Citrus Sinensis ID: 018246
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | 2.2.26 [Sep-21-2011] | |||||||
| P42734 | 360 | Probable cinnamyl alcohol | yes | no | 0.991 | 0.988 | 0.766 | 1e-161 | |
| O82515 | 359 | Probable mannitol dehydro | N/A | no | 0.988 | 0.988 | 0.775 | 1e-152 | |
| Q43137 | 354 | Probable mannitol dehydro | N/A | no | 0.958 | 0.971 | 0.762 | 1e-146 | |
| Q9SJ25 | 376 | Cinnamyl alcohol dehydrog | no | no | 0.969 | 0.925 | 0.708 | 1e-144 | |
| Q9SJ10 | 375 | Cinnamyl alcohol dehydrog | no | no | 0.969 | 0.928 | 0.699 | 1e-143 | |
| Q2KNL6 | 360 | Geraniol dehydrogenase 1 | N/A | no | 0.991 | 0.988 | 0.657 | 1e-136 | |
| Q9ZRF1 | 359 | Probable mannitol dehydro | N/A | no | 0.977 | 0.977 | 0.658 | 1e-135 | |
| Q6V4H0 | 360 | 8-hydroxygeraniol dehydro | N/A | no | 0.991 | 0.988 | 0.671 | 1e-134 | |
| P93257 | 361 | Probable mannitol dehydro | N/A | no | 0.991 | 0.986 | 0.661 | 1e-133 | |
| Q38707 | 365 | Mannitol dehydrogenase OS | N/A | no | 0.991 | 0.975 | 0.640 | 1e-130 |
| >sp|P42734|CADH9_ARATH Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/356 (76%), Positives = 312/356 (87%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETEHP K GW ARD +G SPFHFSRR+ G +DVT+KILFCG+CH+DLH +N+
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG TKVG NV+KFKEGD+VGVGV+ SCQ CESC Q LENYCP M
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
TYN+I DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGM
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TE GKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS+S K EAI+ LGAD+FLV++DP K
Sbjct: 181 TEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDT+SAVH+L PLLGLLKVNGKL+ +GLPEKPLE+P+F LV R++VGG
Sbjct: 241 MKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S+VGGMKETQEMLDFCAKHNI ADIEL++MD+INTAMERLAKSDV+YRFVIDV NS
Sbjct: 301 SDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVIDVANS 356
|
Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 5 |
| >sp|O82515|MTDH_MEDSA Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/356 (77%), Positives = 309/356 (86%), Gaps = 1/356 (0%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETE P KA GWAARD +GT SPFHFSRRE G DDV++KIL+CG+CHSDLH +N+
Sbjct: 1 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKND 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG T YP+VPGHEIVG VTKVG NV KF+ GD VGVGV+V SCQ CE+C Q LE YCP
Sbjct: 61 WGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKP 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
+ TYNS + GT+TYGGYSD +VV Q YV++FPDN+PLDAGAPLLCAGITVYSPMKYYGM
Sbjct: 121 VFTYNSPYK-GTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGM 179
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLGVAGLGGLGHVA+K GKAFGLKVTVISTSP KE+EAI KLGAD+FLVS DP K
Sbjct: 180 TEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEK 239
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAAMGTMDYIIDT+SA HSL PLLGLLK+NGKLVTVGLP KPLE+ +F LV R+L+GG
Sbjct: 240 MKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGG 299
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
SN+GGMKETQEMLDFC KHNI ADIEL++M +INTAMERL K+DVKYRFVIDV NS
Sbjct: 300 SNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANS 355
|
Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level. Medicago sativa (taxid: 3879) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q43137|MTDH1_STYHU Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1337), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/345 (76%), Positives = 305/345 (88%), Gaps = 1/345 (0%)
Query: 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG 71
KA GWAA+D +G SPFHF+RR+ ADDVT+KIL+CG+CHSDLH +N+WG T YP+VPG
Sbjct: 5 KAFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPG 64
Query: 72 HEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDG 131
HEI G VTKVG+NV+KFKEGD+VGVGV+V SCQ+CE CQQ LE+YCP + TYNS + G
Sbjct: 65 HEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNSPYK-G 123
Query: 132 TKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG 191
T+T GGYSD +VV Q +VL+FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG
Sbjct: 124 TRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG 183
Query: 192 LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYI 251
LGGLGHVA+K GKAFGLKVTVIS+SP KESEAI LGAD+FL+SSDP K+KAA GTMDYI
Sbjct: 184 LGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFLLSSDPEKMKAATGTMDYI 243
Query: 252 IDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQE 311
IDT+SAVHSL LLGLLK+NGKLVTVGLP KPL++PIF LV R+L+GGSN GG+KETQE
Sbjct: 244 IDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQLPIFPLVAGRKLIGGSNFGGLKETQE 303
Query: 312 MLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
MLDFC KHNIAA+IEL++MD+INTA+ERL+K+DVKYRFVIDV NS
Sbjct: 304 MLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANS 348
|
Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level. Stylosanthes humilis (taxid: 35628) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q9SJ25|CADH2_ARATH Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/350 (70%), Positives = 291/350 (83%), Gaps = 2/350 (0%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
KA GWAA D +G SPFHFSRRE G +DVT+KILFCG+CHSDLH +N WG + YPI+P
Sbjct: 5 NKAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIP 64
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHEIVG TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS D
Sbjct: 65 GHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSD 124
Query: 131 GT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPGKHLG 188
GT + GGYSD+IVVD +VL PD +P D+GAPLLCAGITVYSPMKYYGMT E GK LG
Sbjct: 125 GTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLG 184
Query: 189 VAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 248
V GLGGLGH+AVKIGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D K+K A+GTM
Sbjct: 185 VNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTM 244
Query: 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKE 308
D+IIDTVSA H+L PL LLKVNGKLV +GLPEKPL++PIF+LV R++VGGS +GGMKE
Sbjct: 245 DFIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKE 304
Query: 309 TQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
TQEML+FCAKH I +DIEL++M IN+AM+RLAKSDV+YRFVIDV NS L
Sbjct: 305 TQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSLL 354
|
Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 5 |
| >sp|Q9SJ10|CADH3_ARATH Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/349 (69%), Positives = 288/349 (82%), Gaps = 1/349 (0%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
+A GWAA D +G SPFHFSRRE G +DVT+KILFCG+CHSDLH +N WG + YPI+P
Sbjct: 5 NRAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIP 64
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHEIVG TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS D
Sbjct: 65 GHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSD 124
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPGKHLGV 189
GT+ GGYSD+IVVD +VL PD +P D+GAPLLCAGITVYSPMKYYGMT E GK LGV
Sbjct: 125 GTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGV 184
Query: 190 AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249
GLGGLGH+AVKIGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D K+K A+GTMD
Sbjct: 185 NGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMD 244
Query: 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKET 309
+IIDTVSA H+L PL LLKV+GKLV +GL EKPL++PIF LV R++VGGS +GGMKET
Sbjct: 245 FIIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKET 304
Query: 310 QEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
QEML+FCAKH I +DIEL++M IN+AM+RL KSDV+YRFVIDV NS L
Sbjct: 305 QEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSLL 353
|
Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 9 EC: 5 |
| >sp|Q2KNL6|GEDH1_OCIBA Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/356 (65%), Positives = 289/356 (81%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETEHP KA+GWAA DN+GTFSPF+FSRR TG DV ++L+CG+CHSDLH +NE
Sbjct: 1 MAKSPETEHPVKALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WGVT+YPIVPGHEIVG VT+VG+ V K K GDKVGVGVLV SC++C+ C LENYC
Sbjct: 61 WGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQ 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
ILTY + DGT GGYSD++V D+H+++R+P+N PLDAGAPLLCAGIT YSP+KY+G+
Sbjct: 121 ILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGL 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
+PG +GV GLGGLGHVAVK KAFG KVTVISTS K+ EA+ LG D F+VS+DP +
Sbjct: 181 DKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQ 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
++AA+GT+D IIDTVSA H + PLL LLK +GKL+ VGLP+KPL++P+F L+ RR + G
Sbjct: 241 MQAAVGTLDGIIDTVSAPHPIVPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S +GG+KETQEM+DF AK+NI AD+E++ +D INTAM+RL KSDVKYRFVIDV S
Sbjct: 301 SGIGGLKETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKS 356
|
Involved in the production of citral, a mixture of geranial and neral with a strong lemony scent. Reversibly oxidizes geraniol and nerol in equal efficiency. Also active, although at a lower efficiency, with cinnamyl alcohol. Ocimum basilicum (taxid: 39350) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 8 EC: 3 |
| >sp|Q9ZRF1|MTDH_FRAAN Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/351 (65%), Positives = 286/351 (81%)
Query: 6 ETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTN 65
E EH +KA GWAARD++G SPF+F RRETG DVT K+L+CGICHSDLH +NEWG +
Sbjct: 4 EQEHRKKASGWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFST 63
Query: 66 YPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN 125
YP+VPGHEIVG VT+VG+ V KFK GD+VGVG +V SC+ CE+C LENYCP ILTY
Sbjct: 64 YPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYG 123
Query: 126 SIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGK 185
+ DG+ TYGGYSD++V D+H+++R PDN+PLD APLLCAGIT YSP++Y+G+ +PG
Sbjct: 124 AKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGM 183
Query: 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM 245
H+GV GLGGLGHVAVK KA G+KVTVISTSPKKE EA+ LGAD+FLVS D +++AA+
Sbjct: 184 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPKKEEEALKHLGADSFLVSRDQDQMQAAI 243
Query: 246 GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG 305
GTMD IIDTVSA H L PL+GLL +GKLV VG PEKPLE+P+F L+ R++V GS +GG
Sbjct: 244 GTMDGIIDTVSAQHPLLPLIGLLNSHGKLVMVGAPEKPLELPVFPLLMGRKMVAGSGIGG 303
Query: 306 MKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
MKETQEM+DF A+HNI ADIE++ +D +NTAMERL K+DV+YRFVID+GN+
Sbjct: 304 MKETQEMIDFAARHNITADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNT 354
|
Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level. Fragaria ananassa (taxid: 3747) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q6V4H0|10HGO_CATRO 8-hydroxygeraniol dehydrogenase OS=Catharanthus roseus GN=10HGO PE=1 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/356 (67%), Positives = 289/356 (81%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPE EHP KA GWAARD +G SPFHFSRR TG DV K+L+CGICHSDLH +NE
Sbjct: 1 MAKSPEVEHPVKAFGWAARDTSGHLSPFHFSRRATGEHDVQFKVLYCGICHSDLHMIKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG T YPIVPGHEIVG VT+VG+ V KFK GDKVGVG LV SC+KC+ C + LENYCP
Sbjct: 61 WGFTKYPIVPGHEIVGIVTEVGSKVEKFKVGDKVGVGCLVGSCRKCDMCTKDLENYCPGQ 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
ILTY++ DGT TYGGYSDL+V D+H+V+R+P+N+P+D GAPLLCAGIT YSP++Y+G+
Sbjct: 121 ILTYSATYTDGTTTYGGYSDLMVADEHFVIRWPENLPMDIGAPLLCAGITTYSPLRYFGL 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
+PG H+GV GLGGLGHVAVK KAFG KVTVISTS K+ EA+ KLGAD+FLVS DP +
Sbjct: 181 DKPGTHVGVVGLGGLGHVAVKFAKAFGAKVTVISTSESKKQEALEKLGADSFLVSRDPEQ 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA ++D IIDTVSA+H + PLL +LK +GKL+ VG PEKPLE+P F L+ R+++ G
Sbjct: 241 MKAAAASLDGIIDTVSAIHPIMPLLSILKSHGKLILVGAPEKPLELPSFPLIAGRKIIAG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S +GG+KETQEM+DF AKHN+ D+ELV MD +NTAMERL K+DVKYRFVIDV N+
Sbjct: 301 SAIGGLKETQEMIDFAAKHNVLPDVELVSMDYVNTAMERLLKADVKYRFVIDVANT 356
|
Dehydrogenase involved in the biosynthesis of oxogeranial from hydroxygeraniol, a precursor of the terpenoid indole alkaloids such as vinblastine and vincristine. Catharanthus roseus (taxid: 4058) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 2 EC: 4 |
| >sp|P93257|MTDH_MESCR Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/357 (66%), Positives = 289/357 (80%), Gaps = 1/357 (0%)
Query: 1 MAKS-PETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARN 59
MA S PE HPQKA GWAARD +GT SP FSRR TG DVT K+L+CGICHSDLH +N
Sbjct: 1 MANSAPENVHPQKAFGWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKN 60
Query: 60 EWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPN 119
EWG YP +PGHEIVG VT+VGN V FK GDKVGVG +V SC+ CESC+ LENYCP
Sbjct: 61 EWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPK 120
Query: 120 MILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 179
MILTY S DGT TYGGYSD++VV++H+ +R PDNM LDA APLLCAG+TVYSP+K++
Sbjct: 121 MILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFE 180
Query: 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239
+ +PG H+GV GLGGLGH+AVK GKAFG KVTVISTSP K+ EA+++LGAD+F+VS +P
Sbjct: 181 LDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPE 240
Query: 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVG 299
++++AMGT+D IIDTVSA H L PLLGLLK GK++ VG+P+KPLE+P+F L+ R+++
Sbjct: 241 QMQSAMGTLDGIIDTVSAAHPLLPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILA 300
Query: 300 GSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
GS +GGMKETQEM+DF AKH+I +DIE+V MD +NTAMERL K DV+YRFVIDV N+
Sbjct: 301 GSCIGGMKETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANT 357
|
Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level. Mesembryanthemum crystallinum (taxid: 3544) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q38707|MTDH_APIGR Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 228/356 (64%), Positives = 274/356 (76%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKS E EHP KA GWAARD TG SPF FSRR TG DV +K+LFCG+CHSD H N
Sbjct: 1 MAKSSEIEHPVKAFGWAARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNN 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG T YPIVPGHEIVG VT+VG+ V K K GD VG+G LV SC+ CESC E++C N
Sbjct: 61 WGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENT 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TY SI DGT T+GGYSD +V D+H++LR+P N+PLD+GAPLLCAGIT YSP+KYYG+
Sbjct: 121 IDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGL 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
+PG +GV GLGGLGHVAVK+ KAFG +VTVI S K EA+ KLGAD+FL++SD +
Sbjct: 181 DKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESKRKEALEKLGADSFLLNSDQEQ 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+K A ++D IIDTV H LAPL LLK NGKLV VG PEKP E+P+F+L+ R+L+GG
Sbjct: 241 MKGARSSLDGIIDTVPVNHPLAPLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
+ GG+KETQEMLDF AKHNI AD+E++ MD +NTAMERL KSDV+YRFVID+ N+
Sbjct: 301 TINGGIKETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANT 356
|
Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level. Apium graveolens (taxid: 4045) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| 225431409 | 359 | PREDICTED: probable cinnamyl alcohol deh | 1.0 | 1.0 | 0.793 | 1e-168 | |
| 147840936 | 361 | hypothetical protein VITISV_036461 [Viti | 0.991 | 0.986 | 0.793 | 1e-164 | |
| 224060461 | 362 | cinnamyl alcohol dehydrogenase-like prot | 1.0 | 0.991 | 0.777 | 1e-164 | |
| 118485387 | 362 | unknown [Populus trichocarpa] | 1.0 | 0.991 | 0.774 | 1e-164 | |
| 255578412 | 360 | alcohol dehydrogenase, putative [Ricinus | 1.0 | 0.997 | 0.768 | 1e-162 | |
| 429326632 | 362 | sinapyl alcohol dehydrogenase [Populus t | 1.0 | 0.991 | 0.766 | 1e-162 | |
| 297797914 | 360 | hypothetical protein ARALYDRAFT_912392 [ | 0.991 | 0.988 | 0.772 | 1e-161 | |
| 22475166 | 362 | putative sinapyl alcohol dehydrogenase [ | 1.0 | 0.991 | 0.760 | 1e-160 | |
| 15235022 | 360 | putative cinnamyl alcohol dehydrogenase | 0.991 | 0.988 | 0.766 | 1e-159 | |
| 21592964 | 360 | cinnamyl-alcohol dehydrogenase CAD1 [Ara | 0.991 | 0.988 | 0.764 | 1e-159 |
| >gi|225431409|ref|XP_002279832.1| PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Vitis vinifera] gi|296088646|emb|CBI37637.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust.
Identities = 285/359 (79%), Positives = 323/359 (89%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
M KSPE EHPQKA GWAARD +GT SPFHFSRRE G +DVT+KIL+CG+CHSDLH +NE
Sbjct: 1 MVKSPEEEHPQKAFGWAARDPSGTLSPFHFSRRENGDEDVTVKILYCGVCHSDLHSVKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG+T YPIVPGHEIVG V ++GNNV KFK GD+VGVGVLV SC+ CE+CQQ LENYCP+M
Sbjct: 61 WGITRYPIVPGHEIVGIVIQLGNNVKKFKMGDRVGVGVLVGSCKTCETCQQDLENYCPSM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TYNS +DGT+TYGGYSD++VVDQ YVLR PDNMPLDAGAPLLCAGITVYSPMKYYGM
Sbjct: 121 IFTYNSTSQDGTRTYGGYSDIVVVDQRYVLRIPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLGVAGLGGLGHVAVK+GKAFGLKVTVISTSP KE EAI+KLGAD FLVS++P K
Sbjct: 181 TEPGKHLGVAGLGGLGHVAVKLGKAFGLKVTVISTSPNKEDEAINKLGADCFLVSTNPEK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
V+AA+GTMDYIIDTVSA+HSL PLL +LK+NGKL+TVGLP+KPLE+PIF LV R+L+GG
Sbjct: 241 VQAALGTMDYIIDTVSAIHSLGPLLAMLKLNGKLITVGLPDKPLELPIFPLVMGRKLIGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
S++GG+KETQEMLDFCAKHNI ADIEL++MD INTAM+RL+KSDVKYRFVIDV NS Q
Sbjct: 301 SDIGGIKETQEMLDFCAKHNITADIELIQMDYINTAMKRLSKSDVKYRFVIDVANSLSQ 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147840936|emb|CAN77732.1| hypothetical protein VITISV_036461 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/358 (79%), Positives = 321/358 (89%), Gaps = 2/358 (0%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
M KSPE EHPQKA GWAARD +GT SPFHFSRRE G +DVT+KIL+CG+CHSDLH +NE
Sbjct: 1 MVKSPEEEHPQKAFGWAARDPSGTLSPFHFSRRENGDEDVTVKILYCGVCHSDLHSVKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQ-KCE-SCQQGLENYCP 118
WG+T YPIVPGHEIVG V ++GNNV KFK GD+VGVGVLV SC CE +CQQ LENYCP
Sbjct: 61 WGITRYPIVPGHEIVGIVIQLGNNVKKFKMGDRVGVGVLVGSCNATCEQTCQQDLENYCP 120
Query: 119 NMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYY 178
+MI TYNS +DGT+TYGGYSD++VVDQ YVLR PDNMPLDAGAPLLCAGITVYSPMKYY
Sbjct: 121 SMIFTYNSTSQDGTRTYGGYSDIVVVDQRYVLRIPDNMPLDAGAPLLCAGITVYSPMKYY 180
Query: 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP 238
GMTEPGKHLGVAGLGGLGHVAVK+GKAFGLKVTVISTSP KE EAI+KLGAD FLVS++P
Sbjct: 181 GMTEPGKHLGVAGLGGLGHVAVKLGKAFGLKVTVISTSPNKEDEAINKLGADCFLVSTNP 240
Query: 239 AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLV 298
KV+AA+GTMDYIIDTVSA+HSL PLL +LK+NGKL+TVGLP+KPLE+PIF LV R+L+
Sbjct: 241 EKVQAALGTMDYIIDTVSAIHSLGPLLAMLKLNGKLITVGLPDKPLELPIFPLVMGRKLI 300
Query: 299 GGSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
GGS++GG+KETQEMLDFCAKHNI ADIEL++MD INTAM+RL+KSDVKYRFVIDV NS
Sbjct: 301 GGSDIGGIKETQEMLDFCAKHNITADIELIQMDYINTAMKRLSKSDVKYRFVIDVANS 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060461|ref|XP_002300211.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222847469|gb|EEE85016.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 279/359 (77%), Positives = 317/359 (88%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPE EHP KA GWAA+D++G SPFHFSRR+ G +DVTIKIL+CG+CHSDLH A+NE
Sbjct: 1 MAKSPEVEHPHKAFGWAAKDSSGVLSPFHFSRRDNGVEDVTIKILYCGVCHSDLHAAKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG VTK+G+NV KFK D+VGVGVLV SC+ CE C Q LENYCP M
Sbjct: 61 WGFSRYPLVPGHEIVGIVTKIGSNVKKFKVDDQVGVGVLVNSCKSCEYCDQDLENYCPKM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TYN+ + DGTKTYGGYSD IVVDQH+VLR PD+MP D APLLCAGITVYSPMKYYGM
Sbjct: 121 IFTYNAQNHDGTKTYGGYSDTIVVDQHFVLRIPDSMPADGAAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLG+ GLGGLGHVAVKIGKAFGLKVTVIS+S +KESEA+ +LGAD+FLVSSDP K
Sbjct: 181 TEPGKHLGIVGLGGLGHVAVKIGKAFGLKVTVISSSSRKESEALDRLGADSFLVSSDPEK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA GTMDYIIDTVSAVH+LAPLL LLK NGKLVT+GLPEKPLE+PIF LV R+LVGG
Sbjct: 241 MKAAFGTMDYIIDTVSAVHALAPLLSLLKTNGKLVTLGLPEKPLELPIFPLVLGRKLVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
S++GG+KETQEMLDFCAKHNI +D+E++RMDQINTAM+RLAKSDV+YRFVIDV NS Q
Sbjct: 301 SDIGGVKETQEMLDFCAKHNITSDVEVIRMDQINTAMDRLAKSDVRYRFVIDVANSLSQ 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118485387|gb|ABK94550.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 278/359 (77%), Positives = 317/359 (88%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPE EHP KA GWAA+D++G SPFHFSRR+ G +DVTIKIL+CG+CHSDLH A+NE
Sbjct: 1 MAKSPEVEHPHKAFGWAAKDSSGVLSPFHFSRRDNGVEDVTIKILYCGVCHSDLHAAKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP++PGHEIVG VTK+G+NV KFK D+VGVGVLV SC+ CE C Q LENYCP M
Sbjct: 61 WGFSRYPLIPGHEIVGIVTKIGSNVKKFKVDDQVGVGVLVNSCKSCEYCDQDLENYCPKM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TYN+ + DGTKTYGGYSD IVVDQH+VLR PD+MP D APLLCAGITVYSPMKYYGM
Sbjct: 121 IFTYNAQNHDGTKTYGGYSDTIVVDQHFVLRIPDSMPADGAAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLG+ GLGGLGHVAVKIGKAFGLKVTVIS+S +KESEA+ +LGAD+FLVSSDP K
Sbjct: 181 TEPGKHLGIVGLGGLGHVAVKIGKAFGLKVTVISSSSRKESEALDRLGADSFLVSSDPEK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA GTMDYIIDTVSAVH+LAPLL LLK NGKLVT+GLPEKPLE+PIF LV R+LVGG
Sbjct: 241 MKAAFGTMDYIIDTVSAVHALAPLLSLLKTNGKLVTLGLPEKPLELPIFPLVLGRKLVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
S++GG+KETQEMLDFCAKHNI +D+E++RMDQINTAM+RLAKSDV+YRFVIDV NS Q
Sbjct: 301 SDIGGVKETQEMLDFCAKHNITSDVEVIRMDQINTAMDRLAKSDVRYRFVIDVANSLSQ 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578412|ref|XP_002530071.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223530424|gb|EEF32311.1| alcohol dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/359 (76%), Positives = 321/359 (89%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAK+PE EHPQKA GWAARD +G SPFHFSRRE +DVT+KIL+CG+CHSDLH RNE
Sbjct: 1 MAKTPEDEHPQKAFGWAARDISGILSPFHFSRRENTDEDVTVKILYCGVCHSDLHTCRNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG ++YP+VPGHEIVGTVTK G+NV KFK GD+VGVGV++ SC+ CE C+Q LENYCP M
Sbjct: 61 WGFSHYPLVPGHEIVGTVTKTGSNVKKFKAGDRVGVGVIIGSCKSCEYCKQDLENYCPKM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
+ TYNS DGTK YGGYS++IVVDQH+V+R PD++PLDA APLLCAGITVYSPMKYYG+
Sbjct: 121 MFTYNSHGADGTKNYGGYSNMIVVDQHFVVRLPDSLPLDAAAPLLCAGITVYSPMKYYGI 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLG+AGLGGLGH+AVKIGKAFGLKVTVISTS +KE+EAI++LGADAFL+SSDP K
Sbjct: 181 TEPGKHLGIAGLGGLGHIAVKIGKAFGLKVTVISTSARKENEAITRLGADAFLISSDPGK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDTVSAVH+LAPLL LLK NGKL+T+GLPEKPLE+PIF LV R+LVGG
Sbjct: 241 MKAAIGTMDYIIDTVSAVHALAPLLSLLKPNGKLITLGLPEKPLELPIFPLVLGRKLVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
S++GG+KETQEMLDFCAKHNI AD+E++ MD+IN AM+RLAKSDVKYRFVIDVGNS Q
Sbjct: 301 SDIGGIKETQEMLDFCAKHNITADVEVIGMDEINMAMDRLAKSDVKYRFVIDVGNSLSQ 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|429326632|gb|AFZ78656.1| sinapyl alcohol dehydrogenase [Populus tomentosa] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 275/359 (76%), Positives = 314/359 (87%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPE EHP KA GWAA+D++G SPFHF+RR+ G +DVTIKIL+CG+CHSDLH A+NE
Sbjct: 1 MAKSPEEEHPHKAFGWAAKDSSGVLSPFHFTRRDNGVEDVTIKILYCGVCHSDLHAAKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG VTK+G+NV KFK D+VGVGV+V SC+ CE C Q ENYCP M
Sbjct: 61 WGFSRYPLVPGHEIVGIVTKIGSNVKKFKVDDQVGVGVMVNSCKSCEYCDQDSENYCPKM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TYN+ + DGTKTYGGYSD IVVDQH+VL PD+MP D APLLCAGITVYSPMKYYGM
Sbjct: 121 IFTYNAHNYDGTKTYGGYSDTIVVDQHFVLHIPDSMPADGAAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLG+ GLGGLGHVAVKIGKAFGLKVTVIS+S +KE EA+ +LGAD+F+VSSDP K
Sbjct: 181 TEPGKHLGIVGLGGLGHVAVKIGKAFGLKVTVISSSSRKEREALDRLGADSFVVSSDPEK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA GTMDYIIDTVSAVH+LAPLL LLK NGKLVT+GLPEKPLE+PIF LV R+LVGG
Sbjct: 241 MKAAFGTMDYIIDTVSAVHALAPLLSLLKTNGKLVTLGLPEKPLELPIFPLVLGRKLVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
S++GGMKETQEMLDFCAKHNI +D+E++RMDQINTAMERLAKSDV+YRFVIDV NS Q
Sbjct: 301 SDIGGMKETQEMLDFCAKHNITSDVEVIRMDQINTAMERLAKSDVRYRFVIDVANSLSQ 359
|
Source: Populus tomentosa Species: Populus tomentosa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797914|ref|XP_002866841.1| hypothetical protein ARALYDRAFT_912392 [Arabidopsis lyrata subsp. lyrata] gi|297312677|gb|EFH43100.1| hypothetical protein ARALYDRAFT_912392 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/356 (77%), Positives = 314/356 (88%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETEHP K GW ARD +G SPFHFSRR+ G +DVT+KILFCG+CH+DLH +N+
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG T YP+VPGHEIVG TKVG NV+KFKEGD+VGVGV+ SCQ CESC Q LENYCP M
Sbjct: 61 WGYTYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVIAGSCQSCESCDQDLENYCPQM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
TYN+I DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGM
Sbjct: 121 SFTYNAIASDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TE GKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS+S KKE EAI+ LGAD+FLV+SDP K
Sbjct: 181 TEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSKKEEEAINHLGADSFLVTSDPQK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDT+SAVH+L PLLGLLKVNGKL+ +GLPEKPLE+P+F LV R++VGG
Sbjct: 241 MKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S+VGG+KETQEMLDFCAKHNI ADIEL++MD+IN+AMERLAKSDV+YRFVIDV NS
Sbjct: 301 SDVGGLKETQEMLDFCAKHNITADIELIKMDEINSAMERLAKSDVRYRFVIDVANS 356
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22475166|gb|AAM95578.1| putative sinapyl alcohol dehydrogenase [Populus tremula x Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/359 (76%), Positives = 312/359 (86%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
M++SPE EH KA GW A+D++G SPFHFSRR+ G +DVTIKIL+CG+CHSDLH A+NE
Sbjct: 1 MSRSPEEEHQHKAFGWTAKDSSGVLSPFHFSRRDNGVEDVTIKILYCGVCHSDLHAAKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG VTK+G+NV KFK D+VGVGV+V SC+ CE C Q ENYCP M
Sbjct: 61 WGFSRYPLVPGHEIVGIVTKIGSNVKKFKVDDQVGVGVMVNSCKSCEYCDQDSENYCPKM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TYN+ + DGTKTYGGYSD IVVDQH+VL PD+MP D APLLCAGITVYSPMKYYGM
Sbjct: 121 IFTYNAQNYDGTKTYGGYSDTIVVDQHFVLHIPDSMPADGAAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLG+ GLGGLGHVAVKIGKAFGLKVTVIS+S +KE EA+ +LGAD+FLVSSDP K
Sbjct: 181 TEPGKHLGIVGLGGLGHVAVKIGKAFGLKVTVISSSSRKEREALDRLGADSFLVSSDPEK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA GTMDYIIDTVSAVH+LAPLL LLK NGKLVT+GLPEKPLE+PIF LV R+LVGG
Sbjct: 241 MKAAFGTMDYIIDTVSAVHALAPLLSLLKTNGKLVTLGLPEKPLELPIFPLVLGRKLVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
S++GGMKETQEMLDFCAKHNI AD+E++RMDQINTAM+RLAKSDV+YRFVIDV NS Q
Sbjct: 301 SDIGGMKETQEMLDFCAKHNIIADVEVIRMDQINTAMDRLAKSDVRYRFVIDVANSLSQ 359
|
Source: Populus tremula x Populus tremuloides Species: Populus tremula x Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235022|ref|NP_195643.1| putative cinnamyl alcohol dehydrogenase 9 [Arabidopsis thaliana] gi|148887169|sp|P42734.2|CADH9_ARATH RecName: Full=Probable cinnamyl alcohol dehydrogenase 9; Short=AtCAD9 gi|13877595|gb|AAK43875.1|AF370498_1 cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis thaliana] gi|4914445|emb|CAB43648.1| cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis thaliana] gi|7270917|emb|CAB80596.1| cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis thaliana] gi|17978765|gb|AAL47376.1| cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis thaliana] gi|31880031|gb|AAP59429.1| putative alcohol dehydrogenase [Arabidopsis thaliana] gi|332661656|gb|AEE87056.1| putative cinnamyl alcohol dehydrogenase 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 273/356 (76%), Positives = 312/356 (87%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETEHP K GW ARD +G SPFHFSRR+ G +DVT+KILFCG+CH+DLH +N+
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG TKVG NV+KFKEGD+VGVGV+ SCQ CESC Q LENYCP M
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
TYN+I DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGM
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TE GKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS+S K EAI+ LGAD+FLV++DP K
Sbjct: 181 TEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDT+SAVH+L PLLGLLKVNGKL+ +GLPEKPLE+P+F LV R++VGG
Sbjct: 241 MKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S+VGGMKETQEMLDFCAKHNI ADIEL++MD+INTAMERLAKSDV+YRFVIDV NS
Sbjct: 301 SDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVIDVANS 356
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21592964|gb|AAM64913.1| cinnamyl-alcohol dehydrogenase CAD1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/356 (76%), Positives = 312/356 (87%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETEHP K GW ARD +G SPFHFSRR+ G +DVT+KILFCG+CH+DLH +N+
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG TKVG NV+KFKEGD+VGVGV+ SCQ CESC Q LENYCP M
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
TYN+I DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGM
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TE GKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS+S K EAI+ LGAD+FLV++DP K
Sbjct: 181 TEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDT+SAVH+L PLLGLLKVNGKL+ +GLPEKPLE+P+F LV R++VGG
Sbjct: 241 MKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S+VGGMKETQEMLDFCAKHNI ADIEL++MD+INTAMERLAKSDV+YRFVI+V NS
Sbjct: 301 SDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVINVANS 356
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 359 | ||||||
| TAIR|locus:2136278 | 360 | CAD9 "cinnamyl alcohol dehydro | 0.991 | 0.988 | 0.679 | 3.8e-133 | |
| TAIR|locus:2052516 | 376 | CAD2 "cinnamyl alcohol dehydro | 0.966 | 0.922 | 0.633 | 8.5e-120 | |
| TAIR|locus:2052494 | 375 | CAD3 "cinnamyl alcohol dehydro | 0.966 | 0.925 | 0.626 | 7.7e-119 | |
| TAIR|locus:2005528 | 359 | ELI3-2 "elicitor-activated gen | 0.963 | 0.963 | 0.592 | 1.6e-109 | |
| TAIR|locus:2005527 | 357 | ELI3-1 "elicitor-activated gen | 0.963 | 0.969 | 0.572 | 1.1e-105 | |
| TAIR|locus:2120968 | 363 | CAD6 "cinnamyl alcohol dehydro | 0.983 | 0.972 | 0.535 | 4.1e-104 | |
| UNIPROTKB|Q0JA75 | 379 | CAD7 "Cinnamyl alcohol dehydro | 0.986 | 0.934 | 0.520 | 2.6e-102 | |
| TAIR|locus:2090704 | 365 | ATCAD4 [Arabidopsis thaliana ( | 0.969 | 0.953 | 0.448 | 3.1e-83 | |
| TAIR|locus:2124311 | 357 | CAD5 "cinnamyl alcohol dehydro | 0.977 | 0.983 | 0.450 | 3.9e-83 | |
| UNIPROTKB|O24562 | 367 | CAD "Probable cinnamyl alcohol | 0.969 | 0.948 | 0.44 | 3.2e-81 |
| TAIR|locus:2136278 CAD9 "cinnamyl alcohol dehydrogenase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 242/356 (67%), Positives = 279/356 (78%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPETEHP K GW ARD +G SPFHFSRR+ G +DVT+KILFCG+CH+DLH +N+
Sbjct: 1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKND 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG TKVG NV+KFKEGD+VGVGV+ SCQ CESC Q LENYCP M
Sbjct: 61 WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
TYN+I DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGM
Sbjct: 121 SFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TE IGKAFGLKVTVIS+S K EAI+ LGAD+FLV++DP K
Sbjct: 181 TEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDT+SAVH+L P PEKPLE+P+F LV R++VGG
Sbjct: 241 MKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S+VGGMKETQEMLDFCAKHNI ADIEL++MD+INTAMERLAKSDV+YRFVIDV NS
Sbjct: 301 SDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVIDVANS 356
|
|
| TAIR|locus:2052516 CAD2 "cinnamyl alcohol dehydrogenase homolog 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 221/349 (63%), Positives = 262/349 (75%)
Query: 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG 71
KA GWAA D +G SPFHFSRRE G +DVT+KILFCG+CHSDLH +N WG + YPI+PG
Sbjct: 6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPG 65
Query: 72 HEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDG 131
HEIVG TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS DG
Sbjct: 66 HEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDG 125
Query: 132 T-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPXXXXXX 189
T + GGYSD+IVVD +VL PD +P D+GAPLLCAGITVYSPMKYYGMT E
Sbjct: 126 TSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGV 185
Query: 190 XXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249
IGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D K+K A+GTMD
Sbjct: 186 NGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMD 245
Query: 250 YIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNVGGMKET 309
+IIDTVSA H+L P PEKPL++PIF+LV R++VGGS +GGMKET
Sbjct: 246 FIIDTVSAEHALLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKET 305
Query: 310 QEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
QEML+FCAKH I +DIEL++M IN+AM+RLAKSDV+YRFVIDV NS L
Sbjct: 306 QEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSLL 354
|
|
| TAIR|locus:2052494 CAD3 "cinnamyl alcohol dehydrogenase homolog 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 218/348 (62%), Positives = 259/348 (74%)
Query: 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG 71
+A GWAA D +G SPFHFSRRE G +DVT+KILFCG+CHSDLH +N WG + YPI+PG
Sbjct: 6 RAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPG 65
Query: 72 HEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDG 131
HEIVG TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS DG
Sbjct: 66 HEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDG 125
Query: 132 TKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPXXXXXXX 190
T+ GGYSD+IVVD +VL PD +P D+GAPLLCAGITVYSPMKYYGMT E
Sbjct: 126 TRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVN 185
Query: 191 XXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
IGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D K+K A+GTMD+
Sbjct: 186 GLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDF 245
Query: 251 IIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
IIDTVSA H+L P EKPL++PIF LV R++VGGS +GGMKETQ
Sbjct: 246 IIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQ 305
Query: 311 EMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
EML+FCAKH I +DIEL++M IN+AM+RL KSDV+YRFVIDV NS L
Sbjct: 306 EMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSLL 353
|
|
| TAIR|locus:2005528 ELI3-2 "elicitor-activated gene 3-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 205/346 (59%), Positives = 248/346 (71%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
++A G AA+DN+G SPF F+RRETG DV K+LFCGICHSDLH +NEWG++ YP+VP
Sbjct: 7 KEAFGLAAKDNSGVLSPFSFTRRETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVP 66
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHEIVG VT+VG V+KFK G+KVGVG LV+SC C+SC +G+ENYCP I TY D
Sbjct: 67 GHEIVGVVTEVGAKVTKFKTGEKVGVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYD 126
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXX 190
T TYGGYSD +V ++ +V+R PDN+PLDA APLLCAGITVYSPMKY+G+ +P
Sbjct: 127 NTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVV 186
Query: 191 XXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
KA G KVTVISTS KK EAI++LGADAFLVS DP ++K AMGTMD
Sbjct: 187 GLGGLGHVGVKFAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDG 246
Query: 251 IIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
IIDTVSA HSL P PEKPLE+P+ L+ R++V GS +GG+KETQ
Sbjct: 247 IIDTVSATHSLLPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQ 306
Query: 311 EMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
EM+D KHNI ADIEL+ D +NTAMERL K+DV+YRFVIDV N+
Sbjct: 307 EMIDMAGKHNITADIELISADYVNTAMERLEKADVRYRFVIDVANT 352
|
|
| TAIR|locus:2005527 ELI3-1 "elicitor-activated gene 3-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 198/346 (57%), Positives = 242/346 (69%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
++A G AA+D +G SPF FSRR TG DV K+LFCGICH+DL A+NEWG+T YP+VP
Sbjct: 7 KEAFGLAAKDESGILSPFSFSRRATGEKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVP 66
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHEIVG VT+VG V KF GDKVGVG + SC+ C+SC G ENYCP MILT + + D
Sbjct: 67 GHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFD 126
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXX 190
T T+GGYSD +V + +++R PDN+PLD APLLCAG+TVYSPMKY+G+ +P
Sbjct: 127 DTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVV 186
Query: 191 XXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
KA G KVTVISTS +K EA+++LGADAFLVS DP ++K AMGTMD
Sbjct: 187 GLGGLGHVAVKFAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDG 246
Query: 251 IIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
IIDTVSA H L P P +PLE+P+F L+ R++V GS VGG+KETQ
Sbjct: 247 IIDTVSATHPLLPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQ 306
Query: 311 EMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
EM+D KHNI ADIEL+ D +NTAMERLAK+DVKYRFVIDV N+
Sbjct: 307 EMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRFVIDVANT 352
|
|
| TAIR|locus:2120968 CAD6 "cinnamyl alcohol dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 189/353 (53%), Positives = 247/353 (69%)
Query: 4 SPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV 63
S E E +A GWAARD++G SPF FSRR+TG ++V +K+L+CGICHSDLHC +NEW
Sbjct: 5 SGEKEQSVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHS 64
Query: 64 TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT 123
+ YP+VPGHEI+G V+++GN VSKF GDKVGVG +V SC+ CESC++ ENYC I T
Sbjct: 65 SIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIAT 124
Query: 124 YNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 183
YN + DGT YGGYSD IVVD+ Y ++ P +PL + APLLCAGI++YSPMKY+G+T P
Sbjct: 125 YNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGP 184
Query: 184 XXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKA 243
KAFG KVTV+S++ K +A+ LGAD FLVS+D ++KA
Sbjct: 185 DKHVGIVGLGGLGHIGVRFAKAFGTKVTVVSSTTGKSKDALDTLGADGFLVSTDEDQMKA 244
Query: 244 AMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNV 303
AMGTMD IIDTVSA HS++P EKP ++ F+L+ R+ + GS +
Sbjct: 245 AMGTMDGIIDTVSASHSISPLIGLLKSNGKLVLLGATEKPFDISAFSLILGRKSIAGSGI 304
Query: 304 GGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
GGM+ETQEM+DF A+H I A+IE++ MD +NTAM+RLAK DV+YRFVID+ N+
Sbjct: 305 GGMQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNT 357
|
|
| UNIPROTKB|Q0JA75 CAD7 "Cinnamyl alcohol dehydrogenase 7" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
Identities = 189/363 (52%), Positives = 254/363 (69%)
Query: 3 KSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG 62
++P +H +KA+G AA D++G +P SRR+TG DDV IK+L+CGICHSDLH +NEW
Sbjct: 13 QAPPPQHTRKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWR 72
Query: 63 VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPN-MI 121
YP+V GHEI G VT+VG NV++FK GD+VGVG +V +C CESC+ G ENYC ++
Sbjct: 73 NAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVV 132
Query: 122 LTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN--------MPLDAGAPLLCAGITVYS 173
TYNS+DRDGT+TYGGYSD +VV Q +V+RFP + +PLD+GAPLLCAG+TVY+
Sbjct: 133 FTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYA 192
Query: 174 PMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFL 233
PM+ +G+ E +AFG++VTVISTSP K EA+ +LGAD F+
Sbjct: 193 PMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFI 252
Query: 234 VSSDPAKVKAAMGTMDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVG 293
VS++ +++KAAMGTM II+T SA S+ PEKPL++P FALVG
Sbjct: 253 VSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVG 312
Query: 294 ARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353
+++ GS +G + ETQEM+DF A+H +AADIEL+ D++NTAMERLAK DV+YRFV+D+
Sbjct: 313 GGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDI 372
Query: 354 GNS 356
GN+
Sbjct: 373 GNT 375
|
|
| TAIR|locus:2090704 ATCAD4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 156/348 (44%), Positives = 224/348 (64%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
+KA+GWAARD +G SP+ ++ R TGADDV IK++ CGICH+D+H +N+ G++NYP+VP
Sbjct: 9 KKALGWAARDPSGVLSPYSYTLRSTGADDVYIKVICCGICHTDIHQIKNDLGMSNYPMVP 68
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHE+VG V +VG++VSKF GD VGVGV+V C C+ C LE YC I +YN + D
Sbjct: 69 GHEVVGEVLEVGSDVSKFTVGDVVGVGVVVGCCGSCKPCSSELEQYCNKRIWSYNDVYTD 128
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXX 190
G T GG++D ++V+Q +V++ P+ M ++ APLLCAG+TVYSP+ ++G+
Sbjct: 129 GKPTQGGFADTMIVNQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGIL 188
Query: 191 XXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
I KA G VTVIS+S KK+ EAI LGAD ++VSSDPA+++ ++DY
Sbjct: 189 GLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSSDPAEMQRLADSLDY 248
Query: 251 IIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
IIDTV H L P PL+ ++ R+++ GS +G +KET+
Sbjct: 249 IIDTVPVFHPLDPYLACLKLDGKLILMGVINTPLQFVTPLVILGRKVISGSFIGSIKETE 308
Query: 311 EMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
E+L FC + + + IE V++D++N A ERL K+DV+YRFV+DV S L
Sbjct: 309 EVLAFCKEKGLTSTIETVKIDELNIAFERLRKNDVRYRFVVDVAGSNL 356
|
|
| TAIR|locus:2124311 CAD5 "cinnamyl alcohol dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 158/351 (45%), Positives = 223/351 (63%)
Query: 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYP 67
E +K GWAARD +G SP+ ++ RETG +DV I+I+ CGICH+DLH +N+ G++NYP
Sbjct: 5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYP 64
Query: 68 IVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSI 127
+VPGHE+VG V +VG++VSKF GD VGVG LV C C C++ LE YCP I +YN +
Sbjct: 65 MVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDV 124
Query: 128 DRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXX 187
+G T GG++ VV Q +V++ P+ M ++ APLLCAG+TVYSP+ ++G+ +P
Sbjct: 125 YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRG 184
Query: 188 XXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT 247
I KA G VTVIS+S KK EA+ LGAD +++ SD AK+ +
Sbjct: 185 GILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADS 244
Query: 248 MDYIIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLEVPIFALVGARRLVGGSNVGGMK 307
+DY+IDTV H+L P PL+ L+ R+++ GS +G MK
Sbjct: 245 LDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMK 304
Query: 308 ETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
ET+EML+FC + +++ IE+V+MD +NTA ERL K+DV+YRFV+DV S L
Sbjct: 305 ETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSNL 355
|
|
| UNIPROTKB|O24562 CAD "Probable cinnamyl alcohol dehydrogenase" [Zea mays (taxid:4577)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 154/350 (44%), Positives = 220/350 (62%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
+K +GWAARD TG SP+ ++ R TG +DV +K+L+CGICH+D+H A+N G + YP+VP
Sbjct: 8 RKVVGWAARDATGHLSPYSYTLRNTGPEDVVVKVLYCGICHTDIHQAKNHLGASKYPMVP 67
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHE+VG V +VG V+K+ GD VGVGV+V C++C C+ +E YC I +YN + D
Sbjct: 68 GHEVVGEVVEVGPEVAKYGVGDVVGVGVIVGCCRECSPCKANVEQYCNKKIWSYNDVYTD 127
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXX 190
G T GG++ +VVDQ +V++ P + + APLLCAG+TVYSP+K++G+T P
Sbjct: 128 GRPTQGGFASTMVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGIL 187
Query: 191 XXXXXXXXXXXIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
+ KA G VTVIS+S KK +EA+ LGADA+LVSSD A + AA ++DY
Sbjct: 188 GLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDY 247
Query: 251 IIDTVSAVHSLAPXXXXXXXXXXXXXXXXPEKPLE-VPIFALVGARRLVGGSNVGGMKET 309
IIDTV H L P +PL V ++G R+ + GS +G + ET
Sbjct: 248 IIDTVPVHHPLEPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLG-RKAITGSFIGSIDET 306
Query: 310 QEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKLQ 359
E+L FC + + IE+V+M +N A+ERL ++DV+YRFV+DV S ++
Sbjct: 307 AEVLQFCVDKGLTSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGSNVE 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0A4X1 | ADHC_MYCBO | 1, ., 1, ., 1, ., 2 | 0.5132 | 0.9359 | 0.9710 | yes | no |
| P0A4X0 | ADHC_MYCTU | 1, ., 1, ., 1, ., 2 | 0.5132 | 0.9359 | 0.9710 | yes | no |
| P42754 | MTDH_PETCR | 1, ., 1, ., 1, ., 2, 5, 5 | 0.6506 | 0.9247 | 0.9851 | N/A | no |
| C0SPA5 | ADHA_BACSU | 1, ., 1, ., 1, ., - | 0.4878 | 0.9108 | 0.9369 | yes | no |
| Q08350 | CADH7_PICAB | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5413 | 0.9777 | 0.9831 | N/A | no |
| P42495 | CADH1_ARACO | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5198 | 0.9777 | 0.975 | N/A | no |
| P30360 | CADH2_TOBAC | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5229 | 0.9693 | 0.9747 | N/A | no |
| P42734 | CADH9_ARATH | 1, ., 1, ., 1, ., 1, 9, 5 | 0.7668 | 0.9916 | 0.9888 | yes | no |
| O82035 | CADH2_PICAB | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5413 | 0.9777 | 0.9831 | N/A | no |
| P93257 | MTDH_MESCR | 1, ., 1, ., 1, ., 2, 5, 5 | 0.6610 | 0.9916 | 0.9861 | N/A | no |
| P31657 | CADH_POPDE | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5098 | 0.9832 | 0.9887 | N/A | no |
| P0CH37 | ADHC2_MYCS2 | 1, ., 1, ., 1, ., 2 | 0.5436 | 0.9470 | 0.9742 | yes | no |
| P30359 | CADH1_TOBAC | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5185 | 0.9777 | 0.9831 | N/A | no |
| Q43138 | MTDH3_STYHU | 1, ., 1, ., 1, ., 2, 5, 5 | 0.5938 | 0.9860 | 0.9752 | N/A | no |
| Q2KNL6 | GEDH1_OCIBA | 1, ., 1, ., 1, ., 1, 8, 3 | 0.6573 | 0.9916 | 0.9888 | N/A | no |
| Q43137 | MTDH1_STYHU | 1, ., 1, ., 1, ., 2, 5, 5 | 0.7623 | 0.9582 | 0.9717 | N/A | no |
| P0CH36 | ADHC1_MYCS2 | 1, ., 1, ., 1, ., 2 | 0.5436 | 0.9470 | 0.9742 | yes | no |
| P41637 | CADH_PINTA | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5441 | 0.9777 | 0.9831 | N/A | no |
| Q9ZRF1 | MTDH_FRAAN | 1, ., 1, ., 1, ., 2, 5, 5 | 0.6581 | 0.9777 | 0.9777 | N/A | no |
| O82515 | MTDH_MEDSA | 1, ., 1, ., 1, ., 2, 5, 5 | 0.7752 | 0.9888 | 0.9888 | N/A | no |
| Q6V4H0 | 10HGO_CATRO | 1, ., 1, ., 1, ., 3, 2, 4 | 0.6713 | 0.9916 | 0.9888 | N/A | no |
| Q9SJ25 | CADH2_ARATH | 1, ., 1, ., 1, ., 1, 9, 5 | 0.7085 | 0.9693 | 0.9255 | no | no |
| Q40976 | CADH_PINRA | 1, ., 1, ., 1, ., 1, 9, 5 | 0.5464 | 0.9832 | 0.9887 | N/A | no |
| Q38707 | MTDH_APIGR | 1, ., 1, ., 1, ., 2, 5, 5 | 0.6404 | 0.9916 | 0.9753 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 359 | |||
| PLN02586 | 360 | PLN02586, PLN02586, probable cinnamyl alcohol dehy | 0.0 | |
| PLN02178 | 375 | PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | 0.0 | |
| cd05283 | 337 | cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA | 0.0 | |
| PLN02514 | 357 | PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | 1e-157 | |
| cd08245 | 330 | cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD | 1e-132 | |
| COG1064 | 339 | COG1064, AdhP, Zn-dependent alcohol dehydrogenases | 1e-127 | |
| cd08297 | 341 | cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA | 3e-82 | |
| cd08296 | 333 | cd08296, CAD_like, Cinnamyl alcohol dehydrogenases | 1e-73 | |
| cd08298 | 329 | cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA | 2e-63 | |
| cd05284 | 340 | cd05284, arabinose_DH_like, D-arabinose dehydrogen | 6e-57 | |
| cd08254 | 338 | cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e | 1e-55 | |
| cd08240 | 350 | cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa | 3e-54 | |
| cd05188 | 271 | cd05188, MDR, Medium chain reductase/dehydrogenase | 9e-53 | |
| cd08259 | 332 | cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD | 1e-47 | |
| COG1063 | 350 | COG1063, Tdh, Threonine dehydrogenase and related | 2e-41 | |
| PRK09422 | 338 | PRK09422, PRK09422, ethanol-active dehydrogenase/a | 2e-40 | |
| cd08263 | 367 | cd08263, Zn_ADH10, Alcohol dehydrogenases of the M | 2e-39 | |
| COG1062 | 366 | COG1062, AdhC, Zn-dependent alcohol dehydrogenases | 5e-39 | |
| cd08260 | 345 | cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD | 6e-38 | |
| cd08236 | 343 | cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog | 2e-36 | |
| PRK13771 | 334 | PRK13771, PRK13771, putative alcohol dehydrogenase | 4e-36 | |
| cd08279 | 363 | cd08279, Zn_ADH_class_III, Class III alcohol dehyd | 7e-36 | |
| pfam08240 | 108 | pfam08240, ADH_N, Alcohol dehydrogenase GroES-like | 6e-34 | |
| cd08258 | 306 | cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD | 3e-33 | |
| cd08233 | 351 | cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio | 1e-32 | |
| cd08234 | 334 | cd08234, threonine_DH_like, L-threonine dehydrogen | 3e-32 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 1e-31 | |
| cd08278 | 365 | cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro | 7e-31 | |
| TIGR02822 | 329 | TIGR02822, adh_fam_2, zinc-binding alcohol dehydro | 2e-30 | |
| cd08281 | 371 | cd08281, liver_ADH_like1, Zinc-dependent alcohol d | 2e-30 | |
| cd08264 | 325 | cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t | 3e-30 | |
| cd08277 | 365 | cd08277, liver_alcohol_DH_like, Liver alcohol dehy | 5e-30 | |
| cd08239 | 339 | cd08239, THR_DH_like, L-threonine dehydrogenase (T | 1e-29 | |
| cd05289 | 309 | cd05289, MDR_like_2, alcohol dehydrogenase and qui | 3e-29 | |
| cd08235 | 343 | cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas | 4e-29 | |
| cd08231 | 361 | cd08231, MDR_TM0436_like, Hypothetical enzyme TM04 | 2e-28 | |
| cd08261 | 337 | cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD | 9e-28 | |
| TIGR03989 | 369 | TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa | 2e-27 | |
| cd08232 | 339 | cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | 3e-26 | |
| cd05279 | 365 | cd05279, Zn_ADH1, Liver alcohol dehydrogenase and | 2e-24 | |
| cd08241 | 323 | cd08241, QOR1, Quinone oxidoreductase (QOR) | 2e-24 | |
| cd05278 | 347 | cd05278, FDH_like, Formaldehyde dehydrogenases | 9e-24 | |
| cd08266 | 342 | cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t | 1e-23 | |
| cd05285 | 343 | cd05285, sorbitol_DH, Sorbitol dehydrogenase | 3e-23 | |
| PLN02702 | 364 | PLN02702, PLN02702, L-idonate 5-dehydrogenase | 1e-22 | |
| cd08267 | 319 | cd08267, MDR1, Medium chain dehydrogenases/reducta | 2e-22 | |
| PRK10309 | 347 | PRK10309, PRK10309, galactitol-1-phosphate dehydro | 5e-21 | |
| TIGR00692 | 340 | TIGR00692, tdh, L-threonine 3-dehydrogenase | 8e-21 | |
| cd05281 | 341 | cd05281, TDH, Threonine dehydrogenase | 2e-20 | |
| cd08268 | 328 | cd08268, MDR2, Medium chain dehydrogenases/reducta | 6e-19 | |
| cd08301 | 369 | cd08301, alcohol_DH_plants, Plant alcohol dehydrog | 8e-19 | |
| cd08265 | 384 | cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD | 1e-18 | |
| cd08299 | 373 | cd08299, alcohol_DH_class_I_II_IV, class I, II, IV | 3e-18 | |
| TIGR03201 | 349 | TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1 | 3e-18 | |
| cd08249 | 339 | cd08249, enoyl_reductase_like, enoyl_reductase_lik | 6e-18 | |
| cd08242 | 319 | cd08242, MDR_like, Medium chain dehydrogenases/red | 8e-18 | |
| cd05276 | 323 | cd05276, p53_inducible_oxidoreductase, PIG3 p53-in | 2e-17 | |
| cd08253 | 325 | cd08253, zeta_crystallin, Zeta-crystallin with NAD | 3e-17 | |
| cd08284 | 344 | cd08284, FDH_like_2, Glutathione-dependent formald | 3e-17 | |
| pfam00107 | 131 | pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | 9e-17 | |
| PRK05396 | 341 | PRK05396, tdh, L-threonine 3-dehydrogenase; Valida | 1e-16 | |
| TIGR03451 | 358 | TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi | 3e-16 | |
| cd08273 | 331 | cd08273, MDR8, Medium chain dehydrogenases/reducta | 3e-16 | |
| cd08271 | 325 | cd08271, MDR5, Medium chain dehydrogenases/reducta | 5e-16 | |
| PRK09880 | 343 | PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro | 1e-15 | |
| TIGR02824 | 325 | TIGR02824, quinone_pig3, putative NAD(P)H quinone | 2e-15 | |
| cd08275 | 337 | cd08275, MDR3, Medium chain dehydrogenases/reducta | 4e-15 | |
| cd08230 | 355 | cd08230, glucose_DH, Glucose dehydrogenase | 5e-15 | |
| cd05282 | 323 | cd05282, ETR_like, 2-enoyl thioester reductase-lik | 6e-15 | |
| cd08276 | 336 | cd08276, MDR7, Medium chain dehydrogenases/reducta | 9e-15 | |
| PRK10083 | 339 | PRK10083, PRK10083, putative oxidoreductase; Provi | 1e-14 | |
| cd08248 | 350 | cd08248, RTN4I1, Human Reticulon 4 Interacting Pro | 2e-14 | |
| TIGR02818 | 368 | TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat | 4e-14 | |
| TIGR02823 | 323 | TIGR02823, oxido_YhdH, putative quinone oxidoreduc | 4e-14 | |
| cd08262 | 341 | cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD | 5e-14 | |
| cd08300 | 368 | cd08300, alcohol_DH_class_III, class III alcohol d | 8e-14 | |
| cd05286 | 320 | cd05286, QOR2, Quinone oxidoreductase (QOR) | 2e-13 | |
| cd08289 | 326 | cd08289, MDR_yhfp_like, Yhfp putative quinone oxid | 2e-13 | |
| cd08269 | 312 | cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD | 3e-13 | |
