensus       138 ~~~~~v~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~g~------------------~dg~i~i~d~~~~~~  196 (287)
T d1pgua2         138 EEGNTIQVFKLSDLEVSFDLK---TPLRAKPSYISISPSETYIAAGD------------------VMGKILLYDLQSREV  196 (287)
T ss_dssp             TTTSCEEEEETTEEEEEEECS---SCCSSCEEEEEECTTSSEEEEEE------------------TTSCEEEEETTTTEE
T ss_pred             cccceeeeeeccccceeeeee---eccCCceeEEEeccCcccccccc------------------ccccccceeeccccc
Confidence            544 36677765443222111   11123467899999999555552                  246788899887655


Q ss_pred             EEEe--CCCCCCceEEEccC----------CCEEEEEecCCCEEEEEEcCCCCCcceeEeecCCCCCCceEECCCCCEEE
Q 018242          194 TVLL--GNLSFPNGVALSED----------GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV  261 (359)
Q Consensus       194 ~~~~--~~~~~p~gia~~~d----------~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv  261 (359)
                      ....  .+......++++|+          ++ ++++...++.|+.|++..+.. ....+....+...++++.+++.+..
T Consensus       197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~~-~~~~~~~h~~~V~~v~~~~~~~l~s  274 (287)
T d1pgua2         197 KTSRWAFRTSKINAISWKPAEKGANEEEIEED-LVATGSLDTNIFIYSVKRPMK-IIKALNAHKDGVNNLLWETPSTLVS  274 (287)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCC-EEEEEETTSCEEEEESSCTTC-CEEETTSSTTCEEEEEEEETTEEEE
T ss_pred             ccccccccccccceeeecccccccccccCCCC-eeEeecCCCeEEEEECCCCCe-EEEEeCCCCCCeEEEEECCCCEEEE
Confidence            4321  22233456666553          33 566777888999999754321 1111111122345677777776554


Q ss_pred             EEe
Q 018242          262 GIH  264 (359)
Q Consensus       262 ~~~  264 (359)
                      +..
T Consensus       275 ~g~  277 (287)
T d1pgua2         275 SGA  277 (287)
T ss_dssp             EET
T ss_pred             EEC
Confidence            444

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=0.0019  Score=56.65  Aligned_cols=119  Identities=8%  Similarity=-0.000  Sum_probs=74.0

Q ss_pred             ceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCC--ccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           98 PLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEG--IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        98 p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...+++++ ++.+..+...+.|..+|..+++..........  .....++.++++|+|+ +.++-..             
T Consensus       187 ~~~v~~s~-dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~-------------  251 (393)
T d1sq9a_         187 ATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHD-------------  251 (393)
T ss_dssp             CCEEEECT-TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEE-------------
T ss_pred             EEEEEECC-CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeecC-------------
Confidence            45788888 77665555444588899988764322221111  1123578899999999 4444110             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeC--------------CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLG--------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~--------------~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                       ....+.|..||.++++......              +......++|+||++ ++++...++.|..||++..
T Consensus       252 -D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         252 -SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred             -CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCC
Confidence             0112346678887765443221              122346799999998 5677778899999998654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.01  Score=49.33  Aligned_cols=76  Identities=12%  Similarity=-0.028  Sum_probs=49.0

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE-
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA-  113 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~-  113 (359)
                      -.+|+++|+|++|.++..++.|..||..+.. ...+.                  ...........++|.++++.++++ 
T Consensus        14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~------------------~~~~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL------------------QSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE------------------EEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE------------------EecCCCCCEEEEEEeCCCCCEEEEc
Confidence            3689999999988899999999999976542 11111                  111122345788888855655444 


Q ss_pred             eCCCcEEEEeCCCCeE
Q 018242          114 DAYFGLLKVGPEGGLA  129 (359)
Q Consensus       114 ~~~~~i~~~~~~~~~~  129 (359)
                      ...+.+..++...+..
T Consensus        76 ~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPS   91 (342)
T ss_dssp             ETTSCEEEECSSSSSS
T ss_pred             ccccceeeeecccccc
Confidence            4444577777765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=0.0005  Score=60.61  Aligned_cols=145  Identities=18%  Similarity=0.144  Sum_probs=87.7

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ...++++.++|. +.++..++.|..||..+++.. .+....               .+.........++|+| +++++++
T Consensus       186 ~~~~v~~s~dg~-lasgs~Dg~i~iwd~~~~~~~~~~~~~~---------------~l~~h~~~V~~l~~sp-dg~~l~s  248 (393)
T d1sq9a_         186 FATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQH---------------SMINNSNSIRSVKFSP-QGSLLAI  248 (393)
T ss_dssp             CCCEEEECTTSE-EEEECTTSEEEEEETTTTEEEEEEECCC------------------CCCCCEEEEEECS-STTEEEE
T ss_pred             cEEEEEECCCCE-EEEEeCCCcEEEEeeccccccccccccc---------------ccccccceEEEccccc-ccceeee
Confidence            355799999985 888999999999999876422 221000               1112223467899999 5555554


Q ss_pred             eC-CC--c-EEEEeCCCCeEEEEeecC-CC--------ccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCC
Q 018242          114 DA-YF--G-LLKVGPEGGLATAVATQS-EG--------IPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKT  180 (359)
Q Consensus       114 ~~-~~--~-i~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~  180 (359)
                      .. .+  + |..+|.++++........ ..        .....+..++++|+|+ +.++-                 +..
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~-----------------s~D  310 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSA-----------------GWD  310 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEE-----------------ETT
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEE-----------------CCC
Confidence            32 22  2 666788877643322110 00        0123578899999999 55552                 346


Q ss_pred             ceEEEEeCCCCcEEEEeC-CC----CCCceEEEccCCCE
Q 018242          181 GRLMKYDPATKQVTVLLG-NL----SFPNGVALSEDGNY  214 (359)
Q Consensus       181 g~v~~~d~~~~~~~~~~~-~~----~~p~gia~~~d~~~  214 (359)
                      +.|..||.++++...... +.    .....+++++++..
T Consensus       311 ~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             CEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCE
Confidence            789999998887654432 21    12346778888764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.013  Score=48.80  Aligned_cols=69  Identities=13%  Similarity=0.098  Sum_probs=44.4

Q ss_pred             EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcE
Q 018242           40 AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGL  119 (359)
Q Consensus        40 ~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i  119 (359)
                      +++++|++++++..++.|..||..+++...                    .+.........+.+++  +.++.+...+.+
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--------------------~~~~h~~~V~~v~~~~--~~l~s~s~D~~~   79 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------------TLVGHTGGVWSSQMRD--NIIISGSTDRTL   79 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEE--------------------ECCCCSSCEEEEEEET--TEEEEEETTSCE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEE--------------------EEeCCCCCEEEEEeCC--Cccccceecccc
Confidence            466678888889999999999998875332                    2222234456777775  355555544456


Q ss_pred             EEEeCCCCeEE
Q 018242          120 LKVGPEGGLAT  130 (359)
Q Consensus       120 ~~~~~~~~~~~  130 (359)
                      ..++.......
T Consensus        80 ~~~~~~~~~~~   90 (342)
T d2ovrb2          80 KVWNAETGECI   90 (342)
T ss_dssp             EEEETTTTEEE
T ss_pred             cccccccccce
Confidence            66777665543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=0.012  Score=48.41  Aligned_cols=111  Identities=15%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeee
Q 018242           97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      .|..+.+.+ ++.+++.....++..++..+++.......       .....++.++++.+.++...              
T Consensus        82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~--------------  139 (287)
T d1pgua2          82 QPKVASANN-DGFTAVLTNDDDLLILQSFTGDIIKSVRL-------NSPGSAVSLSQNYVAVGLEE--------------  139 (287)
T ss_dssp             CEEEEEECS-SSEEEEEETTSEEEEEETTTCCEEEEEEC-------SSCEEEEEECSSEEEEEETT--------------
T ss_pred             ceeeeeecc-CCceEEEeecccceeeeccceeeeeeccc-------cceeeeeeccCcceeeeccc--------------
Confidence            455666776 77777776666788888777664332221       11234566677745555221              


Q ss_pred             cCCCceEEEEeCCCCcEEEEe-C-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          177 GDKTGRLMKYDPATKQVTVLL-G-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~-~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                         .+.+..++..+....... . .......++++|+++++++. ..++.|..|++...
T Consensus       140 ---~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~  194 (287)
T d1pgua2         140 ---GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG-DVMGKILLYDLQSR  194 (287)
T ss_dssp             ---TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT
T ss_pred             ---cceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc-cccccccceeeccc
Confidence               224666665433322221 1 12235688999999865555 56678999997643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.006  Score=51.02  Aligned_cols=154  Identities=11%  Similarity=0.048  Sum_probs=88.3

Q ss_pred             CCceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEe
Q 018242           35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIAD  114 (359)
Q Consensus        35 ~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~  114 (359)
                      .........+|..++++..++.|..||....+....                    ..........+.++  ++.++.+.
T Consensus       177 ~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~--------------------~~~~~~~v~~~~~~--~~~l~s~s  234 (342)
T d2ovrb2         177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT--------------------LTGHQSLTSGMELK--DNILVSGN  234 (342)
T ss_dssp             SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEE--------------------ECCCCSCEEEEEEE--TTEEEEEE
T ss_pred             ccccccccCCCCEEEEEeCCCeEEEeecccceeeeE--------------------ecccccceeEEecC--CCEEEEEc
Confidence            344566667888788888899999999887643221                    11111223344444  45565556


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEE
Q 018242          115 AYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVT  194 (359)
Q Consensus       115 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  194 (359)
                      ..+.|..++....+......... .....+  ..+..+++ ++++-                 +..|.|..||.++++..
T Consensus       235 ~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~s~-----------------s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         235 ADSTVKIWDIKTGQCLQTLQGPN-KHQSAV--TCLQFNKN-FVITS-----------------SDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECSTT-SCSSCE--EEEEECSS-EEEEE-----------------ETTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEecccccccccccccc-eeeece--eecccCCC-eeEEE-----------------cCCCEEEEEECCCCCEE
Confidence            55568889988766443222111 111222  33444566 44441                 23578999998877654


Q ss_pred             E-EeC-----CCCCCceEEEccCCCEEEEEecCCC----EEEEEEcCC
Q 018242          195 V-LLG-----NLSFPNGVALSEDGNYILLAETTSC----RILRYWLKT  232 (359)
Q Consensus       195 ~-~~~-----~~~~p~gia~~~d~~~l~v~~~~~~----~i~~~~~~~  232 (359)
                      . +..     .......++++|++. ++++...++    .|+.||.+.
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~~-~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEecccCCCCCCCEEEEEECCCCC-EEEEEeCCCCCeeEEEEEeCCC
Confidence            3 221     112246789999875 455554444    588888753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=0.017  Score=48.27  Aligned_cols=212  Identities=8%  Similarity=-0.079  Sum_probs=104.7

Q ss_pred             EEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCC-CCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCC
Q 018242           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRD-GCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYF  117 (359)
Q Consensus        39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~  117 (359)
                      ....++++.+.++..++.|..||..+.............. ....+.+..............-....+++..+..+....
T Consensus       102 ~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~  181 (355)
T d1nexb2         102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN  181 (355)
T ss_dssp             EEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTS
T ss_pred             cccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccc
Confidence            3455677767778888999999987642211100000000 000000000000000000001122334233444445445


Q ss_pred             cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          118 GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       118 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      .+..++..+++.......    .......+.+++++++++.+                  ...+.|..++..++......
T Consensus       182 ~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------------~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSG----HTDRIYSTIYDHERKRCISA------------------SMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CEEEEETTTTEEEEEECC----CSSCEEEEEEETTTTEEEEE------------------ETTSCEEEEETTTCCEEEEE
T ss_pred             eeeeeecccccceeeeec----cccccccccccccceeeecc------------------cccceEEeeecccccccccc
Confidence            688888887764332211    12345577889999844444                  22457888888877655433


Q ss_pred             C-CCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEee-cCCCCCCceEECCCCCEEEEEecCCCccccccc
Q 018242          198 G-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVL  275 (359)
Q Consensus       198 ~-~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~lwv~~~~~~~~~~~~~~  275 (359)
                      . .......++++  ++ .+++...++.|..||+....    +.+. .......-.++.+++++.++..++.      +.
T Consensus       240 ~~h~~~v~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~------i~  306 (355)
T d1nexb2         240 QGHTALVGLLRLS--DK-FLVSAAADGSIRGWDANDYS----RKFSYHHTNLSAITTFYVSDNILVSGSENQ------FN  306 (355)
T ss_dssp             CCCSSCCCEEEEC--SS-EEEEECTTSEEEEEETTTCC----EEEEEECTTCCCCCEEEECSSEEEEEETTE------EE
T ss_pred             ccccccccccccc--cc-eeeeeecccccccccccccc----eecccccCCceEEEEEcCCCCEEEEEeCCE------EE
Confidence            2 23334666665  44 45666778899999975431    1121 1112112234566778877765432      55


Q ss_pred             cCC-ccceeee
Q 018242          276 SFP-WIGNVLI  285 (359)
Q Consensus       276 ~~~-~~g~~~~  285 (359)
                      +++ ++|+.+.
T Consensus       307 vwd~~tg~~~~  317 (355)
T d1nexb2         307 IYNLRSGKLVH  317 (355)
T ss_dssp             EEETTTCCBCC
T ss_pred             EEECCCCCEEE
Confidence            555 4566654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=0.0011  Score=59.88  Aligned_cols=145  Identities=8%  Similarity=-0.052  Sum_probs=85.7

Q ss_pred             CceEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        36 p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      +..+.+.+++.++|.  .++.++++|..+++-+.+....               .+.........+.|+|+...|.++..
T Consensus        19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~---------------~~~~~~~~i~~~~~SpDg~~i~~~~~   81 (470)
T d2bgra1          19 LYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS---------------TFDEFGHSINDYSISPDGQFILLEYN   81 (470)
T ss_dssp             CCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT---------------TTTTSSSCCCEEEECTTSSEEEEEEE
T ss_pred             ccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh---------------hhhhccCccceeEECCCCCEEEEEEC
Confidence            346777889984443  4567999999988654432111               22222233567889995555555421


Q ss_pred             ---------CCcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEE
Q 018242          116 ---------YFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKY  186 (359)
Q Consensus       116 ---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  186 (359)
                               ...++.+|.++++...+...     ........++|||+++.+..                   ...++.+
T Consensus        82 ~~~~~r~s~~~~~~l~d~~~~~~~~l~~~-----~~~~~~~~~SPDG~~ia~~~-------------------~~~l~~~  137 (470)
T d2bgra1          82 YVKQWRHSYTASYDIYDLNKRQLITEERI-----PNNTQWVTWSPVGHKLAYVW-------------------NNDIYVK  137 (470)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSSCC-----CTTEEEEEECSSTTCEEEEE-------------------TTEEEEE
T ss_pred             CcceeeeccCceEEEEECCCCcccccccC-----CccccccccccCcceeeEee-------------------cccceEE
Confidence                     11367889998876443221     12345678999999544431                   2357777


Q ss_pred             eCCCCcEEEEeCC-------------------CCCCceEEEccCCCEEEEEecC
Q 018242          187 DPATKQVTVLLGN-------------------LSFPNGVALSEDGNYILLAETT  221 (359)
Q Consensus       187 d~~~~~~~~~~~~-------------------~~~p~gia~~~d~~~l~v~~~~  221 (359)
                      +..++....+...                   .....++.++|||+.+......
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            7766654432211                   1123578899999987666443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.29  E-value=0.0037  Score=54.97  Aligned_cols=157  Identities=8%  Similarity=-0.017  Sum_probs=90.6

Q ss_pred             CCeEEEEeCC-CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccc-cc-c-ceeeeeecCCCce
Q 018242          107 NGDLYIADAY-FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQ-RR-N-HISVILSGDKTGR  182 (359)
Q Consensus       107 ~g~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~-~~-~-~~~~~~~~~~~g~  182 (359)
                      +..|||.+.. .+|.|+|.++-+...+... +  -...++++...+++++.||...+..-. .. + ...+- .....+.
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~i-P--n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d-~~~y~~~  174 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEI-P--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED-VANYVNV  174 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEEC-S--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC-GG-EEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEec-C--CCCCCceeecccCCCeEEEEccCccccccCCCCccccc-hhhcceE
Confidence            4558888764 4699999998887655442 2  123567888877777678874322100 00 0 00000 0012234