| PTZ00354 | 334 | PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi | 5e-13 | |
| cd08286 | 345 | cd08286, FDH_like_ADH2, formaldehyde dehydrogenase | 1e-12 | |
| cd08282 | 375 | cd08282, PFDH_like, Pseudomonas putida aldehyde-di | 2e-12 | |
| cd05195 | 293 | cd05195, enoyl_red, enoyl reductase of polyketide | 5e-12 | |
| PLN02740 | 381 | PLN02740, PLN02740, Alcohol dehydrogenase-like | 6e-12 | |
| TIGR03366 | 280 | TIGR03366, HpnZ_proposed, putative phosphonate cat | 7e-12 | |
| cd08256 | 350 | cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD | 9e-12 | |
| cd08243 | 320 | cd08243, quinone_oxidoreductase_like_1, Quinone ox | 1e-11 | |
| cd08272 | 326 | cd08272, MDR6, Medium chain dehydrogenases/reducta | 2e-11 | |
| cd08285 | 351 | cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd | 2e-11 | |
| cd08251 | 303 | cd08251, polyketide_synthase, polyketide synthase | 1e-10 | |
| cd08283 | 386 | cd08283, FDH_like_1, Glutathione-dependent formald | 2e-10 | |
| cd05280 | 325 | cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ | 2e-10 | |
| cd08287 | 345 | cd08287, FDH_like_ADH3, formaldehyde dehydrogenase | 9e-10 | |
| smart00829 | 287 | smart00829, PKS_ER, Enoylreductase | 3e-09 | |
| cd08252 | 336 | cd08252, AL_MDR, Arginate lyase and other MDR fami | 6e-09 | |
| cd08255 | 277 | cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro | 1e-08 | |
| TIGR02819 | 393 | TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas | 2e-08 | |
| cd08274 | 350 | cd08274, MDR9, Medium chain dehydrogenases/reducta | 5e-08 | |
| cd08250 | 329 | cd08250, Mgc45594_like, Mgc45594 gene product and | 9e-08 | |
| cd08290 | 341 | cd08290, ETR, 2-enoyl thioester reductase (ETR) | 2e-07 | |
| PLN02827 | 378 | PLN02827, PLN02827, Alcohol dehydrogenase-like | 2e-07 | |
| cd08244 | 324 | cd08244, MDR_enoyl_red, Possible enoyl reductase | 5e-07 | |
| cd08246 | 393 | cd08246, crotonyl_coA_red, crotonyl-CoA reductase | 5e-07 | |
| TIGR02817 | 336 | TIGR02817, adh_fam_1, zinc-binding alcohol dehydro | 3e-06 | |
| COG2130 | 340 | COG2130, COG2130, Putative NADP-dependent oxidored | 1e-05 | |
| PRK10754 | 327 | PRK10754, PRK10754, quinone oxidoreductase, NADPH- | 3e-05 | |
| cd08291 | 324 | cd08291, ETR_like_1, 2-enoyl thioester reductase ( | 3e-05 | |
| cd08292 | 324 | cd08292, ETR_like_2, 2-enoyl thioester reductase ( | 7e-05 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 1e-04 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 1e-04 | |
| TIGR01751 | 398 | TIGR01751, crot-CoA-red, crotonyl-CoA reductase | 2e-04 | |
| cd08247 | 352 | cd08247, AST1_like, AST1 is a cytoplasmic protein | 2e-04 | |
| TIGR01202 | 308 | TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacter | 2e-04 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 3e-04 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 3e-04 | |
| cd08288 | 324 | cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu | 3e-04 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 4e-04 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 4e-04 | |
| pfam13602 | 129 | pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas | 5e-04 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 5e-04 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 0.001 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 0.002 | |
| cd05288 | 329 | cd05288, PGDH, Prostaglandin dehydrogenases | 0.003 |
| >gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 692 bits (1788), Expect = 0.0
Identities = 292/356 (82%), Positives = 323/356 (90%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
MAKSPE EHPQKA GWAARD +G SPFHFSRRE G +DVT+KIL+CG+CHSDLH +NE
Sbjct: 1 MAKSPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNE 60
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG T YPIVPGHEIVG VTK+G NV KFKEGD+VGVGV+V SC+ CESC Q LENYCP M
Sbjct: 61 WGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKM 120
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
I TYNSI DGTK YGGYSD+IVVDQH+VLRFPDN+PLDAGAPLLCAGITVYSPMKYYGM
Sbjct: 121 IFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGM 180
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS+S KE EAI++LGAD+FLVS+DP K
Sbjct: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEK 240
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
+KAA+GTMDYIIDTVSAVH+L PLLGLLKVNGKL+T+GLPEKPLE+PIF LV R+LVGG
Sbjct: 241 MKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGG 300
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
S++GG+KETQEMLDFCAKHNI ADIEL+RMD+INTAMERLAKSDV+YRFVIDV NS
Sbjct: 301 SDIGGIKETQEMLDFCAKHNITADIELIRMDEINTAMERLAKSDVRYRFVIDVANS 356
|
Length = 360 |
| >gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 546 bits (1408), Expect = 0.0
Identities = 247/348 (70%), Positives = 290/348 (83%), Gaps = 1/348 (0%)
Query: 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG 71
KA GWAA D +G SPFHFSRRE G +DVT+KILFCG+CHSDLH +N WG + YPI+PG
Sbjct: 6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPG 65
Query: 72 HEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDG 131
HEIVG TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS DG
Sbjct: 66 HEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDG 125
Query: 132 TKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPGKHLGVA 190
T+ GGYSD+IVVD +VL PD +P D+GAPLLCAGITVYSPMKYYGMT E GK LGV
Sbjct: 126 TRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVN 185
Query: 191 GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
GLGGLGH+AVKIGKAFGL+VTVIS S +KE EAI +LGAD+FLV++D K+K A+GTMD+
Sbjct: 186 GLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDF 245
Query: 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
IIDTVSA H+L PL LLKV+GKLV +GLPEKPL++PIF LV R++VGGS +GGMKETQ
Sbjct: 246 IIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQ 305
Query: 311 EMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
EML+FCAKH I +DIEL++M IN+AM+RLAKSDV+YRFVIDV NS L
Sbjct: 306 EMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSLL 353
|
Length = 375 |
| >gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 544 bits (1404), Expect = 0.0
Identities = 197/338 (58%), Positives = 239/338 (70%), Gaps = 2/338 (0%)
Query: 15 GWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEI 74
G+AARD +G PF F RR G DDV IKI +CG+CHSDLH RNEWG T YP+VPGHEI
Sbjct: 2 GYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEI 61
Query: 75 VGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKT 134
VG V VG+ V+KFK GD+VGVG V SC CE C+ G E YCP ++TYN DGT T
Sbjct: 62 VGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTIT 121
Query: 135 YGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG 194
GGY+D IVVD+ +V + P+ + A APLLCAGITVYSP+K G+ PGK +GV G+GG
Sbjct: 122 QGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVG-PGKRVGVVGIGG 180
Query: 195 LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDT 254
LGH+AVK KA G +VT S SP K+ +A+ KLGAD F+ + DP +K A G++D IIDT
Sbjct: 181 LGHLAVKFAKALGAEVTAFSRSPSKKEDAL-KLGADEFIATKDPEAMKKAAGSLDLIIDT 239
Query: 255 VSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLD 314
VSA H L P L LLK G LV VG PE+PL VP F L+ R+ V GS +GG KETQEMLD
Sbjct: 240 VSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLD 299
Query: 315 FCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVID 352
F A+H I +E++ MD IN A+ERL K DV+YRFV+D
Sbjct: 300 FAAEHGIKPWVEVIPMDGINEALERLEKGDVRYRFVLD 337
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-157
Identities = 181/355 (50%), Positives = 253/355 (71%), Gaps = 2/355 (0%)
Query: 4 SPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV 63
S E E +K GWAARD +G SP+ ++ R+TG +DV IK+++CGICH+DLH +N+ G+
Sbjct: 3 SLEAE--KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM 60
Query: 64 TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT 123
+NYP+VPGHE+VG V +VG++VSKF GD VGVGV+V C +C C+ LE YC I +
Sbjct: 61 SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWS 120
Query: 124 YNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP 183
YN + DG T GG++ +VVDQ +V++ P+ M + APLLCAG+TVYSP+ ++G+ +
Sbjct: 121 YNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQS 180
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKA 243
G G+ GLGG+GH+ VKI KA G VTVIS+S KK EA+ LGAD +LVSSD A+++
Sbjct: 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQE 240
Query: 244 AMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNV 303
A ++DYIIDTV H L P L LLK++GKL+ +G+ PL+ L+ R+++ GS +
Sbjct: 241 AADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFI 300
Query: 304 GGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
G MKET+EML+FC + + + IE+V+MD +NTA ERL K+DV+YRFV+DV S L
Sbjct: 301 GSMKETEEMLEFCKEKGLTSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGSNL 355
|
Length = 357 |
| >gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-132
Identities = 148/330 (44%), Positives = 194/330 (58%), Gaps = 10/330 (3%)
Query: 23 GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVG 82
G P E G +V IKI CG+CH+DLH A +WG + YP+VPGHEIVG V +VG
Sbjct: 10 GPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVG 69
Query: 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLI 142
V K GD+VGVG LV SC +CE C++GLEN C + T G T GGY++ +
Sbjct: 70 AGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNT-------GYTTQGGYAEYM 122
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
V D Y + PD +PL APLLCAGITVYS ++ G PG+ + V G+GGLGH+AV+
Sbjct: 123 VADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAGP-RPGERVAVLGIGGLGHLAVQY 181
Query: 203 GKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262
+A G + I+ SP K A KLGAD + S +AA G D I+ TV + +
Sbjct: 182 ARAMGFETVAITRSPDKRELAR-KLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAE 240
Query: 263 PLLGLLKVNGKLVTVGLPEKPLEVP-IFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321
LG L+ G++V VGLPE P P IF L+ R+ + GS GG + QE LDF A+ +
Sbjct: 241 AALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKV 300
Query: 322 AADIELVRMDQINTAMERLAKSDVKYRFVI 351
IE +DQ N A ER+ K DV++RFV+
Sbjct: 301 KPMIETFPLDQANEAYERMEKGDVRFRFVL 330
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330 |
| >gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 368 bits (946), Expect = e-127
Identities = 144/347 (41%), Positives = 190/347 (54%), Gaps = 15/347 (4%)
Query: 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIV 69
+ E G +V IK+ CG+CH+DLH A+ +W V P++
Sbjct: 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLI 60
Query: 70 PGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPN-MILTYNSID 128
PGHEIVGTV +VG V+ K GD+VGVG LV SC +CE C+ G EN CPN I Y
Sbjct: 61 PGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYT--- 117
Query: 129 RDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLG 188
T GGY++ +VV YV++ P+ + L APLLCAGIT Y +K + PGK +
Sbjct: 118 -----TDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVK-PGKWVA 171
Query: 189 VAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 248
V G GGLGH+AV+ KA G +V I+ S +K A KLGAD + SSD ++A
Sbjct: 172 VVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELA-KKLGADHVINSSDSDALEAVKEIA 230
Query: 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGSNVGGM 306
D IIDTV +L P L L+ G LV VGLP +P F L+ + GS VG
Sbjct: 231 DAIIDTVGP-ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTR 289
Query: 307 KETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352
+ +E LDF A+ I +I E + +D+IN A ER+ K V+ R VID
Sbjct: 290 ADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVID 336
|
Length = 339 |
| >gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 3e-82
Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 17/326 (5%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G +V +K+ G+CH+DLH A +W V P++ GHE G V VG VS K GD+V
Sbjct: 25 GPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRV 84
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
GV L +C KCE C+ G E CPN + DGT +++ + D YV PD
Sbjct: 85 GVKWLYDACGKCEYCRTGDETLCPNQKNS--GYTVDGT-----FAEYAIADARYVTPIPD 137
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVI 213
+ + APLLCAG+TVY +K G +PG + ++G GG LGH+ V+ KA GL+V I
Sbjct: 138 GLSFEQAAPLLCAGVTVYKALKKAG-LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAI 196
Query: 214 STSPKKESEAISKLGADAFL---VSSDPAKVKAAMGTM--DYIIDTVSAVHSLAPLLGLL 268
+K E +LGADAF+ S D VK G ++ T + + L L
Sbjct: 197 DVGDEKL-ELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYL 255
Query: 269 KVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL 327
+ G LV VGLP + + F LV + GS VG ++ QE L+F A+ + I++
Sbjct: 256 RPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKPHIQV 315
Query: 328 VRMDQINTAMERLAKSDVKYRFVIDV 353
V ++ +N E++ + + R V+D
Sbjct: 316 VPLEDLNEVFEKMEEGKIAGRVVVDF 341
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 1e-73
Identities = 106/336 (31%), Positives = 172/336 (51%), Gaps = 16/336 (4%)
Query: 22 TGTFSPFHFSRRET---GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTV 78
T P R+ G +V IK+ CG+CHSD +YP VPGHE+VG +
Sbjct: 7 TEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRI 66
Query: 79 TKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGY 138
VG VS++K GD+VGVG C C++C++G +C N + RD GGY
Sbjct: 67 DAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCEN--GKVTGVTRD-----GGY 119
Query: 139 SDLIVVDQHYVLRFPDNM-PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
++ ++ + R PD++ +A APLLCAG+T ++ ++ G +PG + V G+GGLGH
Sbjct: 120 AEYMLAPAEALARIPDDLDAAEA-APLLCAGVTTFNALRNSG-AKPGDLVAVQGIGGLGH 177
Query: 198 VAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSS--DPAKVKAAMGTMDYIIDTV 255
+AV+ G + IS K A KLGA ++ +S D A+ +G I+ T
Sbjct: 178 LAVQYAAKMGFRTVAISRGSDKADLA-RKLGAHHYIDTSKEDVAEALQELGGAKLILATA 236
Query: 256 SAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDF 315
+++ L+G L GKL+ +G +P+ V L+ R+ + G G ++++ L F
Sbjct: 237 PNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKF 296
Query: 316 CAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVI 351
A H + +E +++ N A +R+ ++R V+
Sbjct: 297 SALHGVRPMVETFPLEKANEAYDRMMSGKARFRVVL 332
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333 |
| >gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 2e-63
Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 18/325 (5%)
Query: 29 HFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88
E G +V IK+ CG+C +DLH + P++PGHEIVG V VG V++F
Sbjct: 21 EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80
Query: 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148
GD+VGV L ++C +C C+ G EN C N T ++D GGY++ +V D+ +
Sbjct: 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVD-------GGYAEYMVADERF 133
Query: 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL 208
P++ + APLLCAGI Y +K G+ +PG+ LG+ G G H+A++I + G
Sbjct: 134 AYPIPEDYDDEEAAPLLCAGIIGYRALKLAGL-KPGQRLGLYGFGASAHLALQIARYQGA 192
Query: 209 KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDT--VSAVHSLAPLLG 266
+V + S + + A +LGAD S D +D I V A+ A L
Sbjct: 193 EVFAFTRSGEHQELAR-ELGADWAGDSDDLPPEP-----LDAAIIFAPVGALVPAA--LR 244
Query: 267 LLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIE 326
+K G++V G+ + + L+ + + ++ +E L A+ I ++E
Sbjct: 245 AVKKGGRVVLAGIHMSDIPAFDYELLWGEKTIRSVANLTRQDGEEFLKLAAEIPIKPEVE 304
Query: 327 LVRMDQINTAMERLAKSDVKYRFVI 351
+++ N A++ L + ++ V+
Sbjct: 305 TYPLEEANEALQDLKEGRIRGAAVL 329
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329 |
| >gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 6e-57
Identities = 101/328 (30%), Positives = 152/328 (46%), Gaps = 21/328 (6%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTN---YPIVPGHEIVGTVTKVGNNVSKFKE 90
E G V +++ G+CHSDLH WG P GHE G V +VG+ V KE
Sbjct: 22 EPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKE 81
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD V V C C C++G ENYC N + I D GG+++ ++V ++
Sbjct: 82 GDPVVV-HPPWGCGTCRYCRRGEENYCEN--ARFPGIGTD-----GGFAEYLLVPSRRLV 133
Query: 151 RFPDNMPLDAGAPLLCAGITVYSPMK-YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK 209
+ P + APL AG+T Y +K +PG + V G+GGLGH+AV+I +A
Sbjct: 134 KLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALT-P 192
Query: 210 VTVISTSPKKES-EAISKLGADAFLVSSDPAKVKAAMGT-----MDYIIDTVSAVHSLAP 263
TVI+ +E+ + +LGAD ++++ V+ D +ID V + +LA
Sbjct: 193 ATVIAVDRSEEALKLAERLGADH-VLNASDDVVEEVRELTGGRGADAVIDFVGSDETLAL 251
Query: 264 LLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA 323
LL G+ V VG +P LV V GS G E E++ +
Sbjct: 252 AAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKVKV 310
Query: 324 DIELVRMDQINTAMERLAKSDVKYRFVI 351
+I ++ N A++RL + V R V+
Sbjct: 311 EITKFPLEDANEALDRLREGRVTGRAVL 338
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340 |
| >gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 1e-55
Identities = 113/325 (34%), Positives = 156/325 (48%), Gaps = 16/325 (4%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNE-WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
E G +V +K+ G+CHSDLH +T P+ GHEI GTV +VG V+ FK GD
Sbjct: 23 EPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKVGD 82
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+V V V C C C++G N C N + ID GG+++ IVV ++
Sbjct: 83 RVAV-PAVIPCGACALCRRGRGNLCLNQGMPGLGID-------GGFAEYIVVPARALVPV 134
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTV 212
PD +P A A +T Y + G +PG+ + V GLGGLG AV+I KA G V
Sbjct: 135 PDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIA 194
Query: 213 ISTSPKKESEAISKLGADAFL----VSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLL 268
+ +K A +LGAD L S K G D I D V + +
Sbjct: 195 VDIKEEKLELA-KELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAV 253
Query: 269 KVNGKLVTVGLPEKPLEVPIFALVGARRL-VGGSNVGGMKETQEMLDFCAKHNIAADIEL 327
K G++V VGL L V + L+ AR L + GS G ++ E+LD AK + +E
Sbjct: 254 KPGGRIVVVGLGRDKLTVDLSDLI-ARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQVET 312
Query: 328 VRMDQINTAMERLAKSDVKYRFVID 352
+D+I +ERL K VK R V+
Sbjct: 313 RPLDEIPEVLERLHKGKVKGRVVLV 337
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338 |
| >gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 3e-54
Identities = 100/335 (29%), Positives = 149/335 (44%), Gaps = 33/335 (9%)
Query: 38 DDVTIKILFCGICHSDLHCARNEW-------------GVTNYPIVPGHEIVGTVTKVGNN 84
+V +K+ CG+CHSDLH + GV P+V GHEIVG V VG +
Sbjct: 26 TEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVK-LPLVLGHEIVGEVVAVGPD 84
Query: 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVV 144
+ K GDKV V + C +C C G EN C G GGY++ ++V
Sbjct: 85 AADVKVGDKVLVYPWI-GCGECPVCLAGDENLCAKGR-------ALGIFQDGGYAEYVIV 136
Query: 145 DQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGK 204
L P + A L C+G+T YS +K + + + G GGLG +A+ + K
Sbjct: 137 PHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLK 196
Query: 205 AFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIIDTVSAVH 259
A G + V+ K EA GAD + SDP K + G +D +ID V+
Sbjct: 197 ALGPANIIVVDIDEAKL-EAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSA 255
Query: 260 SLAPLLGLLKVNGKLVTVGL--PEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCA 317
+ + +L GKLV VGL E L +P+ L + GS VG ++E +E++
Sbjct: 256 TASLAFDILAKGGKLVLVGLFGGEATLPLPLLPL--RALTIQGSYVGSLEELRELVALAK 313
Query: 318 KHNIAA-DIELVRMDQINTAMERLAKSDVKYRFVI 351
+ + + +N A++ L V R V+
Sbjct: 314 AGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVL 348
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350 |
| >gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 9e-53
Identities = 81/283 (28%), Positives = 131/283 (46%), Gaps = 19/283 (6%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
+V +++ G+C +DLH R + P++ GHE G V +VG V+ K GD+V V
Sbjct: 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
+ C CE C+ CP + G GG+++ +VV ++ PD +
Sbjct: 61 PNL-GCGTCELCR----ELCPGGGI-------LGEGLDGGFAEYVVVPADNLVPLPDGLS 108
Query: 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217
L+ A L T Y ++ G+ +PG + V G GG+G +A ++ KA G +V V S
Sbjct: 109 LEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168
Query: 218 KKESEAISKLGADAFLVSSDPAKVKAAMGT----MDYIIDTVSAVHSLAPLLGLLKVNGK 273
+K E +LGAD + + + T D +ID V +LA L LL+ G+
Sbjct: 169 EK-LELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGR 227
Query: 274 LVTVGLPEKPLEVPIFALVGARRL-VGGSNVGGMKETQEMLDF 315
+V VG + + + L + GS G ++ +E LD
Sbjct: 228 IVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDL 270
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271 |
| >gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 1e-47
Identities = 92/319 (28%), Positives = 154/319 (48%), Gaps = 12/319 (3%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
G +V IK+ G+C+ DL + + YP++ GHEIVGTV +VG V +FK GD+V
Sbjct: 24 GPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGDRVI 83
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
+ C KCE C G EN C N G + GG+++ + V + +++ PDN
Sbjct: 84 L-YYYIPCGKCEYCLSGEENLCRNRAEY-------GEEVDGGFAEYVKVPERSLVKLPDN 135
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+ ++ A C T +K G+ + L GG+G A+++ KA G +V ++
Sbjct: 136 VSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR 195
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLV 275
SP+K + + +LGAD + S ++ +G D +I+ V + ++ L L G+LV
Sbjct: 196 SPEK-LKILKELGADYVIDGSKFSEDVKKLGGADVVIELVGS-PTIEESLRSLNKGGRLV 253
Query: 276 TVG-LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIE-LVRMDQI 333
+G + P + L+ + GS + +E L + I I+ +V ++ I
Sbjct: 254 LIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKPVIDRVVSLEDI 313
Query: 334 NTAMERLAKSDVKYRFVID 352
N A+E L V R V+
Sbjct: 314 NEALEDLKSGKVVGRIVLK 332
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332 |
| >gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 2e-41
Identities = 86/301 (28%), Positives = 126/301 (41%), Gaps = 19/301 (6%)
Query: 36 GADDVTIKILFCGICHSDLHCAR-NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G DV I++ GIC SDLH R E V I+ GHE VG V +VG V FK GD+V
Sbjct: 24 GPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVGDRV 82
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY-VLRFP 153
V C C C+ G N C N + G GG+++ + V + + + P
Sbjct: 83 -VVEPNIPCGHCRYCRAGEYNLCENPGFYGYA--GLGGGIDGGFAEYVRVPADFNLAKLP 139
Query: 154 DNMPLDAGA--PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KV 210
D + +A A L ++ PG + V G G +G +A+ + K G V
Sbjct: 140 DGIDEEAAALTEPLATAYHGHA---ERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVV 196
Query: 211 TVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTM----DYIIDTVSAVHSLAPLL 265
V+ SP++ A GAD S D A + T D +I+ V + +L L
Sbjct: 197 IVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQAL 256
Query: 266 GLLKVNGKLVTVGLPEKPLEVPIFALVGAR--RLVGGSNVGGMKETQEMLDFCAKHNIAA 323
L+ G +V VG+ LV ++ L G G ++ + LD A I
Sbjct: 257 EALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDP 316
Query: 324 D 324
+
Sbjct: 317 E 317
|
Length = 350 |
| >gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 2e-40
Identities = 91/327 (27%), Positives = 161/327 (49%), Gaps = 19/327 (5%)
Query: 33 RETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
R + +K+ +CG+CH+DLH A ++G I+ GHE +G V +VG V+ K GD
Sbjct: 21 RPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGRIL-GHEGIGIVKEVGPGVTSLKVGD 79
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+V + C CE C G E C ++ ++D GG ++ +V Y ++
Sbjct: 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVD-------GGMAEQCIVTADYAVKV 132
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGK-AFGLKVT 211
P+ + + + CAG+T Y +K G +PG+ + + G GGLG++A++ K F KV
Sbjct: 133 PEGLDPAQASSITCAGVTTYKAIKVSG-IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVI 191
Query: 212 VISTSPKKESEAISKLGADAFLVSSD----PAKVKAAMGTMDYIIDTVSAVHSLA--PLL 265
+ + K + A ++GAD + S ++ G + V+AV A +
Sbjct: 192 AVDINDDKLALA-KEVGADLTINSKRVEDVAKIIQEKTGGAHAAV--VTAVAKAAFNQAV 248
Query: 266 GLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI 325
++ G++V VGLP + +++ I LV V GS VG ++ +E F A+ + +
Sbjct: 249 DAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVPKV 308
Query: 326 ELVRMDQINTAMERLAKSDVKYRFVID 352
+L ++ IN + + + ++ R VID
Sbjct: 309 QLRPLEDINDIFDEMEQGKIQGRMVID 335
|
Length = 338 |
| >gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-39
Identities = 98/349 (28%), Positives = 159/349 (45%), Gaps = 37/349 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV---SKFKEGD 92
++ I++ CG+CHSDLH + E P V GHEI G V +VG NV GD
Sbjct: 24 KEGEILIRVAACGVCHSDLHVLKGELPFPP-PFVLGHEISGEVVEVGPNVENPYGLSVGD 82
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID------------RDGTKTY----G 136
+V VG + C KC C +G EN C + YN + DG Y G
Sbjct: 83 RV-VGSFIMPCGKCRYCARGKENLCED-FFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMG 140
Query: 137 GYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLG 196
G ++ VV + P+++ A L CAG T Y +K+ PG+ + V G+GG+G
Sbjct: 141 GLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVG 200
Query: 197 HVAVKIGKAFGLKVTV-ISTSPKKESEAISKLGADAFLVSSD---PAKVKAAMGTM--DY 250
A+++ KAFG + + +K ++A +LGA + ++ A ++ G D
Sbjct: 201 SSAIQLAKAFGASPIIAVDVRDEKLAKA-KELGATHTVNAAKEDAVAAIREITGGRGVDV 259
Query: 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGSNVGGMKE 308
+++ + + L +++ G+ V VGL E+PI LV + GS G
Sbjct: 260 VVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGS-YGARPR 318
Query: 309 TQ--EMLDFCA--KHNIAADIELV-RMDQINTAMERLAKSDVKYRFVID 352
E++ A K + A + ++++IN A E L K + R +++
Sbjct: 319 QDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367 |
| >gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 5e-39
Identities = 82/339 (24%), Positives = 133/339 (39%), Gaps = 34/339 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V ++I G+CH+D H + +P V GHE G V VG V+ K GD V
Sbjct: 26 RAGEVLVRITATGVCHTDAH-TLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHV- 83
Query: 96 VGVLVASCQKCESCQQGLENYCPN---------MILTYNSIDRDGTKTY-----GGYSDL 141
+ + C +C+ C G N C M + +G Y +++
Sbjct: 84 ILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEY 143
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
VV + +++ + PL+ L C T + EPG + V GLGG+G A++
Sbjct: 144 TVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQ 203
Query: 202 IGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM-----GTMDYIIDTV 255
KA G ++ + +P+K A K GA F+ + V A+ G DY + V
Sbjct: 204 GAKAAGAGRIIAVDINPEKLELA-KKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262
Query: 256 SAVHSLAPLLGLLKVNGKLVTVGLPE--KPLEVPIFALVGARRLVG---GSNVGGMKETQ 310
V + L G V +G+ + + F LV R G G +
Sbjct: 263 GNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPR-SDIP 321
Query: 311 EMLDFCAKHNIAADIELV----RMDQINTAMERLAKSDV 345
++D + D LV ++ IN A + + +
Sbjct: 322 RLVDLYMAGKLPLD-RLVTHTIPLEDINEAFDLMHEGKS 359
|
Length = 366 |
| >gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 6e-38
Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 16/252 (6%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
D V +++ CG+C SD H + P VPGHE G V +VG +VS+++ GD+V
Sbjct: 24 PPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVT 83
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQ--HYVLRFP 153
V V C C C+ G N C + + G G +++ + V + ++R P
Sbjct: 84 VP-FVLGCGTCPYCRAGDSNVCEHQVQP-------GFTHPGSFAEYVAVPRADVNLVRLP 135
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVI 213
D++ A L C T + + + +PG+ + V G GG+G AV I A G +V +
Sbjct: 136 DDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAV 195
Query: 214 STSPKKESEAISKLGADAFLVSSDPAKVKAAM-----GTMDYIIDTVSAVHSLAPLLGLL 268
K A +LGA A + +S+ V AA+ G +D + + + L
Sbjct: 196 DIDDDKLELA-RELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASL 254
Query: 269 KVNGKLVTVGLP 280
+ G+ V VGL
Sbjct: 255 RKRGRHVQVGLT 266
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345 |
| >gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-36
Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 23/266 (8%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
E G +V +K+ CGIC SD+ + P+V GHE GTV +VG+ V GD+
Sbjct: 21 EPGPGEVLVKVKACGICGSDIPRYLGTG-AYHPPLVLGHEFSGTVEEVGSGVDDLAVGDR 79
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V V L+ C KCE C++G + C N Y+ I G++ G +++ + V +++ P
Sbjct: 80 VAVNPLL-PCGKCEYCKKGEYSLCSN----YDYI---GSRRDGAFAEYVSVPARNLIKIP 131
Query: 154 DNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK- 209
D++ + A P A V G + V G G +G +A++ K G K
Sbjct: 132 DHVDYEEAAMIEPAAVALHAVRL-----AGITLGDTVVVIGAGTIGLLAIQWLKILGAKR 186
Query: 210 VTVISTSPKKESEAISKLGADAFLVSS--DPAKVKAAMG--TMDYIIDTVSAVHSLAPLL 265
V + +K +LGAD + D KV+ D +I+ + ++ L
Sbjct: 187 VIAVDIDDEK-LAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQAL 245
Query: 266 GLLKVNGKLVTVGLPEKPLEVPIFAL 291
L + GK+V VG+P + + A
Sbjct: 246 ALARPGGKVVLVGIPYGDVTLSEEAF 271
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343 |
| >gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-36
Identities = 89/325 (27%), Positives = 157/325 (48%), Gaps = 16/325 (4%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ G D+V IK+ + G+C+ DL + + YP++ GHE+VGTV +VG NV FK GD+
Sbjct: 22 KPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGDR 81
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V +L A CE C+ G E YC N + +D G +++ V +++ P
Sbjct: 82 V-ASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELD-------GFFAEYAKVKVTSLVKVP 133
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTV 212
N+ + + C VY ++ G+ G+ + V G GG+G A+++ KA G KV
Sbjct: 134 PNVSDEGAVIVPCVTGMVYRGLRRAGVK-KGETVLVTGAGGGVGIHAIQVAKALGAKVIA 192
Query: 213 ISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNG 272
+++S K ++ +SK AD +V S ++ +G D +I+TV +L L L + G
Sbjct: 193 VTSSESK-AKIVSKY-ADYVIVGSKFSEEVKKIGGADIVIETV-GTPTLEESLRSLNMGG 249
Query: 273 KLVTVG--LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL-VR 329
K++ +G P + + ++ + G ++ +E L A+ I I V
Sbjct: 250 KIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKPVIGAEVS 309
Query: 330 MDQINTAMERLAKSDVKYRFVIDVG 354
+ +I+ A+E L + ++
Sbjct: 310 LSEIDKALEELKDKSRIGKILVKPS 334
|
Length = 334 |
| >gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 7e-36
Identities = 92/357 (25%), Positives = 139/357 (38%), Gaps = 59/357 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
G +V ++I G+CHSDLH + P V GHE G V +VG V+ K GD V
Sbjct: 24 GPGEVLVRIAAAGLCHSDLHVVTGDLPAP-LPAVLGHEGAGVVEEVGPGVTGVKPGDHV- 81
Query: 96 VGVLVASCQKCESCQQGLENYCPN--------MILTYNSIDRDGTKTY-----GGYSDLI 142
V + +C C C +G N C + DG G +++
Sbjct: 82 VLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYT 141
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
VV + V++ D++PLD A L C T + PG + V G GG+G A++
Sbjct: 142 VVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQG 201
Query: 203 GKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM----GTM-DYIIDTVS 256
+ G ++ + P+K A + GA + +S+ V+A G DY + V
Sbjct: 202 ARIAGASRIIAVDPVPEKLELA-RRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVG 260
Query: 257 AVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFAL---VGARRLVGGSNVGGMKETQEML 313
++ L + + G V VG+ V + AL + +RL GS G
Sbjct: 261 RAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQ-GSLYGSA------- 312
Query: 314 DFCAKHNIAADI---------------ELV----RMDQINTAMERLAKSDVKYRFVI 351
N DI ELV +D+IN A + + R VI
Sbjct: 313 ------NPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENA-RGVI 362
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363 |
| >gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 6e-34
Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96
+V +++ GIC SDLH R E P++ GHE G V +VG V+ K GD+V V
Sbjct: 1 PGEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60
Query: 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLR 151
L+ C KC +C++G EN CPN G GG+++ +VV ++
Sbjct: 61 YPLI-PCGKCAACREGRENLCPNGKFL-------GVHLDGGFAEYVVVPARNLVP 107
|
This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108 |
| >gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-33
Identities = 81/263 (30%), Positives = 127/263 (48%), Gaps = 20/263 (7%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
E G +V IK+ GIC SDLH + ++ P+V GHE GT+ +VG +V +K GD+
Sbjct: 23 EPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVGDR 82
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V ++C +C C++G N CP+ D GG+++ ++V + + P
Sbjct: 83 VVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQAD-------GGFAEYVLVPEESLHELP 135
Query: 154 DNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKV 210
+N+ L+A A PL A V PG + V G G +G +A ++ K G V
Sbjct: 136 ENLSLEAAALTEPLAVAVHAVAERSGI----RPGDTVVVFGPGPIGLLAAQVAKLQGATV 191
Query: 211 TVISTSPKKESEAISK-LGADAFLVSS-DPAKVKAAM---GTMDYIIDTVSAVHSLAPLL 265
V+ T + ++K LGADA D A++ + D +I+ AV +L L
Sbjct: 192 VVVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITDGDGADVVIECSGAVPALEQAL 251
Query: 266 GLLKVNGKLVTVGLPEKPLEVPI 288
LL+ G++V VG+ PL I
Sbjct: 252 ELLRKGGRIVQVGIF-GPLAASI 273
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306 |
| >gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-32
Identities = 83/293 (28%), Positives = 124/293 (42%), Gaps = 43/293 (14%)
Query: 34 ETGADDVTIKILFCGICHSDLH---------CARNEWGVTN--YPIVPGHEIVGTVTKVG 82
+V IK+ +CGIC SDLH +T P+ GHE G V +VG
Sbjct: 21 PVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVG 80
Query: 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT-YNSIDRDGTKTYGGYSDL 141
+ V+ FK GD+V V + C C +C++GL N C ++ GG+++
Sbjct: 81 SGVTGFKVGDRVVVEPTI-KCGTCGACKRGLYNLCDSLGFIGLGGGG-------GGFAEY 132
Query: 142 IVVDQHYVLRFPDNMPLDAGA---PLLCA--GITVYSPMKYYGMTEPGKHLGVAGLGGLG 196
+VV ++V + PDN+PL+ A PL A + S K PG V G G +G
Sbjct: 133 VVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRR-SGFK------PGDTALVLGAGPIG 185
Query: 197 HVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--------GTM 248
+ + KA G ++S + E +LGA L DP +V G +
Sbjct: 186 LLTILALKAAGASKIIVSEPSEARRELAEELGATIVL---DPTEVDVVAEVRKLTGGGGV 242
Query: 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGS 301
D D +L + L+ G V V + EKP+ LV + + GS
Sbjct: 243 DVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGS 295
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351 |
| >gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-32
Identities = 80/266 (30%), Positives = 122/266 (45%), Gaps = 28/266 (10%)
Query: 33 RETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
E G D+V IK+ CGIC +DLH E+G P+VPGHE G V VG+ V+ FK GD
Sbjct: 20 PEPGPDEVLIKVAACGICGTDLHIYEGEFG-AAPPLVPGHEFAGVVVAVGSKVTGFKVGD 78
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+V V + C +C C++G N C N+ + R+ GG+++ +VV V +
Sbjct: 79 RVAVDPNI-YCGECFYCRRGRPNLCENLTAV--GVTRN-----GGFAEYVVVPAKQVYKI 130
Query: 153 PDNMPLDAGA---PLLCA--GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG 207
PDN+ + A PL CA G+ + +PG + V G G +G + ++ K G
Sbjct: 131 PDNLSFEEAALAEPLSCAVHGLDLLGI-------KPGDSVLVFGAGPIGLLLAQLLKLNG 183
Query: 208 L-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM----DYIIDTVSAVHSLA 262
+VTV + +K E KLGA V +A D +I+ +L
Sbjct: 184 ASRVTVAEPNEEKL-ELAKKLGATET-VDPSREDPEAQKEDNPYGFDVVIEATGVPKTLE 241
Query: 263 PLLGLLKVNGKLVTVGLPEKPLEVPI 288
+ + G ++ G+ V I
Sbjct: 242 QAIEYARRGGTVLVFGVYAPDARVSI 267
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-31
Identities = 70/295 (23%), Positives = 121/295 (41%), Gaps = 45/295 (15%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTN-YPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G +V +++ G+ D+ + P +PG E G V VG+ V+ FK GD+V
Sbjct: 26 GPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRV 85
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
V GGY++ +VV +++ PD
Sbjct: 86 AALGGVGR--------------------------------DGGYAEYVVVPADWLVPLPD 113
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVI 213
+ + A L AG+T + + +PG+ + V GG+G A+++ KA G V +
Sbjct: 114 GLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV 173
Query: 214 STSPKKESEAISKLGADAFLVSSDP---AKVKAAMGTM--DYIIDTVSAVHSLAPLLGLL 268
+S +K E + +LGAD + + +V+ G D ++DTV + A L L
Sbjct: 174 VSSSEKL-ELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGG-DTFAASLAAL 231
Query: 269 KVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVG--GMKETQEMLDFCAKH 319
G+LV++G P+ + + L+G R + G +G + E L
Sbjct: 232 APGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDL 286
|
Length = 326 |
| >gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 7e-31
Identities = 90/304 (29%), Positives = 130/304 (42%), Gaps = 54/304 (17%)
Query: 33 RETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
+ D+V ++I+ GICH+DL R+ T P V GHE G V VG+ V+ K GD
Sbjct: 23 DDPRPDEVLVRIVATGICHTDLVV-RDGGLPTPLPAVLGHEGAGVVEAVGSAVTGLKPGD 81
Query: 93 KVGVGVLV-ASCQKCESCQQGLENYCPNMI-LTYNSIDRDGTKTY---GG---------- 137
V VL ASC +C +C G YC N L ++ DG+ G
Sbjct: 82 HV---VLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQ 138
Query: 138 --YSDLIVVDQHYVLRFPDNMPLDAGAPLLC-----AGITVYSPMKYYGMTEPGKHLGVA 190
++ VV + V++ ++PL+ APL C AG V + +K PG + V
Sbjct: 139 SSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAG-AVLNVLK----PRPGSSIAVF 193
Query: 191 GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK-LGADAFLVSSD---PAKVKAAMG 246
G G +G AV K G T+I+ ++K LGA + + A ++ G
Sbjct: 194 GAGAVGLAAVMAAKIAGCT-TIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITG 252
Query: 247 T-MDYIIDTV-------SAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI---FALVGAR 295
+DY +DT AV +LAP G L VG P EV + LV +
Sbjct: 253 GGVDYALDTTGVPAVIEQAVDALAPR-------GTLALVGAPPPGAEVTLDVNDLLVSGK 305
Query: 296 RLVG 299
+ G
Sbjct: 306 TIRG 309
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365 |
| >gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 2e-30
Identities = 86/323 (26%), Positives = 133/323 (41%), Gaps = 26/323 (8%)
Query: 27 PFHFSRRET---GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGN 83
P F R G ++ +++ CG+C +DLH + + V + PGHE+VG V G
Sbjct: 14 PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGA 73
Query: 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIV 143
+ F GD+VG+ L +C C C++G EN CP Y D D GGY++
Sbjct: 74 DAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPAS--RYTGWDTD-----GGYAEYTT 126
Query: 144 VDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIG 203
V + R P APLLCAGI Y + + PG LG+ G GG H+ ++
Sbjct: 127 VPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLRASLP-PGGRLGLYGFGGSAHLTAQVA 185
Query: 204 KAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263
A G V V++ A++ LGA + + D +D I A + P
Sbjct: 186 LAQGATVHVMTRGAAARRLALA-LGAASAGGAYDTPPEP-----LDAAILFAPAGGLVPP 239
Query: 264 LLGLLKVNGKLVTVGL-----PEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318
L L G L G+ P + +F R + + +E L+ A+
Sbjct: 240 ALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADA----REFLELAAQ 295
Query: 319 HNIAADIELVRMDQINTAMERLA 341
H + + + + A+ L
Sbjct: 296 HGVRVTTHTYPLSEADRALRDLK 318
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329 |
| >gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 92/341 (26%), Positives = 144/341 (42%), Gaps = 30/341 (8%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
G +V +KI G+CHSDL + P+ GHE G V +VG V+ + G
Sbjct: 28 LDPPGPGEVLVKIAAAGLCHSDLSVINGD-RPRPLPMALGHEAAGVVVEVGEGVTDLEVG 86
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCP--------------NMILTYNSIDRDGTKTYGG 137
D V V V V SC C C +G C L + +
Sbjct: 87 DHV-VLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSA 145
Query: 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
+++ VV + V++ ++PL+ A CA +T + PG+ + V GLGG+G
Sbjct: 146 FAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGL 205
Query: 198 VAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVK----AAMGTMDYII 252
A+ A G +V + + K + A +LGA A + + DP V+ G +DY
Sbjct: 206 SALLGAVAAGASQVVAVDLNEDKLALA-RELGATATVNAGDPNAVEQVRELTGGGVDYAF 264
Query: 253 DTVSAVHSLAPLLGLLKVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
+ +V +L + + G VT GLP E L VP +LV R + GS +G +
Sbjct: 265 EMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRR 324
Query: 311 EM---LDFCAKHNIAADIEL---VRMDQINTAMERLAKSDV 345
++ L + D L + +D+IN +RLA +
Sbjct: 325 DIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEA 365
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371 |
| >gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-30
Identities = 79/293 (26%), Positives = 129/293 (44%), Gaps = 21/293 (7%)
Query: 30 FSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89
+ G +V I++ G+ D + N V P +PG E G V +VG++V K
Sbjct: 19 VKDPKPGPGEVLIRVKMAGVNPVDYN-VINAVKVKPMPHIPGAEFAGVVEEVGDHVKGVK 77
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
+GD+V V V C+ C G E C N G + GGY++ IVV + +
Sbjct: 78 KGDRVVVYNRVF-DGTCDMCLSGNEMLCRNG-------GIIGVVSNGGYAEYIVVPEKNL 129
Query: 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK 209
+ PD++ + A L A +T Y +K G+ + G G AV++ K G +
Sbjct: 130 FKIPDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAE 189
Query: 210 VTVISTSPKKESEAISKLGADAFLVSSDPA--KVKAAMGTMDYIIDTV-SAVHSLAPLLG 266
V +S + + + GAD +V D KVK D +I+++ S+ L+ L
Sbjct: 190 VIAVSR-----KDWLKEFGAD-EVVDYDEVEEKVKEITKMADVVINSLGSSFWDLS--LS 241
Query: 267 LLKVNGKLVTVG-LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318
+L G+LVT G L +++ + L + + GS G KE E++
Sbjct: 242 VLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIAKD 294
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-30
Identities = 97/345 (28%), Positives = 146/345 (42%), Gaps = 35/345 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A++V IK+L +CH+D+ A + T +P++ GHE G V VG V+ K GDKV
Sbjct: 26 KANEVRIKMLATSVCHTDIL-AIEGFKATLFPVILGHEGAGIVESVGEGVTNLKPGDKV- 83
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTK--TYGG-----------YSDLI 142
+ + + C +C +C+ G N C + + DGT T G +S
Sbjct: 84 IPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYT 143
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
VVD++YV + PL+ L C T Y EPG + V GLG +G A+
Sbjct: 144 VVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMG 203
Query: 203 GKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK----VKAAM--GTMDYIIDTV 255
K G ++ + + K +A + GA F+ D K V M G +DY +
Sbjct: 204 AKIAGASRIIGVDINEDKFEKA-KEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECT 262
Query: 256 SAVHSLAPLLGLLKVN-GKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVGGMK---ETQ 310
+ L K+ G V VG+P L + F L+ R GS GG K +
Sbjct: 263 GNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLILGRTW-KGSFFGGFKSRSDVP 321
Query: 311 EMLDFCAKHNIAADIELV----RMDQINTAMERLAKSDVKYRFVI 351
+++ D EL+ ++IN + L KS R VI
Sbjct: 322 KLVSKYMNKKFDLD-ELITHVLPFEEINKGFD-LMKSGECIRTVI 364
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 86/325 (26%), Positives = 145/325 (44%), Gaps = 22/325 (6%)
Query: 29 HFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYP-IVPGHEIVGTVTKVGNNVSK 87
F G +V +++ G+C SDLH + Y ++PGHE G V VG V+
Sbjct: 16 EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTH 75
Query: 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH 147
F+ GD+V V C C +C++G C + Y +RD GG+++ ++V +
Sbjct: 76 FRVGDRVMV-YHYVGCGACRNCRRGWMQLCTSKRAAY-GWNRD-----GGHAEYMLVPEK 128
Query: 148 YVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG 207
++ PD++ GA LLC T Y ++ G++ + V G G +G A+ + +A G
Sbjct: 129 TLIPLPDDLSFADGALLLCGIGTAYHALRRVGVS-GRDTVLVVGAGPVGLGALMLARALG 187
Query: 208 L-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT-----MDYIIDTVSAVHSL 261
V + SP++ A LGAD F+++S V+ D I+ +
Sbjct: 188 AEDVIGVDPSPERLELAK-ALGAD-FVINSGQDDVQEIRELTSGAGADVAIECSGNTAAR 245
Query: 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321
L ++ G+LV VG + L+ +R + GS + + +E +F A+H +
Sbjct: 246 RLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKL 305
Query: 322 AADIELV----RMDQINTAMERLAK 342
D LV +DQ A A+
Sbjct: 306 EVD-RLVTHRFGLDQAPEAYALFAQ 329
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-29
Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 44/324 (13%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNY---PIVPGHEIVGTVTKVGNNVSKFKE 90
E G +V +K+ G+ DL P++PGH++ G V VG V+ FK
Sbjct: 24 EPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKV 83
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD+V R G Y++ +VV +
Sbjct: 84 GDEV---------------------------FGMTPFTRGGA-----YAEYVVVPADELA 111
Query: 151 RFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLK 209
P N+ + A L AG+T + + G + G+ + + GG+G AV++ KA G +
Sbjct: 112 LKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGAR 171
Query: 210 VTVISTSPKKESEAISKLGADAFLVSSD-PAKVKAAMGTMDYIIDTVSAVHSLAPLLGLL 268
V S + + LGAD + + + AA G +D ++DTV +LA L L+
Sbjct: 172 VIAT-ASAANA-DFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGG-ETLARSLALV 228
Query: 269 KVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELV 328
K G+LV++ P + V A + + + E E+++ + ++ V
Sbjct: 229 KPGGRLVSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVE---AGKLRPVVDRV 285
Query: 329 R-MDQINTAMERLAKSDVKYRFVI 351
++ A ERL + + V+
Sbjct: 286 FPLEDAAEAHERLESGHARGKVVL 309
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309 |
| >gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-29
Identities = 79/269 (29%), Positives = 123/269 (45%), Gaps = 28/269 (10%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
E G +V +K+ CGIC +D+ R P + GHEI G + +VG+ V+ FK GD+
Sbjct: 21 EPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGDR 80
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVV-----DQHY 148
V V C +C C +G EN CPN N D GG+++ + V +
Sbjct: 81 VFV-APHVPCGECHYCLRGNENMCPNYKKFGNLYD-------GGFAEYVRVPAWAVKRGG 132
Query: 149 VLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205
VL+ PDN+ + A PL C + + G+ +PG + V G G +G + + KA
Sbjct: 133 VLKLPDNVSFEEAALVEPLAC----CINAQRKAGI-KPGDTVLVIGAGPIGLLHAMLAKA 187
Query: 206 FGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM----GTM-DYIIDTVSAVH 259
G KV V + + A KLGAD + +++ V+ G D +I +
Sbjct: 188 SGARKVIVSDLNEFRLEFA-KKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPE 246
Query: 260 SLAPLLGLLKVNGKLVTVGLPEKPLEVPI 288
+ A L L++ G+++ G K V I
Sbjct: 247 AQAQALELVRKGGRILFFGGLPKGSTVNI 275
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343 |
| >gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 81/332 (24%), Positives = 126/332 (37%), Gaps = 31/332 (9%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ V +++ G+C SD+H PI+ GHE VG V +G V+ G+
Sbjct: 22 DLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81
Query: 94 VGVGVLV-----ASCQKCESCQQGLENYCPNMILTYNSIDR--DGTKTYGGYSDLIVVDQ 146
+ VG V A C +C C G C N + D GGY++ I +
Sbjct: 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCEN--RKKYGHEASCDDPHLSGGYAEHIYLPP 139
Query: 147 H-YVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205
++R PDN+P + AP CA TV + + G G + V G G LG AV K
Sbjct: 140 GTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKL 199
Query: 206 FG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM--------DYIIDTVS 256
G +V VI SP++ E + GADA + + + D +I+
Sbjct: 200 AGARRVIVIDGSPER-LELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASG 258
Query: 257 AVHSLAPLLGLLKVNGKLVTVGL--PEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLD 314
++ L LL+ G V VG P + + +V + G + +
Sbjct: 259 HPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVR 318
Query: 315 FCAKHNIAADIELVRM-------DQINTAMER 339
F + + + IN A+E
Sbjct: 319 FLERT--QDRFPFAELVTHRYPLEDINEALEL 348
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361 |
| >gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-28
Identities = 76/272 (27%), Positives = 125/272 (45%), Gaps = 22/272 (8%)
Query: 26 SPFHFSRRET-----GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTK 80
P + GA +V +++ GIC SDLH +YP + GHE+ G V +
Sbjct: 8 KPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVE 67
Query: 81 VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSD 140
VG V+ K GD+V V SC +C +C++G N C N+ + + RD GG+++
Sbjct: 68 VGEGVAGLKVGDRV-VVDPYISCGECYACRKGRPNCCENLQVL--GVHRD-----GGFAE 119
Query: 141 LIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200
IVV +L P+ + LD A + I ++ G + V G G +G +
Sbjct: 120 YIVVPADALLV-PEGLSLDQAALVEPLAIGAHA--VRRAGVTAGDTVLVVGAGPIGLGVI 176
Query: 201 KIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD---PAKVKAAMG--TMDYIIDTV 255
++ KA G +V V+ ++ E +LGAD + D A+++ D +ID
Sbjct: 177 QVAKARGARVIVVDIDDERL-EFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT 235
Query: 256 SAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVP 287
S+ + L+ G++V VGL + P+ P
Sbjct: 236 GNPASMEEAVELVAHGGRVVLVGLSKGPVTFP 267
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 89/301 (29%), Positives = 130/301 (43%), Gaps = 37/301 (12%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ A +V +K++ G+CHSD H + + YPI+ GHE G VTKVG V+ K GD
Sbjct: 23 DPKAGEVLVKLVASGLCHSDEHLVTGDLPMPRYPILGGHEGAGVVTKVGPGVTGVKPGDH 82
Query: 94 VGVGVLVASCQKCESCQQGLENYCPN--MILTYNSIDRDGTKTY-------------GGY 138
V V + +C +C C GL+N C +LT + I DGT + G +
Sbjct: 83 V-VLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQIS-DGTYRFHADGQDVGQMCLLGTF 140
Query: 139 SDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHV 198
S+ VV + V++ D++PLD + C T + PG + V G+GG+G
Sbjct: 141 SEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADVRPGDTVVVMGIGGVGIN 200
Query: 199 AVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA---MGTM-DYIID 253
AV+ G KV + K +A+ K GA S + A G D I
Sbjct: 201 AVQGAAVAGARKVIAVDPVEFKREQAL-KFGATHAFASMEEAVQLVRELTNGQGADKTII 259
Query: 254 TVSAVHS--LAPLLGLLKVNGKLVTVGL--------PEKPLEVPIFA--LVGARRLVGGS 301
TV V +A L + G++V GL E+ + L G L GG+
Sbjct: 260 TVGEVDGEHIAEALSATRKGGRVVVTGLGPMADVDVKVNLFELTLLQKELQGT--LFGGA 317
Query: 302 N 302
N
Sbjct: 318 N 318
|
This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369 |
| >gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-26
Identities = 78/281 (27%), Positives = 119/281 (42%), Gaps = 42/281 (14%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNY----PIVPGHEIVGTVTKVGNNVSKFK 89
E G +V +++ GIC SDLH + G P+V GHE+ G V VG V+
Sbjct: 18 EPGPGEVRVRVAAGGICGSDLHYYQ-HGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLA 76
Query: 90 EGDKVGVGVLVAS--CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH 147
G +V V S C C+ C+ G N C NM + GG+ + +VVD
Sbjct: 77 PGQRVAVN---PSRPCGTCDYCRAGRPNLCLNM--RFLGSAMRFPHVQGGFREYLVVDAS 131
Query: 148 YVLRFPDNMPLDAGA---PL-LC------AGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
+ PD + L A PL + AG GK + V G G +G
Sbjct: 132 QCVPLPDGLSLRRAALAEPLAVALHAVNRAGDLA------------GKRVLVTGAGPIGA 179
Query: 198 VAVKIGKAFG---LKVTVISTSPKKESEAISKLGADAFL-VSSDP-AKVKAAMGTMDYII 252
+ V + G + T ++ +P +GAD + ++ DP A A G D +
Sbjct: 180 LVVAAARRAGAAEIVATDLADAP---LAVARAMGADETVNLARDPLAAYAADKGDFDVVF 236
Query: 253 DTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVG 293
+ A +LA L +++ G +V VG+ P+ +P+ ALV
Sbjct: 237 EASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVA 277
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339 |
| >gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 32/339 (9%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V IK++ G+CH+DLH + T P++ GHE G V +G V+ K GDKV
Sbjct: 24 KAGEVRIKVVATGVCHTDLH-VIDGKLPTPLPVILGHEGAGIVESIGPGVTTLKPGDKV- 81
Query: 96 VGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTY-------------GGYSDL 141
+ + C KC+ C N C + + DGT + +++
Sbjct: 82 IPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEY 141
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
VV + + + + PL+ + C T Y PG V GLGG+G +
Sbjct: 142 TVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIM 201
Query: 202 IGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK-VKAAM-----GTMDYIIDT 254
KA G ++ + + K +A +LGA + D K + + G +DY +
Sbjct: 202 GCKAAGASRIIAVDINKDKFEKA-KQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEV 260
Query: 255 VSAVHSLAPLLGLLKVN-GKLVTVGLPEKPLEVPI-FALVGARRLVGGSNVGGMKETQEM 312
+ + +L L ++ G V VG+P E + + R + G+ GG K +
Sbjct: 261 IGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFGGWKSKDSV 320
Query: 313 LDFCAKH---NIAADIELVR---MDQINTAMERLAKSDV 345
A + D + ++IN + + +
Sbjct: 321 PKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES 359
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365 |
| >gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 56/255 (21%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
+V I++ G+ DL + ++ V P VPG E+ G V VG V+ FK GD+V
Sbjct: 27 PGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRV- 85
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
VA GG+++ +VV V PD
Sbjct: 86 ----VALTG------------------------------QGGFAEEVVVPAAAVFPLPDG 111
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVIS 214
+ + A L T Y + +PG+ + V GG+G AV++ KA G +V +
Sbjct: 112 LSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAA 171
Query: 215 TSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTV------SAVHSLAP 263
+S +K LGAD + DP +VKA G +D + D V +++ SLA
Sbjct: 172 SSEEKL-ALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAW 230