Q ss_pred             EEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCC--------------EEEEEEcC-----------------
Q 018242          183 LMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--------------RILRYWLK-----------------  231 (359)
Q Consensus       183 v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~--------------~i~~~~~~-----------------  231 (359)
                      +..+|.++.++.....-...+..+++++||+++|++...+.              .+..+++.                 
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            66899988776654333346789999999999999864432              33334421                 


Q ss_pred             ------CCCCcceeEeecCCCCCCceEECCCCCEEEEEecCC
Q 018242          232 ------TSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR  267 (359)
Q Consensus       232 ------~~~~~~~~~~~~~~~~p~~i~~d~~G~lwv~~~~~~  267 (359)
                            .........+...+..|+|+.+++||+..+++..-.
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs  296 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS  296 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTS
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcC
Confidence                  000001111233355699999999998666555433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.22  E-value=0.031  Score=48.03  Aligned_cols=66  Identities=12%  Similarity=0.163  Sum_probs=40.8

Q ss_pred             CCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCcceeEeec-----CCCCCCceEE----CCCCCEEEEEecC
Q 018242          200 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-----LPGFPDNIKR----SPRGGFWVGIHSR  266 (359)
Q Consensus       200 ~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~p~~i~~----d~~G~lwv~~~~~  266 (359)
                      ...++|++++.+.++||+++.. .++|+|+.+............     +.+=|.||++    +.+|.|.+++.+.
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETT-TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CCccceEEEeCCCCcEEEecCc-cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            3567899999998999999864 689999987543332232221     2233667765    2244344444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.17  E-value=0.042  Score=44.65  Aligned_cols=100  Identities=13%  Similarity=-0.005  Sum_probs=60.0

Q ss_pred             EEccC--CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC-C
Q 018242           40 AFDAL--GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA-Y  116 (359)
Q Consensus        40 ~~~~~--G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~-~  116 (359)
                      .++||  |+.+... ..+.|+.+|.++++.+.+.                     ...+...+.+++|++..|..... .
T Consensus         5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt---------------------~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIV---------------------SNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEE-ETTEEEEEETTTCCEEEEE---------------------CSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEe---------------------cCCCcccCEEECCCCCEEEEEEeeC
Confidence            34566  7744433 3357999999987655442                     22233456789995555554421 1


Q ss_pred             -----CcEEEEeCCCCeEEEEeecCCC--ccccccceEEEeCCCCEEEEEeC
Q 018242          117 -----FGLLKVGPEGGLATAVATQSEG--IPFRFCNSLDIDQSTGIIYFTDS  161 (359)
Q Consensus       117 -----~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~d~~g~~l~v~d~  161 (359)
                           ..|++++..+++.+.+......  ..........++|+|+.|+++..
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence                 1388999999987665321110  11224456789999997777744

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.063  Score=43.43  Aligned_cols=182  Identities=13%  Similarity=0.086  Sum_probs=88.9

Q ss_pred             ceEEEccCCCeeEE-ecCC--CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEE
Q 018242           37 ESLAFDALGEGPYT-GVSD--GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIA  113 (359)
Q Consensus        37 ~~i~~~~~G~~l~~-~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~  113 (359)
                      ...+++|||+.+.. ....  ..++..+..+...+...                     ..........+++++..++..
T Consensus        42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---------------------SFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE---------------------CCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe---------------------eeecccccceecCCCCeeeEe
Confidence            36789999986644 3332  36777777766443322                     122334456778844444443


Q ss_pred             eCCCc---EEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCC
Q 018242          114 DAYFG---LLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPAT  190 (359)
Q Consensus       114 ~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  190 (359)
                      ....+   +...............   .  ..........++++.++++...               .....++..+.++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~---------------~g~~~i~~~~~~~  160 (269)
T d2hqsa1         101 LSKTGSLNLYVMDLASGQIRQVTD---G--RSNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNING  160 (269)
T ss_dssp             ECTTSSCEEEEEETTTCCEEECCC---C--SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTS
T ss_pred             eecCCccceeecccccccceeeee---c--cccccccccccccccceecccc---------------cCCceEeeeeccc
Confidence            32221   3333333332222111   0  0111123455555534444211               1123588888877


Q ss_pred             CcEEEEeCCCCCCceEEEccCCCEEEEEecCCCE--EEEEEcCCCCCcceeEeecCCCCCCceEECCCCC-EEEEE
Q 018242          191 KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCR--ILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGI  263 (359)
Q Consensus       191 ~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-lwv~~  263 (359)
                      +................++||++.++......+.  ++.++....   ..+.. ...+.-....+++||+ |...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~-~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVL-SSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEEC-CCSSSCEEEEECTTSSEEEEEE
T ss_pred             ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccc---cceEe-ecCccccceEECCCCCEEEEEE
Confidence            6555443333333456789999987776655543  444443221   22222 1122223468899997 43333

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.89  E-value=0.0079  Score=53.89  Aligned_cols=121  Identities=13%  Similarity=0.002  Sum_probs=75.6

Q ss_pred             EEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEEeecCC-CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecC
Q 018242          100 GLCFNKTNGDLYIADAYFGLLKVGPEGGLATAVATQSE-GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGD  178 (359)
Q Consensus       100 gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~  178 (359)
                      .+.+.+ ++.++..+ .+.++.+|+.+++.+.+..... ......+.++.++|||++|.++.....         +...+
T Consensus        21 ~~~W~~-d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~---------~~r~s   89 (470)
T d2bgra1          21 SLRWIS-DHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK---------QWRHS   89 (470)
T ss_dssp             CCEECS-SSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE---------CSSSC
T ss_pred             CCEeCC-CCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc---------eeeec
Confidence            344556 66655443 5579999999998765543211 111235678899999997666521100         00112


Q ss_pred             CCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCC
Q 018242          179 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS  233 (359)
Q Consensus       179 ~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~  233 (359)
                      ..+.++.+|.++++...+...........++|||+.+.+.  .++.++.++..+.
T Consensus        90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g  142 (470)
T d2bgra1          90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTS
T ss_pred             cCceEEEEECCCCcccccccCCccccccccccCcceeeEe--ecccceEEECCCC
Confidence            3467899999988766544433445678899999976664  3467888876544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.45  E-value=0.22  Score=42.49  Aligned_cols=140  Identities=17%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             CeEEEE-eCCCcEEEEeCCCCeEEEEeecCCCccccccceEEEe------CCCC-EEEEEeCCCccccccceeeeeecCC
Q 018242          108 GDLYIA-DAYFGLLKVGPEGGLATAVATQSEGIPFRFCNSLDID------QSTG-IIYFTDSSSQFQRRNHISVILSGDK  179 (359)
Q Consensus       108 g~l~v~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d------~~g~-~l~v~d~~~~~~~~~~~~~~~~~~~  179 (359)
                      ..|.++ +...||+.||+++.+++.+.       ...+|.+.+-      .++. .+++++...             +..
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~G~~l~~~~-------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~-------------~~~   99 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLEGKMLHSYH-------TGKLNNVDIRYDFPLNGKKVDIAAASNRSE-------------GKN   99 (353)
T ss_dssp             GCEEEEEETTSCCEEEETTCCEEEECC-------SSCEEEEEEEEEEEETTEEEEEEEEEECCT-------------TTC
T ss_pred             ccEEEEEcCcCCEEEEcCCCcEEEecc-------cCCcCccccccccccCCcceEEEEEeCCcC-------------cce
Confidence            445555 55568999999877765431       1233443322      1221 123332210             011


Q ss_pred             CceEEEEeCCCCcEEEEeC-------CCCCCceEEE--ccC-CCEEEEEecCCCEEEEEEcCCCCCc--ceeEee--cCC
Q 018242          180 TGRLMKYDPATKQVTVLLG-------NLSFPNGVAL--SED-GNYILLAETTSCRILRYWLKTSKAG--TIEIVA--QLP  245 (359)
Q Consensus       180 ~g~v~~~d~~~~~~~~~~~-------~~~~p~gia~--~~d-~~~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~--~~~  245 (359)
                      .-.++.+++..+.+..+..       ....+.|+|+  ++. +....+.....+.+..|.+......  ..+...  .++
T Consensus       100 ~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~  179 (353)
T d1h6la_         100 TIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN  179 (353)
T ss_dssp             EEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS
T ss_pred             eEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC
Confidence            2347778877665554321       2335789999  444 4432333345678888877432222  122222  245