Query: 264 LLGLLKVNGKLVTVG 278
G+L+ +G
Sbjct: 231 -------GGRLLVIG 238
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-24
Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 29/278 (10%)
Query: 35 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G D +++ IC SDLH R + ++ GHE VG V +VG++V + K GD+V
Sbjct: 23 QGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRV 82
Query: 95 GVGVLVASCQKCESCQQGLENYCPNM---ILTYNSIDRDGTKTYGGYSDLIVV---DQHY 148
V + C +C C++G +C N N ID GG ++ + V D +
Sbjct: 83 SVPCIT-FCGRCRFCRRGYHAHCENGLWGWKLGNRID-------GGQAEYVRVPYADMN- 133
Query: 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM----TEPGKHLGVAGLGGLGHVAVKIGK 204
+ + PD +P + L + P ++G +PG + V G G +G AV +
Sbjct: 134 LAKIPDGLPDED---ALMLSDIL--PTGFHGAELAGIKPGSTVAVIGAGPVGLCAVAGAR 188
Query: 205 AFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP--AKVKAAMGT--MDYIIDTVSAVH 259
G ++ + ++P++ A D + ++ G +D +I+ V
Sbjct: 189 LLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGFEE 248
Query: 260 SLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRL 297
+ + +++ G + VG+ KP +P+ + L
Sbjct: 249 TFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNL 286
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347 |
| >gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-23
Identities = 89/340 (26%), Positives = 140/340 (41%), Gaps = 41/340 (12%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
E G D+V +++ + H DL R G+ P + G + G V VG V+ K G
Sbjct: 24 EPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVKPGQ 83
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNM-ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLR 151
+V + + SC +CE C G EN C IL G GGY++ + V +L
Sbjct: 84 RVVIYPGI-SCGRCEYCLAGRENLCAQYGIL--------GEHVDGGYAEYVAVPARNLLP 134
Query: 152 FPDNMPLD--AGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGL 208
PDN+ + A APL +T + + PG+ + V G+G A++I K FG
Sbjct: 135 IPDNLSFEEAAAAPL--TFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA 192
Query: 209 KVTVISTSPKKESEAISKLGADAFLVSS---DPAKVKAAMGT--MDYIIDTVSAVHSLAP 263
V + S K A +LGAD + +V+ G +D +++ V A
Sbjct: 193 TVIATAGSEDKLERA-KELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAATWEKS 251
Query: 264 LLGLLKVNGKLVTVGL---PEKPLEVPIFALVGARRLVG------GSNVGGMKETQEMLD 314
L L G+LVT G E P+++ R + GS +G E E L
Sbjct: 252 LK-SLARGGRLVTCGATTGYEAPIDL--------RHVFWRQLSILGSTMGTKAELDEALR 302
Query: 315 FCAKHNIAADIELV-RMDQINTAMERLAKSDVKYRFVIDV 353
+ + I+ V +++ A RL + + V+
Sbjct: 303 LVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342 |
| >gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 3e-23
Identities = 75/273 (27%), Positives = 120/273 (43%), Gaps = 32/273 (11%)
Query: 36 GADDVTIKILFCGICHSDLH----CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
G +V +++ GIC SD+H ++ V P+V GHE GTV VG+ V+ K G
Sbjct: 21 GPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKE-PMVLGHESAGTVVAVGSGVTHLKVG 79
Query: 92 DKVGV--GVLVASCQKCESCQQGLENYCPNMIL--TYNSIDRDGTKTYGGYSDLIVVDQH 147
D+V + GV C+ CE C+ G N CP+M T DGT +
Sbjct: 80 DRVAIEPGV---PCRTCEFCKSGRYNLCPDMRFAATPPV---DGT-----LCRYVNHPAD 128
Query: 148 YVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG 207
+ + PDN+ L+ GA + + V++ + PG + V G G +G + + KAFG
Sbjct: 129 FCHKLPDNVSLEEGALVEPLSVGVHACRR--AGVRPGDTVLVFGAGPIGLLTAAVAKAFG 186
Query: 208 -LKVTVISTSPKKESEAISKLGADAFLVSSDP------AKVKAAMGTM--DYIIDTVSAV 258
KV V P + A +LGA + K+ +G D +I+ A
Sbjct: 187 ATKVVVTDIDPSRLEFA-KELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAE 245
Query: 259 HSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFAL 291
+ + + G +V VG+ + + +P+ A
Sbjct: 246 SCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAA 278
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343 |
| >gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-22
Identities = 78/305 (25%), Positives = 130/305 (42%), Gaps = 35/305 (11%)
Query: 2 AKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLH------ 55
+ + W NT PF G DV +++ GIC SD+H
Sbjct: 8 SGEGSGVEEENMAAWLVGVNTLKIQPFKLP--PLGPHDVRVRMKAVGICGSDVHYLKTMR 65
Query: 56 CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV--GVLVASCQKCESCQQGL 113
CA V P+V GHE G + +VG+ V GD+V + G+ SC +C C++G
Sbjct: 66 CADF---VVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGI---SCWRCNLCKEGR 119
Query: 114 ENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYS 173
N CP M +G ++ +V + P+N+ L+ GA +C ++V
Sbjct: 120 YNLCPEMKFFATP------PVHGSLANQVVHPADLCFKLPENVSLEEGA--MCEPLSVGV 171
Query: 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAF 232
P ++ V G G +G V + +AFG ++ ++ ++ S A LGAD
Sbjct: 172 HACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ-LGADEI 230
Query: 233 L--------VSSDPAKVKAAMGT-MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP 283
+ V S+ +++ AMG +D D V +++ L + GK+ VG+
Sbjct: 231 VLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNE 290
Query: 284 LEVPI 288
+ VP+
Sbjct: 291 MTVPL 295
|
Length = 364 |
| >gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 77/325 (23%), Positives = 122/325 (37%), Gaps = 57/325 (17%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVT---NYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
+V +K+ + D R + +P +PG + G V VG+ V++FK GD
Sbjct: 25 KPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGD 84
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+V G L K G ++ +V + + +
Sbjct: 85 EV-FGRL-------------------------------PPKGGGALAEYVVAPESGLAKK 112
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVT 211
P+ + + A L AG+T ++ G +PG+ + + GG+G AV+I KA G VT
Sbjct: 113 PEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVT 172
Query: 212 VISTSPKKESEAISKLGADAFL--VSSDPAKVKAAMGTMDYIIDTVSAVH-SLAPLLGLL 268
+ S + S LGAD + + D + A D I D V SL L
Sbjct: 173 GVC-STRNAELVRS-LGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLAL 230
Query: 269 KVNGKLVTVGLPEK-----PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA 323
K G+ V+VG L +P+ G RRL K E L+ A+ +
Sbjct: 231 KPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLK----FFLAKPNAEDLEQLAEL-VEE 285
Query: 324 D-----IELV-RMDQINTAMERLAK 342
I+ V ++ A RL
Sbjct: 286 GKLKPVIDSVYPLEDAPEAYRRLKS 310
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-21
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 13/201 (6%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
DDV +K+ G+C SD+ G YPI GHE G V VG+ V GD V
Sbjct: 26 DDVLVKVASSGLCGSDIPRIFKN-GAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVAC- 83
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
V + C C C +G + C Y+ I G++ GG ++ IVV + + P +MP
Sbjct: 84 VPLLPCFTCPECLRGFYSLCAK----YDFI---GSRRDGGNAEYIVVKRKNLFALPTDMP 136
Query: 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTS 216
++ GA ITV + GK++ + G G +G +A++ A G K VT I +
Sbjct: 137 IEDGA--FIEPITVGLHAFHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIN 194
Query: 217 PKKESEAISKLGADAFLVSSD 237
+K + A S LGA S +
Sbjct: 195 SEKLALAKS-LGAMQTFNSRE 214
|
Length = 347 |
| >gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 8e-21
Identities = 71/264 (26%), Positives = 115/264 (43%), Gaps = 25/264 (9%)
Query: 34 ETGADDVTIKILFCGICHSDLHCAR-NEWGVTNY--PIVPGHEIVGTVTKVGNNVSKFKE 90
E G +V IK+L IC +D+H +EW + P V GHE+ G V +G V K
Sbjct: 20 EPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKV 79
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD V V + C KC +C++G + C N + G T G +++ VV +
Sbjct: 80 GDYVSVETHIV-CGKCYACRRGQYHVCQNTKIF-------GVDTDGCFAEYAVVPAQNIW 131
Query: 151 RFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG 207
+ P ++P + PL A TV + GK + V G G +G +A+ + KA G
Sbjct: 132 KNPKSIPPEYATIQEPLGNAVHTVLA------GPISGKSVLVTGAGPIGLMAIAVAKASG 185
Query: 208 LKVTVISTSPKKESEAISKLGADAFL--VSSDPAKVKAAMGT---MDYIIDTVSAVHSLA 262
++S + E K+GA + D K A + +D ++ A +L
Sbjct: 186 AYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALE 245
Query: 263 PLLGLLKVNGKLVTVGLPEKPLEV 286
L + G++ +GLP + +
Sbjct: 246 QGLQAVTPGGRVSLLGLPPGKVTI 269
|
This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340 |
| >gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 73/272 (26%), Positives = 126/272 (46%), Gaps = 30/272 (11%)
Query: 34 ETGADDVTIKILFCGICHSDLHCAR-NEW--GVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
+ G +V IK+L IC +D+H +EW P++ GHE G V +VG V++ K
Sbjct: 22 KPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKV 81
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNM-ILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
GD V + C KC C+ G + C N IL +D DG +++ +VV + +
Sbjct: 82 GDYVSAETHI-VCGKCYQCRTGNYHVCQNTKIL---GVDTDGC-----FAEYVVVPEENL 132
Query: 150 LRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF 206
+ ++P + + PL A TV + GK + + G G +G +A+ + KA
Sbjct: 133 WKNDKDIPPEIASIQEPLGNAVHTVLAGDV------SGKSVLITGCGPIGLMAIAVAKAA 186
Query: 207 GL-KVTVISTSPKKESEAISKLGADAFLVSS---DPAKVKAAMGTM--DYIIDTVSAVHS 260
G V +P + A K+GAD +++ D +VK+ D +++ +
Sbjct: 187 GASLVIASDPNPYRLELA-KKMGAD-VVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKA 244
Query: 261 LAPLLGLLKVNGKLVTVGLPEKPLEVPIFALV 292
+ L L G++ +GLP P+++ + LV
Sbjct: 245 IEQGLKALTPGGRVSILGLPPGPVDIDLNNLV 276
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341 |
| >gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 6e-19
Identities = 63/266 (23%), Positives = 99/266 (37%), Gaps = 40/266 (15%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
GA +V I++ G+ +D R + P G+E G V VG V+ F GD+V
Sbjct: 26 GAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFAVGDRV 85
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
V I YG Y++ +V V++ PD
Sbjct: 86 SV------------------------------IPAADLGQYGTYAEYALVPAAAVVKLPD 115
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVI 213
+ A L +T Y + PG + + A +G A++I A G V
Sbjct: 116 GLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIAT 175
Query: 214 STSPKKESEAISKLGADAFLVSSDPAKVKAAM----GT-MDYIIDTVSAVHSLAPLLGLL 268
+ + +K +A+ LGA +V+ + V + G +D + D V A L L
Sbjct: 176 TRTSEK-RDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADAL 233
Query: 269 KVNGKLVTVG-LPEKPLEVPIFALVG 293
G LV G L +P P+ A +
Sbjct: 234 APGGTLVVYGALSGEPTPFPLKAALK 259
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328 |
| >gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 8e-19
Identities = 80/344 (23%), Positives = 131/344 (38%), Gaps = 48/344 (13%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96
A +V IKIL +CH+D++ + +P + GHE G V VG V+ K GD V +
Sbjct: 27 AMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKPGDHV-L 85
Query: 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGG------------------- 137
V C++C C+ N C + + + G G
Sbjct: 86 PVFTGECKECRHCKSEKSNMCDLLRINTDR----GVMINDGKSRFSINGKPIYHFVGTST 141
Query: 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
+S+ VV V + PLD L C T + G + + GLG +G
Sbjct: 142 FSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGL 201
Query: 198 VAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK----VKAAM--GTMDY 250
+ + G ++ + +P K +A K G F+ D K V A M G +DY
Sbjct: 202 AVAEGARIRGASRIIGVDLNPSKFEQA-KKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDY 260
Query: 251 IIDTVSAVHSLAPLLGLLKVN---GKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGG 305
+ + ++ V+ G V +G+P K L+ R L G+ GG
Sbjct: 261 SFECTGNIDAMIS--AFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLK-GTLFGG 317
Query: 306 MKETQEMLDFCAKHNIAADIEL-------VRMDQINTAMERLAK 342
K ++ + + + ++EL + +IN A + L K
Sbjct: 318 YKPKTDLPNL-VEKYMKKELELEKFITHELPFSEINKAFDLLLK 360
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369 |
| >gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 1e-18
Identities = 77/300 (25%), Positives = 127/300 (42%), Gaps = 60/300 (20%)
Query: 38 DDVTIKILFCGICHSDLHCARNEW-------GVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
D++ I++ CGIC SD+H + G+T +P+V GHE G V K G NV F++
Sbjct: 52 DEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEK 111
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD V ++ C C +C+ G N+C N+ S D G +++ I V+ Y
Sbjct: 112 GDPVTAEEMMW-CGMCRACRSGSPNHCKNLKELGFSAD-------GAFAEYIAVNARYAW 163
Query: 151 -------RFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTE------PGKHLGVAGLGG 194
+ ++ +AGA P A Y G+ PG ++ V G G
Sbjct: 164 EINELREIYSEDKAFEAGALVEPTSVA---------YNGLFIRGGGFRPGAYVVVYGAGP 214
Query: 195 LGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK------------V 241
+G A+ + KA G KV S ++ + A ++GAD +P K V
Sbjct: 215 IGLAAIALAKAAGASKVIAFEISEERRNLA-KEMGAD---YVFNPTKMRDCLSGEKVMEV 270
Query: 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG--LPEKPLEVPIFALVGARRLVG 299
G + + ++ + + +NGK+V +G PL + + V ++VG
Sbjct: 271 TKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQ-VRRAQIVG 329
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384 |
| >gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 93/311 (29%), Positives = 133/311 (42%), Gaps = 34/311 (10%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96
A +V IKI+ GIC SD H + VT +P++ GHE G V VG V+ K GDKV +
Sbjct: 32 AHEVRIKIVATGICRSDDH-VVSGKLVTPFPVILGHEAAGIVESVGEGVTTVKPGDKV-I 89
Query: 97 GVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTK--TYGG-----------YSDLI 142
+ V C KC +C N C N + + +DGT T G +S+
Sbjct: 90 PLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYT 149
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
VVD+ V + PL+ + C T Y PG V GLGG+G A+
Sbjct: 150 VVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMG 209
Query: 203 GKAFGLKVTVISTSPKKESEAISK-LGADAFLVSSDPAK----VKAAM--GTMDYIIDTV 255
KA G +I+ K+ A +K LGA + D K V M G +D+ + +
Sbjct: 210 CKAAG-ASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVI 268
Query: 256 SAVHSLAPLLGLLKVN-GKLVTVGLP--EKPLEV-PIFALVGARRLVGGSNVGGMKETQE 311
+ ++ L G V VG+P + L + P+ L G R G+ GG K
Sbjct: 269 GRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLLLTG--RTWKGAVFGGWKSKDS 326
Query: 312 M----LDFCAK 318
+ D+ AK
Sbjct: 327 VPKLVADYMAK 337
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373 |
| >gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 3e-18
Identities = 92/330 (27%), Positives = 129/330 (39%), Gaps = 48/330 (14%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGV-TNY--PIVPGHEIVGTVTKVGNNVSKFKE 90
E GA DV +K+ CG+CH+DL GV TN+ P+ GHEI G V + G + +
Sbjct: 20 ELGAGDVVVKVAGCGVCHTDLSYYYM--GVRTNHALPLALGHEISGRVIQAGAGAASW-- 75
Query: 91 GDKVGVGVLVAS---CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH 147
+G V+V + C +CE C+ G C + N + GG++ IVV
Sbjct: 76 ---IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQ-------GGFASHIVVPAK 125
Query: 148 YVLRFPDNMPLDAGAPLLCAGI------TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
+ + AG PL + T Y G+ + G + V G GG+G V+
Sbjct: 126 GLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQAGL-KKGDLVIVIGAGGVGGYMVQ 184
Query: 202 IGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP------------AKVKAAMGTMD 249
KA G V I P+K E + GAD L D AK + T
Sbjct: 185 TAKAMGAAVVAIDIDPEK-LEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243
Query: 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVG--ARRLVGGSNVGGMK 307
I + + L LL G LV VG E + L+ AR L N G
Sbjct: 244 KIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARAL---GNWGCPP 300
Query: 308 ET-QEMLDFC--AKHNIAADIELVRMDQIN 334
+ LD K + +E +DQI
Sbjct: 301 DRYPAALDLVLDGKIQLGPFVERRPLDQIE 330
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349 |
| >gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 6e-18
Identities = 63/269 (23%), Positives = 102/269 (37%), Gaps = 47/269 (17%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
G D+V +K+ + D + + +YP + G + GTV +VG+ V++FK GD+V
Sbjct: 25 GPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVGDRV- 82
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
G + G + + +V D + PDN
Sbjct: 83 AG------------------FVHGG--------NPNDPRNGAFQEYVVADADLTAKIPDN 116
Query: 156 MPLDAGAPLLCAGITV--------YSPMKYYGMTEPGKHLGVAGLGG---LGHVAVKIGK 204
+ + A L +T P+ + K V GG +G +A+++ K
Sbjct: 117 ISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAK 176
Query: 205 AFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV----KAAMGTMDYIIDTVSAVHS 260
G K VI+T+ K + + LGADA DP V A G + Y +D +S S
Sbjct: 177 LAGYK--VITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPES 234
Query: 261 LAPLLGLL--KVNGKLVTVGLPEKPLEVP 287
L GKLV++ + E
Sbjct: 235 AQLCAEALGRSGGGKLVSLLPVPEETEPR 263
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339 |
| >gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-18
Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 49/282 (17%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
+ E + +++L GIC++DL + G +P VPGHE VG V + E
Sbjct: 19 KPEPPPGEALVRVLLAGICNTDLEIYK---GYYPFPGVPGHEFVGIVEEGP-------EA 68
Query: 92 DKVG---VGVLVASCQKCESCQQGLENYCPNM----ILTYNSIDRDGTKTYGGYSDLIVV 144
+ VG VG + +C +CE C++GL +CPN I+ + G +++ + +
Sbjct: 69 ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRD----------GAFAEYLTL 118
Query: 145 DQHYVLRFPDNMPLDAGA---PLLCAG-ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200
+ PD +P + PL A I P+ PG + V G G LG +
Sbjct: 119 PLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPIT------PGDKVAVLGDGKLGLLIA 172
Query: 201 KIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260
++ G V ++ +K + A +LG + L + G D +++ +
Sbjct: 173 QVLALTGPDVVLVGRHSEKLALA-RRLGVETVLPDEAE----SEGGGFDVVVEATGSPSG 227
Query: 261 LAPLLGLLKVNGKLV---TVGLPE----KPLEVPIFALVGAR 295
L L L++ G +V T P V LVG+R
Sbjct: 228 LELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSR 269
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319 |
| >gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 2e-17
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 54/256 (21%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPI------VPGHEIVGTVTKVGNNVSKFK 89
G +V I++ G+ +DL + YP + G E+ G V VG V+ +K
Sbjct: 26 GPGEVLIRVAAAGVNRADLLQRQG-----LYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
GD+V L G GGY++ +VV +
Sbjct: 81 VGDRV-------------------------CALLA------G----GGYAEYVVVPAGQL 105
Query: 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGL 208
L P+ + L A L T + + G + G+ + + G G+G A+++ KA G
Sbjct: 106 LPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA 165
Query: 209 KVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAP 263
+V + S +K EA LGAD + +VK A G +D I+D V LA
Sbjct: 166 RVIATAGSEEK-LEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGG-DYLAR 223
Query: 264 LLGLLKVNGKLVTVGL 279
L L +G+LV +GL
Sbjct: 224 NLRALAPDGRLVLIGL 239
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323 |
| >gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 61/270 (22%), Positives = 106/270 (39%), Gaps = 47/270 (17%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVT--NYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
G +V +++ G+ D + R P VPG + G V VG V K GD+
Sbjct: 26 GPGEVLVRVHASGVNPVDTY-IRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLKVGDR 84
Query: 94 V---GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
V +G G ++ +VV ++
Sbjct: 85 VWLTNLGWGRRQ---------------------------------GTAAEYVVVPADQLV 111
Query: 151 RFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLK 209
PD + + GA L +T Y + + + G+ + V G G +GH AV++ + G +
Sbjct: 112 PLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGAR 171
Query: 210 VTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAPL 264
V ++S + +E + + GADA ++ AA +D II+ ++ V+ LA
Sbjct: 172 VIATASSAEG-AELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVN-LAKD 229
Query: 265 LGLLKVNGKLVTVGLPEKPLEVPIFALVGA 294
L +L G++V G +PI L+
Sbjct: 230 LDVLAPGGRIVVYGSGGLRGTIPINPLMAK 259
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-17
Identities = 69/262 (26%), Positives = 105/262 (40%), Gaps = 28/262 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
D +K+ IC SDLH R T V GHE VG V +VG V K GD+V
Sbjct: 24 DPTDAIVKVTAAAICGSDLHIYRGHIPST-PGFVLGHEFVGEVVEVGPEVRTLKVGDRV- 81
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-GGYSDLIVVD--QHYVLRF 152
V +C +C C++G C L G+ G ++ + V +L+
Sbjct: 82 VSPFTIACGECFYCRRGQSGRCAKGGL----FGYAGSPNLDGAQAEYVRVPFADGTLLKL 137
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYG----MTEPGKHLGVAGLGGLGHVAVKIGKAFGL 208
PD + +A LL I P Y+G PG + V G G +G AV + G
Sbjct: 138 PDGLSDEAA--LLLGDIL---PTGYFGAKRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGA 192
Query: 209 -KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT----MDYIIDTV--SAVHSL 261
+V + P++ A + LGA+ + T D +++ V +A L
Sbjct: 193 ARVFAVDPVPERLERA-AALGAEPINFEDAEPVERVREATEGRGADVVLEAVGGAAALDL 251
Query: 262 APLLGLLKVNGKLVTVGLPEKP 283
A L++ G + +VG+
Sbjct: 252 A--FDLVRPGGVISSVGVHTAE 271
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344 |
| >gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 9e-17
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 194 GLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGTM- 248
G+G AV++ KA G +V + S +K E +LGAD + D +V+ G
Sbjct: 1 GVGLAAVQLAKALGAARVIAVDRSEEKL-ELAKELGADHVINYRDEDFVERVRELTGGRG 59
Query: 249 -DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGGM 306
D +ID V A +L L LL+ G++V VGLP P+ P+ L+ + GS GG
Sbjct: 60 VDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGGR 119
Query: 307 KETQEMLDFCAK 318
+E +E L+ A
Sbjct: 120 EEFEEALELLAS 131
|
Length = 131 |
| >gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 77/272 (28%), Positives = 122/272 (44%), Gaps = 41/272 (15%)
Query: 34 ETGADDVTIKILFCGICHSDLHCAR-NEW--GVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E G +DV IK+ IC +D+H +EW P+V GHE VG V +VG+ V+ FK
Sbjct: 22 EPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKV 81
Query: 91 GDKV-GVGVLVASCQKCESCQQGLENYCPN-MILTYNSIDRDGTKTYGGYSDLIVVDQHY 148
GD+V G G +V C C +C+ G + C N + N R G +++ +V+
Sbjct: 82 GDRVSGEGHIV--CGHCRNCRAGRRHLCRNTKGVGVN---RP-----GAFAEYLVIPAFN 131
Query: 149 VLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205
V + PD++P D A P A T S + + G+ + + G G +G +A + K
Sbjct: 132 VWKIPDDIPDDLAAIFDPFGNAVHTALS----FDLV--GEDVLITGAGPIGIMAAAVAKH 185
Query: 206 FGLKVTVISTSPKKESEAISKLGADAFLVSS--DPAKVKAAMGTMDYIIDTV-------S 256
G + VI+ + E K+GA + + D V A +G M D S
Sbjct: 186 VGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG-MTEGFDVGLEMSGAPS 244
Query: 257 AVHSLAPLLGLLKVN--GKLVTVGLPEKPLEV 286
A L +N G++ +G+P + +
Sbjct: 245 AFRQ-----MLDNMNHGGRIAMLGIPPGDMAI 271
|
Length = 341 |
| >gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 78/279 (27%), Positives = 122/279 (43%), Gaps = 27/279 (9%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
+ G +V + I CG+CH+DLH E G+ +P + GHE G V VG V+ GD
Sbjct: 23 DPGPGEVIVDIQACGVCHTDLH--YREGGINDEFPFLLGHEAAGVVEAVGEGVTDVAPGD 80
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDR----DGTKT-----YGGYSDLIV 143
V V A C +C +C++G YC + T+N+ + DGT+ G +++ +
Sbjct: 81 YV-VLNWRAVCGQCRACKRGRPWYCFD---THNATQKMTLTDGTELSPALGIGAFAEKTL 136
Query: 144 VDQHYVLRF-PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
V + P P AG L C + G + G + V G GG+G A+
Sbjct: 137 VHAGQCTKVDPAADPAAAGL-LGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAG 195
Query: 203 GKAFG-LKVTVISTSPKKESEAISKLGADAFLVSS--DP-AKVKAAMGTM--DYIIDTVS 256
G K+ + +K A + GA + SS DP ++A G D +ID V
Sbjct: 196 AALAGASKIIAVDIDDRKLEWA-REFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG 254
Query: 257 AVHSLAPLLGLLKVNGKLVTVGLP--EKPLEVPIFALVG 293
+ + G +V VG+P + LE+P+ + G
Sbjct: 255 RPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFG 293
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358 |
| >gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 51/253 (20%), Positives = 90/253 (35%), Gaps = 41/253 (16%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCAR-NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E A +V +K+ G+ +D+ R P PG+++VG V +G+ V+ F+
Sbjct: 22 LPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD+V + GG ++ I +D Y++
Sbjct: 82 GDRV-AALTR----------------------------------VGGNAEYINLDAKYLV 106
Query: 151 RFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLK 209
P+ + L+ +T Y + G+ + + G GG+G +++ G
Sbjct: 107 PVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA- 165
Query: 210 VTVISTSPKKESEAISKLGADAFLVS-SDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLL 268
V T+ ++ A+ +LGA D G +D + D V S L
Sbjct: 166 -EVYGTASERNHAALRELGATPIDYRTKDWLPAMLTPGGVDVVFDGVGG-ESYEESYAAL 223
Query: 269 KVNGKLVTVGLPE 281
G LV G
Sbjct: 224 APGGTLVCYGGNS 236
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331 |
| >gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 73/270 (27%), Positives = 106/270 (39%), Gaps = 45/270 (16%)
Query: 28 FHFSRRET---GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNN 84
E GA +V +K+ G+ D +YP VPG + G V VG
Sbjct: 15 LTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAK 74
Query: 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVV 144
V+ +K GD+V L G +++ VV
Sbjct: 75 VTGWKVGDRVAY-------------HASLARG-------------------GSFAEYTVV 102
Query: 145 DQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKH-LGVAGLGGLGHVAVKIG 203
D VL PD++ + A L CAG+T Y + E G+ L G GG+G AV++
Sbjct: 103 DARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLA 162
Query: 204 KAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM-----DYIIDTVSAV 258
K GL VI+T K+ E + LGAD + +D + D ++DTV
Sbjct: 163 KRAGL--RVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGE 220
Query: 259 HSLAPLLGLLKVNGKLVTV-GLPEKPLEVP 287
+ A L L NG LV + G P+ + P
Sbjct: 221 TAAA-LAPTLAFNGHLVCIQGRPDASPDPP 249
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325 |
| >gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 68/270 (25%), Positives = 110/270 (40%), Gaps = 30/270 (11%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWGVTNY----PIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ ++I GIC SDLH E V N+ P+V GHE++G + + S KEG
Sbjct: 28 NGTLVQITRGGICGSDLH-YYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQT 84
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-----GGYSDLIVVDQHY 148
V + C C+ C EN C M G+ Y GG++ VVD
Sbjct: 85 VAINP-SKPCGHCKYCLSHNENQCTTMRFF-------GSAMYFPHVDGGFTRYKVVDTAQ 136
Query: 149 VLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205
+ +P+ A PL + +++ + + GK + V+G+G +G + V K
Sbjct: 137 CIPYPEKADEKVMAFAEPL---AVAIHAAHQAGDLQ--GKRVFVSGVGPIGCLIVAAVKT 191
Query: 206 FGLKVTVISTSPKKESEAISKLGADAFL--VSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263
G V + + ++GAD + + D KA G D + S+
Sbjct: 192 LGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINT 251
Query: 264 LLGLLKVNGKLVTVGLPEKPLEVPIFALVG 293
L + + G +V VG+ P E P+ L+
Sbjct: 252 CLEVTRAKGVMVQVGMGGAPPEFPMMTLIV 281
|
Length = 343 |
| >gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 66/252 (26%), Positives = 106/252 (42%), Gaps = 50/252 (19%)
Query: 65 NYPI------VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCP 118
YP + G E+ G V VG VS++K GD+V LVA
Sbjct: 50 KYPPPPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCA--LVAG---------------- 91
Query: 119 NMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYY 178
GGY++ + V VL P+ + L A L TV+S +
Sbjct: 92 -----------------GGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQR 134
Query: 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD 237
G + G+ + + G G+G A+++ KAFG +V + S +K A LGAD + +
Sbjct: 135 GGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEK-CAACEALGADIAINYRE 193
Query: 238 ---PAKVKAAMGT--MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFAL 291
VKA G +D I+D V + L + L ++G++V +G + E+ + L
Sbjct: 194 EDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPL 252
Query: 292 VGARRLVGGSNV 303
+ R + GS +
Sbjct: 253 LAKRLTITGSTL 264
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325 |
| >gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 67/253 (26%), Positives = 99/253 (39%), Gaps = 55/253 (21%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWGVTNY------PIVPGHEIVGTVTKVGNNVSKFKEG 91
+V +++ CG+ +DL AR G Y P VPG E GTV VG V FK G
Sbjct: 27 GEVRVRVEACGLNFADLM-AR--QG--LYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVG 81
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLR 151
D+V M LT +GGY++++ V V
Sbjct: 82 DRV-------------------------MGLTR----------FGGYAEVVNVPADQVFP 106
Query: 152 FPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV--AGLGGLGHVAVKIGKAFGLK 209
PD M + A +T Y + G PG+ + V A GG+G A ++ K
Sbjct: 107 LPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAA-GGVGLAAGQLCKTVP-N 164
Query: 210 VTVISTSPKKESEAISKLGADAFLVSSDPAKV----KAAMGTMDYIIDTVSAVHSLAPLL 265
VTV+ T+ + EA+ + G + V K + +D ++D +
Sbjct: 165 VTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGE-DTRKSY 223
Query: 266 GLLKVNGKLVTVG 278
LLK G+LV G
Sbjct: 224 DLLKPMGRLVVYG 236
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337 |
| >gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 74/291 (25%), Positives = 117/291 (40%), Gaps = 35/291 (12%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYP-----IVPGHEIVGTVTKVGNNVS 86
E +V ++ L G+C +D E+G P +V GHE +G V +VG+ S
Sbjct: 20 EPEPTPGEVLVRTLEVGVCGTDREIVAGEYG--TAPPGEDFLVLGHEALGVVEEVGDG-S 76
Query: 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGY-SDLIVVD 145
GD V V + KC +C+ G ++C Y +R G K G+ + V D
Sbjct: 77 GLSPGDLV-VPTVRRPPGKCLNCRIGRPDFCETG--EY--TER-GIKGLHGFMREYFVDD 130
Query: 146 QHYVLRFPDNMPLDAGA---PLLCA------GITVYSPMKYYGMTEPGKHLGVAGLGGLG 196
Y+++ P ++ D G PL V + + P + L V G G +G
Sbjct: 131 PEYLVKVPPSL-ADVGVLLEPLSVVEKAIEQAEAVQKRLPTW---NPRRAL-VLGAGPIG 185
Query: 197 HVAVKIGKAFGLKVTVISTSPKKESEA--ISKLGADAFLVSSDPAKVKAAMGTMDYIIDT 254
+A + + G +V V++ + +A + +LGA S P +G D II+
Sbjct: 186 LLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEA 245
Query: 255 VSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNV 303
L L NG ++ G+P EV L R LV G+
Sbjct: 246 TGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELN--RDLVLGNKA 294
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355 |
| >gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 6e-15
Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 44/252 (17%)
Query: 35 TGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
G +V +++L I SDL +G P VPG+E VG V +VG+ VS G +
Sbjct: 24 PGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQR 83
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V + + G + + +V ++ P
Sbjct: 84 V---LPLGG--------------------------------EGTWQEYVVAPADDLIPVP 108
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTV 212
D++ + A L +T + + Y PG + A +G + +++ K G K
Sbjct: 109 DSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTIN 168
Query: 213 ISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAPLLGL 267
+ ++ E + LGAD + SS +VK A G +D V S L
Sbjct: 169 VVRRDEQVEE-LKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGE-SATRLARS 226
Query: 268 LKVNGKLVTVGL 279
L+ G LV GL
Sbjct: 227 LRPGGTLVNYGL 238
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323 |
| >gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 9e-15
Identities = 66/328 (20%), Positives = 123/328 (37%), Gaps = 47/328 (14%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
E G +V +++ + + DL + P++P + G V VG V++FK GD
Sbjct: 24 EPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFKVGD 83
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGY--------SDLIVV 144
+V P + ++ +V+
Sbjct: 84 RV----------------------VPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVL 121
Query: 145 DQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGK 204
+ ++R PD++ + A L CAG+T ++ + G +PG + V G GG+ A++ K
Sbjct: 122 PEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAK 181
Query: 205 AFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-----GTMDYIIDTVSA- 257
A G +V S+S +K E LGAD + + P + + +D++++
Sbjct: 182 AAGARVIATSSSDEK-LERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPG 240
Query: 258 --VHSLAPLLGLLKVNGKLVTVG-LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLD 314
S+ + G + +G L V + L+ + G VG + + M
Sbjct: 241 TLAQSIK----AVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNR 296
Query: 315 FCAKHNIAADIELV-RMDQINTAMERLA 341
H I I+ V ++ A L
Sbjct: 297 AIEAHRIRPVIDRVFPFEEAKEAYRYLE 324
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336 |
| >gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ A +V +K+ GIC SD H R YP V GHE G + VG V + G++
Sbjct: 21 QPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGER 80
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V V V SC C C G N C ++++ + RD GG+S+ VV R P
Sbjct: 81 VAVDP-VISCGHCYPCSIGKPNVCTSLVVL--GVHRD-----GGFSEYAVVPAKNAHRIP 132
Query: 154 DNMP 157
D +
Sbjct: 133 DAIA 136
|
Length = 339 |
| >gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 60/223 (26%), Positives = 90/223 (40%), Gaps = 44/223 (19%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P+ G + G V +G+ V F+ GD+V V S
Sbjct: 74 PLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQ----------------------- 110
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEP--- 183
G +++ +VV ++ V + P N+ + A L AG+T +S + G P
Sbjct: 111 ---------GTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNA 161
Query: 184 -GKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL--VSSDPA 239
GK L + G GG+G A+++ KA+G VT T + LGAD + + D
Sbjct: 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTT--TCSTDAIPLVKSLGADDVIDYNNEDFE 219
Query: 240 KVKAAMGTMDYIIDTV-SAVHSLAPLLGLLKVNGKLVTVGLPE 281
+ G D I+DTV A L LLK G VT+ P
Sbjct: 220 EELTERGKFDVILDTVGGDTEKWA--LKLLKKGGTYVTLVSPL 260
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350 |
| >gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-14
Identities = 85/332 (25%), Positives = 139/332 (41%), Gaps = 33/332 (9%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96
+V ++I+ G+CH+D +P++ GHE G V VG V+ K GD V +
Sbjct: 26 KGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGDHV-I 84
Query: 97 GVLVASCQKCESCQQGLENYCPNMILTY-NSIDRDGTKTY-------------GGYSDLI 142
+ A C +C+ C G N C + T + DGT + +S+
Sbjct: 85 PLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYT 144
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
VV + + + PL+ L C T + E G + V GLGG+G ++
Sbjct: 145 VVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQG 204
Query: 203 GK-AFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK------VKAAMGTMDYIIDTV 255
+ A ++ I +P K E KLGA + +D K V+ G +DY + +
Sbjct: 205 ARMAKASRIIAIDINPAK-FELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263
Query: 256 SAVHSL-APLLGLLKVNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGGMK---ET 309
V+ + A L K G+ + +G+ E+ F LV R+ GS GG+K E
Sbjct: 264 GNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTG-RVWRGSAFGGVKGRTEL 322
Query: 310 QEMLDFCAKHNIAAD---IELVRMDQINTAME 338
+++ K IA D + ++ IN A +
Sbjct: 323 PGIVEQYMKGEIALDDFVTHTMPLEDINEAFD 354
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368 |
| >gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 4e-14
Identities = 88/336 (26%), Positives = 139/336 (41%), Gaps = 61/336 (18%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
DV IK+ + + + D + GV +YP++PG + GTV V + +F+EGD+V
Sbjct: 28 DVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTV--VSSEDPRFREGDEV--- 82
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
+V GL G GGYS V +++ P+ +
Sbjct: 83 -IVTGY--------GL-----------------GVSHDGGYSQYARVPADWLVPLPEGLS 116
Query: 158 LDAGAPLLCAGIT----VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTV 212
L L AG T V + ++ G+T + V G GG+G +AV I G +V V
Sbjct: 117 LREAMALGTAGFTAALSVMA-LERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEV-V 174
Query: 213 ISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKV 270
ST +E + + +LGA + D + + +DTV H+LA +L LK
Sbjct: 175 ASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGG-HTLANVLAQLKY 233
Query: 271 NGKLVTVGL---PEKPLEVPIFALVGARRLVG-GSNVGGMKETQEMLDFCAKHNIAADIE 326
G + GL P+ P V F L G L+G S M + A +A D++
Sbjct: 234 GGAVAACGLAGGPDLPTTVLPFILRGV-SLLGIDSVYCPMALREA-----AWQRLATDLK 287
Query: 327 LVRMDQINT---------AMERLAKSDVKYRFVIDV 353
++ I A+E++ + R V+DV
Sbjct: 288 PRNLESITREITLEELPEALEQILAGQHRGRTVVDV 323
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323 |
| >gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 58/222 (26%), Positives = 87/222 (39%), Gaps = 45/222 (20%)
Query: 36 GADDVTIKILFCGICHSDLHCAR------------NEWGVTNYPIVPGHEIVGTVTKVGN 83
G V +K+L CGIC SDLH + + IV GHE G V G
Sbjct: 22 GPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGA-DIVLGHEFCGEVVDYGP 80
Query: 84 NVS-KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLI 142
K K G +V + + C + SC GL + GGY++ +
Sbjct: 81 GTERKLKVGTRV-TSLPLLLCGQGASCGIGL-----------------SPEAPGGYAEYM 122
Query: 143 VVDQHYVLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVA 199
++ + +LR PD + ++ A PL V PG+ V G G +G
Sbjct: 123 LLSEALLLRVPDGLSMEDAALTEPLAVGLHAVRR-----ARLTPGEVALVIGCGPIGLAV 177
Query: 200 VKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAK 240
+ KA G+ + SP++ + A +GAD + DPA
Sbjct: 178 IAALKARGVGPIVASDFSPERRALA-LAMGADIVV---DPAA 215
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341 |
| >gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 8e-14
Identities = 100/337 (29%), Positives = 145/337 (43%), Gaps = 43/337 (12%)
Query: 37 ADDVTIKILFCGICHSD---LHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
A +V IKIL G+CH+D L A E G+ +P++ GHE G V VG V+ K GD
Sbjct: 27 AGEVRIKILATGVCHTDAYTLSGADPE-GL--FPVILGHEGAGIVESVGEGVTSVKPGDH 83
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTY-NSIDRDGTK--TYGG-----------YS 139
V + + C +C+ C+ G N C + T + DGT + G +S
Sbjct: 84 V-IPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFS 142
Query: 140 DLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVA 199
+ VV + V + PLD L C T Y + EPG + V GLG +G
Sbjct: 143 EYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAV 202
Query: 200 VKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK----VKAAM--GTMDYII 252
++ KA G ++ I +P K A K GA + D K V M G +DY
Sbjct: 203 IQGAKAAGASRIIGIDINPDKFELA-KKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTF 261
Query: 253 DTVSAVHSL-APLLGLLKVNGKLVTVGLPEKPLEV---PIFALVGARRLVGGSNVGGMK- 307
+ + V + A L K G V +G+ E+ P F LV R G+ GG K
Sbjct: 262 ECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRP-FQLVTGRV-WKGTAFGGWKS 319
Query: 308 --ETQEMLDFCAKHNIAADIELV--RM--DQINTAME 338
+ ++++ K I D E + M D+IN A +
Sbjct: 320 RSQVPKLVEDYMKGKIKVD-EFITHTMPLDEINEAFD 355
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368 |
| >gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 52/218 (23%), Positives = 82/218 (37%), Gaps = 49/218 (22%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
E G +V ++ G+ D + R+ P V G E G V VG V+ FK GD+
Sbjct: 23 EPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLPLPFVLGVEGAGVVEAVGPGVTGFKVGDR 81
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V Y G Y++ VV +++ P
Sbjct: 82 VA--------------------YA---------------GPPGAYAEYRVVPASRLVKLP 106
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGK----HLGVAGLGGLGHVAVKIGKAFGLK 209
D + + A LL G+T + ++ +PG H A GG+G + + KA G
Sbjct: 107 DGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVH---AAAGGVGLLLTQWAKALG-- 161
Query: 210 VTVISTSPKKESEAISK-LGADAFLVSSD---PAKVKA 243
TVI T +E +++ GAD + D +V+
Sbjct: 162 ATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVRE 199
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320 |
| >gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96
DV I++ + + + D + V YP +PG ++ GTV V +N +FK GD+V
Sbjct: 28 GDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTV--VESNDPRFKPGDEV-- 83
Query: 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNM 156
I+T + G +GGYS+ V +V+ P +
Sbjct: 84 ------------------------IVTSYDL---GVSHHGGYSEYARVPAEWVVPLPKGL 116
Query: 157 PLDAGAPLLCAGIT----VYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVT 211
L L AG T ++ ++ G+T + V G GG+G +AV I G +V
Sbjct: 117 TLKEAMILGTAGFTAALSIHR-LEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEV- 174
Query: 212 VISTSPKKESEAISKLGADAFLVSSD--PAKVKAAMGTM-DYIIDTVSAVHSLAPLLGLL 268
V ST ++ + KLGA + + +K +D V LA LL L
Sbjct: 175 VASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGKT-LAYLLSTL 233
Query: 269 KVNGKLVTVGL 279
+ G + GL
Sbjct: 234 QYGGSVAVSGL 244
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326 |
| >gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 59/272 (21%), Positives = 95/272 (34%), Gaps = 60/272 (22%)
Query: 32 RRETGADDVTIKILFCGICHSDLHC---ARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88
R G V +++ CG+C SDL R + P PGHE G V +G V
Sbjct: 14 RPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGL 73
Query: 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148
GD+V G +++ + D +
Sbjct: 74 AVGDRVAGLS------------------------------------GGAFAEYDLADADH 97
Query: 149 VLRFPDNMPLDA--GAPLLCA--GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGK 204
+ P + A G PL CA GK + V G G +G + +++
Sbjct: 98 AVPLPSLLDGQAFPGEPLGCALNVFRRGWI-------RAGKTVAVIGAGFIGLLFLQLAA 150
Query: 205 AFGLKVTVISTSPKKESEAISK-LGADAFLVSSDPAKVKAAMGTM------DYIIDTVSA 257
A G + VI+ + A+++ LGA +V+ D + + + D +I+ V
Sbjct: 151 AAGAR-RVIAIDRRPARLALARELGATE-VVTDDSEAIVERVRELTGGAGADVVIEAVGH 208
Query: 258 VHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPI 288
L L+ G+LV G + P VP
Sbjct: 209 QWPLDLAGELVAERGRLVIFGYHQDGPRPVPF 240
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312 |
| >gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 59/257 (22%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGH------EIVGTVTKVGNNVSKFKEG 91
+DV IK+ G+ +D + YP PG E+ G V VG++V +FKEG
Sbjct: 29 NDVLIKVSAAGVNRADTLQRQG-----KYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEG 83
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLR 151
D+V + +L GGY++ V + +V+
Sbjct: 84 DRV-MALL----------------------------------PGGGYAEYAVAHKGHVMH 108
Query: 152 FPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKV 210
P + A + A +T + +K +G + G+ + + AG G+G A ++ + +G
Sbjct: 109 IPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYG-AA 167
Query: 211 TVISTSPKKESEAISKLGADAFLVSSDPA------KVKAAMG--TMDYIIDTVSAVHSLA 262
T+I+TS +++ + KL A ++ P KVK G ++ ++D V + L+
Sbjct: 168 TIITTSSEEKVDFCKKLA--AIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSY-LS 224
Query: 263 PLLGLLKVNGKLVTVGL 279
+L V+GK + G
Sbjct: 225 ETAEVLAVDGKWIVYGF 241
|
Length = 334 |
| >gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 44/272 (16%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVTNYPIVP--------GHEIVGTVTKVGNNVSKFKE 90
D +K+L IC +DLH + + VP GHE VG V +VG+ V+ FK
Sbjct: 27 DAIVKMLKTTICGTDLHILKGD--------VPTVTPGRILGHEGVGVVEEVGSAVTNFKV 78
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPN--MILTYNSIDRDGTKT------YGGYSDLI 142
GD+V + ++SC C C++GL ++C + IL N I DGT+ + S
Sbjct: 79 GDRVLISC-ISSCGTCGYCRKGLYSHCESGGWILG-NLI--DGTQAEYVRIPHADNS--- 131
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
+ + P+ + +A L T Y G +PG + + G G +G A+
Sbjct: 132 ------LYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLT 185
Query: 203 GKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM-----GTMDYIIDTVS 256
+ + K+ ++ E KLGA + S+ ++ + +D +I+ V
Sbjct: 186 AQLYSPSKIIMVDLD-DNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVG 244
Query: 257 AVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI 288
+ L+ G + VG+ KP+++ +
Sbjct: 245 IPATFELCQELVAPGGHIANVGVHGKPVDLHL 276
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGV 98
D ++I IC SDLH R G +V GHE +G V +VG+ V K GD+V V
Sbjct: 27 DAIVRITTTAICGSDLHMYRGRTGA-EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPF 85
Query: 99 LVASCQKCESCQQGLENYCPNM 120
VA C +C +C++GL C +
Sbjct: 86 NVA-CGRCRNCKRGLTGVCLTV 106
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375 |
| >gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-12
Identities = 59/275 (21%), Positives = 105/275 (38%), Gaps = 72/275 (26%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
D+V +++ G+ D+ A P+ G E G VT+VG+ V+ K GD+V +G
Sbjct: 1 DEVEVEVKAAGLNFRDVLVALGLLPGDETPL--GLECSGIVTRVGSGVTGLKVGDRV-MG 57
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
+ G ++ + VD V++ PD++
Sbjct: 58 L-----------------------------------APGAFATHVRVDARLVVKIPDSLS 82
Query: 158 LDAGAPLLCAGITVYSPMKYYGMTE-----PGK----HLGVAGLGGLGHVAVKIGKAFGL 208
+ A L A +T YY + + G+ H A GG+G A+++ + G
Sbjct: 83 FEEAATLPVAYLTA-----YYALVDLARLQKGESVLIH---AAAGGVGQAAIQLAQHLGA 134
Query: 209 KV--TVISTSPKKESEAISKLGADAFLVSSD-----PAKVKAAMGT--MDYIIDTVSAVH 259
+V TV + K+ E + +LG + S + A G +D +++++S
Sbjct: 135 EVFATV-GSEEKR--EFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLS-GE 190
Query: 260 SLAPLLGLLKVNGKLVTVG----LPEKPLEVPIFA 290
L L G+ V +G L L + F
Sbjct: 191 LLRASWRCLAPFGRFVEIGKRDILSNSKLGMRPFL 225
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293 |
| >gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 86/345 (24%), Positives = 132/345 (38%), Gaps = 53/345 (15%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVTN-----YPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+V IKIL+ ICH+DL W N YP + GHE G V VG V K GD
Sbjct: 37 EVRIKILYTSICHTDLSA----WKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDH 92
Query: 94 VGVGVLVASCQKCESCQQGLENYCPN---------MIL---TYNSIDRDG--------TK 133
V + + C C C++ N C M+ T S DG T
Sbjct: 93 V-IPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTS 151
Query: 134 TYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLG 193
T+ Y+ V+D V++ N PL + L C T + G + + GLG
Sbjct: 152 TFTEYT---VLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLG 208
Query: 194 GLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK------VKAAMG 246
+G + +A G K+ + +P+K + ++G F+ D K + G
Sbjct: 209 AVGLAVAEGARARGASKIIGVDINPEKFEKG-KEMGITDFINPKDSDKPVHERIREMTGG 267
Query: 247 TMDYIIDTVSAVHSL-APLLGLLKVNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNV 303
+DY + V L L G V +G+ P +P+ L R + GS
Sbjct: 268 GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSIT-GSVF 326
Query: 304 GGMKETQEMLDFCAKHNIAADIEL-------VRMDQINTAMERLA 341
G K ++ + AK + + L + ++IN A + L
Sbjct: 327 GDFKGKSQLPNL-AKQCMQGVVNLDGFITHELPFEKINEAFQLLE 370
|
Length = 381 |
| >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-12
Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 16/241 (6%)
Query: 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLV-----ASCQKCESCQQGLENYCPNMI-L 122
V GHEIVG V + + +G + +G V C +C C++GL C ++
Sbjct: 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60
Query: 123 TYNSIDRDGTKTYGGYSDLIV-VDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT 181
+ ++D + GGY++ ++ PD++P AP CA TV + ++ G
Sbjct: 61 GHEALDSGWPLS-GGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDL 119
Query: 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241
+ G+ + V G G LG A A G V + E GA A A+
Sbjct: 120 K-GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAER 178
Query: 242 KAAM---GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG--LPEKPLEVPIFALVGARR 296
+ + +D ++ A ++ L L V G V G P P V + RR
Sbjct: 179 QGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGP--VALDPEQVVRR 236
Query: 297 L 297
Sbjct: 237 W 237
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 |
| >gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 9e-12
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 35/224 (15%)
Query: 36 GADDVTIKILFCGICHSDLHC---ARNEWGVTNY------PIVPGHEIVGTVTKVGNNVS 86
G ++ +K+ CGIC D+ C A + WG N P++PGHE VG V ++G
Sbjct: 23 GPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAE 82
Query: 87 K--FKEGDKVGVGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTKTYGGYSD-LI 142
+ K GD+V + + C C C +G C + + + GG ++ +
Sbjct: 83 ERGVKVGDRV-ISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQ------NNVNGGMAEYMR 135
Query: 143 VVDQHYVLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLG--GLGH 197
+ V + PD++P + PL CA V + + +AG G GLG
Sbjct: 136 FPKEAIVHKVPDDIPPEDAILIEPLACALHAVDR-----ANIKFDDVVVLAGAGPLGLGM 190
Query: 198 VAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241
+ K+ V+ ++ + A K GAD V +P +V
Sbjct: 191 IGA-ARLKNPKKLIVLDLKDERLALA-RKFGAD---VVLNPPEV 229
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350 |
| >gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 71/324 (21%), Positives = 122/324 (37%), Gaps = 57/324 (17%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
E V I++ G+ S++ + +P V G E VG V + F G +
Sbjct: 24 EPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTPGQR 81
Query: 94 V-----GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148
V G+G T++ G Y++ +V
Sbjct: 82 VATAMGGMG------------------------RTFD----------GSYAEYTLVPNEQ 107
Query: 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFG 207
V ++ A L T + + +PG L + G +G A+K+ KA G
Sbjct: 108 VYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALG 167
Query: 208 LKVTVISTSPKKESEAISKLGADAFLV--SSDPAKVKAAMGTMDYIIDTVSAVHSLAPLL 265
VT + SP++ + +LGAD ++ + +++AA G D +++ V +L L
Sbjct: 168 ATVTATTRSPERA-ALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGTA-TLKDSL 225
Query: 266 GLLKVNGKLVTVGLPEKPLEVPIFALV-----GARRLVGGSNVGGMKET--QEMLDFCAK 318
L+ G + GL + F + G + GS+ G + +T QE+ DF A
Sbjct: 226 RHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAA 285
Query: 319 HNIAADIELV-RMDQINTA---ME 338
++ V D+I A ME
Sbjct: 286 GHLDIPPSKVFTFDEIVEAHAYME 309
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320 |
| >gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 33/166 (19%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P + G ++ G V VG V++F+ GD+V C +
Sbjct: 58 PAILGCDVAGVVEAVGEGVTRFRVGDEV--------------------YGCAGGLG---- 93
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186
G ++ VVD + P N+ + A L GIT + + + G+
Sbjct: 94 ------GLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQT 147
Query: 187 LGV-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA 231
+ + G GG+GHVAV++ KA G +V ++S K LGAD
Sbjct: 148 VLIHGGAGGVGHVAVQLAKAAGARVYATASSEKA--AFARSLGADP 191
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326 |
| >gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
G +D ++ C SD+H + ++ GHE VG V +VG+ V FK G
Sbjct: 19 IPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPG 78
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNM 120
D+V V + + + Q+G + M
Sbjct: 79 DRVIVPA-ITPDWRSVAAQRGYPSQSGGM 106
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351 |
| >gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 36/188 (19%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEW-GVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
G +V I++ + DL C R + + YP PG E G V VG +V++ GD
Sbjct: 4 PPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGD 63
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+V G ++ GG++ L+ V + V+R
Sbjct: 64 EVIAGT---------------------------------GESMGGHATLVTVPEDQVVRK 90
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVT 211
P ++ + L +TV G+ G+H+ + GG G +AV++ + G ++
Sbjct: 91 PASLSFEEACALPVVFLTVIDAFARAGL-AKGEHILIQTATGGTGLMAVQLARLKGAEIY 149
Query: 212 VISTSPKK 219
++S K
Sbjct: 150 ATASSDDK 157
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303 |
| >gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96
D +++ IC SDLH + GHE +G V +VG V K GD+V V
Sbjct: 25 PTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVGDRV-V 83
Query: 97 GVLVASCQKCESCQQGLENYCPN------MILTYNSIDRDGTKTYG--GYSDL 141
+C +C C++GL + C N M Y G G GYS L
Sbjct: 84 VPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLY------GHAGAGIFGYSHL 130
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386 |
| >gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 86/338 (25%), Positives = 137/338 (40%), Gaps = 60/338 (17%)
Query: 37 ADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
DV I++ + + + D A GVT NYP PG + GTV + +F+EGD+V
Sbjct: 27 EGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSSDDP--RFREGDEV- 83
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
LV L G T GG+++ + V +V+ P+
Sbjct: 84 ---LVTGY--------DL-----------------GMNTDGGFAEYVRVPADWVVPLPEG 115
Query: 156 M-PLDA---GAPLLCAGITVYSPMKYYGMT-EPGKHLGVAGL-GGLGHVAVKIGKAFGLK 209
+ +A G A ++V+ ++ G T E G L V G GG+G +AV I G
Sbjct: 116 LSLREAMILGTAGFTAALSVH-RLEDNGQTPEDGPVL-VTGATGGVGSIAVAILAKLGYT 173
Query: 210 VTVISTSPKKESEAISKLGA------DAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263
V ++ ++ + + LGA + L S +KA IDTV LA
Sbjct: 174 VVALTGKEEQA-DYLKSLGASEVLDREDLLDESKKPLLKA---RWAGAIDTVGG-DVLAN 228
Query: 264 LLGLLKVNGKLVTVGL---PEKPLEVPIFALVGARRLVG-GSNVGGMKETQEMLDFCAKH 319
LL K G + + G PE V F L G L+G S M+ +++ A
Sbjct: 229 LLKQTKYGGVVASCGNAAGPELTTTVLPFILRG-VSLLGIDSVNCPMELRKQVWQKLATE 287
Query: 320 -NIAADIELVR---MDQINTAMERLAKSDVKYRFVIDV 353
+VR ++++ A++RL + R V+ +
Sbjct: 288 WKPDLLEIVVREISLEELPEAIDRLLAGKHRGRTVVKI 325
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325 |
| >gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-10
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 38 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
D I+++ +C SDL R T P GHE VG V +VG+ V+ K GD V +
Sbjct: 26 TDAVIRVVATCVCGSDLWPYRGVSP-TRAPAPIGHEFVGVVEEVGSEVTSVKPGDFV-IA 83
Query: 98 VLVASCQKCESCQQGLENYCPN 119
S C C+ G C +
Sbjct: 84 PFAISDGTCPFCRAGFTTSCVH 105
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345 |
| >gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 3e-09
Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 59/190 (31%)
Query: 42 IKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVA 101
I++ G+ D+ A G+ V G E G VT+VG V+ GD+V
Sbjct: 1 IEVRAAGLNFRDVLIAL---GLYPGEAVLGGECAGVVTRVGPGVTGLAVGDRV------- 50
Query: 102 SCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAG 161
M L G ++ +V D V+ PD +
Sbjct: 51 ------------------MGLAP-----------GAFATRVVTDARLVVPIPDGWSFEEA 81
Query: 162 APLLCAGITVYSPMKYYGMTEPGK---------HLGVAGLGGLGHVAVKIGKAFGLKV-- 210
A + +T YY + + + H A GG+G A+++ + G +V
Sbjct: 82 ATVPVVFLTA-----YYALVDLARLRPGESVLIH---AAAGGVGQAAIQLARHLGAEVFA 133
Query: 211 TVISTSPKKE 220
T + K++
Sbjct: 134 TA-GSPEKRD 142
|
Enoylreductase in Polyketide synthases. Length = 287 |
| >gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-09
Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 49/231 (21%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKV---GVGVLVASCQKCESCQQGLENYCPNMILT 123
P + G + G V VG+ V+ FK GD+V G
Sbjct: 60 PKILGWDASGVVEAVGSEVTLFKVGDEVYYAG---------------------------- 91
Query: 124 YNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY-SPMKYYGMTE 182
I R G+ ++ +VD+ V P ++ A L +T + + G++E
Sbjct: 92 --DITRPGS-----NAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISE 144
Query: 183 PGKHLG-----VAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA-ISKLGADAFLVSS 236
++ G + G GG+G +A+++ K +TVI+T+ + ES A + +LGAD +
Sbjct: 145 DAENEGKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRPESIAWVKELGADHVINHH 203
Query: 237 DPAKV---KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL 284
+ +DYI + L+ G + + P++PL
Sbjct: 204 QDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQEPL 254
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336 |
| >gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 50/216 (23%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P+ PG+ VG V +VG+ V+ FK GD V
Sbjct: 21 PLPPGYSSVGRVVEVGSGVTGFKPGD------RVFC------------------------ 50
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186
+G +++ +VV + ++ PD +P + A T + G+ +
Sbjct: 51 --------FGPHAERVVVPANLLVPLPDGLPPERAAL------TALAATALNGVRDAEPR 96
Query: 187 LG----VAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVK 242
LG V GLG +G +A ++ KA G V+ P +++ A V++D A
Sbjct: 97 LGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEALGPADPVAADTADEI 155
Query: 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278
G D +I+ + +L L LL+ G++V VG
Sbjct: 156 GGRG-ADVVIEASGSPSALETALRLLRDRGRVVLVG 190
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277 |
| >gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 40 VTIKILFCGICHSDLHCARNEWGVTNYP--IVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
V +K++ IC SD H R G T P +V GHEI G V + G +V K GD V V
Sbjct: 36 VILKVVTTNICGSDQHMVR---GRTTAPTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVP 92
Query: 98 VLVASCQKCESCQQGLENYCPNMI-----LTYNSIDRDGTKTYGGYSDLIVVD--QHYVL 150
+A C +C +C++G C N+ Y +D G GG S+ ++V +L
Sbjct: 93 FNIA-CGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGG--WVGGQSEYVMVPYADFNLL 149
Query: 151 RFPD-NMPLDAGAPLLCAGITVYSPMKYYGM----TEPGKHLGVAGLGGLGHVAVKIGKA 205
+FPD + L+ L ++ P Y+G PG + +AG G +G A +
Sbjct: 150 KFPDRDQALEKIRDLTM--LSDIFPTGYHGAVTAGVGPGSTVYIAGAGPVGLAAAASAQL 207
Query: 206 FGLKVTVI 213
G V ++
Sbjct: 208 LGAAVVIV 215
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393 |
| >gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 68/269 (25%), Positives = 103/269 (38%), Gaps = 48/269 (17%)
Query: 36 GADDVTIKILFCGICHSDL--------------------HCARNEWGVTNYPIVPGHEIV 75
+V I++ CG+ ++D+ A G ++P + G +IV
Sbjct: 27 APGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIV 86
Query: 76 GTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY 135
G V VG V ++G VLV + + P I S +RD
Sbjct: 87 GRVVAVGEGVD----TARIGERVLV------DPSIRDPPEDDPADIDYIGS-ERD----- 130
Query: 136 GGYSDLIVVDQHYVLRFPDNMPLD--AGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL- 192
GG+++ VV +P N PL A C+ T + M G+ + V G
Sbjct: 131 GGFAEYTVVPAENA--YPVNSPLSDVELATFPCSYSTAEN-MLERAGVGAGETVLVTGAS 187
Query: 193 GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM---GTMD 249
GG+G V++ K G V + KE EA+ LGAD ++ P A +D
Sbjct: 188 GGVGSALVQLAKRRGAIVIAV-AGAAKE-EAVRALGADTVILRDAPLLADAKALGGEPVD 245
Query: 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278
+ D V LL LL+ G+ VT G
Sbjct: 246 VVADVV-GGPLFPDLLRLLRPGGRYVTAG 273
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350 |
| >gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-08
Identities = 52/197 (26%), Positives = 73/197 (37%), Gaps = 41/197 (20%)
Query: 36 GADDVTIKILFCGICHSDL-HCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G +V +K F GI SD+ A P G E VG V VG V+ FK GD V
Sbjct: 29 GPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAV 88
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
T ++G +++ VV + + P+
Sbjct: 89 A------------------------------------TMSFGAFAEYQVVPARHAVPVPE 112
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVI 213
P PLL +G+T ++ G M L A GG G AV++ K G V
Sbjct: 113 LKP--EVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGT 170
Query: 214 STSPKKESEAISKLGAD 230
+S +K E + LG D
Sbjct: 171 CSSDEKA-EFLKSLGCD 186
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
| >gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 62/285 (21%), Positives = 106/285 (37%), Gaps = 80/285 (28%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPI----------VPGHEIVGTVTKVGN 83
++V +K+L I +D++ + GV YPI V G+E VG V KVG+
Sbjct: 26 PGPPNEVLVKMLAAPINPADINQIQ---GV--YPIKPPTTPEPPAVGGNEGVGEVVKVGS 80
Query: 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLI 142
V K GD V+ P + GT +T+
Sbjct: 81 GVKSLKPGDW----VIPLR---------------PGL----------GTWRTHA------ 105
Query: 143 VVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV--AGLGGLGHVAV 200
VV +++ P+++ + A L T Y ++ + +PG + + +G +
Sbjct: 106 VVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWV-IQNGANSAVGQAVI 164
Query: 201 KIGKAFGLK-VTVISTSPKKESEA--ISKLGADAFLVSSD--------------PAKVKA 243
++ K G+K + V+ P E + LGAD L + + K
Sbjct: 165 QLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKL 224
Query: 244 AMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG-LPEKPLEVP 287
A ++ V + L LL G +VT G + +P+ VP
Sbjct: 225 A-------LNCVGGKSATE-LARLLSPGGTMVTYGGMSGQPVTVP 261
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341 |
| >gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 80/337 (23%), Positives = 128/337 (37%), Gaps = 50/337 (14%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVTN-YPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
++ IK++ +C SDL + W +P + GHE G V +G V++F++GD V +
Sbjct: 39 EIRIKVVSTSLCRSDL----SAWESQALFPRIFGHEASGIVESIGEGVTEFEKGDHV-LT 93
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKT--------------YGGYSDLIV 143
V C C C G N C + L + KT +S+ V
Sbjct: 94 VFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTV 153
Query: 144 VDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIG 203
V ++ PL L C G + + GLG +G +
Sbjct: 154 VHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGA 213
Query: 204 KAFGL-KVTVISTSPKKESEAISKLGADAFLVSSD-----PAKVKAAM-GTMDYIIDTV- 255
K G ++ + +P+K +A G F+ +D +K G DY + V
Sbjct: 214 KLRGASQIIGVDINPEKAEKA-KTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG 272
Query: 256 ------SAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI-FALVGARRLVGGSNVGGMKE 308
+A+ S + GL VT+G+P+ EV + L + R + GS GG K
Sbjct: 273 DTGIATTALQSCSDGWGL------TVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKP 326
Query: 309 TQE---MLDFCAKHNIAADIELVR----MDQINTAME 338
+ ++D I D E + D+IN A E
Sbjct: 327 KSDLPSLVDKYMNKEIMID-EFITHNLSFDEINKAFE 362
|
Length = 378 |
| >gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 136 GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGL 195
GGY++L V D + PD + L+A ++ G T + +T L A GGL
Sbjct: 96 GGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGL 155
Query: 196 GHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMG--TMDY 250
G + V++ KA G V + P K + + LGAD + + P +V+ A+G +
Sbjct: 156 GSLLVQLAKAAGATVVGAAGGPAK-TALVRALGADVAVDYTRPDWPDQVREALGGGGVTV 214
Query: 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280
++D V A L LL G+ +T G
Sbjct: 215 VLDGVGGAIGRAA-LALLAPGGRFLTYGWA 243
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
| >gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 33/223 (14%)
Query: 34 ETGADDVTIKILFCGICHSDLHCA----------RNEWGVTNYPIVPGHEIVGTVTKVGN 83
E G +V + ++ G+ ++++ A R G + G + G V VG
Sbjct: 39 ELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGE 98
Query: 84 NVSKFKEGDKVGVGVLVASC----QKCESCQQGLENYCPNM-ILTYNSIDRDGTKTYGGY 138
V +K GD+V V C G + P+ I Y + YG +
Sbjct: 99 GVKNWKVGDEV-----VVHCSVWDGNDPERAGGDPMFDPSQRIWGYET-------NYGSF 146
Query: 139 SDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPM---KYYGMTEPGKHLGVAGLGGL 195
+ +V ++ P ++ + A + G T Y + + L GGL
Sbjct: 147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGL 206
Query: 196 GHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSD 237
G +A+++ +A G V V+S S +K +E LGA+ + D
Sbjct: 207 GSMAIQLARAAGANPVAVVS-SEEK-AEYCRALGAEGVINRRD 247
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393 |
| >gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 50/234 (21%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P + G + G V VG+ V+ FK GD+V
Sbjct: 59 PKILGWDAAGVVVAVGDEVTLFKPGDEVWYA---------------------------GD 91
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYS--------PMKYY 178
IDR G+ ++ +VD+ V P ++ A L IT +
Sbjct: 92 IDRPGS-----NAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVA 146
Query: 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA-ISKLGADAFLVSSD 237
G L + G GG+G + +++ + +TVI+T+ + ES+ + +LGA + S
Sbjct: 147 GD--KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLELGAHHVIDHSK 203
Query: 238 PAKV---KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI 288
P K K + + Y+ ++ LL G+ L + P E+ I
Sbjct: 204 PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRF---ALIDDPAELDI 254
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336 |
| >gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 134 TYGGYSDLIVVDQHYVLRFPDN-MPLDA-----GAPLLCAGITVYSPMKYYGMTEPGKHL 187
G+ + + D + + + PL A G P G+T Y + G + G+ +
Sbjct: 99 GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMP----GLTAYFGLLDIGQPKAGETV 154
Query: 188 GVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL--VSSDPAKV--K 242
V+ G +G V +I K G +V I+ +K +LG DA + + D A+ +
Sbjct: 155 VVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKE 214
Query: 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGL------PEKPLEVPIFALVGARR 296
A +D + V A L LL + ++ G PE P L+ A+R
Sbjct: 215 ACPKGIDVYFENVGGEVLDAVLP-LLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKR 273
Query: 297 LV 298
L
Sbjct: 274 LR 275
|
Length = 340 |
| >gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 35/195 (17%)
Query: 30 FSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89
F+ + ++V ++ GI + D + + + P G E G V+KVG+ V K
Sbjct: 21 FTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
GD+V Q L G YS + V
Sbjct: 81 VGDRVVY------------AQSAL----------------------GAYSSVHNVPADKA 106
Query: 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGK-HLGVAGLGGLGHVAVKIGKAFGL 208
PD + + A G+TVY ++ +P + L A GG+G +A + KA G
Sbjct: 107 AILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA 166
Query: 209 KVTVISTSPKKESEA 223
K+ S +K A
Sbjct: 167 KLIGTVGSAQKAQRA 181
|
Length = 327 |
| >gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 47/212 (22%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTN-YPIVPGHEIVGTVTKVGNNVSKFKEGD 92
E G +V IK+ I SDL + ++G T P+ PG E GTV G
Sbjct: 27 EPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGG-----GPLA 81
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+ +G VA + YG Y++ V D L
Sbjct: 82 QSLIGKRVA----FLAGS------------------------YGTYAEYAVADAQQCLPL 113
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV------AGLGGLGHVAVKIGKAF 206
PD + + GA + + +P+ GM E + G A LG + V++ KA
Sbjct: 114 PDGVSFEQGA---SSFV---NPLTALGMLETAREEGAKAVVHTAAASALGRMLVRLCKAD 167
Query: 207 GLKVTVISTSPKKESEAISKLGADAFLVSSDP 238
G+KV I ++ + + K+GA+ L SSDP
Sbjct: 168 GIKVINIVRRKEQV-DLLKKIGAEYVLNSSDP 198
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
| >gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 71/313 (22%), Positives = 120/313 (38%), Gaps = 48/313 (15%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
GA +V ++ I + DL R +G P + G E VG V VG V +G
Sbjct: 25 TPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGV----KGL 80
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+VG V VA G +++ V ++
Sbjct: 81 QVGQRVAVAPVH-------------------------------GTWAEYFVAPADGLVPL 109
Query: 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVT 211
PD + + A L+ ++ + + G+ +PG+ L GG +G + + A G+ V
Sbjct: 110 PDGISDEVAAQLIAMPLSALMLLDFLGV-KPGQWLIQNAAGGAVGKLVAMLAAARGINVI 168
Query: 212 VISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMG--TMDYIIDTVSAVHSLAPLLG 266
+ +E + LG + + P KV+ A G + +D+V LL
Sbjct: 169 NLVRRDAGVAE-LRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGG-KLAGELLS 226
Query: 267 LLKVNGKLVTVG-LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI 325
LL G LV+ G + +P+++ L+ + V G G + +QEM K IA +
Sbjct: 227 LLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGG--RWSQEMSVEYRKRMIAELL 284
Query: 326 ELVRMDQINTAME 338
L Q+ +E
Sbjct: 285 TLALKGQLLLPVE 297
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKE 220
G GK LG+ GLG +G +IG+AFG++V S++ E
Sbjct: 137 GTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTAE 178
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA 229
+ P+ + G GK +G+ G G +G + K FG+++ S + K E+E +LGA
Sbjct: 136 VAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE--KELGA 193
Query: 230 D 230
+
Sbjct: 194 E 194
|
Length = 333 |
| >gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASC----QKCESCQQGLENYCPNM-ILT 123
+ G + G V +VG V+++K GD+V VASC + G I
Sbjct: 80 IIGSDASGVVWRVGPGVTRWKVGDEV-----VASCLQVDLTAPDGRDGDPMLSSEQRIWG 134
Query: 124 YNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPL-DAGAPLLCAGITVYSPMKYYGMTE 182
Y + +G +++ +V + ++ P ++ +A P L T Y + +
Sbjct: 135 YET-------NFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGA-TAYRQLVGWNPAA 186
Query: 183 --PGKHLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSD 237
PG ++ + G GGLG A ++ +A G V V+S SP+K +E LGA+A + +D
Sbjct: 187 VKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVS-SPEK-AEYCRSLGAEAVIDRND 243
|
The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398 |
| >gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 50/213 (23%)
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNV-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPN 119
+ G + G + KVG+NV S++K GD+V G+ P
Sbjct: 53 FHFKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEV----------------CGI-YPHPY 95
Query: 120 MILTYNSIDRDGTKTYGGYSDLIVVD---QHYVL-RFPDNMPLD-AGAPLLCAGITVYSP 174
G S ++VD + R P+N+ L+ A A L G T Y
Sbjct: 96 -------------GGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLG-TAYQI 141
Query: 175 MKYYGMTEPGKHLGVAGLGG---LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA 231
++ G + G V LGG +G A+++ K TV+ T + +E KLGAD
Sbjct: 142 LEDLGQ-KLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKLGADH 200
Query: 232 FLVSSDPAKVK---------AAMGTMDYIIDTV 255
F+ + VK G D I+D V
Sbjct: 201 FIDYDAHSGVKLLKPVLENVKGQGKFDLILDCV 233
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352 |
| >gnl|CDD|130269 TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 54/228 (23%), Positives = 76/228 (33%), Gaps = 44/228 (19%)
Query: 66 YPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN 125
YP+VPG+E VG V + G + G + G V V C +GL
Sbjct: 58 YPLVPGYESVGRVVEAGPDT-----GFRPGDRVFVPG-SNCYEDVRGL------------ 99
Query: 126 SIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGK 185
+GG S +V V R L LL T + G
Sbjct: 100 ---------FGGASKRLVTPASRVCRLDPA--LGPQGALLALAATARHAVA--GAEVKVL 146
Query: 186 HLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA 244
+ G G LG + ++ KA G V T+P++ A L DP K
Sbjct: 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG----YEVL---DPEK--DP 197
Query: 245 MGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLE---VPIF 289
I D + L+ L G++V G +P+ VP F
Sbjct: 198 RRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAF 245
|
[Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 308 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD 237
GK G+ GLG +G KI +AFG KV STS K ++E ++ + L +SD
Sbjct: 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSD 198
|
Length = 311 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 184 GKHLGVAGLGGLG-HVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVK 242
GK + + GLG +G +A + KAFG++V + S + + ++ P ++
Sbjct: 134 GKTVLIVGLGDIGREIA-RRAKAFGMRVIGVRRSGRPAPPVVDEVYT--------PDELD 184
Query: 243 AAMGTMDYII 252
+ DY++
Sbjct: 185 ELLPEADYVV 194
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 74/318 (23%), Positives = 128/318 (40%), Gaps = 74/318 (23%)
Query: 63 VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV---GVGVLVASCQKCESCQQGLENYCPN 119
V +P+VPG ++ GTV + + +FK GD+V G GV
Sbjct: 54 VRTFPLVPGIDLAGTVVESSS--PRFKPGDRVVLTGWGV--------------------- 90
Query: 120 MILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNM-PLDAGAPLLCAGITVYSPM--- 175
G + +GGY+ V +++ P+ + A A + AG ++ M
Sbjct: 91 -----------GERHWGGYAQRARVKADWLVPLPEGLSARQAMA-IGTAG---FTAMLCV 135
Query: 176 ---KYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA 231
+ +G+T + V G GG+G VAV + G +V + P +E++ + LGA
Sbjct: 136 MALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRP-EEADYLRSLGASE 194
Query: 232 FL---VSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGL---PEKPLE 285
+ S+P + +DTV H+LA +L + G + GL + P
Sbjct: 195 IIDRAELSEPGRPLQK-ERWAGAVDTVGG-HTLANVLAQTRYGGAVAACGLAGGADLPTT 252
Query: 286 VPIFALVGARRLVG-GSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINT--------- 335
V F L G L+G S + ++ + A +A D++ ++ +
Sbjct: 253 VMPFILRGV-TLLGIDSVMAPIERRRA-----AWARLARDLDPALLEALTREIPLADVPD 306
Query: 336 AMERLAKSDVKYRFVIDV 353
A E + V+ R V+DV
Sbjct: 307 AAEAILAGQVRGRVVVDV 324
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD 237
GK LG+ G G +G +I +AFG+KV + + + D L SD
Sbjct: 147 GKTLGIIGYGNIGQAVARIARAFGMKV-LFAERKGAPPLREGYVSLDELLAQSD 199
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-04
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA--ISKLGA 229
+ P G GK +G+ GLG +G + KAFG+KV PK E+EA +
Sbjct: 23 WRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKVIAYDRYPKAEAEALGARYVSL 82
Query: 230 DAFLVSSD 237
D L SD
Sbjct: 83 DELLAESD 90
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 227 LGADAFLVSSDPAKVKAAMGT-MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLE 285
LGAD + + +A G +D ++DTV +L L LK G+LV++G P+ L
Sbjct: 1 LGADEVIDYTTEDFEEATAGEGVDVVLDTV-GGETLLRALLALKPGGRLVSIGGPDLLLS 59
Query: 286 VPIFALVGARR---LVGGSNVGGMKETQEMLDFCAKHNIAADIELV-RMDQINTAMERLA 341
V A R L S + E+ + + I+ V +++ A L
Sbjct: 60 VAAKAGGRGVRGVFLFPVSPGEAGADLAELAELVEAGKLRPVIDRVFPLEEAAEAHRYLE 119
|
Length = 129 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 30/108 (27%)
Query: 184 GKHLGVAGLGGLG-HVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVK 242
GK +G+ G G +G +A ++ KAFG++V +S SPK++ GAD SD
Sbjct: 137 GKTVGILGYGHIGREIA-RLLKAFGMRVIGVSRSPKEDE------GADFVGTLSDL---D 186
Query: 243 AAMGTMDYIIDTVSAVHSLAPL------------LGLLKVNGKLVTVG 278
A+ D ++ PL L +K LV VG
Sbjct: 187 EALEQADVVVVA-------LPLTKQTRGLIGAAELAAMKPGAILVNVG 227
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA--ISKLGADAFLVSSD 237
GK +G+ G G +G ++ KAFG KV S S K+E++A I + D L SD
Sbjct: 144 GKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEKEEAKALGIEYVSLDELLAESD 199
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223
GK +G+ GLG +G K +AFG+KV + K E E
Sbjct: 140 GKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEE 179
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 53/236 (22%), Positives = 83/236 (35%), Gaps = 53/236 (22%)
Query: 75 VGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKT 134
VG V + + FK GD V S G + Y
Sbjct: 73 VGEVVESRS--PDFKVGDLV-------------SGFLGWQEYA----------------- 100
Query: 135 YGGYSDLIVVDQHYVLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGV-A 190
+V + + ++ L A L G+T Y + G +PG+ + V A
Sbjct: 101 -------VVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSA 153
Query: 191 GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV--SSDPAKV--KAAMG 246
G +G V +I K G +V I+ S +K + +LG DA + + D A+ +AA
Sbjct: 154 AAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPD 213
Query: 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGL-----PEKPLEVPIFALVGARRL 297
+D D V L L LL G++ G +P + +RL
Sbjct: 214 GIDVYFDNVGGEI-LDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRL 268
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 100.0 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 100.0 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 100.0 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 100.0 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 100.0 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 100.0 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 100.0 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 100.0 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 100.0 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 100.0 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 100.0 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 100.0 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 100.0 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 100.0 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 100.0 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 100.0 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 100.0 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 100.0 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 100.0 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 100.0 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 100.0 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 100.0 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 100.0 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 100.0 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 100.0 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 100.0 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 100.0 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 100.0 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 100.0 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 100.0 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 100.0 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 100.0 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 100.0 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 100.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 100.0 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 100.0 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 100.0 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 100.0 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 100.0 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 100.0 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 100.0 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 100.0 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 100.0 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 100.0 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 100.0 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 100.0 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 100.0 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 100.0 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 100.0 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 100.0 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 100.0 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 100.0 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 100.0 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 100.0 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 100.0 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 100.0 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 100.0 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 100.0 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 100.0 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 100.0 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 100.0 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 100.0 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 100.0 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 100.0 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 100.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 100.0 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 100.0 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 100.0 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 100.0 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 100.0 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 100.0 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 100.0 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 100.0 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 100.0 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 100.0 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 100.0 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 100.0 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 100.0 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 100.0 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 100.0 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 100.0 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 100.0 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 100.0 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 100.0 | |
| cd08249 | 339 | enoyl_reductase_like enoyl_reductase_like. Member | 100.0 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 100.0 | |
| cd08288 | 324 | MDR_yhdh Yhdh putative quinone oxidoreductases. Yh | 100.0 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 100.0 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 100.0 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 100.0 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 100.0 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 100.0 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 100.0 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08272 | 326 | MDR6 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 100.0 | |
| cd08271 | 325 | MDR5 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 100.0 | |
| cd08247 | 352 | AST1_like AST1 is a cytoplasmic protein associated | 100.0 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 100.0 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd08251 | 303 | polyketide_synthase polyketide synthase. Polyketid | 100.0 | |
| cd08275 | 337 | MDR3 Medium chain dehydrogenases/reductase (MDR)/z | 100.0 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 99.98 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 99.97 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 99.97 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 99.96 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.96 | |
| PF08240 | 109 | ADH_N: Alcohol dehydrogenase GroES-like domain; In | 99.9 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 99.75 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.55 | |
| PF13602 | 127 | ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ | 99.5 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 99.42 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.79 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.68 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.68 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.68 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.48 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.44 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 98.44 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.44 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.32 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 98.32 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.25 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.25 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.13 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 98.1 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.07 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 98.05 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.77 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.73 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.71 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.67 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.66 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.65 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 97.64 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.62 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 97.59 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.54 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 97.52 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.51 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.5 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 97.5 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.45 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 97.43 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.39 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.39 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.38 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.38 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.38 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 97.37 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 97.37 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.37 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 97.29 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.28 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 97.28 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 97.27 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.25 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.24 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.23 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.21 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.2 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.2 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 97.19 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 97.18 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.18 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.18 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.14 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.12 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 97.11 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.1 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 97.1 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.09 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 97.09 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 97.07 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.07 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.05 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 97.05 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.04 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.03 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.03 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 97.03 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.03 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.02 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 97.0 | |
| PF11017 | 314 | DUF2855: Protein of unknown function (DUF2855); In | 96.98 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.96 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.95 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 96.95 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 96.95 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 96.95 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 96.94 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.93 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 96.93 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 96.93 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.92 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 96.92 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.92 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 96.91 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 96.91 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 96.91 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 96.91 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 96.9 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 96.88 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.84 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.82 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 96.82 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.81 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.81 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 96.8 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 96.8 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 96.78 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 96.78 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 96.76 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.76 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 96.75 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 96.74 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.72 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 96.72 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 96.71 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 96.71 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.7 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 96.7 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.7 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 96.69 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 96.69 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 96.68 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.67 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.67 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 96.67 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 96.66 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 96.66 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 96.66 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.64 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.64 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 96.64 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 96.62 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 96.61 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.6 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 96.59 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 96.59 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 96.58 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.57 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 96.57 | |
| PRK05717 | 255 | oxidoreductase; Validated | 96.56 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 96.56 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 96.56 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 96.56 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 96.55 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 96.55 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.55 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 96.55 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 96.53 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 96.53 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.52 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 96.52 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.51 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.5 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 96.5 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 96.5 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.49 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 96.48 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.46 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.46 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.46 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 96.46 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.46 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 96.46 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 96.41 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.4 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.39 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 96.39 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.38 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 96.38 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.36 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.36 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 96.36 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 96.35 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 96.34 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.34 | |
| PRK08643 | 256 | acetoin reductase; Validated | 96.33 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.33 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 96.32 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 96.31 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 96.31 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 96.3 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 96.3 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 96.3 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 96.3 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 96.29 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 96.28 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 96.27 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 96.25 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.25 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 96.25 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 96.23 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 96.23 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 96.22 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 96.19 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 96.19 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 96.18 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.18 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 96.18 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.17 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 96.17 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 96.16 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.16 | |
| PLN02366 | 308 | spermidine synthase | 96.16 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.15 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.15 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.14 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.14 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 96.14 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 96.13 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 96.11 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 96.11 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 96.1 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 96.1 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.09 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 96.09 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 96.09 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 96.09 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.08 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.08 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 96.08 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 96.08 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.07 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.06 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 96.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.04 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 96.04 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.04 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 96.02 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 96.01 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 96.01 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.01 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 96.01 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 96.0 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.99 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.98 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 95.98 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 95.97 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.97 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 95.95 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.94 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.94 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 95.93 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.93 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 95.92 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.92 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 95.92 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.91 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 95.91 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 95.91 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.9 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.9 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 95.88 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.88 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 95.88 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 95.87 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 95.87 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 95.87 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.85 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 95.85 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.85 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 95.83 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 95.82 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 95.82 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 95.81 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.81 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 95.81 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 95.81 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.8 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.79 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.79 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 95.78 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.78 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 95.78 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 95.77 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 95.77 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.77 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.77 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.76 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 95.76 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 95.75 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 95.74 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.73 | |
| PRK04266 | 226 | fibrillarin; Provisional | 95.73 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 95.73 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.72 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.72 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.72 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.71 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.71 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.7 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 95.69 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 95.69 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 95.68 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.67 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.66 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 95.66 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.65 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.64 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.64 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.64 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 95.64 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 95.64 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 95.63 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.63 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 95.63 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.62 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 95.62 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.62 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 95.62 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 95.62 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 95.61 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 95.61 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.6 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.6 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.59 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 95.58 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.58 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 95.57 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 95.57 | |
| PLN02823 | 336 | spermine synthase | 95.56 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 95.54 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.53 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 95.51 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.51 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 95.5 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 95.49 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 95.48 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 95.47 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 95.47 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 95.47 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.47 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.46 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 95.46 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 95.46 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 95.46 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.45 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 95.45 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 95.45 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.44 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 95.44 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.43 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.42 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 95.42 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 95.41 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 95.4 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 95.39 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 95.38 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 95.36 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 95.36 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 95.35 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 95.34 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.33 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 95.33 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.32 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.32 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 95.32 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 95.31 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 95.31 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 95.29 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 95.29 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 95.29 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.28 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.28 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.27 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 95.27 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 95.25 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 95.23 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.23 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 95.21 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.2 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 95.19 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 95.18 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 95.18 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 95.18 |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=470.78 Aligned_cols=334 Identities=44% Similarity=0.713 Sum_probs=310.0
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
.+||+.++..++++ +++.+++.|+|+++||+|+|+++|+|++|+|..+|.++...+|.+||||.+|+|+++|++|++|
T Consensus 2 ~~mkA~~~~~~~~p--l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~ 79 (339)
T COG1064 2 MTMKAAVLKKFGQP--LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGL 79 (339)
T ss_pred cceEEEEEccCCCC--ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccC
Confidence 47888888866555 8999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||||.+.+...+|++|++|+.|..+.|++..+. |.+.+|+|+||+++|+++++++|+++++++||++.|++
T Consensus 80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~-------gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaG 152 (339)
T COG1064 80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKIT-------GYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAG 152 (339)
T ss_pred CCCCEEEecCccCCCCCCccccCcccccCCCcccc-------ceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCe
Confidence 99999998566679999999999999999986544 55688999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCc
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 248 (359)
.|.|++|+.... +||++|+|.|.|++|.+++|+|+++|++|+++++++++++.+ +++|++++++.++++..+.+.+.+
T Consensus 153 iT~y~alk~~~~-~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a-~~lGAd~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 153 ITTYRALKKANV-KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELA-KKLGADHVINSSDSDALEAVKEIA 230 (339)
T ss_pred eeEeeehhhcCC-CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHH-HHhCCcEEEEcCCchhhHHhHhhC
Confidence 999999998655 999999999999999999999999999999999999999999 999999999987666666665569
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCC-C-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-K-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI- 325 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~- 325 (359)
|+++++++ ..+++.+++.|+++|+++.+|... . ...++.+.++.+++++.|+..+++.++++++++..+++++|.+
T Consensus 231 d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~ 309 (339)
T COG1064 231 DAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEIL 309 (339)
T ss_pred cEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEE
Confidence 99999999 778999999999999999999984 4 3568899999999999999999999999999999999999999
Q ss_pred EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 326 ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 326 ~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
+.++++++++||+.|.+++..||+||.+.