Q ss_pred             CCCCceEECCC-CCEEEEEecCC
Q 018242          246 GFPDNIKRSPR-GGFWVGIHSRR  267 (359)
Q Consensus       246 ~~p~~i~~d~~-G~lwv~~~~~~  267 (359)
                      ..+.|+++|.+ +.||++.-..+
T Consensus       180 ~q~EGCVvDde~~~LyisEE~~G  202 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEEDEA  202 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTE
T ss_pred             CccceEEEeCCCCcEEEecCccc
Confidence            56788999875 67999976543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.14  E-value=0.23  Score=45.45  Aligned_cols=124  Identities=12%  Similarity=0.068  Sum_probs=68.0

Q ss_pred             CCCeeEEecC-CCEEEEEEc-CCcceEE-EeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEE
Q 018242           44 LGEGPYTGVS-DGRIIKWHQ-DQRRWLH-FARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLL  120 (359)
Q Consensus        44 ~G~~l~~~~~-~~~i~~~d~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~  120 (359)
                      +|. +|+++. .+.|+.+|. ++++... +. +. .      +...+  .........+|+++.  ++++|+++..+.|+
T Consensus        62 ~g~-vyv~t~~~~~v~Alda~~tG~~~W~~~-~~-~------~~~~~--~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~  128 (571)
T d2ad6a1          62 GDM-MYVHSAFPNNTYALNLNDPGKIVWQHK-PK-Q------DASTK--AVMCCDVVDRGLAYG--AGQIVKKQANGHLL  128 (571)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEEEC-CC-C------CGGGG--GGCTTCSCCCCCEEE--TTEEEEECTTSEEE
T ss_pred             CCE-EEEecCCCCeEEEEeCCCCCceEEEec-CC-C------Ccccc--cccccCcCCCcceee--CCeEEEEeCCCcEE
Confidence            566 787765 578999997 5565332 31 10 0      00000  000011123466766  68999988777799


Q ss_pred             EEeCCCCeEEEEeecCC---CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          121 KVGPEGGLATAVATQSE---GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       121 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      .+|.++|+.........   ......+ .++.  ++. +++..+...            ....|.|..+|..||+....
T Consensus       129 alda~tG~~~w~~~~~~~~~~~~~t~~-p~v~--~~~-vivg~~~~~------------~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         129 ALDAKTGKINWEVEVCDPKVGSTLTQA-PFVA--KDT-VLMGCSGAE------------LGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             EEETTTCCEEEEEECCCGGGTCBCCSC-CEEE--TTE-EEEECBCGG------------GTCCCEEEEEETTTCCEEEE
T ss_pred             eeehhhhhhhccccccccccccceeec-CeEe--CCe-EEEeecccc------------ccccCcEEEEECCCCcEEEE
Confidence            99999998643222111   1111111 1222  355 888754321            12356788999988887764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.26  Score=39.23  Aligned_cols=73  Identities=11%  Similarity=0.108  Sum_probs=45.8

Q ss_pred             ceE-EEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESL-AFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i-~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .+| +++++|++++++..++.|..||.++++...                    .+.........+.++  +..|+.+..
T Consensus        16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~--------------------~l~~H~~~V~~v~~~--~~~l~s~s~   73 (293)
T d1p22a2          16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--------------------ILTGHTGSVLCLQYD--ERVIITGSS   73 (293)
T ss_dssp             CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE--------------------EECCCSSCEEEEECC--SSEEEEEET
T ss_pred             CCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEE--------------------EEecCCCCEeeeecc--cceeecccc
Confidence            344 466789988899999999999998764332                    122222334455443  444555555


Q ss_pred             CCcEEEEeCCCCeEEE
Q 018242          116 YFGLLKVGPEGGLATA  131 (359)
Q Consensus       116 ~~~i~~~~~~~~~~~~  131 (359)
                      .+.+..++...+....
T Consensus        74 D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             TSCEEEEESSSCCEEE
T ss_pred             cccccccccccccccc
Confidence            5558888888776543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.84  E-value=0.33  Score=38.91  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          117 FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +.|++++.++++.+.+... .    ......+++|||++|.++.....            ......|+.++..+++.+.+
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~-~----~~~~~p~~SPDG~~iaf~~~~~~------------~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSN-L----GVINNARFFPDGRKIAIRVMRGS------------SLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             TEEEEEETTTCCEEEEECS-S----SEEEEEEECTTSSEEEEEEEEST------------TCCEEEEEEEETTTTEEEEC
T ss_pred             CcEEEEECCCCCEEEEecC-C----CcccCEEECCCCCEEEEEEeeCC------------CCCceEEEEEEecCCceEEe
Confidence            3577777777777665321 1    13346789999997766521100            01224589999988877665


Q ss_pred             eCC-------CCCCceEEEccCCCEEEEEecC
Q 018242          197 LGN-------LSFPNGVALSEDGNYILLAETT  221 (359)
Q Consensus       197 ~~~-------~~~p~gia~~~d~~~l~v~~~~  221 (359)
                      ...       .......+++||++.++++...
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  115 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM  115 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEcc
Confidence            321       1234567899999988876544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.73  E-value=0.71  Score=42.02  Aligned_cols=45  Identities=16%  Similarity=0.144  Sum_probs=27.6

Q ss_pred             cccccCcceEEEEECC-CCCEEEEEEccCCceeeceEEEEEeCCEEEEe
Q 018242          298 LVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLWIG  345 (359)
Q Consensus       298 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~ig  345 (359)
                      +|.+..+ +.+.+||. +|+++..+..+.+.. ..+... ..+|+.||+
T Consensus       478 Vf~G~~d-g~l~A~Da~tGe~lW~~~l~~~~~-a~P~ty-~~dGkqYi~  523 (571)
T d2ad6a1         478 VWYATLD-GYLKALDNKDGKELWNFKMPSGGI-GSPMTY-SFKGKQYIG  523 (571)
T ss_dssp             EEEECTT-SEEEEEETTTCCEEEEEECSSCCC-SCCEEE-EETTEEEEE
T ss_pred             EEEECCC-CeEEEEECCCCcEEEEEECCCCce-ecceEE-EECCEEEEE
Confidence            3334445 68899985 588998887544432 223222 348899984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.43  Score=38.71  Aligned_cols=117  Identities=11%  Similarity=-0.071  Sum_probs=63.0

Q ss_pred             CcceEEEEecCCCeEEEEeCCCcEEEEeCCCCe-EEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeee
Q 018242           96 GRPLGLCFNKTNGDLYIADAYFGLLKVGPEGGL-ATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVI  174 (359)
Q Consensus        96 ~~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~  174 (359)
                      .....|+|+|++..|..+...+.|..+|.+++. ...+.....  ....+..+++.+++..+.++               
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~--h~~~V~~v~f~~~~~~~l~s---------------   74 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYV---------------   74 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEE---------------
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC--CCCCEEEEEEeCCCCCEEEE---------------
Confidence            346789999954555555544457777764432 111111110  11246678888776524333               


Q ss_pred             eecCCCceEEEEeCCCCcEEEEeCCC-CCCc-eEEEccCCCEEEEEecCCCEEEEEEcCC
Q 018242          175 LSGDKTGRLMKYDPATKQVTVLLGNL-SFPN-GVALSEDGNYILLAETTSCRILRYWLKT  232 (359)
Q Consensus       175 ~~~~~~g~v~~~d~~~~~~~~~~~~~-~~p~-gia~~~d~~~l~v~~~~~~~i~~~~~~~  232 (359)
                        ++..+.|..++...+......... .... .....++.. .+++...++.+..|++..
T Consensus        75 --g~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          75 --GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             --EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHH
T ss_pred             --cccccceeeeecccccccccccccccccccccccccccc-cccccccccccceeeccc
Confidence              123567888887765444332221 1222 233334444 566666778999998753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.054  Score=48.49  Aligned_cols=146  Identities=10%  Similarity=-0.006  Sum_probs=77.5