T Consensus 310 e~~~l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 310 ETIPLDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred eeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence 69999999999999999999999999865
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=427.27 Aligned_cols=348 Identities=57% Similarity=0.989 Sum_probs=322.6
Q ss_pred ccceeeeeecCCCC--CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCC
Q 018246 10 PQKAIGWAARDNTG--TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
+.++..|..+...+ +++..++++|+++++||+|+++++|||++|++...|.++...+|.++|||.+|+|+++|++|++
T Consensus 7 p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~V~~ 86 (360)
T KOG0023|consen 7 PEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSNVTG 86 (360)
T ss_pred chhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCCccc
Confidence 44444555545555 6666999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
|++||||-|-....+|..|++|+.+..++|++....+.+...+|..++|+|++|+++++..+++||++++.+.||++.|+
T Consensus 87 ~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCa 166 (360)
T KOG0023|consen 87 FKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCA 166 (360)
T ss_pred ccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhc
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCC-CHHHHHHhcC
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSS-DPAKVKAAMG 246 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~-~~~~~~~~~~ 246 (359)
+.|+|..|...+. .||++|-|.|+|++|.+++|+|+++|.+|++++++..+.+++.+.+|++..++.. +++.++.+.+
T Consensus 167 GITvYspLk~~g~-~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~ 245 (360)
T KOG0023|consen 167 GITVYSPLKRSGL-GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMK 245 (360)
T ss_pred ceEEeehhHHcCC-CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHH
Confidence 9999999988888 7999999999988999999999999999999999997888888999999888877 7788888877
Q ss_pred CccEEEECCC--ChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCccc
Q 018246 247 TMDYIIDTVS--AVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAAD 324 (359)
Q Consensus 247 ~~d~vid~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~ 324 (359)
-.|..++++. ....++.++..|+++|++|++|.+.....++.++++.+.+.|.|+..+++.+.++++++..++.+++.
T Consensus 246 ~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~~ 325 (360)
T KOG0023|consen 246 TTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKSP 325 (360)
T ss_pred hhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcCc
Confidence 6777777766 66679999999999999999999998999999999999999999999999999999999999999999
Q ss_pred EEEEccccHHHHHHHHHcCCccEEEEEEcCCCcC
Q 018246 325 IELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358 (359)
Q Consensus 325 ~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~~ 358 (359)
++..+++++++||++|.+++.++|.||++..+..
T Consensus 326 IE~v~~~~v~~a~erm~kgdV~yRfVvD~s~~~~ 359 (360)
T KOG0023|consen 326 IELVKLSEVNEAYERMEKGDVRYRFVVDVSKSLL 359 (360)
T ss_pred eEEEehhHHHHHHHHHHhcCeeEEEEEEcccccC
Confidence 9999999999999999999999999999988754
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-59 Score=432.34 Aligned_cols=356 Identities=82% Similarity=1.362 Sum_probs=313.3
Q ss_pred CCCCCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEE
Q 018246 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTK 80 (359)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~ 80 (359)
||+||+..++||++++...+.++.++..+++.|.++++||+|||.++|||++|++.+.|.++...+|.++|||++|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~ 80 (360)
T PLN02586 1 MAKSPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTK 80 (360)
T ss_pred CCCChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEE
Confidence 99999999999999999988788899999999999999999999999999999999988665446688999999999999
Q ss_pred eCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccc
Q 018246 81 VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDA 160 (359)
Q Consensus 81 vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~ 160 (359)
+|++|++|++||||++.+....|+.|.+|+.|.++.|.++.+.+.....+|...+|+|+||+++|++.++++|+++++++
T Consensus 81 vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~ 160 (360)
T PLN02586 81 LGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDA 160 (360)
T ss_pred ECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHH
Confidence 99999999999999766666689999999999999999865432211112334579999999999999999999999999
Q ss_pred cccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 161 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
++++++.+.|+|+++.....+++|++|||.|+|++|++++|+|+.+|++|++++.++++...+.+++|+++++++++.+.
T Consensus 161 aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~ 240 (360)
T PLN02586 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEK 240 (360)
T ss_pred hhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHH
Confidence 99999999999999987776689999999999999999999999999999998888777666658899999998776555
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~ 320 (359)
+.+..+++|+|||++|...++..++++++++|+++.+|.......+++..++.++..+.|+..++..+++++++++++|+
T Consensus 241 ~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~ 320 (360)
T PLN02586 241 MKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHN 320 (360)
T ss_pred HHhhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHhCC
Confidence 56666689999999998766899999999999999999765566778888888899998988888889999999999999
Q ss_pred CcccEEEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 321 IAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 321 i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+++.+++|+|+++++||+.+.+++..||+|+.+..+
T Consensus 321 i~~~~~~~~l~~~~~A~~~~~~~~~~gkvvi~~~~~ 356 (360)
T PLN02586 321 ITADIELIRMDEINTAMERLAKSDVRYRFVIDVANS 356 (360)
T ss_pred CCCcEEEEeHHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 998778999999999999999998889999998554
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-59 Score=399.75 Aligned_cols=334 Identities=22% Similarity=0.349 Sum_probs=295.2
Q ss_pred cccceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCC---CCCCCcccccccEEEEEeCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGV---TNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~ 84 (359)
.+|++++|. .++++++.+.+.|++ .|+||+|++.++|||+||+|.+...... .+.|+++|||.+|+|+++|++
T Consensus 3 ~~~~A~vl~---g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~ 79 (354)
T KOG0024|consen 3 ADNLALVLR---GKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDE 79 (354)
T ss_pred cccceeEEE---ccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccc
Confidence 357787766 445588889999987 9999999999999999999999776542 346999999999999999999
Q ss_pred CCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccc
Q 018246 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 85 v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l 164 (359)
|+++++||||++.|.. +|..|++|++|.||.|+.+.+...+ ..+|++++|++.+++.|++|||+++++++|.+
T Consensus 80 Vk~LkVGDrVaiEpg~-~c~~cd~CK~GrYNlCp~m~f~atp------p~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ 152 (354)
T KOG0024|consen 80 VKHLKVGDRVAIEPGL-PCRDCDFCKEGRYNLCPHMVFCATP------PVDGTLAEYYVHPADFCYKLPDNVSFEEGALI 152 (354)
T ss_pred ccccccCCeEEecCCC-ccccchhhhCcccccCCccccccCC------CcCCceEEEEEechHheeeCCCCCchhhcccc
Confidence 9999999999999887 9999999999999999999877554 34699999999999999999999999998755
Q ss_pred cchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCH---HH
Q 018246 165 LCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP---AK 240 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~~ 240 (359)
. ++..+|+|.+.... ++|++|||+|+|++|+.+...||++|| +|++++-.++|++.+ ++||++.+.+.... +.
T Consensus 153 e-PLsV~~HAcr~~~v-k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~A-k~~Ga~~~~~~~~~~~~~~ 229 (354)
T KOG0024|consen 153 E-PLSVGVHACRRAGV-KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELA-KKFGATVTDPSSHKSSPQE 229 (354)
T ss_pred c-chhhhhhhhhhcCc-ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHH-HHhCCeEEeeccccccHHH
Confidence 5 47888999987776 999999999999999999999999999 999999999999999 78999998876653 23
Q ss_pred HHHhc----C--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHH
Q 018246 241 VKAAM----G--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLD 314 (359)
Q Consensus 241 ~~~~~----~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~ 314 (359)
+.+.. + .+|++|||+|...+++.++..++.+|.++++|......+|+..+...|++.+.|+..+...+|..+++
T Consensus 230 ~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~ 309 (354)
T KOG0024|consen 230 LAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIE 309 (354)
T ss_pred HHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHH
Confidence 33322 1 49999999999999999999999999999999988899999999999999999999999889999999
Q ss_pred HHHhCCCc--ccE-EEEccccHHHHHHHHHcCCc-cEEEEEEcCC
Q 018246 315 FCAKHNIA--ADI-ELVRMDQINTAMERLAKSDV-KYRFVIDVGN 355 (359)
Q Consensus 315 ~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~-~gkvvv~~~~ 355 (359)
++++|++. +.+ +.|+++++++||+.+.+++. .-|+++..++
T Consensus 310 li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~ 354 (354)
T KOG0024|consen 310 LVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE 354 (354)
T ss_pred HHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence 99999994 555 89999999999999998775 4688887653
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-55 Score=406.97 Aligned_cols=345 Identities=71% Similarity=1.241 Sum_probs=298.2
Q ss_pred ceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCC
Q 018246 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91 (359)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG 91 (359)
+++++...+.++.++..+++.|.|+++||+|||.++|+|++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 6 ~a~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vG 85 (375)
T PLN02178 6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEG 85 (375)
T ss_pred eeEEEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCC
Confidence 56677776777888888999999999999999999999999999998876444568899999999999999999999999
Q ss_pred CEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhh
Q 018246 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITV 171 (359)
Q Consensus 92 drV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta 171 (359)
|||++.+....|+.|.+|++|.++.|.++.+.+......|...+|+|+||+++|++.++++|+++++++++++.+...|+
T Consensus 86 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta 165 (375)
T PLN02178 86 DRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITV 165 (375)
T ss_pred CEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHH
Confidence 99976666557999999999999999987543222222233346999999999999999999999999999999999999
Q ss_pred hhHhHhcCC-CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKYYGM-TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
|+++..... .++|++|+|.|+|++|++++|+|+.+|++|+++++++++...+.+++|+++++++.+.+.+.+..+++|+
T Consensus 166 ~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 166 YSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred HHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcE
Confidence 999877654 3689999999999999999999999999999998876664444489999999987665555555568999
Q ss_pred EEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEEEcc
Q 018246 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELVRM 330 (359)
Q Consensus 251 vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~~~l 330 (359)
+||++|...++..++++++++|+++.+|......+++...++.+++++.|+..++..++.++++++++|++++.++.|||
T Consensus 246 vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~i~~~~l 325 (375)
T PLN02178 246 IIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSDIELIKM 325 (375)
T ss_pred EEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHhCCCcccEEEEeH
Confidence 99999988668999999999999999998665667788888899999999998888899999999999999988888999
Q ss_pred ccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 331 DQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 331 ~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+++++||+.+.+++..||+|+.+.++
T Consensus 326 ~~~~~A~~~~~~~~~~gkvvi~~~~~ 351 (375)
T PLN02178 326 SDINSAMDRLAKSDVRYRFVIDVANS 351 (375)
T ss_pred HHHHHHHHHHHcCCCceEEEEEeccc
Confidence 99999999999998889999998544
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=380.84 Aligned_cols=328 Identities=25% Similarity=0.426 Sum_probs=288.5
Q ss_pred CCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEecc
Q 018246 20 DNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVL 99 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~ 99 (359)
...++|+++++++++|++|||+||+.++|+||+|.+.+.|..+.. +|.++|||++|+|++||++|+++++||+| +..+
T Consensus 10 ~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkpGDhV-I~~f 87 (366)
T COG1062 10 EAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKPGDHV-ILLF 87 (366)
T ss_pred cCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCCCCEE-EEcc
Confidence 456669999999999999999999999999999999999998866 99999999999999999999999999999 6778
Q ss_pred ccCCCCCccccCCCCCCCcccccc-cccccCCCCCC-------------CCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 100 VASCQKCESCQQGLENYCPNMILT-YNSIDRDGTKT-------------YGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 100 ~~~~~~c~~~~~~~~~~~~~~~~~-~~~~~~~g~~~-------------~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
.+.|++|.+|+.|.+|+|....-. ..+...+|.++ -++|++|.++++.+++++++..+++.++.+.
T Consensus 88 ~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llG 167 (366)
T COG1062 88 TPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLG 167 (366)
T ss_pred cCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEe
Confidence 889999999999999999866222 22333333211 1599999999999999999999999999999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCH----HH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP----AK 240 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~----~~ 240 (359)
|...|.+.++.+.+.+++|++|.|.|.|++|++++|-|+..|+ ++++++.++++++.+ ++||+++++|.++. +.
T Consensus 168 CgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A-~~fGAT~~vn~~~~~~vv~~ 246 (366)
T COG1062 168 CGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELA-KKFGATHFVNPKEVDDVVEA 246 (366)
T ss_pred eeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHH-HhcCCceeecchhhhhHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999 99999999999765 34
Q ss_pred HHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC---HHHHHHHHH
Q 018246 241 VKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG---MKETQEMLD 314 (359)
Q Consensus 241 ~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~ 314 (359)
+.++++ ++|++|||+|+..+++.++.+..++|+.+.+|.... ..+.+.+++... .++.|+.++. +.++.++++
T Consensus 247 i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~ 325 (366)
T COG1062 247 IVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVD 325 (366)
T ss_pred HHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHH
Confidence 556666 999999999999999999999999999999998664 455666776655 8899988864 477999999
Q ss_pred HHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 315 FCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 315 ~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++.+|++.. .+ +.++|+|++|||+.|.+++.. |-||.
T Consensus 326 ~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~ 365 (366)
T COG1062 326 LYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR 365 (366)
T ss_pred HHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence 999999953 33 899999999999999999875 55543
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=391.00 Aligned_cols=345 Identities=50% Similarity=0.936 Sum_probs=299.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
+++++ ...+.+.+++++++.|+++++||+|||.++++|++|++.+.|.++....|.++|||++|+|+++|++++.|++
T Consensus 10 ~~~~~--~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~ 87 (357)
T PLN02514 10 TTGWA--ARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV 87 (357)
T ss_pred EEEEE--EecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence 44444 4455677999999999999999999999999999999999887654456889999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|++.+....|++|.+|+.|.++.|.+..+.+......|...+|+|+||+++|...++++|+++++++++++++++.|
T Consensus 88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t 167 (357)
T PLN02514 88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVT 167 (357)
T ss_pred CCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHH
Confidence 99998766666799999999999999988644322212224445799999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
||+++......++|++|+|+|+|++|++++|+|++.|++|+++++++++.+.+.+++|+++++++.+.+.+.+...++|+
T Consensus 168 a~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~ 247 (357)
T PLN02514 168 VYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDY 247 (357)
T ss_pred HHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcE
Confidence 99999887776899999999999999999999999999999999888888777678999888876655555555568999
Q ss_pred EEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEEEcc
Q 018246 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELVRM 330 (359)
Q Consensus 251 vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~~~l 330 (359)
+||++|...++..++++++++|+++.+|......+++...++.+++++.|+......++++++++++++++++.+++|||
T Consensus 248 vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~i~~~~l 327 (357)
T PLN02514 248 IIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGLTSMIEVVKM 327 (357)
T ss_pred EEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhCCCcCcEEEEcH
Confidence 99999977668999999999999999998765567778888889999999999888899999999999999887888999
Q ss_pred ccHHHHHHHHHcCCccEEEEEEcCCCc
Q 018246 331 DQINTAMERLAKSDVKYRFVIDVGNSK 357 (359)
Q Consensus 331 ~~~~~a~~~~~~~~~~gkvvv~~~~~~ 357 (359)
+++.+||+.+.++...||+|+.++.+-
T Consensus 328 ~~~~~A~~~~~~~~~~gk~v~~~~~~~ 354 (357)
T PLN02514 328 DYVNTAFERLEKNDVRYRFVVDVAGSN 354 (357)
T ss_pred HHHHHHHHHHHcCCCceeEEEEccccc
Confidence 999999999999988899999987753
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=383.51 Aligned_cols=338 Identities=25% Similarity=0.433 Sum_probs=287.4
Q ss_pred cceeeeeecCC------CCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCC
Q 018246 11 QKAIGWAARDN------TGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 11 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (359)
||++.+..++. ++.+++.+++.|+|+++||+|||.+++||++|++.+.|.++ ..+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence 67888887654 47799999999999999999999999999999999988754 356889999999999999999
Q ss_pred CCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccc-cccC--------C-----CCCCCCccceEEEeeCCceE
Q 018246 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SIDR--------D-----GTKTYGGYSDLIVVDQHYVL 150 (359)
Q Consensus 85 v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~~--------~-----g~~~~g~~a~~~~~~~~~~~ 150 (359)
++++++||||++.+.. .|+.|.+|+.|.++.|.++..... +... + +...+|+|+||+++|++.++
T Consensus 80 v~~~~~GdrV~~~~~~-~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVP-SCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCC-CCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceE
Confidence 9999999999765543 899999999999999988643210 1000 0 01123799999999999999
Q ss_pred ECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC
Q 018246 151 RFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA 229 (359)
Q Consensus 151 ~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~ 229 (359)
++|+++++++++.+.++..|||+++.....+++|++|||.|+|++|++++|+|+..|+ +|++++++++|++.+ +++|+
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~Ga 237 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA-RELGA 237 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHcCC
Confidence 9999999999999999999999998777777999999999999999999999999999 799999999999888 89999
Q ss_pred cEEecCCCHHH---HHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeec
Q 018246 230 DAFLVSSDPAK---VKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNV 303 (359)
Q Consensus 230 ~~v~~~~~~~~---~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~ 303 (359)
++++++.+.+. +.+++. ++|++|||+|...++..++++++++|+++.+|.... ..+++...++.|++++.|+..
T Consensus 238 ~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~ 317 (371)
T cd08281 238 TATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYM 317 (371)
T ss_pred ceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEec
Confidence 99998876543 333443 799999999987778999999999999999997643 456788888899999999877
Q ss_pred CC---HHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 304 GG---MKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 304 ~~---~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
.. ..+++++++++++|++++ .+ ++|+|+++++||+.+.+++..+|+|+
T Consensus 318 ~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~ 371 (371)
T cd08281 318 GSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL 371 (371)
T ss_pred CCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 54 467999999999999964 33 89999999999999999988777664
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=376.85 Aligned_cols=315 Identities=26% Similarity=0.448 Sum_probs=279.0
Q ss_pred CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccC
Q 018246 23 GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVAS 102 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~ 102 (359)
..+++++++.|.|+++||+|||.++++|++|++.+.|.++...+|.++|||++|+|+++|++++.|++||||++.+....
T Consensus 13 ~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 92 (329)
T TIGR02822 13 GPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRT 92 (329)
T ss_pred CCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCc
Confidence 46889999999999999999999999999999999887654445789999999999999999999999999988776668
Q ss_pred CCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCC
Q 018246 103 CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 182 (359)
Q Consensus 103 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~ 182 (359)
|+.|.+|..|.++.|+.+.+. |...+|+|+||+.+|++.++++|+++++++++++++.+.|||+++.. ..++
T Consensus 93 c~~c~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~-~~~~ 164 (329)
T TIGR02822 93 CGVCRYCRRGAENLCPASRYT-------GWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLP 164 (329)
T ss_pred CCCChHHhCcCcccCCCcccC-------CcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHh-cCCC
Confidence 999999999999999986542 33456999999999999999999999999999999999999999975 4569
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|+++++++.+.. .+++|+++++.+...++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a-~~~Ga~~vi~~~~~~-----~~~~d~~i~~~~~~~~~~ 238 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLA-LALGAASAGGAYDTP-----PEPLDAAILFAPAGGLVP 238 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-HHhCCceeccccccC-----cccceEEEECCCcHHHHH
Confidence 99999999999999999999999999999999999998887 899999998754321 236899999888777799
Q ss_pred HHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEEEccccHHHHHHHHH
Q 018246 263 PLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLA 341 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~~~l~~~~~a~~~~~ 341 (359)
.++++++++|+++.+|...+ ...++...++.+++++.++......++.+++++++++++++.+++|+|+++++||+.+.
T Consensus 239 ~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~i~~~~~l~~~~~A~~~~~ 318 (329)
T TIGR02822 239 PALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVRVTTHTYPLSEADRALRDLK 318 (329)
T ss_pred HHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCeeEEEEEeHHHHHHHHHHHH
Confidence 99999999999999997533 34567777788999999988877888999999999999987668999999999999999
Q ss_pred cCCccEEEEE
Q 018246 342 KSDVKYRFVI 351 (359)
Q Consensus 342 ~~~~~gkvvv 351 (359)
+++..||+|+
T Consensus 319 ~~~~~Gkvvl 328 (329)
T TIGR02822 319 AGRFDGAAVL 328 (329)
T ss_pred cCCCceEEEe
Confidence 9998999987
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=378.23 Aligned_cols=332 Identities=22% Similarity=0.303 Sum_probs=275.8
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhc-cCCC--CCCCCCcccccccEEEEEeCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCAR-NEWG--VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
..+++.++. .++.+++++.+.| ++++||||||.++|||++|++.+. |..+ ...+|.++|||++|+|+++ ++
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v 76 (343)
T PRK09880 3 VKTQSCVVA---GKKDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DS 76 (343)
T ss_pred ccceEEEEe---cCCceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cC
Confidence 345555544 5566899998887 689999999999999999999875 4332 2456899999999999999 78
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
++|++||||++.+.. +|+.|.+|+.|.++.|.+..+.... ......+|+|+||+++|++.++++|+++++++++ +.
T Consensus 77 ~~~~vGdrV~~~~~~-~cg~c~~c~~g~~~~c~~~~~~g~~--~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~ 152 (343)
T PRK09880 77 SGLKEGQTVAINPSK-PCGHCKYCLSHNENQCTTMRFFGSA--MYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FA 152 (343)
T ss_pred ccCCCCCEEEECCCC-CCcCChhhcCCChhhCCCcceeecc--cccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hh
Confidence 899999999887654 8999999999999999986542110 0001246999999999999999999999987654 45
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHH--
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVK-- 242 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-- 242 (359)
.++.+||+++.+... .+|++|||.|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|+++++++++.+...
T Consensus 153 ~~~~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~ 230 (343)
T PRK09880 153 EPLAVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REMGADKLVNPQNDDLDHYK 230 (343)
T ss_pred cHHHHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHcCCcEEecCCcccHHHHh
Confidence 567899999988766 689999999999999999999999999 799999999999888 889999999877643211
Q ss_pred HhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc
Q 018246 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
...+++|++||++|++.++..++++++++|+++.+|......+++...++.|++++.|+... ..+++++++++++++++
T Consensus 231 ~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~l~~~g~i~ 309 (343)
T PRK09880 231 AEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRF-TEEFNTAVSWLANGVIN 309 (343)
T ss_pred ccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeec-cccHHHHHHHHHcCCCC
Confidence 11236999999999876689999999999999999986655678888888999999998764 46799999999999997
Q ss_pred c--cE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 323 A--DI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 323 ~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+ .+ ++|+|+++++||+.+.++...||+++.+
T Consensus 310 ~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 310 PLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred chhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 5 34 8999999999999999887789999864
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=347.21 Aligned_cols=329 Identities=26% Similarity=0.414 Sum_probs=289.4
Q ss_pred CCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEecc
Q 018246 20 DNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVL 99 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~ 99 (359)
+...+|.+++++.++|+.+||+||+.++++|++|.+.+.|..+...+|.++|||++|+|+++|..|+.+++||+| +..+
T Consensus 15 ~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~~vk~GD~V-iplf 93 (375)
T KOG0022|consen 15 EAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVTTVKPGDHV-IPLF 93 (375)
T ss_pred cCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCccccCCCCEE-eecc
Confidence 455669999999999999999999999999999999999987778889999999999999999999999999999 6778
Q ss_pred ccCCCCCccccCCCCCCCccccccc--ccccCCCCCCC-------------CccceEEEeeCCceEECCCCCCccccccc
Q 018246 100 VASCQKCESCQQGLENYCPNMILTY--NSIDRDGTKTY-------------GGYSDLIVVDQHYVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 100 ~~~~~~c~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~-------------g~~a~~~~~~~~~~~~lp~~l~~~~aa~l 164 (359)
.+.|+.|.+|+++..|+|..+.... ....+||.++. -+|+||.++++..+++|++..+++.++.|
T Consensus 94 ~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLL 173 (375)
T KOG0022|consen 94 TPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLL 173 (375)
T ss_pred ccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEe
Confidence 8899999999999999998885543 22233444432 38999999999999999999999999999
Q ss_pred cchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCH-----
Q 018246 165 LCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP----- 238 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~----- 238 (359)
.|...|+|.|.-+.+.++||+++.|.|-|.+|+++++-||..|| |++.++-++++.+.+ ++||+++.+|..+.
T Consensus 174 gCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~a-k~fGaTe~iNp~d~~~~i~ 252 (375)
T KOG0022|consen 174 GCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKA-KEFGATEFINPKDLKKPIQ 252 (375)
T ss_pred eccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHH-HhcCcceecChhhccccHH
Confidence 99999999999999999999999999999999999999999999 999999999999999 99999999998853
Q ss_pred HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC---HHHHHH
Q 018246 239 AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG---MKETQE 311 (359)
Q Consensus 239 ~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~ 311 (359)
+.+.++++ |+|+.|||+|+..++..++.+...+ |+-+.+|.... .+++..++++ ++.++.|+.++. +.++..
T Consensus 253 evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~-~GR~~~Gs~FGG~K~~~~iP~ 331 (375)
T KOG0022|consen 253 EVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV-TGRTWKGSAFGGFKSKSDIPK 331 (375)
T ss_pred HHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc-cccEEEEEecccccchhhhhH
Confidence 45666775 9999999999999999999999888 99999998664 4556666654 577888877765 477888
Q ss_pred HHHHHHhCCCcc--c-EEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 312 MLDFCAKHNIAA--D-IELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 312 ~~~~l~~g~i~~--~-~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++...+++++. . +|.+||+++++||+.|.+++.. |.|+.
T Consensus 332 lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~ 374 (375)
T KOG0022|consen 332 LVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW 374 (375)
T ss_pred HHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence 899999998853 3 3999999999999999999875 77765
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=373.71 Aligned_cols=329 Identities=25% Similarity=0.403 Sum_probs=281.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++++. .++.+++.+++.|.++++||+||+.++++|++|++.+.|.+.. ...|.++|||++|+|+++|++++.++
T Consensus 1 mka~~~~---~~~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (339)
T cd08239 1 MRGAVFP---GDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFR 77 (339)
T ss_pred CeEEEEe---cCCceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCC
Confidence 5677655 4567999999999999999999999999999999988775432 23578999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+.. .|+.|.+|+.|.++.|.+..+. .|...+|+|++|+++|+++++++|+++++++++.+++++.
T Consensus 78 ~Gd~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~------~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ 150 (339)
T cd08239 78 VGDRVMVYHYV-GCGACRNCRRGWMQLCTSKRAA------YGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIG 150 (339)
T ss_pred CCCEEEECCCC-CCCCChhhhCcCcccCcCcccc------cccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHH
Confidence 99999776554 8999999999999999876431 1334579999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHH--HHHHhcC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPA--KVKAAMG 246 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~ 246 (359)
|||+++.... +++|++|||+|+|++|++++|+|+++|++ |+++++++++.+.+ +++|+++++++++.+ .+.+++.
T Consensus 151 ta~~~l~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~ga~~~i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 151 TAYHALRRVG-VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA-KALGADFVINSGQDDVQEIRELTS 228 (339)
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEEcCCcchHHHHHHHhC
Confidence 9999997665 48899999999999999999999999997 99999999998888 899999999886643 2333333
Q ss_pred --CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeC-HHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc
Q 018246 247 --TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVP-IFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA 323 (359)
Q Consensus 247 --~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~ 323 (359)
++|++||++|+...+..++++++++|+++.+|.... .+++ ...++.+++++.|+...+.++++++++++.++++++
T Consensus 229 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~ 307 (339)
T cd08239 229 GAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEV 307 (339)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCCh
Confidence 799999999998767889999999999999987553 2333 345778999999999888889999999999999864
Q ss_pred --cE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 324 --DI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 324 --~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.+ ++|+|+++++||+.+.++. .||+|+.+
T Consensus 308 ~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~ 339 (339)
T cd08239 308 DRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF 339 (339)
T ss_pred hHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence 34 8899999999999988875 69999874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=368.00 Aligned_cols=309 Identities=26% Similarity=0.418 Sum_probs=267.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccC-CCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE-WGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++.+..++.+..+++.+++.|.|++|||||||+++++|+.|++.+.|. .+..++|+++|.|++|+|+++|++|+.|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 67777777777777999999999999999999999999999999999997 33456899999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||+.... . ..+|+|+||+++|++.++++|+++++++||+++++++
T Consensus 81 ~GdrV~~~~~--~------------------------------~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~ 128 (326)
T COG0604 81 VGDRVAALGG--V------------------------------GRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGL 128 (326)
T ss_pred CCCEEEEccC--C------------------------------CCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHH
Confidence 9999975420 0 0459999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
|||++++....+++|++|||+|+ |++|.+++|+|+++|++++++.+++++.+.+ +++|+++++++++.+. +.+++
T Consensus 129 TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~-~~lGAd~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 129 TAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELL-KELGADHVINYREEDFVEQVRELT 207 (326)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHH-HhcCCCEEEcCCcccHHHHHHHHc
Confidence 99999999888899999999985 9999999999999999888888888887755 9999999999887644 44555
Q ss_pred C--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCCH------HHHHHHHHH
Q 018246 246 G--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGGM------KETQEMLDF 315 (359)
Q Consensus 246 ~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~~------~~~~~~~~~ 315 (359)
+ ++|+|+|++|+.. +..++++|+++|+++.+|..++ ...++...++.+.+++.|...... +.++++.++
T Consensus 208 ~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 286 (326)
T COG0604 208 GGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDL 286 (326)
T ss_pred CCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHH
Confidence 4 6999999999988 8889999999999999998763 556777888888999988777655 447789999
Q ss_pred HHhCCCcccE-EEEccccHHHHHHHHHc-CCccEEEEEEc
Q 018246 316 CAKHNIAADI-ELVRMDQINTAMERLAK-SDVKYRFVIDV 353 (359)
Q Consensus 316 l~~g~i~~~~-~~~~l~~~~~a~~~~~~-~~~~gkvvv~~ 353 (359)
+.+|++++.+ .+|||++..++...... ++..||+|+++
T Consensus 287 ~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 287 LASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred HHcCCCcceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence 9999999999 69999996555554444 47789999974
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=370.47 Aligned_cols=337 Identities=23% Similarity=0.405 Sum_probs=283.2
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+||++++..++ +.+++++++.|.|+++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++|+
T Consensus 1 ~mka~~~~~~~--~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (358)
T TIGR03451 1 TVRGVIARSKG--APVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVA 77 (358)
T ss_pred CcEEEEEccCC--CCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccC
Confidence 58888877543 3488899999999999999999999999999999988654 34688999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccccccc-CCCC-----CCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID-RDGT-----KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~g~-----~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
+||||++.+.. .|+.|.+|..|.+++|........... .+|. ...|+|+||+.+|+..++++|+++++++++.
T Consensus 78 ~GdrV~~~~~~-~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~ 156 (358)
T TIGR03451 78 PGDYVVLNWRA-VCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGL 156 (358)
T ss_pred CCCEEEEccCC-CCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhh
Confidence 99999877654 899999999999999986422111000 0111 1359999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA--- 239 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--- 239 (359)
+++.+.|||+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|+++++++++.+
T Consensus 157 l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~ 235 (358)
T TIGR03451 157 LGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-REFGATHTVNSSGTDPVE 235 (358)
T ss_pred hcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceEEcCCCcCHHH
Confidence 999999999888777777999999999999999999999999999 599999999999888 899999999876543
Q ss_pred HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecC---CHHHHHHH
Q 018246 240 KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVG---GMKETQEM 312 (359)
Q Consensus 240 ~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~ 312 (359)
.+.+.++ ++|++||++|+..++..++++++++|+++.+|.... ..+++...++.+++++.++... ...+++++
T Consensus 236 ~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 315 (358)
T TIGR03451 236 AIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPML 315 (358)
T ss_pred HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHH
Confidence 3444443 799999999987678999999999999999998654 3567777888899999987643 35779999
Q ss_pred HHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 313 LDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 313 ~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++++++|++++ .+ ++|||+++++||+.+.+++.. |+++.
T Consensus 316 ~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~ 357 (358)
T TIGR03451 316 VDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE 357 (358)
T ss_pred HHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence 99999999975 33 899999999999999888764 77765
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=371.93 Aligned_cols=341 Identities=23% Similarity=0.362 Sum_probs=282.1
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
.+.+|+++.+.. ..+.+++.+++.|.|+++||+|||.++|+|++|++.+.|..+ ...+|.++|||++|+|+++|+++
T Consensus 7 ~~~~mka~~~~~--~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v 84 (381)
T PLN02740 7 KVITCKAAVAWG--PGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGV 84 (381)
T ss_pred cceeeEEEEEec--CCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCC
Confidence 446788877654 334578889999999999999999999999999999988753 23568899999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccc-ccccc-CCC---------------CCCCCccceEEEeeCCc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT-YNSID-RDG---------------TKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~~~-~~g---------------~~~~g~~a~~~~~~~~~ 148 (359)
++|++||||++.+.. .|+.|.+|..|.++.|.++... +.... .+| ...+|+|+||+++|.+.
T Consensus 85 ~~~~vGdrV~~~~~~-~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~ 163 (381)
T PLN02740 85 EDLKAGDHVIPIFNG-ECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSAC 163 (381)
T ss_pred CcCCCCCEEEecCCC-CCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHH
Confidence 999999999877654 8999999999999999986532 10000 000 11359999999999999
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL 227 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~ 227 (359)
++++|+++++++++.+++++.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++
T Consensus 164 ~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a-~~~ 242 (381)
T PLN02740 164 VVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKG-KEM 242 (381)
T ss_pred eEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH-HHc
Confidence 999999999999999999999999988777777999999999999999999999999999 699999999999988 899
Q ss_pred CCcEEecCCCH-----HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCCC--eeeCHHHHHhcCcEE
Q 018246 228 GADAFLVSSDP-----AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEKP--LEVPIFALVGARRLV 298 (359)
Q Consensus 228 g~~~v~~~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~k~~~i 298 (359)
|++++++.++. +.+.++++ ++|++||++|+..++..++.+++++ |+++.+|..... .+++...+ .+++++
T Consensus 243 Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i 321 (381)
T PLN02740 243 GITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSI 321 (381)
T ss_pred CCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeE
Confidence 99999987642 23444444 7999999999877789999999996 999999976543 33444433 378899
Q ss_pred EEeecCC---HHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 299 GGSNVGG---MKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 299 ~g~~~~~---~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.|+..++ ..++.++++++.++++++ .+ ++|+|+|+++||+.+.+++. .|++|++
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~~ 381 (381)
T PLN02740 322 TGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLHL 381 (381)
T ss_pred EEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence 9887654 357899999999999864 34 89999999999999988765 6999864
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=368.89 Aligned_cols=337 Identities=23% Similarity=0.334 Sum_probs=279.0
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
.|+++++. +..+.+++.+++.|.|+++||+|||.++|+|++|++.+.|.. .+|.++|||++|+|+++|+++++|+
T Consensus 12 ~mka~~~~--~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~ 86 (378)
T PLN02827 12 TCRAAVAW--GAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFE 86 (378)
T ss_pred eeEEEEEe--cCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccC
Confidence 46666554 455568899999999999999999999999999999887642 3578999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccccccc---------CCC-----CCCCCccceEEEeeCCceEECCCC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID---------RDG-----TKTYGGYSDLIVVDQHYVLRFPDN 155 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~---------~~g-----~~~~g~~a~~~~~~~~~~~~lp~~ 155 (359)
+||||++.+.. .|++|.+|+.|.++.|.++.....+.. ..| ...+|+|+||+++|++.++++|++
T Consensus 87 ~GdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~ 165 (378)
T PLN02827 87 KGDHVLTVFTG-ECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL 165 (378)
T ss_pred CCCEEEEecCC-CCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCC
Confidence 99999877544 899999999999999987532111000 001 113489999999999999999999
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+++++++.+.+++.++|+++.....+++|++|||+|+|++|++++|+|+++|+ +|+++++++++.+.+ +++|++++++
T Consensus 166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~lGa~~~i~ 244 (378)
T PLN02827 166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTFGVTDFIN 244 (378)
T ss_pred CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcCCcEEEc
Confidence 99999999999888999887666677999999999999999999999999999 588888899998888 8999999998
Q ss_pred CCCH-----HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCCCeeeCH-HHHHhcCcEEEEeecCC-
Q 018246 235 SSDP-----AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEKPLEVPI-FALVGARRLVGGSNVGG- 305 (359)
Q Consensus 235 ~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~k~~~i~g~~~~~- 305 (359)
+++. ..+.+++. ++|++||++|....+..+++.++++ |+++.+|.......++. ..++.+++++.|+....
T Consensus 245 ~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 324 (378)
T PLN02827 245 PNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGW 324 (378)
T ss_pred ccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCC
Confidence 7642 22344443 7999999999876689999999998 99999998654444433 35678999999987653
Q ss_pred --HHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 306 --MKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 306 --~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
..++++++++++++++++ .+ ++|+|+++++||+.+.+++. +|+||.+.
T Consensus 325 ~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~~ 377 (378)
T PLN02827 325 KPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHMP 377 (378)
T ss_pred chhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEec
Confidence 357899999999999987 45 89999999999999998876 79999764
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=364.18 Aligned_cols=324 Identities=27% Similarity=0.385 Sum_probs=267.1
Q ss_pred ccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCC-cccccccEEEEEeCCCCCCCCCCCEEEEeccccCC
Q 018246 25 FSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPI-VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASC 103 (359)
Q Consensus 25 ~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~ 103 (359)
.++++.+.|.+.|+||+|||.++|||+||++.++|..+....+. ++|||++|+|+++| .++.+++||||++.+.. .|
T Consensus 13 ~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~-~C 90 (350)
T COG1063 13 VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNI-PC 90 (350)
T ss_pred cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCCCEEEECCCc-CC
Confidence 34666666678999999999999999999999999876555555 89999999999999 77889999999887665 99
Q ss_pred CCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc-eEECCCCCCccccccccchhhhhhhHhHhcCCCC
Q 018246 104 QKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY-VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 182 (359)
Q Consensus 104 ~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~-~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~ 182 (359)
+.|.+|+.|.++.|.+..+. +....+...+|+|+||+++|.++ +.++|+++ ..+++++..++.+++++.......+
T Consensus 91 g~C~~C~~G~~~~C~~~~~~--g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~~ 167 (350)
T COG1063 91 GHCRYCRAGEYNLCENPGFY--GYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAVR 167 (350)
T ss_pred CCChhHhCcCcccCCCcccc--ccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCCC
Confidence 99999999999999955422 11111122679999999999755 44558988 6777888888999988754444436
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEECCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMG--TMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g 256 (359)
++++|+|+|+|++|++++++++.+|+ +|++++++++|++.+.+.+|++.+++.... ..+.++++ ++|++|||+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 66699999999999999999999998 899999999999999433777777766542 23445554 6999999999
Q ss_pred ChhhHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhcCcEEEEeec-CCHHHHHHHHHHHHhCCCccc---EEEEccc
Q 018246 257 AVHSLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGARRLVGGSNV-GGMKETQEMLDFCAKHNIAAD---IELVRMD 331 (359)
Q Consensus 257 ~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k~~~i~g~~~-~~~~~~~~~~~~l~~g~i~~~---~~~~~l~ 331 (359)
...++..+++.++++|+++.+|...... .++...++.|++++.|+.. ....+|+.+++++++|++.+. .++++++
T Consensus 248 ~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~ 327 (350)
T COG1063 248 SPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLD 327 (350)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccHH
Confidence 9888999999999999999999987655 6888899999999999965 666789999999999999764 4889999
Q ss_pred cHHHHHHHHHcCCc-cEEEEEEc
Q 018246 332 QINTAMERLAKSDV-KYRFVIDV 353 (359)
Q Consensus 332 ~~~~a~~~~~~~~~-~gkvvv~~ 353 (359)
++++||+.+.+.+. ..|+++.+
T Consensus 328 ~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 328 DAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred HHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999998654 56888763
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-49 Score=366.58 Aligned_cols=337 Identities=24% Similarity=0.353 Sum_probs=275.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|++..+.. .++.+++++++.|+|+++||+|||.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus 2 ~~a~~~~~--~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~ 79 (368)
T TIGR02818 2 SRAAVAWA--AGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKV 79 (368)
T ss_pred ceEEEEec--CCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCC
Confidence 56665553 4556889999999999999999999999999999999887655567899999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccc-cc--------cCCC-----CCCCCccceEEEeeCCceEECCCCC
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SI--------DRDG-----TKTYGGYSDLIVVDQHYVLRFPDNM 156 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~--------~~~g-----~~~~g~~a~~~~~~~~~~~~lp~~l 156 (359)
||||++.+. ..|++|.+|+.|.++.|.++..... +. ..+| ...+|+|+||+++|++.++++|+++
T Consensus 80 GdrV~~~~~-~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l 158 (368)
T TIGR02818 80 GDHVIPLYT-AECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAA 158 (368)
T ss_pred CCEEEEcCC-CCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCC
Confidence 999977654 4899999999999999987532100 00 0011 0124799999999999999999999
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++++++++++.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|+++++++
T Consensus 159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~Ga~~~i~~ 237 (368)
T TIGR02818 159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKLGATDCVNP 237 (368)
T ss_pred CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCeEEcc
Confidence 9999999999999999998777777999999999999999999999999999 899999999999888 89999999987
Q ss_pred CC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecC--
Q 018246 236 SD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVG-- 304 (359)
Q Consensus 236 ~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~-- 304 (359)
++ . +.+.+++. ++|++||++|+..++..++++++++ |+++.+|.... ...+....++. +..+.++...
T Consensus 238 ~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 316 (368)
T TIGR02818 238 NDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGV 316 (368)
T ss_pred cccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCC
Confidence 63 2 23444443 8999999999877789999999886 99999997542 34444444443 4456776543
Q ss_pred -CHHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 305 -GMKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 305 -~~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
...++.+++++++++++++ .+ ++|+|+++++||+.+.+++. +|++|.+
T Consensus 317 ~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~ 368 (368)
T TIGR02818 317 KGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY 368 (368)
T ss_pred CcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence 3467999999999999864 34 89999999999999987764 7999864
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=362.00 Aligned_cols=336 Identities=26% Similarity=0.399 Sum_probs=279.4
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
++|++++. +.++.+++++++.|.++++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++++
T Consensus 2 ~~ka~~~~--~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08277 2 KCKAAVAW--EAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLK 78 (365)
T ss_pred ccEEEEEc--cCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCC
Confidence 45665554 3445689999999999999999999999999999999988755 45688999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCC-------------CCCCCccceEEEeeCCceEECCCCC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDG-------------TKTYGGYSDLIVVDQHYVLRFPDNM 156 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g-------------~~~~g~~a~~~~~~~~~~~~lp~~l 156 (359)
+||||++.+. ..|++|.+|..|.+++|.++.+...+...++ ....|+|+||+++++++++++|+++
T Consensus 79 ~GdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 79 PGDKVIPLFI-GQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCCEEEECCC-CCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCC
Confidence 9999976544 4999999999999999998765433222211 1135899999999999999999999
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++++++.+++.|||+++.....+++|++|||+|+|++|++++++|+.+|+ +|+++++++++.+.+ +++|++++++.
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~ga~~~i~~ 236 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEFGATDFINP 236 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCCcEecc
Confidence 9999999999999999998777777999999999999999999999999999 799999999999888 88999999887
Q ss_pred CCH-----HHHHHhc-CCccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC--
Q 018246 236 SDP-----AKVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG-- 305 (359)
Q Consensus 236 ~~~-----~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~-- 305 (359)
.+. +.+.+++ +++|++||++|+...+..++++++++ |+++.+|...+ ..+++...++. ++++.|+..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~ 315 (365)
T cd08277 237 KDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFK 315 (365)
T ss_pred ccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCC
Confidence 542 2344444 38999999999877689999999885 99999997653 34566666654 78998887654
Q ss_pred -HHHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 306 -MKETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 306 -~~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
..+++++++++++++++ +.+ ++|+|+++++||+.+.+++ ..|+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i~ 365 (365)
T cd08277 316 SRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVIT 365 (365)
T ss_pred hHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEeeC
Confidence 35789999999999875 334 8999999999999998877 4688863
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=362.64 Aligned_cols=336 Identities=22% Similarity=0.356 Sum_probs=279.6
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+|+++.+.. .++.+++++++.|+|+++||+|||.++++|++|++.+.|..+...+|.++|||++|+|+++|+++++|+
T Consensus 2 ~~ka~~~~~--~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 79 (369)
T cd08301 2 TCKAAVAWE--AGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLK 79 (369)
T ss_pred ccEEEEEec--CCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCccc
Confidence 577777664 445689999999999999999999999999999999988766566789999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccc--ccccCC--------C-----CCCCCccceEEEeeCCceEECCC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY--NSIDRD--------G-----TKTYGGYSDLIVVDQHYVLRFPD 154 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~--~~~~~~--------g-----~~~~g~~a~~~~~~~~~~~~lp~ 154 (359)
+||||++.+. ..|++|.+|..|.++.|.++.... +....+ | ....|+|+||+++|+..++++|+
T Consensus 80 ~GdrV~~~~~-~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~ 158 (369)
T cd08301 80 PGDHVLPVFT-GECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINP 158 (369)
T ss_pred cCCEEEEccC-CCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCC
Confidence 9999976654 489999999999999999864321 000000 0 11348999999999999999999
Q ss_pred CCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEe
Q 018246 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFL 233 (359)
Q Consensus 155 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~ 233 (359)
++++++++.+++...|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.+.+ +++|++.++
T Consensus 159 ~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~Ga~~~i 237 (369)
T cd08301 159 EAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKFGVTEFV 237 (369)
T ss_pred CCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceEE
Confidence 999999999999999999988777777999999999999999999999999999 899999999999888 899999988
Q ss_pred cCCC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecC
Q 018246 234 VSSD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVG 304 (359)
Q Consensus 234 ~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~ 304 (359)
++.+ . +.+.++.+ ++|++||++|+...+..++++++++ |+++.+|.... ..+++...++ +++++.|+...
T Consensus 238 ~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~ 316 (369)
T cd08301 238 NPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFG 316 (369)
T ss_pred cccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHh-cCCeEEEEecC
Confidence 8764 1 22334443 7999999999877688999999996 99999998653 3445544444 68999998664
Q ss_pred C---HHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 305 G---MKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 305 ~---~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
. ..+++++++++.+++++. .+ ++|||+++++||+.+.+++. .|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~~ 368 (369)
T cd08301 317 GYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGEC-LRCIL 368 (369)
T ss_pred CCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCc-eeEEe
Confidence 3 357899999999998864 33 89999999999999998876 58886
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=360.63 Aligned_cols=318 Identities=26% Similarity=0.360 Sum_probs=275.0
Q ss_pred CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccC-CCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccC
Q 018246 24 TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE-WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVAS 102 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~ 102 (359)
.+++++++.|.++++||+|||.++++|++|++.+.+. .+...+|.++|||++|+|+++|++++.+ +||||++.+.. .
T Consensus 10 ~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~-~ 87 (349)
T TIGR03201 10 PMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVI-P 87 (349)
T ss_pred CceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCC-C
Confidence 3888999999999999999999999999999887443 2234568899999999999999999887 99999877655 9
Q ss_pred CCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCC------CCCccccccccchhhhhhhHhH
Q 018246 103 CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD------NMPLDAGAPLLCAGITVYSPMK 176 (359)
Q Consensus 103 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~------~l~~~~aa~l~~~~~ta~~~l~ 176 (359)
|+.|.+|+.|.++.|.+..+. |...+|+|+||+++|++.++++|+ ++++++++++++++.|+|+++.
T Consensus 88 cg~c~~c~~g~~~~c~~~~~~-------g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~ 160 (349)
T TIGR03201 88 CGECELCKTGRGTICRAQKMP-------GNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV 160 (349)
T ss_pred CCCChhhhCcCcccCCCCCcc-------CcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH
Confidence 999999999999999875432 233469999999999999999999 8999999999999999999987
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH---H---HHHHhcC--Cc
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---A---KVKAAMG--TM 248 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~---~~~~~~~--~~ 248 (359)
.. .+++|++|+|+|+|++|++++|+|++.|++|+++++++++++.+ +++|+++++++.+. + .+.++++ ++
T Consensus 161 ~~-~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~ 238 (349)
T TIGR03201 161 QA-GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM-KGFGADLTLNPKDKSAREVKKLIKAFAKARGL 238 (349)
T ss_pred hc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceEecCccccHHHHHHHHHhhcccCCC
Confidence 64 45899999999999999999999999999999999999999888 88999999887552 2 2333443 66
Q ss_pred c----EEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc-
Q 018246 249 D----YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA- 323 (359)
Q Consensus 249 d----~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~- 323 (359)
| ++|||+|+..++..++++++++|+++.+|.......+++..++.+++++.|+...+..++++++++++++++++
T Consensus 239 d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~ 318 (349)
T TIGR03201 239 RSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLG 318 (349)
T ss_pred CCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcc
Confidence 5 89999999877888999999999999999876556777788888889999988777888999999999999964
Q ss_pred -cEEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 324 -DIELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 324 -~~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.++.|||+++++||+.+.+++..||++++
T Consensus 319 ~~i~~~~l~~~~~A~~~~~~~~~~~k~~~~ 348 (349)
T TIGR03201 319 PFVERRPLDQIEHVFAAAHHHKLKRRAILT 348 (349)
T ss_pred cceEEecHHHHHHHHHHHHcCCccceEEec
Confidence 45789999999999999999888999885
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=360.90 Aligned_cols=329 Identities=24% Similarity=0.317 Sum_probs=261.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC---CCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV---TNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
|+++++.. +.+. +++.+++.|+|+++||||||+++++|++|++.+.|.++. ..+|.++|||++|+|+++|++ +.
T Consensus 1 mka~~~~~-~~~~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~ 77 (355)
T cd08230 1 MKAIAVKP-GKPG-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SG 77 (355)
T ss_pred CceeEecC-CCCC-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CC
Confidence 56777653 2333 899999999999999999999999999999999987532 235789999999999999999 99
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
|++||||++.+.. .|++|.+|+.|.+++|....+...+. ...+|+|+||+++|++.++++|++++ +. +++..+
T Consensus 78 ~~vGdrV~~~~~~-~cg~C~~c~~g~~~~c~~~~~~~~g~----~~~~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p 150 (355)
T cd08230 78 LSPGDLVVPTVRR-PPGKCLNCRIGRPDFCETGEYTERGI----KGLHGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEP 150 (355)
T ss_pred CCCCCEEEecccc-CCCcChhhhCcCcccCCCcceeccCc----CCCCccceeEEEeccccEEECCCCCC-cc-eeecch
Confidence 9999999766544 79999999999999998764322111 02469999999999999999999999 43 444445
Q ss_pred hhhhhhHhHhc------CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC---ChhhHHHHHHHcCCcEEecCCCH
Q 018246 168 GITVYSPMKYY------GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST---SPKKESEAISKLGADAFLVSSDP 238 (359)
Q Consensus 168 ~~ta~~~l~~~------~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~---~~~~~~~~~~~~g~~~v~~~~~~ 238 (359)
+.+++.++... ...++|++|||.|+|++|++++|+|++.|++|+++++ ++++++.+ +++|++.+ ++.+.
T Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~-~~~Ga~~v-~~~~~ 228 (355)
T cd08230 151 LSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV-EELGATYV-NSSKT 228 (355)
T ss_pred HHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH-HHcCCEEe-cCCcc
Confidence 54444443221 1246899999999999999999999999999999998 57787777 89999874 55443
Q ss_pred HHHH-HhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeC----HHHHHhcCcEEEEeecCCHHHHHH
Q 018246 239 AKVK-AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVP----IFALVGARRLVGGSNVGGMKETQE 311 (359)
Q Consensus 239 ~~~~-~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~----~~~~~~k~~~i~g~~~~~~~~~~~ 311 (359)
+... ....++|+|||++|+...+..+++.++++|+++.+|...+ ..+++ ...++.|++++.|+...+.+++++
T Consensus 229 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 308 (355)
T cd08230 229 PVAEVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ 308 (355)
T ss_pred chhhhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH
Confidence 2211 1234899999999987668999999999999999997664 34455 356778999999998888889999
Q ss_pred HHHHHHhCC------CcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 312 MLDFCAKHN------IAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 312 ~~~~l~~g~------i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++++.++. +++.+ ++|+++++++||+.+.++. +|+||++
T Consensus 309 ~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~ 355 (355)
T cd08230 309 AVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW 355 (355)
T ss_pred HHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence 999999877 44444 8999999999999886544 6999864
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=358.54 Aligned_cols=337 Identities=26% Similarity=0.373 Sum_probs=275.7
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+|++..+. ..++.+++.+++.|.|+++||+|||.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|+
T Consensus 2 ~~~a~~~~--~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 79 (368)
T cd08300 2 TCKAAVAW--EAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVK 79 (368)
T ss_pred cceEEEEe--cCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCC
Confidence 46666554 3455689999999999999999999999999999999988766556789999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccc-ccccCC--------C-----CCCCCccceEEEeeCCceEECCCC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY-NSIDRD--------G-----TKTYGGYSDLIVVDQHYVLRFPDN 155 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~--------g-----~~~~g~~a~~~~~~~~~~~~lp~~ 155 (359)
+||||++.+. ..|+.|.+|+.+.++.|.++.... .+...+ | ....|+|+||+++|++.++++|++
T Consensus 80 vGdrV~~~~~-~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 158 (368)
T cd08300 80 PGDHVIPLYT-PECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPE 158 (368)
T ss_pred CCCEEEEcCC-CCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCC
Confidence 9999976644 499999999999999998753210 000000 0 112479999999999999999999
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+++++++.+++++.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|++++++
T Consensus 159 l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~lGa~~~i~ 237 (368)
T cd08300 159 APLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKFGATDCVN 237 (368)
T ss_pred CChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCCEEEc
Confidence 99999999999999999998777777999999999999999999999999999 799999999999888 8999999998
Q ss_pred CCCH-----HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecC-
Q 018246 235 SSDP-----AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVG- 304 (359)
Q Consensus 235 ~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~- 304 (359)
+++. +.+.++++ ++|+|+|++|+...+..++++++++ |+++.+|.... ....+...+. ++.++.++...
T Consensus 238 ~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~ 316 (368)
T cd08300 238 PKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGG 316 (368)
T ss_pred ccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecc
Confidence 7652 22344444 7999999999876689999999886 99999997642 2344444443 34466665543
Q ss_pred --CHHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 305 --GMKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 305 --~~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
...++.++++++.++++++ .+ ++|+|+++++||+.+.+++. .|++++
T Consensus 317 ~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~ 368 (368)
T cd08300 317 WKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK 368 (368)
T ss_pred cCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence 3567899999999999975 34 89999999999999987765 688874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=358.13 Aligned_cols=336 Identities=22% Similarity=0.325 Sum_probs=264.1
Q ss_pred ccceeeeeecCCCCCccceeeecCCCC-------CCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETG-------ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVG 82 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG 82 (359)
.|+++++. .++.+++++++.|+|+ ++||||||.++|||++|++++.|..+ ..+|.++|||++|+|+++|
T Consensus 2 ~mka~v~~---~~~~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG 77 (393)
T TIGR02819 2 GNRGVVYL---GPGKVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKG 77 (393)
T ss_pred CceEEEEe---cCCceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEc
Confidence 57887765 3456889999999874 68999999999999999999988654 3568999999999999999
Q ss_pred CCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccc----cccccCCCCCCCCccceEEEeeCC--ceEECCCCC
Q 018246 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT----YNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNM 156 (359)
Q Consensus 83 ~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l 156 (359)
++|++|++||||++.+.. .|+.|.+|+.|.++.|.+.... +.+....+ ..+|+|+||+++|+. .++++|+++
T Consensus 78 ~~V~~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~-~~~G~~aey~~v~~~~~~l~~vP~~~ 155 (393)
T TIGR02819 78 RDVEFIKIGDIVSVPFNI-ACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG-GWVGGQSEYVMVPYADFNLLKFPDRD 155 (393)
T ss_pred CccccccCCCEEEEeccc-CCCCChHHHCcCcccCcCCCCCCccceecccccC-CCCCceEEEEEechhhCceEECCCcc
Confidence 999999999999877654 7999999999999999975321 00110001 136999999999964 699999987
Q ss_pred Cc----cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcE
Q 018246 157 PL----DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 157 ~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
+. ++++++.+++.++|+++.. ..+++|++|||.|+|++|++++|+|+.+|++ |++++++++|++.+ +++|++.
T Consensus 156 ~~~~~~~~~a~l~~~~~ta~~a~~~-~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a-~~~Ga~~ 233 (393)
T TIGR02819 156 QALEKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQA-RSFGCET 233 (393)
T ss_pred cccccccceeeeccHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH-HHcCCeE
Confidence 53 3567888889999999875 4568999999999999999999999999996 45556778888888 8899975
Q ss_pred EecCCCH---HHHHHhcC--CccEEEECCCCh--------------hhHHHHHhccccCCEEEEecCCC-C-C-------
Q 018246 232 FLVSSDP---AKVKAAMG--TMDYIIDTVSAV--------------HSLAPLLGLLKVNGKLVTVGLPE-K-P------- 283 (359)
Q Consensus 232 v~~~~~~---~~~~~~~~--~~d~vid~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~~-~-~------- 283 (359)
+.+.++. +.+.+++. ++|++||++|.+ .+++.+++.++++|+++.+|... + .
T Consensus 234 v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~ 313 (393)
T TIGR02819 234 VDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAA 313 (393)
T ss_pred EecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccc
Confidence 4433322 33445543 799999999986 36999999999999999999853 1 1
Q ss_pred ----eeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc---cE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 284 ----LEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA---DI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 284 ----~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~---~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
.++....++.+++++.+........+.++++++++|++++ .+ ++|||+++++||+.+.++. .+|++|.++
T Consensus 314 ~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~-~~Kvvi~~~ 391 (393)
T TIGR02819 314 KTGSLSIRFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGA-AKKFVIDPH 391 (393)
T ss_pred cccccccchHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCC-ceEEEEeCC
Confidence 2334555567778887754333233478999999999864 34 6899999999999998775 489999864
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=349.71 Aligned_cols=331 Identities=31% Similarity=0.588 Sum_probs=289.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++.+. .+.+.+++++++.|+++++||+||+.++++|++|++.+.|..+....|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~--~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~ 78 (333)
T cd08296 1 YKAVQVT--EPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKV 78 (333)
T ss_pred CeEEEEc--cCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCC
Confidence 5666655 33356899999999999999999999999999999999886654456889999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|++.+....|++|.+|..|.++.|...... |...+|+|++|+.++.+.++++|+++++++++.+++.+.|
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~-------~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~t 151 (333)
T cd08296 79 GDRVGVGWHGGHCGTCDACRRGDFVHCENGKVT-------GVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVT 151 (333)
T ss_pred CCEEEeccccCCCCCChhhhCcCcccCCCCCcc-------CcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHH
Confidence 999988777779999999999999999876432 3334699999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc--CCc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTM 248 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~ 248 (359)
||+++... .+.++++|||+|+|++|++++++|+++|++|+++++++++.+.+ +++|+++++++...+....+. .++
T Consensus 152 a~~~~~~~-~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~~~ 229 (333)
T cd08296 152 TFNALRNS-GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLA-RKLGAHHYIDTSKEDVAEALQELGGA 229 (333)
T ss_pred HHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH-HHcCCcEEecCCCccHHHHHHhcCCC
Confidence 99999777 66999999999999999999999999999999999999998888 889999999877643322221 479
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEEE
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELV 328 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~~ 328 (359)
|+++|+.|....+..++++++++|+++.+|......+++...++.+++++.++..+...+++.+++++.++++++.++.|
T Consensus 230 d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 309 (333)
T cd08296 230 KLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVRPMVETF 309 (333)
T ss_pred CEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCCceEEEE
Confidence 99999987666689999999999999999987656677777788999999999888888999999999999998777889
Q ss_pred ccccHHHHHHHHHcCCccEEEEEE
Q 018246 329 RMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 329 ~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++++.+||+.+.+++.+||+|++
T Consensus 310 ~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 310 PLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred EHHHHHHHHHHHHCCCCceeEEeC
Confidence 999999999999999989999874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=321.20 Aligned_cols=311 Identities=21% Similarity=0.281 Sum_probs=276.3
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
.+.+++...+..+.+++++.+.|+|+|+|++||..++|+|+-|..+++|.+...+.|++||-|++|+|+.+|++|+++++
T Consensus 9 ~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvtdrkv 88 (336)
T KOG1197|consen 9 LKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVTDRKV 88 (336)
T ss_pred heEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcccccc
Confidence 46778887788889999999999999999999999999999999999999977889999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||||+... +.|.|+++..+|...++++|+.+++++||++...++|
T Consensus 89 GDrVayl~-----------------------------------~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lT 133 (336)
T KOG1197|consen 89 GDRVAYLN-----------------------------------PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLT 133 (336)
T ss_pred ccEEEEec-----------------------------------cchhhheeccccceeeccCCcccCHHHHHHHHHHHHH
Confidence 99997552 5699999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc----
Q 018246 171 VYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM---- 245 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---- 245 (359)
||.-++....+++|++||++. +|++|+++.|++|..|++++++.++.++.+.+ ++.|+.|.++++.+|.+++..
T Consensus 134 Ay~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~a-kenG~~h~I~y~~eD~v~~V~kiTn 212 (336)
T KOG1197|consen 134 AYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIA-KENGAEHPIDYSTEDYVDEVKKITN 212 (336)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHH-HhcCCcceeeccchhHHHHHHhccC
Confidence 999999999999999999986 59999999999999999999999999998888 899999999999987766653
Q ss_pred -CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecCC----HH----HHHHHHHH
Q 018246 246 -GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVGG----MK----ETQEMLDF 315 (359)
Q Consensus 246 -~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~~----~~----~~~~~~~~ 315 (359)
.|+|+++|.+|... +...+.+|++.|.+|.+|..++. -+++...+--|++++..-++.. .. ...+++.+
T Consensus 213 gKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~al 291 (336)
T KOG1197|consen 213 GKGVDAVYDSVGKDT-FAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFAL 291 (336)
T ss_pred CCCceeeeccccchh-hHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHH
Confidence 28999999999977 99999999999999999987753 3455555555666665433221 12 25677888
Q ss_pred HHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCCcC
Q 018246 316 CAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358 (359)
Q Consensus 316 l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~~ 358 (359)
+.+|.+++.+ ++|||+++.+|+..+.++...||+++...++..
T Consensus 292 vnsg~lk~~I~~~ypls~vadA~~diesrktvGkvlLlp~~~~~ 335 (336)
T KOG1197|consen 292 VNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVLLLPGPEKE 335 (336)
T ss_pred hhcCccceeeeeecchHHHHHHHHHHHhhhccceEEEeCCcccc
Confidence 8999999999 899999999999999999999999999998854
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=350.75 Aligned_cols=328 Identities=23% Similarity=0.363 Sum_probs=269.7
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+.. ++.+++.+.+.|.| +++||+|||.++++|++|++.+.+... ..+|.++|||++|+|+++|+++++|+
T Consensus 1 Mka~~~~~---~~~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~ 76 (347)
T PRK10309 1 MKSVVNDT---DGIVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLH 76 (347)
T ss_pred CceEEEeC---CCceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCC
Confidence 56666653 34688999999998 599999999999999999875422111 23578999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+.. .|+.|.+|..|.++.|.++.+. |...+|+|++|+.+|++.++++|+++++++++.+. +..
T Consensus 77 vGd~V~~~~~~-~c~~c~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~ 147 (347)
T PRK10309 77 PGDAVACVPLL-PCFTCPECLRGFYSLCAKYDFI-------GSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PIT 147 (347)
T ss_pred CCCEEEECCCc-CCCCCcchhCcCcccCCCccee-------ccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHH
Confidence 99999887666 7999999999999999875432 23457999999999999999999999999988763 345
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHHHhcC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDP--AKVKAAMG 246 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~ 246 (359)
++|+++.. ..+++|++|||+|+|++|++++|+|+.+|++ |+++++++++.+.+ +++|+++++++++. +.+.+.+.
T Consensus 148 ~~~~~~~~-~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~ 225 (347)
T PRK10309 148 VGLHAFHL-AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA-KSLGAMQTFNSREMSAPQIQSVLR 225 (347)
T ss_pred HHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcCCceEecCcccCHHHHHHHhc
Confidence 57777644 4558999999999999999999999999995 78899999998887 89999999887643 23344432
Q ss_pred --Ccc-EEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeC---HHHHHhcCcEEEEeecCC-----HHHHHHHHHH
Q 018246 247 --TMD-YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVP---IFALVGARRLVGGSNVGG-----MKETQEMLDF 315 (359)
Q Consensus 247 --~~d-~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~ 315 (359)
++| ++|||+|+..++..++++++++|+++.+|...+..+++ +..++.|++++.|+..+. ..++++++++
T Consensus 226 ~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 305 (347)
T PRK10309 226 ELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRL 305 (347)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHH
Confidence 688 99999998877899999999999999999765443333 235678999999987642 3678999999
Q ss_pred HHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 316 CAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 316 l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++|+++ +.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus 306 ~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 306 LTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred HHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence 9999984 444 8899999999999999888889999976
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=342.90 Aligned_cols=333 Identities=59% Similarity=1.013 Sum_probs=294.0
Q ss_pred ecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 18 ARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
.+....++++.+++.|+++++||+||+.++++|++|++.+.|......+|.++|||++|+|+++|++++.|++||+|++.
T Consensus 5 ~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 84 (337)
T cd05283 5 ARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVG 84 (337)
T ss_pred EecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCEEEEe
Confidence 33566889999999999999999999999999999999998876555668899999999999999999999999999877
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 177 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~ 177 (359)
+..+.|++|.+|..+..++|....+.+.+...++...+|+|++|+.++.+.++++|+++++++++.+.+.+.|||+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~ 164 (337)
T cd05283 85 CQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR 164 (337)
T ss_pred cCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHh
Confidence 77779999999999999999887655444444444567999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.. +++|++|+|.|+|++|++++++|++.|++|+++++++++.+.+ +++|++.+++.+..+.......++|+++||++.
T Consensus 165 ~~-~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~ 242 (337)
T cd05283 165 NG-VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDA-LKLGADEFIATKDPEAMKKAAGSLDLIIDTVSA 242 (337)
T ss_pred cC-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHcCCcEEecCcchhhhhhccCCceEEEECCCC
Confidence 76 5899999999899999999999999999999999999998888 789999998877654444444689999999998
Q ss_pred hhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEEEccccHHHHH
Q 018246 258 VHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAM 337 (359)
Q Consensus 258 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~~~l~~~~~a~ 337 (359)
...+..++++++++|+++.+|.......++...++.+++++.++.....++++.++++++++++++.++.++++++++||
T Consensus 243 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~ 322 (337)
T cd05283 243 SHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIKPWVEVIPMDGINEAL 322 (337)
T ss_pred cchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCccceEEEEHHHHHHHH
Confidence 75588999999999999999876554466777777899999999988889999999999999998877899999999999
Q ss_pred HHHHcCCccEEEEEE
Q 018246 338 ERLAKSDVKYRFVID 352 (359)
Q Consensus 338 ~~~~~~~~~gkvvv~ 352 (359)
+.+.+++..||+|++
T Consensus 323 ~~~~~~~~~~k~v~~ 337 (337)
T cd05283 323 ERLEKGDVRYRFVLD 337 (337)
T ss_pred HHHHcCCCcceEeeC
Confidence 999999988999874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=349.38 Aligned_cols=311 Identities=16% Similarity=0.197 Sum_probs=247.8
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC----CCCCCcccccccEEEEEeCCCCCCCCCCCEEEE
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV----TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v 96 (359)
.++++++.+.+.|. +++||+|||+++|||++|++.+.|.+.. ..+|.++|||++|+|+++|.. .|++||||++
T Consensus 10 ~~~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~ 86 (341)
T cd08237 10 RPKFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTKVVM 86 (341)
T ss_pred ccceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCEEEE
Confidence 56679999999995 9999999999999999999999987532 357899999999999998864 6999999988
Q ss_pred eccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhH
Q 018246 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMK 176 (359)
Q Consensus 97 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~ 176 (359)
.+.. .|. |..| +..+.|.+..+. |...+|+|+||+++|+++++++|+++++++|+ +..+..++|+++.
T Consensus 87 ~~~~-~~~-~~~~--~~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~ 154 (341)
T cd08237 87 VPNT-PVE-KDEI--IPENYLPSSRFR-------SSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAIS 154 (341)
T ss_pred CCCC-Cch-hccc--chhccCCCccee-------EecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHH
Confidence 7665 365 5455 356778765432 22346999999999999999999999998876 4457788888886
Q ss_pred hc--CCCCCCCEEEEECCchHHHHHHHHHHH-CCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEE
Q 018246 177 YY--GMTEPGKHLGVAGLGGLGHVAVKIGKA-FGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 177 ~~--~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.. ..+++|++|||.|+|++|++++|+|++ .|+ +|++++++++|++.+ ++.+.+..++ +.... .++|+||
T Consensus 155 ~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a-~~~~~~~~~~----~~~~~--~g~d~vi 227 (341)
T cd08237 155 RFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF-SFADETYLID----DIPED--LAVDHAF 227 (341)
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH-hhcCceeehh----hhhhc--cCCcEEE
Confidence 53 234789999999999999999999986 564 899999999998888 5666554332 11111 2699999
Q ss_pred ECCCC---hhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhC-----CCccc
Q 018246 253 DTVSA---VHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKH-----NIAAD 324 (359)
Q Consensus 253 d~~g~---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g-----~i~~~ 324 (359)
|++|+ +.++..++++++++|+++.+|......+++...++.|++++.|+..+...++++++++++++ .+++.
T Consensus 228 D~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (341)
T cd08237 228 ECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVAEYLRKL 307 (341)
T ss_pred ECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCcccCChHHH
Confidence 99994 45689999999999999999976555677788888999999999887788899999999998 45565
Q ss_pred E-EEEccc---cHHHHHHHHHcCCccEEEEEEcC
Q 018246 325 I-ELVRMD---QINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 325 ~-~~~~l~---~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
+ ++|+|+ ++.++|+.+.++ ..||+||.++
T Consensus 308 i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~ 340 (341)
T cd08237 308 VGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE 340 (341)
T ss_pred hccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence 5 789986 455555555444 5799999864
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=343.64 Aligned_cols=337 Identities=26% Similarity=0.365 Sum_probs=281.1
Q ss_pred ceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCC----
Q 018246 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK---- 87 (359)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~---- 87 (359)
|++++.. ..+.+++++++.|.|+++||+|||.++++|++|++...|.++...+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~--~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~ 79 (361)
T cd08231 2 RAAVLTG--PGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAG 79 (361)
T ss_pred eEEEEcC--CCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccC
Confidence 3444443 3347999999999999999999999999999999999887653456889999999999999999986
Q ss_pred --CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC-ceEECCCCCCccccccc
Q 018246 88 --FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH-YVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 88 --~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~-~~~~lp~~l~~~~aa~l 164 (359)
|++||+|++.+.. +|+.|.+|+.+.++.|.+..+...+....+....|+|++|++++++ .++++|++++.++++.+
T Consensus 80 ~~~~~Gd~V~~~~~~-~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~ 158 (361)
T cd08231 80 EPLKVGDRVTWSVGA-PCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPA 158 (361)
T ss_pred CccCCCCEEEEcccC-CCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHh
Confidence 9999999776554 8999999999999999987544222111112246999999999986 79999999999999999
Q ss_pred cchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH----
Q 018246 165 LCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---- 239 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---- 239 (359)
++++.|||+++.....+++|++|||+|+|.+|++++++|++.|+ +|+++++++++.+.+ +++|++.++++++.+
T Consensus 159 ~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~ 237 (361)
T cd08231 159 NCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA-REFGADATIDIDELPDPQR 237 (361)
T ss_pred cCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCCeEEcCcccccHHH
Confidence 89999999999988887799999999999999999999999999 999999999998877 889999988776431
Q ss_pred --HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCCHHHHHHHH
Q 018246 240 --KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGGMKETQEML 313 (359)
Q Consensus 240 --~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 313 (359)
.+.+++. ++|++||++|+...+..++++++++|+++.+|.... ...++...++.+++++.++..++.+++++++
T Consensus 238 ~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (361)
T cd08231 238 RAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAV 317 (361)
T ss_pred HHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHH
Confidence 2444443 799999999986668899999999999999987542 3456666678899999999888888899999
Q ss_pred HHHHhC--CC--cccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 314 DFCAKH--NI--AADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 314 ~~l~~g--~i--~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++.++ .+ .+.+ ++|+++++++||+.+.++. .+|+||.+
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~~k~vi~~ 361 (361)
T cd08231 318 RFLERTQDRFPFAELVTHRYPLEDINEALELAESGT-ALKVVIDP 361 (361)
T ss_pred HHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC-ceEEEeCC
Confidence 999888 43 3343 7899999999999998876 48999863
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=340.60 Aligned_cols=327 Identities=27% Similarity=0.423 Sum_probs=277.2
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC---C--------CCCCCCcccccccEEEE
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW---G--------VTNYPIVPGHEIVGTVT 79 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~---~--------~~~~p~~~G~e~~G~V~ 79 (359)
||++++. +++.+++.+++.|+|+++||+||+.++++|++|++.+.+.. + ...+|.++|||++|+|+
T Consensus 1 mka~~~~---~~~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~ 77 (351)
T cd08233 1 MKAARYH---GRKDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVV 77 (351)
T ss_pred CceEEEe---cCCceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEE
Confidence 5677765 35568999999999999999999999999999998765321 1 12367899999999999
Q ss_pred EeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCC-CCCccceEEEeeCCceEECCCCCCc
Q 018246 80 KVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTK-TYGGYSDLIVVDQHYVLRFPDNMPL 158 (359)
Q Consensus 80 ~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~a~~~~~~~~~~~~lp~~l~~ 158 (359)
++|++++.|++||+|+..+.. .|+.|.+|.+|.++.|.+..+. |.. .+|+|++|++++.+.++++|+++++
T Consensus 78 ~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~a~~~~~~~~~~~~lP~~~~~ 149 (351)
T cd08233 78 EVGSGVTGFKVGDRVVVEPTI-KCGTCGACKRGLYNLCDSLGFI-------GLGGGGGGFAEYVVVPAYHVHKLPDNVPL 149 (351)
T ss_pred EeCCCCCCCCCCCEEEECCCC-CCCCChHHhCcCcccCCCCcee-------ccCCCCCceeeEEEechHHeEECcCCCCH
Confidence 999999999999999876554 8999999999999999876421 111 2599999999999999999999999
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
++++.+ .++.|||+++ ....+++|++|||+|+|.+|++++|+|+..|+ +|+++++++++.+.+ +++|++.++++++
T Consensus 150 ~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~ga~~~i~~~~ 226 (351)
T cd08233 150 EEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA-EELGATIVLDPTE 226 (351)
T ss_pred HHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEECCCc
Confidence 988765 6778999998 55566899999999999999999999999999 899999999998887 7899999998876
Q ss_pred HHH---HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHH
Q 018246 238 PAK---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312 (359)
Q Consensus 238 ~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~ 312 (359)
.+. +.+... ++|+++|++|+...+..++++++++|+++.+|......+++...++.+++++.++..+...+++++
T Consensus 227 ~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 306 (351)
T cd08233 227 VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEV 306 (351)
T ss_pred cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHH
Confidence 433 333443 599999999976668999999999999999998766667788888899999999887777889999
Q ss_pred HHHHHhCCCcc--cE-EEEccccH-HHHHHHHHcCCcc-EEEEE
Q 018246 313 LDFCAKHNIAA--DI-ELVRMDQI-NTAMERLAKSDVK-YRFVI 351 (359)
Q Consensus 313 ~~~l~~g~i~~--~~-~~~~l~~~-~~a~~~~~~~~~~-gkvvv 351 (359)
+++++++++++ .+ ++|+++|+ ++||+.+.+++.. ||+||
T Consensus 307 ~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~ 350 (351)
T cd08233 307 IDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV 350 (351)
T ss_pred HHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence 99999999953 34 79999996 7999999998875 99987
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=329.11 Aligned_cols=299 Identities=18% Similarity=0.208 Sum_probs=242.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecc-hhhhhhhccCCCC---CCCCCcccccccEEEEEeCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGIC-HSDLHCARNEWGV---TNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~-~~D~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
++++++. .++.+++.+.+.|+|+++||+|||.+++|| ++|++.+.|.++. ..+|.++|||++|+|+++|+++
T Consensus 2 ~ka~~~~---~~~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v- 77 (308)
T TIGR01202 2 TQAIVLS---GPNQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT- 77 (308)
T ss_pred ceEEEEe---CCCeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-
Confidence 4556554 456799999999999999999999999996 7999988887643 3579999999999999999998
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
.|++||||++.+ ..|..|.. ...|+|+||+++|++.++++|++++++. +.+ .
T Consensus 78 ~~~vGdrV~~~~-----~~c~~~~~---------------------~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~ 129 (308)
T TIGR01202 78 GFRPGDRVFVPG-----SNCYEDVR---------------------GLFGGASKRLVTPASRVCRLDPALGPQG-ALL-A 129 (308)
T ss_pred CCCCCCEEEEeC-----cccccccc---------------------ccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-h
Confidence 599999997532 22322211 1249999999999999999999999864 444 3
Q ss_pred hhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc
Q 018246 167 AGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM 245 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 245 (359)
...|||+++... . .++++|||+|+|++|++++|+|+++|++ |++++.+++|++.+ .. .+++|+.+. ..
T Consensus 130 ~~~~a~~~~~~~-~-~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a-~~---~~~i~~~~~-----~~ 198 (308)
T TIGR01202 130 LAATARHAVAGA-E-VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA-TG---YEVLDPEKD-----PR 198 (308)
T ss_pred HHHHHHHHHHhc-c-cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh-hh---ccccChhhc-----cC
Confidence 468999999764 3 4688999999999999999999999996 66677777776655 33 344554321 23
Q ss_pred CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc--
Q 018246 246 GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA-- 323 (359)
Q Consensus 246 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~-- 323 (359)
.++|+||||+|+..+++.++++++++|+++.+|......++++..++.|++++.++..+..+++++++++++++++++
T Consensus 199 ~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~ 278 (308)
T TIGR01202 199 RDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLDG 278 (308)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChhh
Confidence 479999999999876899999999999999999876556677777888999999988877888999999999999975
Q ss_pred cE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 324 DI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 324 ~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.+ ++|||+++++||+.+.++...+|++++
T Consensus 279 ~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 279 LITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred ccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 23 899999999999998877667999874
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=326.81 Aligned_cols=330 Identities=21% Similarity=0.320 Sum_probs=271.6
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++++. +++.+++.+++.|.|+++||+||+.++++|++|++.+.|.++...+|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~---~~~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 77 (339)
T PRK10083 1 MKSIVIE---KPNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARI 77 (339)
T ss_pred CeEEEEe---cCCeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCC
Confidence 4666554 3557889999999999999999999999999999998887654456889999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|++.+.. .|+.|.+|..+.+++|.++... +...+|+|++|+.++.+.++++|+++++++++ +...+.+
T Consensus 78 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~ 148 (339)
T PRK10083 78 GERVAVDPVI-SCGHCYPCSIGKPNVCTSLVVL-------GVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTI 148 (339)
T ss_pred CCEEEEcccc-CCCCCccccCcCcccCCCCceE-------EEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHH
Confidence 9999887766 6999999999999999866432 22346999999999999999999999998875 5566777
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHH-CCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc-C-
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA-FGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM-G- 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-~- 246 (359)
++.++ ....+++|++|+|+|+|++|++++|+|+. +|+ .|+++++++++.+.+ +++|+++++++++.+....+. .
T Consensus 149 a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~g 226 (339)
T PRK10083 149 AANVT-GRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA-KESGADWVINNAQEPLGEALEEKG 226 (339)
T ss_pred HHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH-HHhCCcEEecCccccHHHHHhcCC
Confidence 77544 44566999999999999999999999997 699 577788888888777 889999999877543333332 1
Q ss_pred -CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc--
Q 018246 247 -TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA-- 323 (359)
Q Consensus 247 -~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~-- 323 (359)
++|++||++|+...+..++++++++|+++.+|.......++...+..+++++.+... ...++++++++++++++++
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~ 305 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRL-NANKFPVVIDWLSKGLIDPEK 305 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEec-ChhhHHHHHHHHHcCCCChHH
Confidence 467999999976668999999999999999987654444455555678888887754 4577999999999999986
Q ss_pred -cEEEEccccHHHHHHHHHcCC-ccEEEEEEcCC
Q 018246 324 -DIELVRMDQINTAMERLAKSD-VKYRFVIDVGN 355 (359)
Q Consensus 324 -~~~~~~l~~~~~a~~~~~~~~-~~gkvvv~~~~ 355 (359)
..+.|+++++++|++.+.++. ..+|+++.+.+
T Consensus 306 ~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 306 LITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred heeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 348999999999999988653 56999998764
|
|
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=324.38 Aligned_cols=331 Identities=27% Similarity=0.496 Sum_probs=281.2
Q ss_pred cceeeeeecCCCCCcc-ceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFS-PFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+.. ++... +++++.|.+.++||+|||.++++|++|++.+.|..+. ..|.++|||++|+|+++|++++.|+
T Consensus 1 mka~~~~~---~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~ 76 (338)
T PRK09422 1 MKAAVVNK---DHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLK 76 (338)
T ss_pred CeEEEecC---CCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCC
Confidence 56666653 23344 7889999999999999999999999999988876542 2367899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|++.+....|++|.+|..+..++|.+..+. |...+|+|++|+.++.+.++++|+++++++++++++.+.
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ 149 (338)
T PRK09422 77 VGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNA-------GYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGV 149 (338)
T ss_pred CCCEEEEccCCCCCCCChhhcCCCcccCCCcccc-------CccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchh
Confidence 9999988888889999999999999999876431 334569999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHH-CCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-H---HHHHHh
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA-FGLKVTVISTSPKKESEAISKLGADAFLVSSD-P---AKVKAA 244 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~ 244 (359)
|||+++ ....+++|++|||+|+|++|++++++|++ .|++|+++++++++.+.+ +++|++.+++++. . ..+.+.
T Consensus 150 ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~v~~~ 227 (338)
T PRK09422 150 TTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALA-KEVGADLTINSKRVEDVAKIIQEK 227 (338)
T ss_pred HHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHH-HHcCCcEEecccccccHHHHHHHh
Confidence 999998 45556999999999999999999999998 499999999999999988 8999999988754 2 334445
Q ss_pred cCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCccc
Q 018246 245 MGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAAD 324 (359)
Q Consensus 245 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~ 324 (359)
.+++|+++.+.++...+..++++++++|+++.+|.......++...+..++.++.++.....++++.+++++.++++.+.
T Consensus 228 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~ 307 (338)
T PRK09422 228 TGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVPK 307 (338)
T ss_pred cCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCCcc
Confidence 56789555555555558999999999999999987655556677777778899988776677889999999999999877
Q ss_pred EEEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 325 IELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 325 ~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
++.++++++++||+.+.++...||+++.+.
T Consensus 308 v~~~~~~~~~~a~~~~~~~~~~gkvvv~~~ 337 (338)
T PRK09422 308 VQLRPLEDINDIFDEMEQGKIQGRMVIDFT 337 (338)
T ss_pred EEEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence 777899999999999999888899998753
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=326.50 Aligned_cols=331 Identities=32% Similarity=0.483 Sum_probs=284.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
||++++..++ ..+++.+.+.|++.+++|+|++.++++|++|+....|.++ ...+|.++|+|++|+|+++|++++.
T Consensus 1 ~ka~~~~~~~--~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~ 78 (340)
T cd05284 1 MKAARLYEYG--KPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDG 78 (340)
T ss_pred CeeeEeccCC--CCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCc
Confidence 4666666432 4588888888999999999999999999999999887654 3455789999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+..+.. .|+.|..|..|..++|.+..+. |...+|+|++|++++.++++++|+++++++++.+++.
T Consensus 79 ~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~ 150 (340)
T cd05284 79 LKEGDPVVVHPPW-GCGTCRYCRRGEENYCENARFP-------GIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADA 150 (340)
T ss_pred CcCCCEEEEcCCC-CCCCChHHhCcCcccCCCCccc-------CccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcch
Confidence 9999999877665 8999999999999999988654 3345699999999999999999999999999999999
Q ss_pred hhhhhhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHHH
Q 018246 168 GITVYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~ 243 (359)
+.|||+++... ..+.++++|||+|+|.+|++++++|+..| ++|+++.+++++.+.+ +++|+++++++++. +.+.+
T Consensus 151 ~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~ 229 (340)
T cd05284 151 GLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA-ERLGADHVLNASDDVVEEVRE 229 (340)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH-HHhCCcEEEcCCccHHHHHHH
Confidence 99999999876 55688999999999889999999999999 7999999999998888 89999999987764 23333
Q ss_pred hcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCC
Q 018246 244 AMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321 (359)
Q Consensus 244 ~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i 321 (359)
+.. ++|+++|++|+...+..++++|+++|+++.+|.... ..++....+.+++++.++......++++++++++++.+
T Consensus 230 ~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l 308 (340)
T cd05284 230 LTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKV 308 (340)
T ss_pred HhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcceEEEEEecccHHHHHHHHHHHHhCCC
Confidence 333 699999999986658999999999999999986543 44455555678999999887777889999999999999
Q ss_pred cccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 322 AADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 322 ~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.++.|+++++++|++.+.+++..||+++.+
T Consensus 309 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 309 KVEITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred CcceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 88778899999999999999988889999753
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=328.59 Aligned_cols=338 Identities=17% Similarity=0.237 Sum_probs=280.8
Q ss_pred CCcccceeeeeec--CCC-CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC----------CCCCCCccccc
Q 018246 7 TEHPQKAIGWAAR--DNT-GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG----------VTNYPIVPGHE 73 (359)
Q Consensus 7 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~----------~~~~p~~~G~e 73 (359)
.|.+|+++++... +.+ ..+++.+++.|.++++||+|++.++++|++|++...|... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 4667888887532 223 2478889999999999999999999999999988766411 11123588999
Q ss_pred ccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECC
Q 018246 74 IVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153 (359)
Q Consensus 74 ~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp 153 (359)
++|+|+++|++++.+++||+|++.+.. .|+.|..|..+.+++|.+..+. +. ...+|+|++|+++|...++++|
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~c~~~~~~~~~~~~~~--g~----~~~~g~~a~y~~v~~~~l~~iP 161 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSV-WDGNDPERAGGDPMFDPSQRIW--GY----ETNYGSFAQFALVQATQLMPKP 161 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccc-cccCcccccccccccccccccc--cc----cCCCCcceeEEEechHHeEECC
Confidence 999999999999999999999877654 7889999999999999875332 11 1246999999999999999999
Q ss_pred CCCCccccccccchhhhhhhHhHhc--CCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc
Q 018246 154 DNMPLDAGAPLLCAGITVYSPMKYY--GMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD 230 (359)
Q Consensus 154 ~~l~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~ 230 (359)
+++++++++.+++++.|||+++... ..+++|++|+|+|+ |++|++++++|++.|++++++++++++.+.+ +++|++
T Consensus 162 ~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~-~~~G~~ 240 (393)
T cd08246 162 KHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC-RALGAE 240 (393)
T ss_pred CCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHcCCC
Confidence 9999999999999999999998765 56789999999996 9999999999999999999999999999888 789999
Q ss_pred EEecCCCH-------------------------HHHHHhcC---CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC
Q 018246 231 AFLVSSDP-------------------------AKVKAAMG---TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 231 ~v~~~~~~-------------------------~~~~~~~~---~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
+++++++. ..+.++++ ++|+++|++|+.. +..++++++++|+++.+|....