Q ss_pred             EEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC--
Q 018242           39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY--  116 (359)
Q Consensus        39 i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~--  116 (359)
                      ..+.+++.++| ...++.|+.+|..+++.+.+....               .+..  ..+....++++...+++....  
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~---------------~~~~--~~~~~~~~SpD~~~vl~~~~~~~   83 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGK---------------KIES--LRAIRYEISPDREYALFSYNVEP   83 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTT---------------TTTT--TTCSEEEECTTSSEEEEEESCCC
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCc---------------cccc--cccceeEECCCCCeEEEEEcccc
Confidence            34667777444 444578999999877544332110               1111  123456688855566665321  


Q ss_pred             -------CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCC
Q 018242          117 -------FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPA  189 (359)
Q Consensus       117 -------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  189 (359)
                             ..++.+|..++..+.+.....  ....+....++|||+++.+.-                   .+.|+..+..
T Consensus        84 ~~r~s~~~~~~i~d~~~~~~~~l~~~~~--~~~~l~~~~wSPDG~~iafv~-------------------~~nl~~~~~~  142 (465)
T d1xfda1          84 IYQHSYTGYYVLSKIPHGDPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHV  142 (465)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEECCCTTC--CSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSS
T ss_pred             eeEeeccccEEEEEccCCceeeccCccC--CccccceeeeccCCceEEEEe-------------------cceEEEEecC
Confidence                   236778888887665532111  112333457788888553331                   2245555544


Q ss_pred             CCcEEEEeC-C------------------CCCCceEEEccCCCEEEEEecCCC
Q 018242          190 TKQVTVLLG-N------------------LSFPNGVALSEDGNYILLAETTSC  223 (359)
Q Consensus       190 ~~~~~~~~~-~------------------~~~p~gia~~~d~~~l~v~~~~~~  223 (359)
                      ++....+.. +                  .....++.++|||+.|.+...+..
T Consensus       143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s  195 (465)
T d1xfda1         143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS  195 (465)
T ss_dssp             SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred             CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccc
Confidence            433222211 1                  012357889999998777654433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.35  E-value=0.23  Score=45.31  Aligned_cols=127  Identities=13%  Similarity=0.063  Sum_probs=68.5

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcceEEEEecCCCeEEEEeCCCcEEEE
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRPLGLCFNKTNGDLYIADAYFGLLKV  122 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~g~l~v~~~~~~i~~~  122 (359)
                      +|. +|+++.++.|+.+|.++++...--.+ .....   +      ..... .....+++..  ++.+|+++....|+.+
T Consensus        66 ~g~-vyv~t~~~~v~AlDa~tG~~lW~~~~-~~~~~---~------~~~~~~~~~~~~~~~~--~~~v~~~~~~g~l~Al  132 (560)
T d1kv9a2          66 DGV-IYTSMSWSRVIAVDAASGKELWRYDP-EVAKV---K------ARTSCCDAVNRGVALW--GDKVYVGTLDGRLIAL  132 (560)
T ss_dssp             TTE-EEEEEGGGEEEEEETTTCCEEEEECC-CCCGG---G------GGGCTTCSCCCCCEEE--BTEEEEECTTSEEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCEEEEECC-CCCcc---c------cccccccccccCccee--CCeEEEEeCCCEEEEE
Confidence            566 88888889999999998864432111 00000   0      00000 0112344444  5788888777779999


Q ss_pred             eCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          123 GPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      |.++|+..................--.-.++. +++......            ....|.|..+|..||+....
T Consensus       133 da~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~-vivg~~~~~------------~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         133 DAKTGKAIWSQQTTDPAKPYSITGAPRVVKGK-VIIGNGGAE------------YGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             ETTTCCEEEEEECSCTTSSCBCCSCCEEETTE-EEECCBCTT------------TCCBCEEEEEETTTCCEEEE
T ss_pred             ECCCCcEEeccCccCcccceeeeeeeeeecCc-cccccccee------------ccccceEEEEECCCceEEee
Confidence            99998764322211111111111111112455 777643321            12346799999999988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.58  Score=37.24  Aligned_cols=114  Identities=12%  Similarity=0.084  Sum_probs=60.0

Q ss_pred             eEEEEecCCCeEEEEeCCC---cEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeee
Q 018242           99 LGLCFNKTNGDLYIADAYF---GLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVIL  175 (359)
Q Consensus        99 ~gi~~~~~~g~l~v~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~  175 (359)
                      ...+++|++..|.+.....   .++.++..++..+.+....     .......++|+|+.+.+....             
T Consensus        42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~i~~~~~~-------------  103 (269)
T d2hqsa1          42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----RHNGAPAFSPDGSKLAFALSK-------------  103 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCS-----SCEEEEEECTTSSEEEEEECT-------------
T ss_pred             eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeee-----cccccceecCCCCeeeEeeec-------------
Confidence            3457999666666554332   4888888887765543311     233456889999955544211             


Q ss_pred             ecCCCceEEEEeCCCCcEEEEeCCCCCCceEEEccCCCEEEEEecCC--CEEEEEEcCC
Q 018242          176 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKT  232 (359)
Q Consensus       176 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d~~~l~v~~~~~--~~i~~~~~~~  232 (359)
                        .....+........................++++++.+++.....  ..|+.++++.
T Consensus       104 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1         104 --TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             --TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             --CCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccc
Confidence              111123333333233333222222233445566777666665443  3677777654

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=94.63  E-value=1.2  Score=38.42  Aligned_cols=164  Identities=12%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             CCCCCCceEEEccC-CCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC-C
Q 018242           31 EGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN-G  108 (359)
Q Consensus        31 ~~~~~p~~i~~~~~-G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~-g  108 (359)
                      +..-.-.+|+++|. ..++|+++..++|++-+-.+..|+.+....        +      ...........|++||.+ +
T Consensus         9 ~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~--------~------~~~~~~~~~~~iavdp~np~   74 (427)
T d2ebsa1           9 GGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFI--------E------AQDMNIMGTESIALDPNNPD   74 (427)
T ss_dssp             CBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTC--------C------GGGGGGCSEEEEEEETTEEE
T ss_pred             CCCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCC--------C------CCCcccccEeEEEECCCCCC
Confidence            33445668999885 456889888788998876555566542100        0      000111224578899854 5


Q ss_pred             eEEEEeCC------CcEEEEeCCCCe-EEEEeecCC----CccccccceEEEeCC-CCEEEEEeCCCccccccceeeeee
Q 018242          109 DLYIADAY------FGLLKVGPEGGL-ATAVATQSE----GIPFRFCNSLDIDQS-TGIIYFTDSSSQFQRRNHISVILS  176 (359)
Q Consensus       109 ~l~v~~~~------~~i~~~~~~~~~-~~~~~~~~~----~~~~~~~~~l~~d~~-g~~l~v~d~~~~~~~~~~~~~~~~  176 (359)
                      .+|++...      .+|++ ..++|+ .+.+.....    .........|+++|. .+.+|++.                
T Consensus        75 ~vy~~tg~~~~~~~~gi~~-S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~----------------  137 (427)
T d2ebsa1          75 RLYLAQGRYVGDEWAAFYV-SEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT----------------  137 (427)
T ss_dssp             EEEEEECSCTTSSCCEEEE-ESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC----------------
T ss_pred             EEEEEeccccCCcCccEEE-eCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc----------------
Confidence            68887532      23544 444443 444332111    111223456899975 23488872                


Q ss_pred             cCCCceEEEEeCCCCcEEEEeCC---C---CCCceEEEccC-CCEEEEEecCCCEEEE
Q 018242          177 GDKTGRLMKYDPATKQVTVLLGN---L---SFPNGVALSED-GNYILLAETTSCRILR  227 (359)
Q Consensus       177 ~~~~g~v~~~d~~~~~~~~~~~~---~---~~p~gia~~~d-~~~l~v~~~~~~~i~~  227 (359)
                        ..++|++-.-.+...+.+...   .   .....++++|. ...+|++.....+|++
T Consensus       138 --~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         138 --RTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             --SSSCEEEESSTTSSCEECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             --cccceeeecCCCceeeecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence              234577644433344433211   1   11235677764 4568887776677775