T Consensus 241 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~ 319 (393)
T cd08246 241 GVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVCDRGGMVVICAGTTG 319 (393)
T ss_pred EEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHhccCCEEEEEcccCC
Confidence 98886331 12333333 6999999999855 8899999999999999986543
Q ss_pred -CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcC-CccEEEEEEc
Q 018246 283 -PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKS-DVKYRFVIDV 353 (359)
Q Consensus 283 -~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~-~~~gkvvv~~ 353 (359)
...++...++.++.++.++.....+++.+++++++++.+.+.+ ++|+++++++||+.+.++ +..||+++.+
T Consensus 320 ~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~~ 393 (393)
T cd08246 320 YNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGNMAVLV 393 (393)
T ss_pred CCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccceEEEeC
Confidence 3456667777889999998888888899999999999998655 899999999999999988 6789998753
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=331.51 Aligned_cols=320 Identities=18% Similarity=0.257 Sum_probs=253.4
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhh-ccCCCC------CCCCCcccccccEEEEEeCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCA-RNEWGV------TNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~-~g~~~~------~~~p~~~G~e~~G~V~~vG~ 83 (359)
|+++.+. .++.+++.+++.|.++++||+|||.++|+|++|++.+ .|.... ..+|.++|||++|+|+++|+
T Consensus 3 ~~a~~~~---~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 3 TKAWRMY---GKGDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred cEEEEEE---cCCceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 4444443 3446999999999999999999999999999999976 453211 23678999999999999999
Q ss_pred CCC-CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC----ceEECCCCCCc
Q 018246 84 NVS-KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH----YVLRFPDNMPL 158 (359)
Q Consensus 84 ~v~-~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~----~~~~lp~~l~~ 158 (359)
+|+ +|++||||++.+.. .|+.|..|. .+ |...+|+|+||+++|++ .++++|+++++
T Consensus 80 ~v~~~~~vGdrV~~~~~~-~c~~~~~c~--------~~----------g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~ 140 (410)
T cd08238 80 KWQGKYKPGQRFVIQPAL-ILPDGPSCP--------GY----------SYTYPGGLATYHIIPNEVMEQDCLLIYEGDGY 140 (410)
T ss_pred CccCCCCCCCEEEEcCCc-CCCCCCCCC--------Cc----------cccCCCcceEEEEecHHhccCCeEECCCCCCH
Confidence 998 69999999877654 688777662 11 12246999999999987 68999999999
Q ss_pred cccccc-c--chhhhhhhHh--------HhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCC---eEEEEeCChhhHHHH
Q 018246 159 DAGAPL-L--CAGITVYSPM--------KYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGL---KVTVISTSPKKESEA 223 (359)
Q Consensus 159 ~~aa~l-~--~~~~ta~~~l--------~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~---~V~~v~~~~~~~~~~ 223 (359)
++++.+ + +. .+++.++ .....+++|++|+|+| +|++|++++|+|++.|+ +|++++++++|++.+
T Consensus 141 ~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a 219 (410)
T cd08238 141 AEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARA 219 (410)
T ss_pred HHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHH
Confidence 988744 2 22 2234332 2345668999999997 59999999999999854 899999999999988
Q ss_pred HHHc--------CCc-EEecCCC-H---HHHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCC-CC--Cee
Q 018246 224 ISKL--------GAD-AFLVSSD-P---AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP-EK--PLE 285 (359)
Q Consensus 224 ~~~~--------g~~-~v~~~~~-~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~--~~~ 285 (359)
+++ |++ .++++++ . ..+.++++ ++|+++|++|...++..++++++++|+++.++.. .. ..+
T Consensus 220 -~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~ 298 (410)
T cd08238 220 -QRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAP 298 (410)
T ss_pred -HHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCcccc
Confidence 665 665 5677643 2 23444443 7999999999877799999999999988876542 22 346
Q ss_pred eCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 286 VPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 286 ~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
++...++.+++++.|+......+++++++++++|++++ .+ ++|||+++++||+.+. ++..||+|+.++.
T Consensus 299 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~~ 370 (410)
T cd08238 299 LNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQK 370 (410)
T ss_pred ccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECCC
Confidence 77788889999999998888889999999999999986 34 8999999999999999 6677999998854
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=323.46 Aligned_cols=333 Identities=18% Similarity=0.241 Sum_probs=271.3
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++++..+ +.+++.+.+.|.+.++||+|||.++++|++|++...|.+.....|.++|||++|+|+++|++++.+++
T Consensus 1 mka~~~~~~---~~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~ 77 (351)
T cd08285 1 MKAFAMLGI---GKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKP 77 (351)
T ss_pred CceEEEccC---CccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCC
Confidence 567776643 34788888888999999999999999999999988876554566889999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccccccchh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa~l~~~~ 168 (359)
||+|++.+.. .|+.|..|..|.++.|.+.... .. .+...+|+|++|+++|.+ .++++|+++++++++.++..+
T Consensus 78 Gd~V~~~~~~-~~~~c~~c~~g~~~~~~~~~~~---~~-~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~ 152 (351)
T cd08285 78 GDRVIVPAIT-PDWRSVAAQRGYPSQSGGMLGG---WK-FSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMM 152 (351)
T ss_pred CCEEEEcCcC-CCCCCHHHHCcCcccCcCCCCC---cc-ccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccch
Confidence 9999876654 8999999999999999875311 11 122356999999999974 899999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHh
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAA 244 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~ 244 (359)
.|||+++.. ..+++|++|||+|+|++|++++|+|++.|+ .|+++++++++.+.+ +++|+++++++++.+ .+..+
T Consensus 153 ~ta~~~~~~-~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~i~~~ 230 (351)
T cd08285 153 STGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELA-KEYGATDIVDYKNGDVVEQILKL 230 (351)
T ss_pred hhHHHHHHc-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCceEecCCCCCHHHHHHHH
Confidence 999999744 456999999999999999999999999999 688899998888777 889999999876543 23333
Q ss_pred c--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC--eeeCH--HHHHhcCcEEEEeecC-CHHHHHHHHHHHH
Q 018246 245 M--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP--LEVPI--FALVGARRLVGGSNVG-GMKETQEMLDFCA 317 (359)
Q Consensus 245 ~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~--~~~~~k~~~i~g~~~~-~~~~~~~~~~~l~ 317 (359)
. .++|+++|++|+...+..++++++++|+++.+|..... ..++. +....+..++.+.... ..++++++++++.
T Consensus 231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 310 (351)
T cd08285 231 TGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIE 310 (351)
T ss_pred hCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHH
Confidence 3 37999999999876689999999999999999876532 23332 2223456667665432 3567999999999
Q ss_pred hCCCcc---cE-EEEccccHHHHHHHHHcCC-ccEEEEEEc
Q 018246 318 KHNIAA---DI-ELVRMDQINTAMERLAKSD-VKYRFVIDV 353 (359)
Q Consensus 318 ~g~i~~---~~-~~~~l~~~~~a~~~~~~~~-~~gkvvv~~ 353 (359)
+|++++ .+ +.++++++++||+.+.+++ ..+|++|++
T Consensus 311 ~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 311 YGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred cCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 999987 34 4689999999999999876 468999864
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=320.84 Aligned_cols=331 Identities=29% Similarity=0.451 Sum_probs=281.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC------------CCCCCCcccccccEEE
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG------------VTNYPIVPGHEIVGTV 78 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~------------~~~~p~~~G~e~~G~V 78 (359)
||++.+.. ....+++.+++.|+++++||+||+.++++|++|++.+.|.++ ...+|.++|+|++|+|
T Consensus 1 ~~a~~~~~--~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V 78 (350)
T cd08240 1 MKAAAVVE--PGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEV 78 (350)
T ss_pred CeeEEecc--CCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEE
Confidence 56666654 334488889999999999999999999999999999887643 1234678999999999
Q ss_pred EEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCc
Q 018246 79 TKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPL 158 (359)
Q Consensus 79 ~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~ 158 (359)
+++|++++.+++||+|+..+.. .|+.|..|.++..++|....+. |....|++++|+.++.+.++++|+++++
T Consensus 79 ~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~p~~~s~ 150 (350)
T cd08240 79 VAVGPDAADVKVGDKVLVYPWI-GCGECPVCLAGDENLCAKGRAL-------GIFQDGGYAEYVIVPHSRYLVDPGGLDP 150 (350)
T ss_pred EeeCCCCCCCCCCCEEEECCcC-CCCCChHHHCcCcccCCCCCce-------eeeccCcceeeEEecHHHeeeCCCCCCH
Confidence 9999999999999999887766 8999999999999999775322 1224589999999999999999999999
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
++++.+.+.+.|||++++....++++++|||+|+|++|++++|+|+..|+ +|+++++++++.+.+ +++|++.+++.++
T Consensus 151 ~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~ 229 (350)
T cd08240 151 ALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAA-KAAGADVVVNGSD 229 (350)
T ss_pred HHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCcEEecCCC
Confidence 99999999999999999988877789999999999999999999999999 799999999998888 8899988888765
Q ss_pred HH---HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHH
Q 018246 238 PA---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEML 313 (359)
Q Consensus 238 ~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 313 (359)
.+ .+.+... ++|+++|++|....+..++++|+++|+++.+|........+......+++++.++.....+++.+++
T Consensus 230 ~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 309 (350)
T cd08240 230 PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELV 309 (350)
T ss_pred ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHH
Confidence 32 3333333 7999999999766689999999999999999876544344444455689999998888788899999
Q ss_pred HHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 314 DFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 314 ~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++++++.+++.. ..++++++++||+.+.+++..||+++.
T Consensus 310 ~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 310 ALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred HHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence 999999987644 889999999999999998888999975
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=322.57 Aligned_cols=336 Identities=21% Similarity=0.285 Sum_probs=276.5
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++.+. +++.+++.+++.|.+ ++++|+||+.++++|++|+..+.|.++...+|.++|||++|+|+++|+++++++
T Consensus 1 m~a~~~~---~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 77 (386)
T cd08283 1 MKALVWH---GKGDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLK 77 (386)
T ss_pred CeeEEEe---cCCCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCC
Confidence 5677765 456799999999988 499999999999999999999999876556788999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccc--------ccccCCCC-----CCCCccceEEEeeCC--ceEECCC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY--------NSIDRDGT-----KTYGGYSDLIVVDQH--YVLRFPD 154 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~--------~~~~~~g~-----~~~g~~a~~~~~~~~--~~~~lp~ 154 (359)
+||+|++.+.. .|++|.+|..+.+++|.++.... ......|. ..+|+|++|++++.+ .++++|+
T Consensus 78 ~Gd~V~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~ 156 (386)
T cd08283 78 VGDRVVVPFTI-ACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPD 156 (386)
T ss_pred CCCEEEEcCcC-CCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCC
Confidence 99999776555 79999999999999998864321 10011111 136999999999988 8999999
Q ss_pred CCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEe
Q 018246 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFL 233 (359)
Q Consensus 155 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~ 233 (359)
+++++++++++..+.|||+++ ....+.+|++|||+|+|.+|++++++|++.|+ +|+++++++++.+.+ ++++...++
T Consensus 157 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~-~~~~~~~vi 234 (386)
T cd08283 157 DLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA-RSHLGAETI 234 (386)
T ss_pred CCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCcEEE
Confidence 999999999999999999999 66667999999999999999999999999998 699999999998888 667433567
Q ss_pred cCCCHH-H---HHHhcC--CccEEEECCCCh---------------------hhHHHHHhccccCCEEEEecCCCC-Cee
Q 018246 234 VSSDPA-K---VKAAMG--TMDYIIDTVSAV---------------------HSLAPLLGLLKVNGKLVTVGLPEK-PLE 285 (359)
Q Consensus 234 ~~~~~~-~---~~~~~~--~~d~vid~~g~~---------------------~~~~~~~~~l~~~G~~v~~g~~~~-~~~ 285 (359)
++...+ . +..+.. ++|++||++|+. ..++.++++++++|+++.+|.... ...
T Consensus 235 ~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~ 314 (386)
T cd08283 235 NFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNK 314 (386)
T ss_pred cCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCc
Confidence 665432 2 333333 799999999753 347889999999999999987654 334
Q ss_pred eCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCccc--E-EEEccccHHHHHHHHHcCC-ccEEEEEE
Q 018246 286 VPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAAD--I-ELVRMDQINTAMERLAKSD-VKYRFVID 352 (359)
Q Consensus 286 ~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~--~-~~~~l~~~~~a~~~~~~~~-~~gkvvv~ 352 (359)
++....+.+++++.+........++++++++.++++.+. + +.|+++++++||+.+.+++ ..+|++++
T Consensus 315 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~ 385 (386)
T cd08283 315 FPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLK 385 (386)
T ss_pred cCHHHHHhCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEec
Confidence 555566789999999877667789999999999999752 3 7899999999999988876 45899985
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=323.22 Aligned_cols=341 Identities=18% Similarity=0.249 Sum_probs=284.7
Q ss_pred CCcccceeeeee--cCCC-CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC----------CCCCC-Ccccc
Q 018246 7 TEHPQKAIGWAA--RDNT-GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG----------VTNYP-IVPGH 72 (359)
Q Consensus 7 ~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~----------~~~~p-~~~G~ 72 (359)
++++||++.++. ++.+ +.+++.+++.|.+++++|+||+.++++|++|++...+... ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 567899999965 4433 5689999999999999999999999999999877655321 01123 37999
Q ss_pred cccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEEC
Q 018246 73 EIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 73 e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~l 152 (359)
|++|+|+++|++++.+++||+|++.+.. .|++|.+|..|.+++|....+. +. ...+|+|++|++++++.++++
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--g~----~~~~g~~ae~~~v~~~~~~~v 156 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQ-VDLTAPDGRVGDPMLSSEQRIW--GY----ETNFGSFAEFALVKDYQLMPK 156 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEcccc-ccCCchhhccCccccccccccc--cc----cCCCccceEEEEechHHeEEC
Confidence 9999999999999999999999877554 8999999999999999765321 11 124689999999999999999
Q ss_pred CCCCCccccccccchhhhhhhHhHh--cCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC
Q 018246 153 PDNMPLDAGAPLLCAGITVYSPMKY--YGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA 229 (359)
Q Consensus 153 p~~l~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~ 229 (359)
|+++++++++.+.+.+.|||+++.. ...+.+|++|+|+|+ |++|++++++|+++|++++++++++++.+.+ +++|+
T Consensus 157 P~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~-~~~g~ 235 (398)
T TIGR01751 157 PKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYC-RELGA 235 (398)
T ss_pred CCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHcCC
Confidence 9999999999999999999999875 456689999999997 9999999999999999999998898888888 77999
Q ss_pred cEEecCCCH-------------------------HHHHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC
Q 018246 230 DAFLVSSDP-------------------------AKVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 230 ~~v~~~~~~-------------------------~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
+.++|+++. ..+.+++ +++|++|||+|... +..++++++++|+++.+|....
T Consensus 236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~ 314 (398)
T TIGR01751 236 EAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FPTSVFVCRRGGMVVICGGTTG 314 (398)
T ss_pred CEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHhhccCCEEEEEccccC
Confidence 999986532 1122233 26999999999755 8899999999999999987654
Q ss_pred -CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 283 -PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 283 -~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
...++...++.++.++.++......++++++++++++++.+.+ +++++++++++|+.+.++...||+|+++...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 390 (398)
T TIGR01751 315 YNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLVLAP 390 (398)
T ss_pred CCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEEEEeCCC
Confidence 3456667777788899998888888899999999999998655 8999999999999999998889999998764
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=318.73 Aligned_cols=336 Identities=26% Similarity=0.366 Sum_probs=269.8
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
++++..+. .+++.+++++++.|.+.++||+|||.++++|++|++.+.|.+. ..+|.++|||++|+|+++|++++.++
T Consensus 7 ~~~a~~~~--~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~ 83 (373)
T cd08299 7 KCKAAVLW--EPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTTVK 83 (373)
T ss_pred eeEEEEEe--cCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCccCC
Confidence 45655444 5666789999999999999999999999999999999988753 45688999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccc-cccc--------CCC-----CCCCCccceEEEeeCCceEECCCC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY-NSID--------RDG-----TKTYGGYSDLIVVDQHYVLRFPDN 155 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~--------~~g-----~~~~g~~a~~~~~~~~~~~~lp~~ 155 (359)
+||+|++.+ ..+|+.|.+|+.+.++.|....... .+.. ..| ....|+|+||+++|+++++++|++
T Consensus 84 ~Gd~V~~~~-~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~ 162 (373)
T cd08299 84 PGDKVIPLF-VPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAA 162 (373)
T ss_pred CCCEEEECC-CCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCC
Confidence 999997765 5599999999999999998764310 0000 001 113589999999999999999999
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+++++++.+.+++.|||+++.....+++|++|||+|+|++|++++++|+..|+ +|+++++++++++.+ +++|++++++
T Consensus 163 l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~lGa~~~i~ 241 (373)
T cd08299 163 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KELGATECIN 241 (373)
T ss_pred CChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCceEec
Confidence 99999999999999999998777777999999999999999999999999999 899999999999988 8899999888
Q ss_pred CCCH-----HHHHHhc-CCccEEEECCCChhhHHHHHhcc-ccCCEEEEecCCCCC--eeeCHHHHHhcCcEEEEeecCC
Q 018246 235 SSDP-----AKVKAAM-GTMDYIIDTVSAVHSLAPLLGLL-KVNGKLVTVGLPEKP--LEVPIFALVGARRLVGGSNVGG 305 (359)
Q Consensus 235 ~~~~-----~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~--~~~~~~~~~~k~~~i~g~~~~~ 305 (359)
..+. ..+.+++ +++|+++|++|++..+..++..+ +++|+++.+|..... ..++... +.++.++.++....
T Consensus 242 ~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 320 (373)
T cd08299 242 PQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPML-LLTGRTWKGAVFGG 320 (373)
T ss_pred ccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHH-HhcCCeEEEEEecC
Confidence 6542 2233333 37999999999766577766655 679999999976432 3444432 34678888877654
Q ss_pred H---HHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 306 M---KETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 306 ~---~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+ .++.++++.+.++.++ +.+ +.|+++++++||+.+.+++. .|+++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~ 372 (373)
T cd08299 321 WKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLT 372 (373)
T ss_pred CccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEe
Confidence 3 5677788887777653 334 89999999999998887664 587775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=317.79 Aligned_cols=336 Identities=24% Similarity=0.381 Sum_probs=277.0
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+||++++.. ..+.+++++.+.|.+.++||+|||.++++|++|++...|.++ ..+|.++|||++|+|+++|+++++++
T Consensus 2 ~~~a~~~~~--~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08278 2 KTTAAVVRE--PGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLK 78 (365)
T ss_pred ccEEeeecc--CCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCC
Confidence 467776654 334588899999999999999999999999999999988765 44678999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccc-ccccc--------CCC-------CCCCCccceEEEeeCCceEECC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILT-YNSID--------RDG-------TKTYGGYSDLIVVDQHYVLRFP 153 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~~~--------~~g-------~~~~g~~a~~~~~~~~~~~~lp 153 (359)
+||+|++.+. .|+.|.+|..+..++|.+.... +.+.. .++ ....|+|++|+++++++++++|
T Consensus 79 ~Gd~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP 156 (365)
T cd08278 79 PGDHVVLSFA--SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVD 156 (365)
T ss_pred CCCEEEEccc--CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECC
Confidence 9999987653 7999999999999999876422 10100 000 1235899999999999999999
Q ss_pred CCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEE
Q 018246 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAF 232 (359)
Q Consensus 154 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v 232 (359)
+++++++++.+++++.||+.++.....++++++|||+|+|.+|++++++|++.|+ .|+++++++++.+.+ +++|++++
T Consensus 157 ~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~-~~~g~~~~ 235 (365)
T cd08278 157 KDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELA-KELGATHV 235 (365)
T ss_pred CCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcCCcEE
Confidence 9999999999999999999998887777999999999999999999999999999 688899998888777 88999999
Q ss_pred ecCCCHH---HHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCC--CCeeeCHHHHHhcCcEEEEeecCC-
Q 018246 233 LVSSDPA---KVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE--KPLEVPIFALVGARRLVGGSNVGG- 305 (359)
Q Consensus 233 ~~~~~~~---~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~k~~~i~g~~~~~- 305 (359)
+++++.+ .+.+.. .++|+++||+|+...+..++++++++|+++.+|... ....++...++.+++++.++....
T Consensus 236 i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (365)
T cd08278 236 INPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDS 315 (365)
T ss_pred ecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCc
Confidence 8876532 333333 489999999997666899999999999999998753 345677777768899998876432
Q ss_pred --HHHHHHHHHHHHhCCCcc--cEEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 306 --MKETQEMLDFCAKHNIAA--DIELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 306 --~~~~~~~~~~l~~g~i~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.+.+++++++++++++++ .+..++++++++|++.+.++.. -|++++
T Consensus 316 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~ 365 (365)
T cd08278 316 VPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKV-IKPVLR 365 (365)
T ss_pred ChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCc-eEEEEC
Confidence 345788999999999864 3478999999999999988765 488874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=315.87 Aligned_cols=331 Identities=25% Similarity=0.401 Sum_probs=282.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++++.-++ ..+++.+.+.|.+.+++|+||+.++++|++|+....|..+...+|.++|+|++|+|+.+|++++.+++
T Consensus 1 m~a~~~~~~~--~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~ 78 (345)
T cd08260 1 MRAAVYEEFG--EPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRV 78 (345)
T ss_pred CeeEEEecCC--CCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCC
Confidence 6777765432 34888889999999999999999999999999998887665566789999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccccccchh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa~l~~~~ 168 (359)
||+|+. +...+|+.|.+|..|..+.|...... +...+|+|++|+.+++. +++++|++++.++++.+++.+
T Consensus 79 Gd~V~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~ 150 (345)
T cd08260 79 GDRVTV-PFVLGCGTCPYCRAGDSNVCEHQVQP-------GFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRF 150 (345)
T ss_pred CCEEEE-CCCCCCCCCccccCcCcccCCCCccc-------ccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccch
Confidence 999976 45568999999999999999986321 23346999999999974 899999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-HHH---HHHh
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD-PAK---VKAA 244 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~~~---~~~~ 244 (359)
.|||+++.....+.++++|+|+|+|.+|++++++|+..|++|+++++++++.+.+ +++|++.+++++. .+. +..+
T Consensus 151 ~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~~~~~~ 229 (345)
T cd08260 151 ATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA-RELGAVATVNASEVEDVAAAVRDL 229 (345)
T ss_pred HHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHhCCCEEEccccchhHHHHHHHH
Confidence 9999999777777999999999999999999999999999999999999998888 7899999998876 332 3333
Q ss_pred cC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC---eeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCC
Q 018246 245 MG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP---LEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320 (359)
Q Consensus 245 ~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~ 320 (359)
.. ++|++||++|+...+...+++++++|+++.+|..... ..+++..++.+++++.+........++.+++++++++
T Consensus 230 ~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 309 (345)
T cd08260 230 TGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGK 309 (345)
T ss_pred hCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCC
Confidence 33 7999999999755588999999999999999875432 4566666678899999988777888999999999999
Q ss_pred Ccc---cEEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 321 IAA---DIELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 321 i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+.+ ..+.++++++++||+.+.++...||+|++
T Consensus 310 i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 310 LDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred CChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 865 24889999999999999998888998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=318.05 Aligned_cols=303 Identities=21% Similarity=0.247 Sum_probs=251.5
Q ss_pred cceeeeeecCCC---CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCC
Q 018246 11 QKAIGWAARDNT---GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 11 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
||++++..++++ ..+++.+++.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 577777765554 46888889999999999999999999999999999887642 45678999999999999999999
Q ss_pred C-CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 87 K-FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 87 ~-~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
+ |++||+|++.+. .+|+|++|+++|++.++++|++++++++++++
T Consensus 81 ~~~~vGd~V~~~~~----------------------------------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~ 126 (324)
T cd08291 81 AQSLIGKRVAFLAG----------------------------------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSF 126 (324)
T ss_pred ccCCCCCEEEecCC----------------------------------CCCcchheeeecHHHeEECCCCCCHHHHhhhc
Confidence 6 999999975321 13899999999999999999999999999888
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEE--CCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVA--GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK--- 240 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~--G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~--- 240 (359)
+.+.|||.++. ...+ +++.++|+ |+|++|++++|+|+.+|++|+++++++++.+.+ +++|++++++++..+.
T Consensus 127 ~~~~ta~~~~~-~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~i~~~~~~~~~~ 203 (324)
T cd08291 127 VNPLTALGMLE-TARE-EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLL-KKIGAEYVLNSSDPDFLED 203 (324)
T ss_pred ccHHHHHHHHH-hhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEECCCccHHHH
Confidence 88999986553 3333 55566664 569999999999999999999999999998888 7899999998776433
Q ss_pred HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-e-eeCHHHHHhcCcEEEEeecCC------HHHHH
Q 018246 241 VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-L-EVPIFALVGARRLVGGSNVGG------MKETQ 310 (359)
Q Consensus 241 ~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-~~~~~~~~~k~~~i~g~~~~~------~~~~~ 310 (359)
+.+.+. ++|++||++|+.. ....+++++++|+++.+|..... . .++...++.+++++.++.... .++++
T Consensus 204 v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
T cd08291 204 LKELIAKLNATIFFDAVGGGL-TGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVK 282 (324)
T ss_pred HHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHH
Confidence 334443 7999999999877 77789999999999999865432 2 356677788999999877643 34688
Q ss_pred HHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 311 EMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 311 ~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++++++ +++++.+ ++|+|+++++||+.+.++...||+++.
T Consensus 283 ~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 283 KLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred HHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence 8888888 8898877 799999999999999998888999874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=315.50 Aligned_cols=328 Identities=27% Similarity=0.427 Sum_probs=277.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++++.. ....+++.+.+.|.+.++|++||+.++++|++|++...|.++...+|.++|||++|+|+.+|++++.+++
T Consensus 1 m~a~~~~~--~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 78 (334)
T PRK13771 1 MKAVILPG--FKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKP 78 (334)
T ss_pred CeeEEEcC--CCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCC
Confidence 56666553 3335899999999999999999999999999999988887665566788999999999999999988999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|++.++. .|++|.+|..|.++.|.+..+. |...+|+|++|+.++.+.++++|+++++++++.+.+.+.+
T Consensus 79 G~~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~ 150 (334)
T PRK13771 79 GDRVASLLYA-PDGTCEYCRSGEEAYCKNRLGY-------GEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGM 150 (334)
T ss_pred CCEEEECCCC-CCcCChhhcCCCcccCcccccc-------ccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHH
Confidence 9999877554 9999999999999999886432 2335699999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-HHHHHhcCCc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP-AKVKAAMGTM 248 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~ 248 (359)
||+++... .++++++|+|+|+ |.+|++++++|++.|++|+++++++++.+.+ +++ ++++++.++. +.+.+. +++
T Consensus 151 a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~v~~~-~~~ 226 (334)
T PRK13771 151 VYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV-SKY-ADYVIVGSKFSEEVKKI-GGA 226 (334)
T ss_pred HHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHH-HHHhcCchhHHHHHHhc-CCC
Confidence 99999887 6699999999987 9999999999999999999999999998887 777 7777665521 223333 479
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe--eeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL--EVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI- 325 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~- 325 (359)
|+++|++|+.. +..++++++++|+++.+|...... .......+.+++++.+......++++.++++++++.+++.+
T Consensus 227 d~~ld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (334)
T PRK13771 227 DIVIETVGTPT-LEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKPVIG 305 (334)
T ss_pred cEEEEcCChHH-HHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCcceEe
Confidence 99999999876 889999999999999998754321 24444446788999887767788899999999999997655
Q ss_pred EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 326 ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 326 ~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.|+++++++||+.+.++...||+++.+
T Consensus 306 ~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 306 AEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred eeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 7899999999999999888789999864
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=314.20 Aligned_cols=333 Identities=35% Similarity=0.593 Sum_probs=286.4
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+..++ +..+++.+++.|.+.++||+||+.++++|++|+..+.|.++. ...+.++|+|++|+|+++|++++.++
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~ 79 (341)
T cd08297 1 MKAAVVEEFG-EKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLK 79 (341)
T ss_pred CceEEeeccC-CCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCC
Confidence 6788776544 457999999999999999999999999999999988876542 34466889999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+..+....|+.|++|..+..++|...... |....|+|++|++++.+.++++|+++++++++.++..+.
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ 152 (341)
T cd08297 80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNS-------GYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGV 152 (341)
T ss_pred CCCEEEEecCCCCCCCCccccCCCcccCCCcccc-------ccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchH
Confidence 9999988777779999999999999999875322 223468999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
|||+++... .++++++|||+|+ +.+|++++++|+++|++|+++.+++++.+.+ +++|++.++++++.+. +.+..
T Consensus 153 ta~~~~~~~-~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~ 230 (341)
T cd08297 153 TVYKALKKA-GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA-KELGADAFVDFKKSDDVEAVKELT 230 (341)
T ss_pred HHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHcCCcEEEcCCCccHHHHHHHHh
Confidence 999998776 5699999999987 6799999999999999999999999998888 7899999998876433 33443
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+++|+++++.++...+..++++++++|+++.+|.... ..+++...++.++.++.++.....++++.+++++++++++
T Consensus 231 ~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (341)
T cd08297 231 GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVK 310 (341)
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCc
Confidence 3799999987766668999999999999999986554 2366667777899999987776678899999999999998
Q ss_pred ccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 323 ADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 323 ~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.++.|++++++++|+.+.++...||+++++
T Consensus 311 ~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 311 PHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred ceeEEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 7678899999999999999988889999874
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=313.04 Aligned_cols=327 Identities=22% Similarity=0.363 Sum_probs=271.5
Q ss_pred CCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEecc
Q 018246 20 DNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVL 99 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~ 99 (359)
+.++.+++++++.|.+.+++|+|++.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.+++||+|++.+.
T Consensus 8 ~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~ 86 (365)
T cd05279 8 EKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFG 86 (365)
T ss_pred cCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCCEEEEcCC
Confidence 4555689999999999999999999999999999999988654 345789999999999999999999999999987654
Q ss_pred ccCCCCCccccCCCCCCCccccccc-ccccCC-------------CCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 100 VASCQKCESCQQGLENYCPNMILTY-NSIDRD-------------GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 100 ~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~-------------g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
..|++|.+|..+.+++|....+.. .+...+ +....|+|++|+.++++.++++|+++++++++.+.
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~ 165 (365)
T cd05279 87 -PQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIG 165 (365)
T ss_pred -CCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHHHhhHhc
Confidence 489999999999999998875432 111101 11134799999999999999999999999999999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCH--HH--
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDP--AK-- 240 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~-- 240 (359)
+++.+||+++.....+++|++|||+|+|++|++++++|+..|++ |+++++++++.+.+ +++|++++++.++. +.
T Consensus 166 ~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~ 244 (365)
T cd05279 166 CGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKA-KQLGATECINPRDQDKPIVE 244 (365)
T ss_pred cchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCCeecccccccchHHH
Confidence 99999999988887889999999999999999999999999995 77788888898888 89999999887654 22
Q ss_pred -HHHhc-CCccEEEECCCChhhHHHHHhccc-cCCEEEEecCCC--CCeeeCHHHHHhcCcEEEEeec---CCHHHHHHH
Q 018246 241 -VKAAM-GTMDYIIDTVSAVHSLAPLLGLLK-VNGKLVTVGLPE--KPLEVPIFALVGARRLVGGSNV---GGMKETQEM 312 (359)
Q Consensus 241 -~~~~~-~~~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~--~~~~~~~~~~~~k~~~i~g~~~---~~~~~~~~~ 312 (359)
+.++. +++|+++|++|....+..++++++ ++|+++.+|... ....++...+ .++.++.|+.. ....++..+
T Consensus 245 ~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~ 323 (365)
T cd05279 245 VLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKL 323 (365)
T ss_pred HHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHH
Confidence 33333 389999999987666899999999 999999998653 3556777776 67888888744 345778999
Q ss_pred HHHHHhCCCcc---cEEEEccccHHHHHHHHHcCCccEEEEE
Q 018246 313 LDFCAKHNIAA---DIELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 313 ~~~l~~g~i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
+++++++.+++ .+++++++++++||+.+.+++. .|+++
T Consensus 324 ~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~~~~ 364 (365)
T cd05279 324 VALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IRTIL 364 (365)
T ss_pred HHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence 99999999864 3488999999999999887665 46665
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=311.46 Aligned_cols=333 Identities=34% Similarity=0.497 Sum_probs=286.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+..++.+. +.+.+.+.|.+++++|+|++.++++|++|+....|.++ ...+|.++|+|++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~ 79 (338)
T cd08254 1 MKAWRFHKGSKGL-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFK 79 (338)
T ss_pred CeeEEEecCCCCc-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCC
Confidence 5777777655554 67788888999999999999999999999999888765 344577899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+..+.. .|+.|++|..+..+.|....+. |....|+|++|+.++.+.++++|+++++++++.++.++.
T Consensus 80 ~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ 151 (338)
T cd08254 80 VGDRVAVPAVI-PCGACALCRRGRGNLCLNQGMP-------GLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVL 151 (338)
T ss_pred CCCEEEECCCC-CCCCChhhhCcCcccCCCCCcc-------ccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHH
Confidence 99999876654 8999999999999999554322 334569999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHH--Hhc--
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVK--AAM-- 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~--~~~-- 245 (359)
|||+++.....++++++|||.|+|.+|++++++|+..|++|+++++++++.+.+ +++|.+++++..+..... ...
T Consensus 152 ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 152 TPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA-KELGADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred HHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHhCCCEEEcCCCcCHHHHHHHhcC
Confidence 999999888888999999999889999999999999999999999999998888 789998888776532211 222
Q ss_pred CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE
Q 018246 246 GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI 325 (359)
Q Consensus 246 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~ 325 (359)
+++|+++|+++....+..++++|+++|+++.+|.......++...++.++.++.++.......+..++++++++.+++.+
T Consensus 231 ~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~ 310 (338)
T cd08254 231 GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQV 310 (338)
T ss_pred CCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCcccc
Confidence 37999999998776689999999999999999876555566777788899999988877778899999999999998667
Q ss_pred EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 326 ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 326 ~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.+++++++++++.+.+++..||+|+++
T Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 311 ETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred eeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 8899999999999999998889999864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=313.08 Aligned_cols=295 Identities=19% Similarity=0.212 Sum_probs=242.7
Q ss_pred CCccceee---ecC-CCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccc--cccEEEEEeCCCCCCCCCCCEEEE
Q 018246 23 GTFSPFHF---SRR-ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGH--EIVGTVTKVGNNVSKFKEGDKVGV 96 (359)
Q Consensus 23 ~~~~~~~~---~~~-~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~--e~~G~V~~vG~~v~~~~vGdrV~v 96 (359)
+.|++++. +.| ++++|||||||.++++|+.|+....+.......|.++|+ |++|+|+.+|+++++|++||+|+.
T Consensus 25 ~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~ 104 (348)
T PLN03154 25 TDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISG 104 (348)
T ss_pred ccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEe
Confidence 45776663 445 358999999999999999998754432222345788998 889999999999999999999962
Q ss_pred eccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc--eEE--CCCCCCcc-ccccccchhhhh
Q 018246 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY--VLR--FPDNMPLD-AGAPLLCAGITV 171 (359)
Q Consensus 97 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~--~~~--lp~~l~~~-~aa~l~~~~~ta 171 (359)
.|+|+||.+++.+. +++ +|++++++ +++++++++.||
T Consensus 105 --------------------------------------~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA 146 (348)
T PLN03154 105 --------------------------------------ITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTA 146 (348)
T ss_pred --------------------------------------cCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHH
Confidence 16899999999753 544 58999986 688999999999
Q ss_pred hhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH----HHHHHhcC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP----AKVKAAMG 246 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~----~~~~~~~~ 246 (359)
|+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+.+++|+++++++++. +.+.+.++
T Consensus 147 ~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 147 YAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred HHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCC
Confidence 999988777799999999987 9999999999999999999999999998888447999999988642 22334433
Q ss_pred -CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-e-----eeCHHHHHhcCcEEEEeecCCH-----HHHHHHHH
Q 018246 247 -TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-L-----EVPIFALVGARRLVGGSNVGGM-----KETQEMLD 314 (359)
Q Consensus 247 -~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~~~~~~~k~~~i~g~~~~~~-----~~~~~~~~ 314 (359)
++|++||++|+.. +..++++++++|+++.+|...+. . .++...++.|++++.|+....+ +.++++++
T Consensus 227 ~gvD~v~d~vG~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~ 305 (348)
T PLN03154 227 EGIDIYFDNVGGDM-LDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSR 305 (348)
T ss_pred CCcEEEEECCCHHH-HHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHH
Confidence 7999999999864 89999999999999999975432 1 1355677889999999876432 45788999
Q ss_pred HHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 315 FCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 315 ~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
++++|++++.+ .+|+|+++++||+.+.+++..||+||++.++
T Consensus 306 l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~~~ 348 (348)
T PLN03154 306 YYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIRVAKE 348 (348)
T ss_pred HHHCCCccCceecccCHHHHHHHHHHHHcCCCCceEEEEecCC
Confidence 99999999877 5899999999999999999999999998654
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=312.44 Aligned_cols=333 Identities=22% Similarity=0.359 Sum_probs=274.4
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+. +++.+.+.+.+.|.+ .+++|+|||.++++|++|++.+.|.++...+|.++|+|++|+|+++|+++++++
T Consensus 1 ~ka~~~~---~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 77 (347)
T cd05278 1 MKALVYL---GPGKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLK 77 (347)
T ss_pred CceEEEe---cCCceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccC
Confidence 4566654 345588888999999 899999999999999999999988776566688999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccccccch
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa~l~~~ 167 (359)
+||+|+..+ ...|+.|.+|+.|..++|.+..+... .+...+|+|++|++++++ .++++|+++++++++.++++
T Consensus 78 ~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~ 152 (347)
T cd05278 78 PGDRVSVPC-ITFCGRCRFCRRGYHAHCENGLWGWK----LGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDI 152 (347)
T ss_pred CCCEEEecC-CCCCCCChhHhCcCcccCcCCCcccc----cccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcch
Confidence 999997654 44999999999999999988653321 122356999999999987 89999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~ 243 (359)
+.|||+++ ....++++++|||.|+|.+|++++|+|+..|+ +|+++++++++.+.+ +++|++.++++++.+. +..
T Consensus 153 ~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~i~~ 230 (347)
T cd05278 153 LPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLA-KEAGATDIINPKNGDIVEQILE 230 (347)
T ss_pred hhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH-HHhCCcEEEcCCcchHHHHHHH
Confidence 99999998 55667899999999889999999999999997 899998888887766 7899999988776433 333
Q ss_pred hc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeee-CHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCC
Q 018246 244 AM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEV-PIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320 (359)
Q Consensus 244 ~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~ 320 (359)
.. +++|+++|++++...+...+++|+++|+++.+|........ .....+.+++++.++.......++++++++.++.
T Consensus 231 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (347)
T cd05278 231 LTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPELLDLIEEGK 310 (347)
T ss_pred HcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHHHHHHHcCC
Confidence 33 37999999999855589999999999999999865432211 1122346788888776655678999999999999
Q ss_pred Cccc---EEEEccccHHHHHHHHHcCCc-cEEEEEEc
Q 018246 321 IAAD---IELVRMDQINTAMERLAKSDV-KYRFVIDV 353 (359)
Q Consensus 321 i~~~---~~~~~l~~~~~a~~~~~~~~~-~gkvvv~~ 353 (359)
+++. ...+++++++++++.+..++. .+|+|+++
T Consensus 311 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 311 IDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred CChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 9763 478999999999999888776 68998763
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=313.06 Aligned_cols=328 Identities=21% Similarity=0.349 Sum_probs=267.0
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---------CCCCCCcccccccEEEEEe
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---------VTNYPIVPGHEIVGTVTKV 81 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---------~~~~p~~~G~e~~G~V~~v 81 (359)
||++++. +++.+++++++.|++++++|+||+.++++|++|++.+.|... ...+|.++|||++|+|+++
T Consensus 1 mka~~~~---~~~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v 77 (350)
T cd08256 1 MRAVVCH---GPQDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVEL 77 (350)
T ss_pred CeeEEEe---cCCceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEe
Confidence 5666654 455689999999999999999999999999999998877531 1145778999999999999
Q ss_pred CCCCC--CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC-ceEECCCCCCc
Q 018246 82 GNNVS--KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH-YVLRFPDNMPL 158 (359)
Q Consensus 82 G~~v~--~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~-~~~~lp~~l~~ 158 (359)
|++++ +|++||+|+..+.. +|+.|.+|..|.+++|....+. +.. ....|+|++|+.++++ .++++|+++++
T Consensus 78 G~~v~~~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--g~~---~~~~g~~~~~~~~~~~~~~~~lP~~~~~ 151 (350)
T cd08256 78 GEGAEERGVKVGDRVISEQIV-PCWNCRFCNRGQYWMCQKHDLY--GFQ---NNVNGGMAEYMRFPKEAIVHKVPDDIPP 151 (350)
T ss_pred CCCcccCCCCCCCEEEECCcC-CCCCChHHhCcCcccCcCccce--eec---cCCCCcceeeEEcccccceEECCCCCCH
Confidence 99999 89999999766544 8999999999999999754321 110 1246999999999988 58899999999
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
++++.+ .++.|+|+++ ....+++|++|+|.|+|.+|++++++|+++|+ .++++++++++.+.+ +++|++++++++.
T Consensus 152 ~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~ 228 (350)
T cd08256 152 EDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA-RKFGADVVLNPPE 228 (350)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHH-HHcCCcEEecCCC
Confidence 999888 8889999998 55566999999998889999999999999998 577788888887766 8899999888765
Q ss_pred H---HHHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHH-HhcCcEEEEeecCCHHHHHH
Q 018246 238 P---AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFAL-VGARRLVGGSNVGGMKETQE 311 (359)
Q Consensus 238 ~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~k~~~i~g~~~~~~~~~~~ 311 (359)
. +.+.++.. ++|+++|++|+...+..++++++++|+++.+|.......++...+ ..+++++.++.... ..+.+
T Consensus 229 ~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~ 307 (350)
T cd08256 229 VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGP-YCYPI 307 (350)
T ss_pred cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCc-hhHHH
Confidence 3 33444443 699999999975558899999999999999986554444444433 35678888776543 46889
Q ss_pred HHHHHHhCCCcc---cEEEEccccHHHHHHHHHcCCccEEEEE
Q 018246 312 MLDFCAKHNIAA---DIELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 312 ~~~~l~~g~i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
++++++++.+++ ..+.|+++++++||+.+.+++..+|+++
T Consensus 308 ~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 308 AIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred HHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 999999999986 3489999999999999999888899874
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=311.11 Aligned_cols=335 Identities=24% Similarity=0.394 Sum_probs=276.3
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++.+... .+.+++.+++.|.+++++|+|++.++++|++|+..+.|.++ ..+|.++|+|++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (363)
T cd08279 1 MRAAVLHEV--GKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKP 77 (363)
T ss_pred CeEEEEecC--CCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCC
Confidence 567776643 24588889999999999999999999999999999888765 445778999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccc--------cCCC-----CCCCCccceEEEeeCCceEECCCCCC
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSI--------DRDG-----TKTYGGYSDLIVVDQHYVLRFPDNMP 157 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~--------~~~g-----~~~~g~~a~~~~~~~~~~~~lp~~l~ 157 (359)
||+|+..+.. .|+.|.+|++++.+.|.+..+...+- ...| ....|+|++|+.++.+.++++|++++
T Consensus 78 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~ 156 (363)
T cd08279 78 GDHVVLSWIP-ACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIP 156 (363)
T ss_pred CCEEEECCCC-CCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCC
Confidence 9999766544 99999999999999998654311100 0001 12459999999999999999999999
Q ss_pred ccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCC
Q 018246 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSS 236 (359)
Q Consensus 158 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~ 236 (359)
+++++.+++.+.+||.++.....+.++++|||+|+|.+|++++++|+..|++ |+++++++++.+.+ +++|++++++++
T Consensus 157 ~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~-~~~g~~~vv~~~ 235 (363)
T cd08279 157 LDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELA-RRFGATHTVNAS 235 (363)
T ss_pred hHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHhCCeEEeCCC
Confidence 9999999999999999988878889999999998899999999999999995 99999999888877 789999998876
Q ss_pred CHH---HHHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCC--CCeeeCHHHHHhcCcEEEEeec---CCH
Q 018246 237 DPA---KVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE--KPLEVPIFALVGARRLVGGSNV---GGM 306 (359)
Q Consensus 237 ~~~---~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~k~~~i~g~~~---~~~ 306 (359)
..+ .+.++. .++|+++|++++...+...+++++++|+++.+|... ....++...+..++..+.++.. ...
T Consensus 236 ~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (363)
T cd08279 236 EDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPR 315 (363)
T ss_pred CccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcH
Confidence 543 343443 379999999997666899999999999999998654 2456677777667888777644 235
Q ss_pred HHHHHHHHHHHhCCCcc---cEEEEccccHHHHHHHHHcCCccEEEE
Q 018246 307 KETQEMLDFCAKHNIAA---DIELVRMDQINTAMERLAKSDVKYRFV 350 (359)
Q Consensus 307 ~~~~~~~~~l~~g~i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvv 350 (359)
..+++++++++++++++ ..++|+++++++||+.+.+++..+.++
T Consensus 316 ~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 316 RDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred HHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 77999999999999975 337899999999999999888765554
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=308.46 Aligned_cols=323 Identities=45% Similarity=0.798 Sum_probs=278.4
Q ss_pred CCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEecc
Q 018246 20 DNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVL 99 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~ 99 (359)
+..+.+++.+.+.|.+.+++|+|++.++++|++|++.+.|.+....+|.++|+|++|+|+++|++++++++||+|++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~ 86 (330)
T cd08245 7 AAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWL 86 (330)
T ss_pred cCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCEEEEccc
Confidence 34357899999999999999999999999999999998887654556788999999999999999999999999988877
Q ss_pred ccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcC
Q 018246 100 VASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 179 (359)
Q Consensus 100 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~ 179 (359)
..+|+.|.+|..+.++.|.+..+. +....|+|++|+++|.+.++++|+++++++++.+.+.+.|||.++.. .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~ 158 (330)
T cd08245 87 VGSCGRCEYCRRGLENLCQKAVNT-------GYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-A 158 (330)
T ss_pred cCCCCCChhhhCcCcccCcCcccc-------CcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-h
Confidence 779999999999999999986442 22245899999999999999999999999999999999999999977 4
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
.+.++++|||+|+|.+|++++++|+..|++|+++++++++.+.+ +++|++.+++....+......+++|+++++++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 237 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA-RKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA 237 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH
Confidence 56999999999988899999999999999999999999998888 78999888876554333333347999999988766
Q ss_pred hHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEEEccccHHHHHH
Q 018246 260 SLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAME 338 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~~~l~~~~~a~~ 338 (359)
.+..++++++++|+++.++..... ..+....++.++.++.++.......++.+++++.++.+++.++.+++++++++|+
T Consensus 238 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~ 317 (330)
T cd08245 238 AAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKPMIETFPLDQANEAYE 317 (330)
T ss_pred HHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcceEEEEcHHHHHHHHH
Confidence 689999999999999999865432 2333556778899999988887888999999999999987668999999999999
Q ss_pred HHHcCCccEEEEE
Q 018246 339 RLAKSDVKYRFVI 351 (359)
Q Consensus 339 ~~~~~~~~gkvvv 351 (359)
.+.++...||+|+
T Consensus 318 ~~~~~~~~~~~v~ 330 (330)
T cd08245 318 RMEKGDVRFRFVL 330 (330)
T ss_pred HHHcCCCCcceeC
Confidence 9998888888875
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=307.35 Aligned_cols=326 Identities=28% Similarity=0.487 Sum_probs=276.2
Q ss_pred cceeeeeecCC--CCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 11 QKAIGWAARDN--TGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
|+++++...+. +..+++.+.+.|.++++||+||+.++++|++|++...|.++....|.++|||++|+|+++|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 56666654332 2357777888888999999999999999999999998876655668899999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||+|++.+....|++|.+|..+.++.|....+. |...+|+|++|++++.+.++++|+++++.+++.+++++
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~ 153 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT-------GYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAG 153 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCcccc-------ccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhh
Confidence 99999988776678999999999999999987643 22346899999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCc
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 248 (359)
.|||+++ ....++++++|||+|+|++|++++++|++.|++|+++++++++.+.+ +++|++++++.+.. ..+++
T Consensus 154 ~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~-----~~~~v 226 (329)
T cd08298 154 IIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELA-RELGADWAGDSDDL-----PPEPL 226 (329)
T ss_pred HHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHH-HHhCCcEEeccCcc-----CCCcc
Confidence 9999999 66777999999999999999999999999999999999999998888 88999888766532 12379
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEE
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL 327 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~ 327 (359)
|+++++.+....++.++++++++|+++.+|...... .+++.. +.++..+.++.......++.++++++++.+++.++.