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=1.5  Score=38.61  Aligned_cols=37  Identities=5%  Similarity=-0.098  Sum_probs=25.8

Q ss_pred             CCCceEEEccCCCeeEEecC---------CCEEEEEEcCCcceEEE
Q 018242           34 IGPESLAFDALGEGPYTGVS---------DGRIIKWHQDQRRWLHF   70 (359)
Q Consensus        34 ~~p~~i~~~~~G~~l~~~~~---------~~~i~~~d~~~~~~~~~   70 (359)
                      ..+....++|||+.+++...         .+.++.+|..+++.+.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l  106 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL  106 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec
Confidence            35678889999996555432         36778889887755544

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=94.15  E-value=0.86  Score=34.77  Aligned_cols=155  Identities=17%  Similarity=0.087  Sum_probs=85.1

Q ss_pred             CCCCCCceEEEccCCCeeEEecCCCEEEEEEcCCcc-eEEEeecCCCCCCCCCCcccccccc-cccCCcceEEEEecCCC
Q 018242           31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRDGCEGAYEYDHAAK-EHICGRPLGLCFNKTNG  108 (359)
Q Consensus        31 ~~~~~p~~i~~~~~G~~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gi~~~~~~g  108 (359)
                      ++...=.-|+++|+|+ ||+-.. +.+|+=.+.+.+ -..|..           +.    .+ ...=+.-.-+.||| +|
T Consensus        37 ~g~~n~~~i~fsP~G~-LyaVr~-~~lY~Gp~~s~~nq~wf~~-----------at----rIG~ggWn~FkflffdP-~G   98 (235)
T d1tl2a_          37 GGWSNFKFLFLSPGGE-LYGVLN-DKIYKGTPPTHDNDNWMGR-----------AK----KIGNGGWNQFQFLFFDP-NG   98 (235)
T ss_dssp             SSCTTCSEEEECTTSC-EEEEET-TEEEEESCCCSTTCCHHHH-----------CE----EEECSCGGGCSEEEECT-TS
T ss_pred             ccccceeEEEECCCCc-EEEEEC-CeEEECCCCCcchHHHHHh-----------hh----hcccCcccceEEEEECC-Cc
Confidence            3355555699999999 777666 377765443320 000000           00    00 00001234678999 99


Q ss_pred             eEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEE
Q 018242          109 DLYIADAYFGLLKVGPEGGLATAVA---TQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMK  185 (359)
Q Consensus       109 ~l~v~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  185 (359)
                      -||+.+. +.|+|=.+.+.+.....   ..+....-.....|.+||+|. ||.....                   .+++
T Consensus        99 ~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~~~-------------------~l~k  157 (235)
T d1tl2a_          99 YLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVHGQ-------------------QFYK  157 (235)
T ss_dssp             CEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEETT-------------------EEEE
T ss_pred             eEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEECC-------------------cEEE
Confidence            9999874 57888766554322111   001111223345688999999 9988432                   4776


Q ss_pred             EeCCCCc-------EEEEe-CCCCCCceEEEccCCCEEEEEecCCCEEEE
Q 018242          186 YDPATKQ-------VTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILR  227 (359)
Q Consensus       186 ~d~~~~~-------~~~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~  227 (359)
                      -.|.++.       .+.+- .....+..|.|+|||+ |++...  +.+++
T Consensus       158 ~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~~--g~~Y~  204 (235)
T d1tl2a_         158 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQG--GKFYE  204 (235)
T ss_dssp             ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEET--TEEEE
T ss_pred             cCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEeC--CeEEe
Confidence            6654432       11222 2334567899999997 666632  44543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.07  E-value=1.8  Score=39.41  Aligned_cols=126  Identities=15%  Similarity=0.099  Sum_probs=66.5

Q ss_pred             CCCeeEEecC-CCEEEEEEc-CCcceE-EEeecCCCCCCCCCCcccccccccccCCcceEEEEecCC----CeEEEEeCC
Q 018242           44 LGEGPYTGVS-DGRIIKWHQ-DQRRWL-HFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTN----GDLYIADAY  116 (359)
Q Consensus        44 ~G~~l~~~~~-~~~i~~~d~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~----g~l~v~~~~  116 (359)
                      +|. +|+++. .+.++.+|. ++++.. ++. +... .     .. +  ........-+|+++.+.+    ..+|+++..
T Consensus        62 ~g~-ly~~t~~~~~v~a~d~~~tG~~~W~~~-~~~~-~-----~~-~--~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~d  130 (596)
T d1w6sa_          62 DGK-MYIHTSFPNNTFALGLDDPGTILWQDK-PKQN-P-----AA-R--AVACCDLVNRGLAYWPGDGKTPALILKTQLD  130 (596)
T ss_dssp             TTE-EEEECSTTTCEEEEETTCTTSEEEEEC-CCCC-G-----GG-G--GGCSSCSCCCCCEEECCCSSSCCEEEEECTT
T ss_pred             CCE-EEEeeCCCCcEEEEeCCCCCCEEEEec-CCCC-c-----cc-c--cccccccccceeEEecCCCCCceEEEEEeCC
Confidence            466 777654 578999996 566533 332 1000 0     00 0  000000112467765422    248888766


Q ss_pred             CcEEEEeCCCCeEEEEeecCC---CccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcE
Q 018242          117 FGLLKVGPEGGLATAVATQSE---GIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQV  193 (359)
Q Consensus       117 ~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  193 (359)
                      ..|+.+|.++|+.........   ......+- +.+  ++. +++...+..+            ...|.|..+|..||+.
T Consensus       131 g~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P-~v~--~~~-vivg~~~~e~------------~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         131 GNVAALNAETGETVWKVENSDIKVGSTLTIAP-YVV--KDK-VIIGSSGAEL------------GVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTCBCCSCC-EEE--TTE-EEECCBCGGG------------TCCCEEEEEETTTCCE
T ss_pred             CCeEeeccccCceeccccccccccccccccCC-cEE--CCe-EEEeeccccc------------cccCceEEEECCCCcE
Confidence            679999999998643222111   01111111 222  555 8887554221            2357799999999988


Q ss_pred             EEE
Q 018242          194 TVL  196 (359)
Q Consensus       194 ~~~  196 (359)
                      ...
T Consensus       195 ~W~  197 (596)
T d1w6sa_         195 VWR  197 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.69  E-value=2.1  Score=38.74  Aligned_cols=73  Identities=11%  Similarity=0.085  Sum_probs=46.3

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCCCcEEEEe
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVG  123 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~~~i~~~~  123 (359)
                      +|. +|+++.++.|+.+|+.+++...--... .+..          ..........|+++.  ++.+++++....++.+|
T Consensus        68 ~g~-vy~~t~~~~v~AlDa~TG~~lW~~~~~-~~~~----------~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~ald  133 (582)
T d1flga_          68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHR-LPDD----------IRPCCDVVNRGAAIY--GDKVFFGTLDASVVALN  133 (582)
T ss_dssp             TTE-EEEEETTTEEEEEESSSCCEEEEEECC-CCTT----------CCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEE
T ss_pred             CCE-EEEeCCCCeEEEEeCCCCCeEEEEcCC-CCCc----------cccccccccCCceEe--CCceEEecCCCeEEEec
Confidence            566 899999999999999987644321110 0000          000001112456665  67899998777899999


Q ss_pred             CCCCeEE
Q 018242          124 PEGGLAT  130 (359)
Q Consensus       124 ~~~~~~~  130 (359)
                      .++|+..
T Consensus       134 a~tG~~~  140 (582)
T d1flga_         134 KNTGKVV  140 (582)
T ss_dssp             SSSCCEE
T ss_pred             cccccee
Confidence            9998754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.69  E-value=1.2  Score=37.39  Aligned_cols=126  Identities=13%  Similarity=-0.000  Sum_probs=73.3

Q ss_pred             eEEEccCCCeeEEecCC-----C------EEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecC
Q 018242           38 SLAFDALGEGPYTGVSD-----G------RIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKT  106 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~-----~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~  106 (359)
                      ..+.-.+|++++++-..     +      .+.+||+.+++|+......                 ......-.+.++.. 
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------------~~~~~~~~~~~~~~-   85 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------------TKHDMFCPGISMDG-   85 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------------CSCCCSSCEEEECT-
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC-----------------CCcccceeEEEEec-
Confidence            33444578855554421     1      3678999988775432110                 00001123566777 


Q ss_pred             CCeEEEEeCC--CcEEEEeCCCCeEEEEeecCCCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEE
Q 018242          107 NGDLYIADAY--FGLLKVGPEGGLATAVATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLM  184 (359)
Q Consensus       107 ~g~l~v~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~  184 (359)
                      ++.++++...  +.+.+||++++..+..... .  ....-+..++.+||+ +|+.-....           .......+.
T Consensus        86 ~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~-~--~~r~~~~~~~~~dG~-v~v~GG~~~-----------~~~~~~~v~  150 (387)
T d1k3ia3          86 NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM-Q--VARGYQSSATMSDGR-VFTIGGSWS-----------GGVFEKNGE  150 (387)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEECCCC-S--SCCSSCEEEECTTSC-EEEECCCCC-----------SSSCCCCEE
T ss_pred             CCcEEEeecCCCcceeEecCccCcccccccc-c--ccccccceeeecCCc-eeeeccccc-----------cccccceee
Confidence            8888887432  3588999999887654321 1  112335678888999 887722110           011224588


Q ss_pred             EEeCCCCcEEEE
Q 018242          185 KYDPATKQVTVL  196 (359)
Q Consensus       185 ~~d~~~~~~~~~  196 (359)
                      +||+.+++...+
T Consensus       151 ~yd~~~~~W~~~  162 (387)
T d1k3ia3         151 VYSPSSKTWTSL  162 (387)
T ss_dssp             EEETTTTEEEEE
T ss_pred             eecCCCCceeec
Confidence            999998877654

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=91.89  E-value=2  Score=32.72  Aligned_cols=143  Identities=14%  Similarity=0.013  Sum_probs=79.6

Q ss_pred             cceEEEEecCCCeEEEEeCCCcEEEEeCCCCeEEEE---eecCCCccccccceEEEeCCCCEEEEEeCCCccccccceee
Q 018242           97 RPLGLCFNKTNGDLYIADAYFGLLKVGPEGGLATAV---ATQSEGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISV  173 (359)
Q Consensus        97 ~p~gi~~~~~~g~l~v~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~  173 (359)
                      +..-|+++| +|+||.... +.+++=.+.+..-+..   +..+..-.-....-+.+||+|- ||...             
T Consensus        41 n~~~i~fsP-~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~-LyaVt-------------  104 (235)
T d1tl2a_          41 NFKFLFLSP-GGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAVS-------------  104 (235)
T ss_dssp             TCSEEEECT-TSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEEE-------------
T ss_pred             ceeEEEECC-CCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCce-EEEec-------------
Confidence            345689999 999998763 3566544332211100   0111111223445689999998 99883             


Q ss_pred             eeecCCCceEEEEeCCCCcEE-------EEe-CCCCCCceEEEccCCCEEEEEecCCCEEEEEEcCCCCCc----ceeEe
Q 018242          174 ILSGDKTGRLMKYDPATKQVT-------VLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG----TIEIV  241 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~-------~~~-~~~~~p~gia~~~d~~~l~v~~~~~~~i~~~~~~~~~~~----~~~~~  241 (359)
                            .+.+|+-.|.+.+..       .+- .+-..-..+-|+|+|. ||....  +++++.....+...    .-..+
T Consensus       105 ------~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~-LYaV~~--~~l~k~~pP~~~~d~WL~~st~i  175 (235)
T d1tl2a_         105 ------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVHG--QQFYKALPPVSNQDNWLARATKI  175 (235)
T ss_dssp             ------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEET--TEEEEECCCSSTTCCHHHHCEEE
T ss_pred             ------CcceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCce-EEEEEC--CcEEEcCCCCCCCchhhhhhhhh
Confidence                  247888777654432       111 1112234677899986 787743  35777653221111    11122


Q ss_pred             ec-CCCCCCceEECCCCCEEEEEe
Q 018242          242 AQ-LPGFPDNIKRSPRGGFWVGIH  264 (359)
Q Consensus       242 ~~-~~~~p~~i~~d~~G~lwv~~~  264 (359)
                      .. .-..+.-+.+.++|+||....
T Consensus       176 gr~~w~~~~fi~Fs~dG~L~~v~~  199 (235)
T d1tl2a_         176 GQGGWDTFKFLFFSSVGTLFGVQG  199 (235)
T ss_dssp             ESSSGGGEEEEEECTTSCEEEEET
T ss_pred             ccCcccCceEEEECCCCcEEEEeC
Confidence            21 112356799999999998753

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.49  E-value=4.7  Score=36.27  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             eEEEccCCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC-
Q 018242           38 SLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY-  116 (359)
Q Consensus        38 ~i~~~~~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~-  116 (359)
                      +++.. +++ +|+.+.+++++.+|.++++...-........      +    . ......|  +.  . ++.++++... 
T Consensus       123 g~~~~-~~~-v~~~t~~g~l~alda~tG~~~W~~~~~~~~~------~----~-~~~~~~p--~v--~-~~~vivg~~~~  184 (573)
T d1kb0a2         123 GVALW-KGK-VYVGAWDGRLIALDAATGKEVWHQNTFEGQK------G----S-LTITGAP--RV--F-KGKVIIGNGGA  184 (573)
T ss_dssp             CCEEE-TTE-EEEECTTSEEEEEETTTCCEEEEEETTTTCC------S----S-CBCCSCC--EE--E-TTEEEECCBCT
T ss_pred             cceEE-CCc-EEEEecccceeeeccccccceecccCccCCc------c----e-EEeecce--EE--E-eccEEEeeccc
Confidence            34443 344 7778888999999999886543221110000      0    0 0001112  11  1 6677775432 


Q ss_pred             -----CcEEEEeCCCCeEEEEeecCCC---ccc------------------------ccc-ceEEEeCCCCEEEEEeCCC
Q 018242          117 -----FGLLKVGPEGGLATAVATQSEG---IPF------------------------RFC-NSLDIDQSTGIIYFTDSSS  163 (359)
Q Consensus       117 -----~~i~~~~~~~~~~~~~~~~~~~---~~~------------------------~~~-~~l~~d~~g~~l~v~d~~~  163 (359)
                           +.|..+|.++|+..-.....+.   .+.                        ..+ ....+|++.+.+|+.....
T Consensus       185 ~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~  264 (573)
T d1kb0a2         185 EYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNG  264 (573)
T ss_dssp             TTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred             cccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCC
Confidence                 2488899999986533221110   000                        001 2367888877577664321


Q ss_pred             cccccc-ceeeeeecCCCceEEEEeCCCCcEEEEe
Q 018242          164 QFQRRN-HISVILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       164 ~~~~~~-~~~~~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      ...... .............|+.+|+++++.+...
T Consensus       265 ~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~  299 (573)
T d1kb0a2         265 SPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY  299 (573)
T ss_dssp             ESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             ccccccccccccccccccceEEEecccchheeecc
Confidence            100000 0000011123457999999999888654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.83  E-value=6.6  Score=35.22  Aligned_cols=127  Identities=11%  Similarity=0.011  Sum_probs=70.5

Q ss_pred             CCCeeEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCccccccccccc-CCcceEEEEecCCCeEEEEeCCCcEEEE
Q 018242           44 LGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHI-CGRPLGLCFNKTNGDLYIADAYFGLLKV  122 (359)
Q Consensus        44 ~G~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~gi~~~~~~g~l~v~~~~~~i~~~  122 (359)
                      +|. +|+++.++.|+.+|.++++...--.+. ....         ...... .....++.+.  ++++|+++....++.+
T Consensus        77 ~g~-vyv~t~~~~v~AlDa~TG~~~W~~~~~-~~~~---------~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~al  143 (573)
T d1kb0a2          77 DGI-MYVSASWSVVHAIDTRTGNRIWTYDPQ-IDRS---------TGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIAL  143 (573)
T ss_dssp             TTE-EEEECGGGCEEEEETTTTEEEEEECCC-CCGG---------GGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred             CCE-EEEECCCCeEEEEeCCCCCeEEEeCCC-CCcc---------cccccccccccccceEE--CCcEEEEecccceeee
Confidence            566 888888899999999988644321110 0000         000001 1112355565  6789998777779999


Q ss_pred             eCCCCeEEEEeecCCCcc-ccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          123 GPEGGLATAVATQSEGIP-FRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      |.++|+..--........ ......--+-.++. +++......            ....|.|+.+|.+||+....
T Consensus       144 da~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~-vivg~~~~~------------~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGK-VIIGNGGAE------------YGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTE-EEECCBCTT------------TCCBCEEEEEETTTCCEEEE
T ss_pred             ccccccceecccCccCCcceEEeecceEEEecc-EEEeecccc------------ccccceEEEEecCCccceee
Confidence            999998643222111111 01111111112555 777744322            12346799999999987764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.52  E-value=5.1  Score=34.37  Aligned_cols=130  Identities=11%  Similarity=-0.010  Sum_probs=68.7

Q ss_pred             EEEEeCCCCeEEEEeecC--CCccccccceEEEeCCCCEEEEEeCCCccccccceeeeeecCCCceEEEEeCCCCcEEEE
Q 018242          119 LLKVGPEGGLATAVATQS--EGIPFRFCNSLDIDQSTGIIYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVL  196 (359)
Q Consensus       119 i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~d~~g~~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  196 (359)
                      +++.....+..+.+.+..  .........++.++|+|+++.++.+.             .++..-.+..+|..+++....
T Consensus       100 ~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~-------------~G~e~~~l~v~Dl~tg~~~~~  166 (430)
T d1qfma1         100 LYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPD  166 (430)
T ss_dssp             EEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEE
T ss_pred             EEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEecc-------------ccCchheeEEeccCcceeccc
Confidence            444444445544444321  11111233467889999966666321             112234688899998876432


Q ss_pred             eCCCCCCceEEEccCCCEEEEEecC---------------CCEEEEEEcCCCCCcceeEeecCC--CCCCceEECCCCCE
Q 018242          197 LGNLSFPNGVALSEDGNYILLAETT---------------SCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGF  259 (359)
Q Consensus       197 ~~~~~~p~gia~~~d~~~l~v~~~~---------------~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~l  259 (359)
                      .-......++++.+|++.+|.+...               ...+++..+..+.......+....  ...-++...++|+.
T Consensus       167 ~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~  246 (430)
T d1qfma1         167 VLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY  246 (430)
T ss_dssp             EEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             ccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce
Confidence            1111223678899999988776432               236888777554333333333321  12223456677764


Q ss_pred             EE
Q 018242          260 WV  261 (359)
Q Consensus       260 wv  261 (359)
                      .+
T Consensus       247 l~  248 (430)
T d1qfma1         247 VL  248 (430)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.49  E-value=6.9  Score=34.97  Aligned_cols=133  Identities=16%  Similarity=0.149  Sum_probs=67.4

Q ss_pred             eEEecCCCEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeCC------CcEEE
Q 018242           48 PYTGVSDGRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAY------FGLLK  121 (359)
Q Consensus        48 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~~------~~i~~  121 (359)
                      +|+.+.++.|+.+|..+++............            .......|  + +.  ++.++++...      +.|..
T Consensus       120 v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~------------~~~~~~~p--~-v~--~~~vivg~~~~~~~~~G~v~a  182 (560)
T d1kv9a2         120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPAK------------PYSITGAP--R-VV--KGKVIIGNGGAEYGVRGFVSA  182 (560)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSCTTS------------SCBCCSCC--E-EE--TTEEEECCBCTTTCCBCEEEE
T ss_pred             EEEEeCCCEEEEEECCCCcEEeccCccCccc------------ceeeeeee--e-ee--cCcccccccceeccccceEEE
Confidence            7888888999999998886544221110000            00000111  1 11  5666665322      23888


Q ss_pred             EeCCCCeEEEEeecCCCcc--------------------------c-cccceEEEeCCCCEEEEEeCCCcc-ccccceee
Q 018242          122 VGPEGGLATAVATQSEGIP--------------------------F-RFCNSLDIDQSTGIIYFTDSSSQF-QRRNHISV  173 (359)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~--------------------------~-~~~~~l~~d~~g~~l~v~d~~~~~-~~~~~~~~  173 (359)
                      +|.++|+..-.....+...                          . ..=..+.+|++.+.+|+....... ........
T Consensus       183 ~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~  262 (560)
T d1kv9a2         183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG  262 (560)
T ss_dssp             EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred             EECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccccccccc
Confidence            9999998653322211100                          0 011236889888867776432110 00000000


Q ss_pred             eeecCCCceEEEEeCCCCcEEEEe
Q 018242          174 ILSGDKTGRLMKYDPATKQVTVLL  197 (359)
Q Consensus       174 ~~~~~~~g~v~~~d~~~~~~~~~~  197 (359)
                      .........|+.+|.++++.+...
T Consensus       263 ~g~n~~s~sivAld~~tG~~~W~~  286 (560)
T d1kv9a2         263 GGDNLYLSSILAIRPDTGKLAWHY  286 (560)
T ss_dssp             CCCCTTTTEEEEECTTTCCEEEEE
T ss_pred             CCccccceeeEEecCCccceeEEE
Confidence            001122457999999999987653

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=88.68  E-value=4.8  Score=34.31  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CCcceEEEEecCC-CeEEEEeCCCcEEEEeCCCCeEEEEeecCC--CccccccceEEEeCCC-CEEEEEeCCCccccccc
Q 018242           95 CGRPLGLCFNKTN-GDLYIADAYFGLLKVGPEGGLATAVATQSE--GIPFRFCNSLDIDQST-GIIYFTDSSSQFQRRNH  170 (359)
Q Consensus        95 ~~~p~gi~~~~~~-g~l~v~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~d~~g-~~l~v~d~~~~~~~~~~  170 (359)
                      .+...+|+++|.+ +.+|++...+||+|-+-.+...+.+.....  ......+.+|++||+. +++|++.....      
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~------   84 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV------   84 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT------
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecccc------
Confidence            4567899999865 457777656689886655555555432111  1123356789999873 34888743210      


Q ss_pred             eeeeeecCCCceEEEEeCCCCcEEEEeCCC---------CCCceEEEccC-CCEEEEEecCCCEEEE
Q 018242          171 ISVILSGDKTGRLMKYDPATKQVTVLLGNL---------SFPNGVALSED-GNYILLAETTSCRILR  227 (359)
Q Consensus       171 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~---------~~p~gia~~~d-~~~l~v~~~~~~~i~~  227 (359)
                            ....++|++-.-.+.....+....         .....++++|. .+.+|++ ...+.|++
T Consensus        85 ------~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~  144 (427)
T d2ebsa1          85 ------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWK  144 (427)
T ss_dssp             ------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEE
T ss_pred             ------CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceee
Confidence                  112345766544433444433221         11245888875 3456665 44456765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.57  E-value=8.6  Score=31.75  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             ceEEEccCCCeeEEecCC-CEEEEEEcCCcceEEEeecCCCCCCCCCCcccccccccccCCcceEEEEecCCCeEEEEeC
Q 018242           37 ESLAFDALGEGPYTGVSD-GRIIKWHQDQRRWLHFARTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADA  115 (359)
Q Consensus        37 ~~i~~~~~G~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gi~~~~~~g~l~v~~~  115 (359)
                      .+.++.++|++++++..+ ..+.+||+.++.|+.....                  . ....-++.++.. +|++|+...
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~------------------~-~~r~~~~~~~~~-dG~v~v~GG  138 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDM------------------Q-VARGYQSSATMS-DGRVFTIGG  138 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCC------------------S-SCCSSCEEEECT-TSCEEEECC
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccc------------------c-ccccccceeeec-CCceeeecc
Confidence            367788999955555433 5789999999888764311                  1 111224566666 788888742


Q ss_pred             C-------CcEEEEeCCCCeEEEEe
Q 018242          116 Y-------FGLLKVGPEGGLATAVA  133 (359)
Q Consensus       116 ~-------~~i~~~~~~~~~~~~~~  133 (359)
                      .       +.+.++|+.+++.+.+.
T Consensus       139 ~~~~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         139 SWSGGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             CCCSSSCCCCEEEEETTTTEEEEET
T ss_pred             ccccccccceeeeecCCCCceeecC
Confidence            1       23889999999887653