T Consensus 227 D~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 305 (329)
T cd08298 227 DAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANLTRQDGEEFLKLAAEIPIKPEVET 305 (329)
T ss_pred cEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEE
Confidence 999998776666899999999999999988543222 233333 457778888877777889999999999999876789
Q ss_pred EccccHHHHHHHHHcCCccEEEEE
Q 018246 328 VRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 328 ~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
|+++++++||+.+.+++..||+|+
T Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 306 YPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred EeHHHHHHHHHHHHcCCCcceeeC
Confidence 999999999999999888899874
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=305.25 Aligned_cols=328 Identities=30% Similarity=0.442 Sum_probs=276.5
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++++.. .+..+.+.+.+.|.+.+++|+|+++++++|++|++.+.|.++....|.++|+|++|+|+++|++++.+++
T Consensus 1 m~a~~~~~--~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~ 78 (332)
T cd08259 1 MKAAILHK--PNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKP 78 (332)
T ss_pred CeEEEEec--CCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCC
Confidence 56666653 3556888899999999999999999999999999999887665566789999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+.. .|+.|.+|..+.++.|.+... .|....|+|++|++++.+.++++|+++++++++.+++++.+
T Consensus 79 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~t 150 (332)
T cd08259 79 GDRVILYYYI-PCGKCEYCLSGEENLCRNRAE-------YGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGT 150 (332)
T ss_pred CCEEEECCCC-CCcCChhhhCCCcccCCCccc-------cccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHH
Confidence 9999877555 799999999999999987521 12345699999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-HHHHHhcCCc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP-AKVKAAMGTM 248 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~ 248 (359)
||++++. ..+.+++++||+|+ |++|++++++++..|++|+++++++++.+.+ ++++.+.+++..+. +.+... .++
T Consensus 151 a~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 227 (332)
T cd08259 151 AVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL-KELGADYVIDGSKFSEDVKKL-GGA 227 (332)
T ss_pred HHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHcCCcEEEecHHHHHHHHhc-cCC
Confidence 9999988 66789999999986 9999999999999999999999998888887 78898887765431 222222 279
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-E
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI-E 326 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~-~ 326 (359)
|++++++|... +..++++++++|+++.+|...... .++......++.++.++......+++++++++.++.+++.+ +
T Consensus 228 d~v~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (332)
T cd08259 228 DVVIELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKPVIDR 306 (332)
T ss_pred CEEEECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCccceeE
Confidence 99999999877 889999999999999998654322 23444444678888887766778899999999999997655 7
Q ss_pred EEccccHHHHHHHHHcCCccEEEEEE
Q 018246 327 LVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 327 ~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.|+++++++||+.+.++...||++++
T Consensus 307 ~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 307 VVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred EEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 99999999999999998888999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=306.97 Aligned_cols=331 Identities=22% Similarity=0.337 Sum_probs=275.4
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++. +++.+++.+++.|+| .++||+|||+++++|++|+..+.|.++...+|.++|||++|+|+++|++++.++
T Consensus 1 m~a~~~~---~~~~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 77 (345)
T cd08286 1 MKALVYH---GPGKISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFK 77 (345)
T ss_pred CceEEEe---cCCceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccC
Confidence 5666654 344588999999986 899999999999999999999988776555678999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccccccch
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa~l~~~ 167 (359)
+||+|++.+.. .|+.|.+|..+.++.|....+. .|...+|+|++|+.++.+ .++++|++++.++++.+++.
T Consensus 78 ~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~ 150 (345)
T cd08286 78 VGDRVLISCIS-SCGTCGYCRKGLYSHCESGGWI------LGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDI 150 (345)
T ss_pred CCCEEEECCcC-CCCCChHHHCcCcccCCCcccc------cccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccch
Confidence 99999776655 7999999999999998865332 123356999999999987 89999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~ 243 (359)
+.|||.++.....+.+|++|||+|+|.+|.+++|+|+.+| .+|+++++++++.+.+ +++|++.+++++..+. +..
T Consensus 151 ~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~i~~ 229 (345)
T cd08286 151 LPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVA-KKLGATHTVNSAKGDAIEQVLE 229 (345)
T ss_pred hHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCceeccccccHHHHHHH
Confidence 9999998766667799999999999999999999999999 6999988888887766 7899999998765432 333
Q ss_pred hcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCC
Q 018246 244 AMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321 (359)
Q Consensus 244 ~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i 321 (359)
... ++|+++|+++....+..++++++++|+++.+|.......+++..++.+++++.+.... ...++.++++++++.+
T Consensus 230 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 308 (345)
T cd08286 230 LTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVD-TNTTPMLLKLVSSGKL 308 (345)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCc-hhhHHHHHHHHHcCCC
Confidence 332 7999999999766688999999999999999876545566777767899999875442 3568889999999998
Q ss_pred cc---cEEEEccccHHHHHHHHHcCC--ccEEEEEEc
Q 018246 322 AA---DIELVRMDQINTAMERLAKSD--VKYRFVIDV 353 (359)
Q Consensus 322 ~~---~~~~~~l~~~~~a~~~~~~~~--~~gkvvv~~ 353 (359)
++ ..+++++++++++|+.+.... ...|++|++
T Consensus 309 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 309 DPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred ChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 64 348899999999999998763 346999863
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=309.53 Aligned_cols=333 Identities=23% Similarity=0.288 Sum_probs=270.4
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++++. +++.+++++++.|.+ +++||+|||+++++|++|++.+.|.++ ...|.++|||++|+|+++|++++.++
T Consensus 1 m~~~~~~---~~~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~ 76 (375)
T cd08282 1 MKAVVYG---GPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLK 76 (375)
T ss_pred CceEEEe---cCCceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCC
Confidence 4555543 455789999999996 799999999999999999999988765 44588999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccccccccccc---CCCCCCCCccceEEEeeCC--ceEECCCCCCcc---cc
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID---RDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLD---AG 161 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~---~a 161 (359)
+||+|++.+ ...|+.|..|+.+..+.|.+..+.+.+.. ..+...+|+|++|+++|.+ .++++|++++++ ++
T Consensus 77 ~Gd~V~~~~-~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~ 155 (375)
T cd08282 77 VGDRVVVPF-NVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDY 155 (375)
T ss_pred CCCEEEEeC-CCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhhe
Confidence 999996654 44799999999999999987533221111 1112246999999999976 899999999998 56
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH-
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA- 239 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~- 239 (359)
+.+...+.|||+++ ....+.+|++|+|.|+|++|++++++|++.|+ +|+++++++++.+.+ +++|+. .+++++.+
T Consensus 156 a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~-~~~g~~-~v~~~~~~~ 232 (375)
T cd08282 156 LMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLA-ESIGAI-PIDFSDGDP 232 (375)
T ss_pred eeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCe-EeccCcccH
Confidence 78888899999998 55666899999999899999999999999998 899999998888777 789984 45665433
Q ss_pred --HHHHhcC-CccEEEECCCChh-----------hHHHHHhccccCCEEEEecCCCC-------------CeeeCHHHHH
Q 018246 240 --KVKAAMG-TMDYIIDTVSAVH-----------SLAPLLGLLKVNGKLVTVGLPEK-------------PLEVPIFALV 292 (359)
Q Consensus 240 --~~~~~~~-~~d~vid~~g~~~-----------~~~~~~~~l~~~G~~v~~g~~~~-------------~~~~~~~~~~ 292 (359)
.+.+++. ++|+++||+|+.. .+..++++++++|+++.+|.... ...++...++
T Consensus 233 ~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (375)
T cd08282 233 VEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLW 312 (375)
T ss_pred HHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHH
Confidence 2333333 7999999999763 47899999999999998875431 1345666777
Q ss_pred hcCcEEEEeecCCHHHHHHHHHHHHhCCCcc---cEEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 293 GARRLVGGSNVGGMKETQEMLDFCAKHNIAA---DIELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 293 ~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.++.++.+........+..++++++++++++ ..+.|+++++++||+.+.++. .+|+|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~ 374 (375)
T cd08282 313 AKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIK 374 (375)
T ss_pred hcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeC
Confidence 8888888776666677899999999999986 348999999999999999888 8999985
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=304.66 Aligned_cols=328 Identities=25% Similarity=0.412 Sum_probs=272.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++.+. .++.+++.+.+.|.+.++||+|+|.++++|+.|+....|.++....|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~a~~~~---~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~ 77 (337)
T cd08261 1 MKALVCE---KPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKV 77 (337)
T ss_pred CeEEEEe---CCCceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCC
Confidence 4566654 3456888899999999999999999999999999998887654455778999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+.. .|+.|..|+.+.+|.|.+... .+....|+|++|++++++ ++++|+++++++++.+ ..+.+
T Consensus 78 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~ 147 (337)
T cd08261 78 GDRVVVDPYI-SCGECYACRKGRPNCCENLQV-------LGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAI 147 (337)
T ss_pred CCEEEECCCC-CCCCChhhhCcCcccCCCCCe-------eeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHH
Confidence 9999765444 899999999999999943211 122345999999999999 9999999999998876 56678
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhcC-
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAMG- 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~- 246 (359)
+++++ ....+.+|++|||+|+|.+|.+++++|+.+|++|+++.+++++.+.+ +++|+++++++++.+ .+.+...
T Consensus 148 a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~-~~~g~~~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 148 GAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFA-RELGADDTINVGDEDVAARLRELTDG 225 (337)
T ss_pred HHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHH-HHhCCCEEecCcccCHHHHHHHHhCC
Confidence 88887 55667999999999889999999999999999999999998888877 889999999887643 3444433
Q ss_pred -CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc--
Q 018246 247 -TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA-- 323 (359)
Q Consensus 247 -~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~-- 323 (359)
++|+++|++++...+..++++|+++|+++.+|.......++...+..+++++.+......+.++.++++++++.+++
T Consensus 226 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~ 305 (337)
T cd08261 226 EGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEA 305 (337)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhh
Confidence 69999999987666889999999999999998665444555556667888888876666677999999999999986
Q ss_pred cE-EEEccccHHHHHHHHHcCC-ccEEEEEEc
Q 018246 324 DI-ELVRMDQINTAMERLAKSD-VKYRFVIDV 353 (359)
Q Consensus 324 ~~-~~~~l~~~~~a~~~~~~~~-~~gkvvv~~ 353 (359)
.. ..+++++++++++.+.+++ ..+|+|+++
T Consensus 306 ~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 306 LITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred heEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 44 8899999999999999884 679999864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=283.85 Aligned_cols=314 Identities=22% Similarity=0.280 Sum_probs=266.3
Q ss_pred CCCcccceeeeeecCCCC-CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCC
Q 018246 6 ETEHPQKAIGWAARDNTG-TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~ 83 (359)
.++...+++++..++.|. .++++..+.|+....+|+||.+|+.|||+|+..++|.|+ .++.|.+-|+|++|+|+.+|+
T Consensus 15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs 94 (354)
T KOG0025|consen 15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS 94 (354)
T ss_pred ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence 355567889998888765 467889999998888899999999999999999999998 567899999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
++++|++||+|+... ...|+|++|.+.+++.++++++.++++.||+
T Consensus 95 ~vkgfk~Gd~VIp~~----------------------------------a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT 140 (354)
T KOG0025|consen 95 NVKGFKPGDWVIPLS----------------------------------ANLGTWRTEAVFSESDLIKVDKDIPLASAAT 140 (354)
T ss_pred CcCccCCCCeEeecC----------------------------------CCCccceeeEeecccceEEcCCcCChhhhhe
Confidence 999999999997443 2459999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCcEEecCCCH-
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGADAFLVSSDP- 238 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~~v~~~~~~- 238 (359)
+..+.+|||.+|.+.-.+++||+|+-.|+ +.+|++.+|+|++.|.+.+-++|+....+++ ++.+|+++|+...+.
T Consensus 141 ~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~ 220 (354)
T KOG0025|consen 141 LSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELR 220 (354)
T ss_pred eccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhc
Confidence 99999999999999988899999888887 9999999999999999988888887655444 467999999854432
Q ss_pred --HHHHH--hcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH-------
Q 018246 239 --AKVKA--AMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM------- 306 (359)
Q Consensus 239 --~~~~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~------- 306 (359)
+..+. ...++.+.++|+|+.. .....+.|..||.++.+|..+. +.+++...+++|++.+.|+++..|
T Consensus 221 ~~~~~k~~~~~~~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~p 299 (354)
T KOG0025|consen 221 DRKMKKFKGDNPRPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSP 299 (354)
T ss_pred chhhhhhhccCCCceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCc
Confidence 11111 1237999999999988 7788999999999999998775 789999999999999999998665
Q ss_pred ----HHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCcc-EEEEEEcC
Q 018246 307 ----KETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVK-YRFVIDVG 354 (359)
Q Consensus 307 ----~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~-gkvvv~~~ 354 (359)
+.+.++.+++..|+|+.+. +..+|++...|++........ ||-++.++
T Consensus 300 e~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 300 EERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred HHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 2267888999999998665 889999999999877664433 56666543
|
|
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=305.32 Aligned_cols=321 Identities=25% Similarity=0.394 Sum_probs=266.4
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++++...+ ...+++.+.+.|+++++||+||+.++++|++|++...+. ....+|.++|||++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (325)
T cd08264 1 MKALVFEKSG-IENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKK 78 (325)
T ss_pred CeeEEeccCC-CCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCC
Confidence 5667665433 456788888888899999999999999999999887642 22234678999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|++.+.. .|+.|.+|..|..+.|.+..+. |....|+|++|++++++.++++|+++++++++.+++++.+
T Consensus 79 Gd~V~~~~~~-~~~~c~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~ 150 (325)
T cd08264 79 GDRVVVYNRV-FDGTCDMCLSGNEMLCRNGGII-------GVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALT 150 (325)
T ss_pred CCEEEECCCc-CCCCChhhcCCCccccCcccee-------eccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHH
Confidence 9999877655 8999999999999999976432 2235689999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-HHHHHhcCCc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP-AKVKAAMGTM 248 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~ 248 (359)
||+++.. ..+++|++|+|+|+ |++|++++++|++.|++|+++++ .+.+ +++|++++++.++. +.+.++.+++
T Consensus 151 a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~~~-~~~g~~~~~~~~~~~~~l~~~~~~~ 224 (325)
T cd08264 151 AYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KDWL-KEFGADEVVDYDEVEEKVKEITKMA 224 (325)
T ss_pred HHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HHHH-HHhCCCeeecchHHHHHHHHHhCCC
Confidence 9999876 66799999999997 99999999999999999988873 3555 78999888876542 3344444789
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCC-CCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEE
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL 327 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~ 327 (359)
|++++++|+.. +..++++|+++|+++.+|... ....++...++.++.++.++..+..++++++++++...++ ...+.
T Consensus 225 d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 302 (325)
T cd08264 225 DVVINSLGSSF-WDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIAKDLKV-KVWKT 302 (325)
T ss_pred CEEEECCCHHH-HHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHHHcCCc-eeEEE
Confidence 99999999864 899999999999999998642 2456677777788899999888888889999999964442 23388
Q ss_pred EccccHHHHHHHHHcCCccEEE
Q 018246 328 VRMDQINTAMERLAKSDVKYRF 349 (359)
Q Consensus 328 ~~l~~~~~a~~~~~~~~~~gkv 349 (359)
|+++++++|++.+.++...+|+
T Consensus 303 ~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 303 FKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred EcHHHHHHHHHHHHcCCCcccc
Confidence 9999999999999987766765
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=306.05 Aligned_cols=329 Identities=20% Similarity=0.319 Sum_probs=264.6
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC---CCCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW---GVTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
||++++. +.++.+++.+++.|.|+++||+||++++++|++|+.++.+.. ....+|.++|||++|+|+++|++++.
T Consensus 1 ~~~~~~~--~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~ 78 (341)
T PRK05396 1 MKALVKL--KAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTG 78 (341)
T ss_pred CceEEEe--cCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCc
Confidence 4666665 344679999999999999999999999999999998776531 12345778999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+..+.. .|+.|.+|+.+.+++|.+..+. +...+|+|++|+.+|.+.++++|+++++++++.+ ..
T Consensus 79 ~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~ 149 (341)
T PRK05396 79 FKVGDRVSGEGHI-VCGHCRNCRAGRRHLCRNTKGV-------GVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DP 149 (341)
T ss_pred CCCCCEEEECCCC-CCCCChhhhCcChhhCCCccee-------eecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hH
Confidence 9999999877555 8999999999999999764221 2335699999999999999999999999888744 45
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~ 243 (359)
+.++++++.. ...+|++|+|.|+|.+|++++++|++.|+ +|+++++++++.+.+ +++|+++++++++.+ .+..
T Consensus 150 ~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~~~~~ 226 (341)
T PRK05396 150 FGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELA-RKMGATRAVNVAKEDLRDVMAE 226 (341)
T ss_pred HHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHhCCcEEecCccccHHHHHHH
Confidence 5555555433 23689999999899999999999999999 688888888887766 889999998876543 3333
Q ss_pred hc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC-HHHHHHHHHHHHhC-
Q 018246 244 AM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG-MKETQEMLDFCAKH- 319 (359)
Q Consensus 244 ~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~-~~~~~~~~~~l~~g- 319 (359)
+. .++|++|||.|+...+...+++++++|+++.+|.......++...++.+++++.++.... ...+..+++++.++
T Consensus 227 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (341)
T PRK05396 227 LGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSGL 306 (341)
T ss_pred hcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcCC
Confidence 43 379999999998777899999999999999998765545555677778888888765322 24466788888888
Q ss_pred CCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 320 NIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 320 ~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
++.+.+ +.++++++++||+.+.++. .||++++++
T Consensus 307 ~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~ 341 (341)
T PRK05396 307 DLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD 341 (341)
T ss_pred ChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence 454444 8899999999999998876 799999764
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=303.44 Aligned_cols=333 Identities=25% Similarity=0.368 Sum_probs=280.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++.+...+.+..+++.+.+.|.+.+++|+|++.++++|++|++.+.|..+ ...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 5667665434556678878888888999999999999999999998887643 234577899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|++.+.. .|+.|.+|..+.++.|.+..+ .|....|+|++|++++.+.++++|+++++++++.+++.+.
T Consensus 81 ~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ 152 (342)
T cd08266 81 PGQRVVIYPGI-SCGRCEYCLAGRENLCAQYGI-------LGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFL 152 (342)
T ss_pred CCCEEEEcccc-ccccchhhccccccccccccc-------cccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHH
Confidence 99999877655 799999999999999987532 2334568999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHH---HHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV---KAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~---~~~~ 245 (359)
+||+++.....+.++++++|+|+ +.+|++++++++..|++|+++++++++.+.+ +.++.+.+++..+.+.. ....
T Consensus 153 ~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 231 (342)
T cd08266 153 TAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KELGADYVIDYRKEDFVREVRELT 231 (342)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCeEEecCChHHHHHHHHHh
Confidence 99999887777789999999987 7999999999999999999999999998887 77888777776654332 2222
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
.++|++++++|... +...+++++++|+++.+|.... ...++....+.+++++.+.......++..++++++++.++
T Consensus 232 ~~~~~d~~i~~~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 310 (342)
T cd08266 232 GKRGVDVVVEHVGAAT-WEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLK 310 (342)
T ss_pred CCCCCcEEEECCcHHH-HHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCcc
Confidence 37999999999876 8899999999999999986653 2345555567789999998888888899999999999987
Q ss_pred ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 323 ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 323 ~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.. +.|+++++++|++.+.++...+|+++++
T Consensus 311 ~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 311 PVIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred cceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 655 8899999999999999887789999863
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=307.44 Aligned_cols=337 Identities=27% Similarity=0.480 Sum_probs=278.4
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCC---
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK--- 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~--- 87 (359)
|+++++... ...+++.+.+.|.+.++||+|++.++++|++|+....|.++. .+|.++|||++|+|+.+|+++++
T Consensus 1 ~~a~~~~~~--~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~ 77 (367)
T cd08263 1 MKAAVLKGP--NPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYG 77 (367)
T ss_pred CeeEEEecC--CCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCc
Confidence 566766543 245788889999999999999999999999999998887653 56789999999999999999988
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccc-ccccc-ccCCC-------------CCCCCccceEEEeeCCceEEC
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMI-LTYNS-IDRDG-------------TKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~-~~~~g-------------~~~~g~~a~~~~~~~~~~~~l 152 (359)
+++||+|+..+.. .|+.|.+|.-+..++|.++. |...+ ..+.| ....|+|++|+.++.+.++++
T Consensus 78 ~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 156 (367)
T cd08263 78 LSVGDRVVGSFIM-PCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPL 156 (367)
T ss_pred CCCCCEEEEcCCC-CCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEEC
Confidence 9999999765433 89999999999999999864 21100 00111 023589999999999999999
Q ss_pred CCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcE
Q 018246 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 153 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
|+++++++++.+++.+.|||+++.....+.++++|||+|+|++|++++++|+..|++ |+++++++++.+.+ +++|++.
T Consensus 157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~-~~~g~~~ 235 (367)
T cd08263 157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKA-KELGATH 235 (367)
T ss_pred CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCce
Confidence 999999999999999999999998888888999999998899999999999999997 98898888888877 7899999
Q ss_pred EecCCCHHH---HHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecC
Q 018246 232 FLVSSDPAK---VKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVG 304 (359)
Q Consensus 232 v~~~~~~~~---~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~ 304 (359)
+++++..+. +.... .++|+++|++++...+..++++++++|+++.+|.... ...++...++.+++++.++...
T Consensus 236 v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (367)
T cd08263 236 TVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA 315 (367)
T ss_pred EecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC
Confidence 998765432 33333 3799999999987348899999999999999986542 3456666666788888886543
Q ss_pred C-HHHHHHHHHHHHhCCCccc---EEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 305 G-MKETQEMLDFCAKHNIAAD---IELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 305 ~-~~~~~~~~~~l~~g~i~~~---~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
. .+.++.++++++++.+++. .+.++++++.++++.+.++...||+||+
T Consensus 316 ~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 316 RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 3 3679999999999999763 3789999999999999998888999974
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=301.10 Aligned_cols=314 Identities=21% Similarity=0.345 Sum_probs=260.3
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++.+. +++++++.+++.|+++++||+||+.++++|++|+....|.++ .|.++|||++|+|+++|++ +++
T Consensus 1 ~~a~~~~---~~~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~ 71 (319)
T cd08242 1 MKALVLD---GGLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELV 71 (319)
T ss_pred CeeEEEe---CCCcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCC
Confidence 4666665 345789999999999999999999999999999999887653 5778999999999999998 679
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCC-CCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
||||...+.. .|+.|.+|..|.++.|.+.... +. ..+|+|++|++++.++++++|++++.++++.+ ....
T Consensus 72 G~~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~ 142 (319)
T cd08242 72 GKRVVGEINI-ACGRCEYCRRGLYTHCPNRTVL-------GIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLA 142 (319)
T ss_pred CCeEEECCCc-CCCCChhhhCcCcccCCCCccc-------CccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHH
Confidence 9999766555 7999999999999999875322 11 23699999999999999999999999888754 4445
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d 249 (359)
++|..+ ....++++++|||+|+|.+|++++|+|+.+|++|+++++++++.+.+ +++|++.+++++.. .-..++|
T Consensus 143 ~~~~~~-~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~-~~~g~~~~~~~~~~----~~~~~~d 216 (319)
T cd08242 143 AALEIL-EQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALA-RRLGVETVLPDEAE----SEGGGFD 216 (319)
T ss_pred HHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHcCCcEEeCcccc----ccCCCCC
Confidence 666655 45556899999999999999999999999999999999999998888 67999888876532 1123799
Q ss_pred EEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCC--cccE-E
Q 018246 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI--AADI-E 326 (359)
Q Consensus 250 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i--~~~~-~ 326 (359)
+++|++|+...+..++++++++|+++..+.......++...++.++.++.++.... +++++++++++++ .+.+ +
T Consensus 217 ~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 293 (319)
T cd08242 217 VVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCGP---FAPALRLLRKGLVDVDPLITA 293 (319)
T ss_pred EEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEeccc---HHHHHHHHHcCCCChhhceEE
Confidence 99999998666889999999999999877655556667777778999998876543 7889999999999 4444 8
Q ss_pred EEccccHHHHHHHHHcCCccEEEEEE
Q 018246 327 LVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 327 ~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.|+++++++||+.+.++. .+|+|+.
T Consensus 294 ~~~l~~~~~a~~~~~~~~-~~k~vi~ 318 (319)
T cd08242 294 VYPLEEALEAFERAAEPG-ALKVLLR 318 (319)
T ss_pred EEeHHHHHHHHHHHhcCC-ceEEEeC
Confidence 999999999999998765 4899886
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=305.35 Aligned_cols=302 Identities=19% Similarity=0.195 Sum_probs=246.4
Q ss_pred cceeeeeecCCCCCccceeeec----CCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccc--cEEEEEeCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSR----RETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEI--VGTVTKVGN 83 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~--~G~V~~vG~ 83 (359)
++++.... .++++|++.+.+. |+|+++||||||+++++|+.|++.+.|.... ..+|.++|++. .|.+..+|+
T Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 8 LKAYVTGF-PKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EecCCCCC-CCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 44555444 2466789988877 8899999999999999999999998885432 34577899754 566666888
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeC-CceEECC-CCCCcc-c
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQ-HYVLRFP-DNMPLD-A 160 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~-~~~~~lp-~~l~~~-~ 160 (359)
.++.|++||+|+. .|+|+||+++|+ ..++++| ++++++ +
T Consensus 87 ~v~~~~vGd~V~~--------------------------------------~g~~aey~~v~~~~~~~~lp~~~~~~~~~ 128 (338)
T cd08295 87 GNPDFKVGDLVWG--------------------------------------FTGWEEYSLIPRGQDLRKIDHTDVPLSYY 128 (338)
T ss_pred CCCCCCCCCEEEe--------------------------------------cCCceeEEEecchhceeecCCCCCCHHHH
Confidence 9999999999962 168999999999 7999995 678887 7
Q ss_pred cccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH-cCCcEEecCCCH
Q 018246 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK-LGADAFLVSSDP 238 (359)
Q Consensus 161 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~-~g~~~v~~~~~~ 238 (359)
++++++++.|||+++.....+++|++|||+|+ |++|++++|+|+.+|++|+++++++++.+.+ ++ +|+++++++++.
T Consensus 129 aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~-~~~lGa~~vi~~~~~ 207 (338)
T cd08295 129 LGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL-KNKLGFDDAFNYKEE 207 (338)
T ss_pred HHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHhcCCceeEEcCCc
Confidence 88999999999999988777899999999987 9999999999999999999999999998888 55 999999986532
Q ss_pred -H---HHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-e-----eeCHHHHHhcCcEEEEeecCCH-
Q 018246 239 -A---KVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-L-----EVPIFALVGARRLVGGSNVGGM- 306 (359)
Q Consensus 239 -~---~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~~~~~~~k~~~i~g~~~~~~- 306 (359)
+ .+.+.. .++|+++|++|+.. +..++++++++|+++.+|..... . ..+...++.+++++.++.....
T Consensus 208 ~~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~ 286 (338)
T cd08295 208 PDLDAALKRYFPNGIDIYFDNVGGKM-LDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYL 286 (338)
T ss_pred ccHHHHHHHhCCCCcEEEEECCCHHH-HHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhH
Confidence 2 233333 38999999999855 89999999999999999864421 1 1344566778888888665433
Q ss_pred ----HHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 307 ----KETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 307 ----~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
..++++++++.++++++.. ..|+++++++|++.+.+++..||+|+++
T Consensus 287 ~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 287 HRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred HHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 2378889999999998766 6799999999999999988889999874
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=301.76 Aligned_cols=327 Identities=26% Similarity=0.386 Sum_probs=274.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++.++ +++.+.+.+.+.|++.+++|+||++++++|++|+....|.++....|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~~~~~~---~~~~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~ 77 (343)
T cd08235 1 MKAAVLH---GPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKV 77 (343)
T ss_pred CeEEEEe---cCCceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCC
Confidence 4666654 3446888888999999999999999999999999998876643445678999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc-----eEECCCCCCcccccccc
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY-----VLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~-----~~~lp~~l~~~~aa~l~ 165 (359)
||+|+..+.. .|++|..|..|+.++|.+..+. |...+|+|++|++++.+. ++++|+++++++++.+
T Consensus 78 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~- 148 (343)
T cd08235 78 GDRVFVAPHV-PCGECHYCLRGNENMCPNYKKF-------GNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV- 148 (343)
T ss_pred CCEEEEccCC-CCCCChHHHCcCcccCCCccee-------ccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-
Confidence 9999876543 7889999999999999876432 233569999999999988 9999999999998766
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHH---H
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAK---V 241 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~ 241 (359)
+.+.+||+++... .+++|++|||+|+|.+|++++++|++.|++ |+++++++++.+.+ +++|.++++++++.+. +
T Consensus 149 ~~~~~a~~~l~~~-~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~-~~~g~~~~~~~~~~~~~~~i 226 (343)
T cd08235 149 EPLACCINAQRKA-GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA-KKLGADYTIDAAEEDLVEKV 226 (343)
T ss_pred hHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCcEEecCCccCHHHHH
Confidence 7888999999766 679999999998899999999999999998 99999999988888 7899999988876533 3
Q ss_pred HHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHH
Q 018246 242 KAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCA 317 (359)
Q Consensus 242 ~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~ 317 (359)
..... ++|+++|++++...+...+++++++|+++.+|.... ...++...+..+++++.++......+++.++++++
T Consensus 227 ~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 306 (343)
T cd08235 227 RELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEALELIA 306 (343)
T ss_pred HHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHHHHHHH
Confidence 33333 699999999976558899999999999999986543 24455566777889998887777788999999999
Q ss_pred hCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 318 KHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 318 ~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++.+++ .. ..++++++.++++.+.+++ .||+|+.
T Consensus 307 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 307 SGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred cCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 999863 33 7899999999999999988 8999873
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=300.29 Aligned_cols=330 Identities=23% Similarity=0.326 Sum_probs=271.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCC-CCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETG-ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++++. ++..+++++++.|.|. ++||+|++.++++|++|++...|.++ ..+|.++|+|++|+|+++|+++++++
T Consensus 1 ~~a~~~~---~~~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (344)
T cd08284 1 MKAVVFK---GPGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLK 76 (344)
T ss_pred CeeEEEe---cCCCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccC
Confidence 4566654 3457899999999985 99999999999999999998888665 34477899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccccccch
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa~l~~~ 167 (359)
+||+|++.+.. .|+.|.+|..+.++.|.+..+.. .. .....+|+|++|++++++ .++++|++++++++++++++
T Consensus 77 ~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~ 152 (344)
T cd08284 77 VGDRVVSPFTI-ACGECFYCRRGQSGRCAKGGLFG--YA-GSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDI 152 (344)
T ss_pred CCCEEEEcccC-CCCCChHHhCcCcccCCCCcccc--cc-ccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCc
Confidence 99999877654 89999999999999998753320 00 011246999999999975 99999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCH---HHHHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~ 243 (359)
+.|||+++.. ..+.+|++|||+|+|.+|++++++|+.+|+ +|+++++++++.+.+ +++|+.. ++.+.. ..+.+
T Consensus 153 ~~ta~~~~~~-~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~l~~ 229 (344)
T cd08284 153 LPTGYFGAKR-AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERA-AALGAEP-INFEDAEPVERVRE 229 (344)
T ss_pred hHHHHhhhHh-cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH-HHhCCeE-EecCCcCHHHHHHH
Confidence 9999999976 456899999999999999999999999997 899998888887776 7899753 444432 23444
Q ss_pred hc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCC
Q 018246 244 AM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320 (359)
Q Consensus 244 ~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~ 320 (359)
+. .++|+++|++++...+...+++++++|+++.+|.... .........+.+++++.+........++++++++.+++
T Consensus 230 ~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (344)
T cd08284 230 ATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGR 309 (344)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHHHHHHHcCC
Confidence 44 3799999999986668999999999999999987652 34455666678888887665556678999999999999
Q ss_pred Ccc---cEEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 321 IAA---DIELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 321 i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++ .++.+++++++++|+.+.+++. +|+|+.
T Consensus 310 i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~ 343 (344)
T cd08284 310 LDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD 343 (344)
T ss_pred CChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence 875 3488999999999999888777 999975
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=301.32 Aligned_cols=317 Identities=23% Similarity=0.323 Sum_probs=256.5
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-----------CCCCCCcccccccEEEE
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-----------VTNYPIVPGHEIVGTVT 79 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-----------~~~~p~~~G~e~~G~V~ 79 (359)
||++++.. + .+++++++.|+++++||+|||.++++|++|++...|... ...+|.++|+|++|+|+
T Consensus 1 m~a~~~~~--~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~ 76 (341)
T cd08262 1 MRAAVFRD--G--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVV 76 (341)
T ss_pred CceEEEeC--C--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEE
Confidence 56666543 2 688889999999999999999999999999999877321 22357789999999999
Q ss_pred EeCCCCCC-CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCc
Q 018246 80 KVGNNVSK-FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPL 158 (359)
Q Consensus 80 ~vG~~v~~-~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~ 158 (359)
++|++++. +++||+|+..+.. .|+.|.+|..|... ..+|+|++|+++|.+.++++|+++++
T Consensus 77 ~vG~~v~~~~~~Gd~V~~~~~~-~~~~~~~~~~~~~~-----------------~~~g~~~~~~~v~~~~~~~lP~~~s~ 138 (341)
T cd08262 77 DYGPGTERKLKVGTRVTSLPLL-LCGQGASCGIGLSP-----------------EAPGGYAEYMLLSEALLLRVPDGLSM 138 (341)
T ss_pred EeCCCCcCCCCCCCEEEecCCc-CCCCChhhhCCCCc-----------------CCCCceeeeEEechHHeEECCCCCCH
Confidence 99999987 9999999877664 89999999432110 23589999999999999999999999
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
++++ ++.++.+||+++ ....+++|++|||+|+|.+|.+++|+|+.+|++ ++++++++++.+.+ +++|++++++++.
T Consensus 139 ~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~i~~~~ 215 (341)
T cd08262 139 EDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALA-LAMGADIVVDPAA 215 (341)
T ss_pred HHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHcCCcEEEcCCC
Confidence 9876 667888999985 556669999999999999999999999999995 66777788888777 8899998998765
Q ss_pred HHH------HHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHH
Q 018246 238 PAK------VKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKET 309 (359)
Q Consensus 238 ~~~------~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~ 309 (359)
.+. +.... .++|+++|++|+...+..++++++++|+++.+|...............+++++.++.....+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (341)
T cd08262 216 DSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEF 295 (341)
T ss_pred cCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHH
Confidence 321 12222 3799999999985448889999999999999987643333333333567888887766666789
Q ss_pred HHHHHHHHhCCCcc--c-EEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 310 QEMLDFCAKHNIAA--D-IELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 310 ~~~~~~l~~g~i~~--~-~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
.+++++++++.+.+ . .+.+++++++++++.+.+++..||+|++
T Consensus 296 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 296 ADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred HHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 99999999999975 2 3889999999999999999888999974
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=307.60 Aligned_cols=317 Identities=24% Similarity=0.400 Sum_probs=260.1
Q ss_pred CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC------C-CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEE
Q 018246 24 TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW------G-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGV 96 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~------~-~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v 96 (359)
.+++++++.|++++++|+||++++++|++|++.+.+.. + ...+|.++|||++|+|+++|++++.|++||+|++
T Consensus 38 ~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 117 (384)
T cd08265 38 ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA 117 (384)
T ss_pred CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence 48999999999999999999999999999998876321 1 1345789999999999999999999999999987
Q ss_pred eccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCC-------Cccccccccchhh
Q 018246 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNM-------PLDAGAPLLCAGI 169 (359)
Q Consensus 97 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l-------~~~~aa~l~~~~~ 169 (359)
.+.. +|+.|..|..|.++.|.++... |...+|+|++|+.++++.++++|+.+ +.+ ++++..++.
T Consensus 118 ~~~~-~~~~~~~c~~~~~~~~~~~~~~-------g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ 188 (384)
T cd08265 118 EEMM-WCGMCRACRSGSPNHCKNLKEL-------GFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTS 188 (384)
T ss_pred CCCC-CCCCChhhhCcCcccCCCccee-------eecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHH
Confidence 7654 9999999999999999976432 33346999999999999999999863 444 566777888
Q ss_pred hhhhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCH------HHH
Q 018246 170 TVYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDP------AKV 241 (359)
Q Consensus 170 ta~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~------~~~ 241 (359)
+||+++... ..+++|++|||+|+|++|++++++|+..|+ +|+++++++++.+.+ +++|+++++++++. +.+
T Consensus 189 ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~v 267 (384)
T cd08265 189 VAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLA-KEMGADYVFNPTKMRDCLSGEKV 267 (384)
T ss_pred HHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEEcccccccccHHHHH
Confidence 999998665 677999999999999999999999999999 799999988887666 88999998887632 234
Q ss_pred HHhcC--CccEEEECCCCh-hhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecC-CHHHHHHHHHHHH
Q 018246 242 KAAMG--TMDYIIDTVSAV-HSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVG-GMKETQEMLDFCA 317 (359)
Q Consensus 242 ~~~~~--~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~~~l~ 317 (359)
.+++. ++|+|+|++|+. ..+..++++|+++|+++.+|.......++...+..+..++.++... ....+++++++++
T Consensus 268 ~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~ 347 (384)
T cd08265 268 MEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMA 347 (384)
T ss_pred HHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHH
Confidence 44443 799999999973 3478999999999999999876544555566667778888876542 2346899999999
Q ss_pred hCCCcc---cEEEEccccHHHHHHHHHcCCccEEEEE
Q 018246 318 KHNIAA---DIELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 318 ~g~i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
++.+++ .++.|+++++++||+.+.++ ..||+|+
T Consensus 348 ~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv 383 (384)
T cd08265 348 SGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI 383 (384)
T ss_pred cCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence 999975 34889999999999996555 4688886
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=303.25 Aligned_cols=323 Identities=20% Similarity=0.310 Sum_probs=261.3
Q ss_pred cceeeeeecCCCCCcccee-eecCCCCCCeEEEEEeeeecchhhhhhhccCCC--------------------CCCCCCc
Q 018246 11 QKAIGWAARDNTGTFSPFH-FSRRETGADDVTIKILFCGICHSDLHCARNEWG--------------------VTNYPIV 69 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~--------------------~~~~p~~ 69 (359)
||++.+...+.+..+.+.+ .+.|.+.+++|+|||.++++|++|++.+.|.++ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 5667666544444566543 467778999999999999999999998877543 2346789
Q ss_pred ccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCce
Q 018246 70 PGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149 (359)
Q Consensus 70 ~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~ 149 (359)
+|||++|+|+++|+++++|++||||++.+.. .|+.|..|.. |..+ |...+|+|++|+.++.+.+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~-----~~~~----------~~~~~g~~~~~~~v~~~~~ 144 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSI-RDPPEDDPAD-----IDYI----------GSERDGGFAEYTVVPAENA 144 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCc-CCCCcccccc-----cccc----------CCCCCccceEEEEecHHHc
Confidence 9999999999999999999999999766443 5666554321 1111 1223599999999999999
Q ss_pred EECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC
Q 018246 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG 228 (359)
Q Consensus 150 ~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g 228 (359)
+++|+++++++++++++++.|||+++ ....+++|++|||+|+ |++|++++++|+++|++|+++++++ +.+.+ +++|
T Consensus 145 ~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~-~~~g 221 (350)
T cd08274 145 YPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAV-RALG 221 (350)
T ss_pred eeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHH-HhcC
Confidence 99999999999999999999999998 4456699999999997 9999999999999999999888765 77777 7899
Q ss_pred CcEEecCCCHHHH-HHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecC
Q 018246 229 ADAFLVSSDPAKV-KAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVG 304 (359)
Q Consensus 229 ~~~v~~~~~~~~~-~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~ 304 (359)
++.+++....... ...+ .++|++||++|+.. +..++++++++|+++.+|..... ..+++..++.+++++.++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (350)
T cd08274 222 ADTVILRDAPLLADAKALGGEPVDVVADVVGGPL-FPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLG 300 (350)
T ss_pred CeEEEeCCCccHHHHHhhCCCCCcEEEecCCHHH-HHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecC
Confidence 8766655432211 2222 37999999999865 89999999999999999865443 567777778899999999888
Q ss_pred CHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 305 GMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 305 ~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
....+.++++++.++++++.+ +.++++++++||+.+.++...||+|+.+
T Consensus 301 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 301 TREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred CHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 888899999999999997655 8899999999999999888789999863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=300.35 Aligned_cols=327 Identities=21% Similarity=0.278 Sum_probs=268.6
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+. .++.+++.+.+.|.| +++||+||+.++++|++|++.+.|.++ ...|.++|||++|+|+++|++++.++
T Consensus 1 m~~~~~~---~~~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (345)
T cd08287 1 MRATVIH---GPGDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP-TRAPAPIGHEFVGVVEEVGSEVTSVK 76 (345)
T ss_pred CceeEEe---cCCceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC-CCCCcccccceEEEEEEeCCCCCccC
Confidence 5666665 344688999999986 899999999999999999999888765 34478999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccc-----
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGA----- 162 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa----- 162 (359)
+||+|++. ....|+.|..|..|..+.|.+..+. +...+|+|++|+++|.+ .++++|++++++.+.
T Consensus 77 ~Gd~V~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~ 148 (345)
T cd08287 77 PGDFVIAP-FAISDGTCPFCRAGFTTSCVHGGFW-------GAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLL 148 (345)
T ss_pred CCCEEEec-cccCCCCChhhhCcCcccCCCCCcc-------cCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhH
Confidence 99999763 3347999999999999999875432 23467999999999975 899999999883221
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHH-
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAK- 240 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~- 240 (359)
++...+.+||+++. ...+++|++|+|.|+|++|++++++|++.|++ ++++++++++.+.+ +++|++++++++..+.
T Consensus 149 ~l~~~~~~a~~~~~-~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~ga~~v~~~~~~~~~ 226 (345)
T cd08287 149 ALSDVMGTGHHAAV-SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALA-REFGATDIVAERGEEAV 226 (345)
T ss_pred hhhcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCceEecCCcccHH
Confidence 23356788999886 44568999999999999999999999999995 88888888777666 8899999998876433
Q ss_pred --HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHH
Q 018246 241 --VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFC 316 (359)
Q Consensus 241 --~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l 316 (359)
+.++.. ++|+++|++|+...+..++++++++|+++.+|.......++....+.+++++.++.......++++++++
T Consensus 227 ~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (345)
T cd08287 227 ARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLDDV 306 (345)
T ss_pred HHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHHHH
Confidence 344443 7999999999876689999999999999999876544556665667899999987777678899999999
Q ss_pred HhCCCcc---cEEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 317 AKHNIAA---DIELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 317 ~~g~i~~---~~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++++++ ..+.++++++++|++.+.++.. .|++|+
T Consensus 307 ~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~ 344 (345)
T cd08287 307 LAGRINPGRVFDLTLPLDEVAEGYRAMDERRA-IKVLLR 344 (345)
T ss_pred HcCCCCHHHhEEeeecHHHHHHHHHHHhCCCc-eEEEeC
Confidence 9999975 3488999999999998887665 499985
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=297.82 Aligned_cols=262 Identities=23% Similarity=0.335 Sum_probs=220.0
Q ss_pred cccccccEEEEEeCCCCC------CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEE
Q 018246 69 VPGHEIVGTVTKVGNNVS------KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLI 142 (359)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~------~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~ 142 (359)
++|||++|+|+++|++|+ ++++||||++.+.. .|+.|.+|+.|.++.|.++.+........+...+|+|+||+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~ 79 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTV-PCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHC 79 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCC-CCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeE
Confidence 589999999999999999 89999999877654 79999999999999998864321100011223569999999
Q ss_pred EeeCC-ceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhH
Q 018246 143 VVDQH-YVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKE 220 (359)
Q Consensus 143 ~~~~~-~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~ 220 (359)
++|++ +++++|+++++++++++.+...|||+++..... .+|++|||+|+|++|++++|+|+++|++ |++++++++|.
T Consensus 80 ~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~ 158 (280)
T TIGR03366 80 HLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR 158 (280)
T ss_pred EecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 99997 699999999999999999999999999987766 6999999999999999999999999995 99998899998
Q ss_pred HHHHHHcCCcEEecCCCH-HHHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCC--CCeeeCHHHHHhcC
Q 018246 221 SEAISKLGADAFLVSSDP-AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE--KPLEVPIFALVGAR 295 (359)
Q Consensus 221 ~~~~~~~g~~~v~~~~~~-~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~k~ 295 (359)
+.+ +++|++++++.++. +.+.+++. ++|++||++|...+++.++++++++|+++.+|... ...+++...++.|+
T Consensus 159 ~~a-~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~ 237 (280)
T TIGR03366 159 ELA-LSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRW 237 (280)
T ss_pred HHH-HHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCC
Confidence 877 89999998886543 23444443 79999999998877899999999999999999653 35678888899999
Q ss_pred cEEEEeecCCHHHHHHHHHHHHhC--CCc--ccE-EEEccccH
Q 018246 296 RLVGGSNVGGMKETQEMLDFCAKH--NIA--ADI-ELVRMDQI 333 (359)
Q Consensus 296 ~~i~g~~~~~~~~~~~~~~~l~~g--~i~--~~~-~~~~l~~~ 333 (359)
+++.|+..++.++++++++++.++ ++. +.+ ++|||+++
T Consensus 238 ~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 238 LTIRGVHNYEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred cEEEecCCCCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 999999988888999999999985 443 333 88999873
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=300.43 Aligned_cols=321 Identities=24% Similarity=0.395 Sum_probs=257.9
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
.+..+++.+.+.|.++++||+||+.++++|++|++.+.|... ....|.++|||++|+|+++|++++.|++||+|++.
T Consensus 25 ~~~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 104 (364)
T PLN02702 25 GVNTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALE 104 (364)
T ss_pred cCCceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEc
Confidence 445688888888889999999999999999999998876321 12347789999999999999999999999999776
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 177 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~ 177 (359)
+.. .|++|..|+.|..+.|+++.+. . ....+|+|++|++++.+.++++|+++++++++.. .+..++++++ .
T Consensus 105 ~~~-~~~~c~~c~~g~~~~c~~~~~~-~-----~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~ 175 (364)
T PLN02702 105 PGI-SCWRCNLCKEGRYNLCPEMKFF-A-----TPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-R 175 (364)
T ss_pred CCC-CCCCCcchhCcCcccCCCcccc-C-----CCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-H
Confidence 654 8999999999999999875322 1 0123699999999999999999999999888752 2344477777 4
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCC--CH---HHHHHh---c-CC
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSS--DP---AKVKAA---M-GT 247 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~--~~---~~~~~~---~-~~ 247 (359)
...+.+|++|||+|+|++|++++++|+..|+ .|+++++++++.+.+ +++|++.++++. .. ..+..+ . ++
T Consensus 176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (364)
T PLN02702 176 RANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVA-KQLGADEIVLVSTNIEDVESEVEEIQKAMGGG 254 (364)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEEecCcccccHHHHHHHHhhhcCCC
Confidence 4556899999999999999999999999999 577788888887766 889998877643 12 223222 2 37
Q ss_pred ccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc--ccE
Q 018246 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA--ADI 325 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~--~~~ 325 (359)
+|+++|++|+...+..++++++++|+++.+|.......++...+..+++++.++... ..+++.++++++++++. +.+
T Consensus 255 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 333 (364)
T PLN02702 255 IDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRY-RNTWPLCLEFLRSGKIDVKPLI 333 (364)
T ss_pred CCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccC-hHHHHHHHHHHHcCCCCchHhe
Confidence 999999999766689999999999999999865444455666777899999987654 46789999999999885 333
Q ss_pred -EEEcc--ccHHHHHHHHHcCCccEEEEEE
Q 018246 326 -ELVRM--DQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 326 -~~~~l--~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+.|++ +++++|++.+.+++..+|+|+.
T Consensus 334 ~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 334 THRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred EEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 77655 7999999999888878999985
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=300.88 Aligned_cols=304 Identities=20% Similarity=0.330 Sum_probs=255.5
Q ss_pred cceeeeeecCCC-CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCC
Q 018246 11 QKAIGWAARDNT-GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
||++++..++++ ..+++.+++.|.++++||+|||.++++|++|++.+.|.++ ....|.++|||++|+|+++|++++.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 567776543333 3478899999999999999999999999999999888764 34457889999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||+|+..+ ..|+|++|+++++..++++|+++++++++.+++.+
T Consensus 81 ~~Gd~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~ 125 (324)
T cd08292 81 QVGQRVAVAP-----------------------------------VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMP 125 (324)
T ss_pred CCCCEEEecc-----------------------------------CCCcceeEEEEchHHeEECCCCCCHHHhhhccccH
Confidence 9999997542 24899999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHh
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAA 244 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~ 244 (359)
.|||+++.. ..+++|++|||+|+ |.+|++++++|+++|++|+++.+++++.+.+ +++|+++++++++.+ .+.++
T Consensus 126 ~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~ 203 (324)
T cd08292 126 LSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL-RALGIGPVVSTEQPGWQDKVREA 203 (324)
T ss_pred HHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HhcCCCEEEcCCCchHHHHHHHH
Confidence 999998865 56689999999986 9999999999999999999999999888888 668999998877643 34444
Q ss_pred cC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC----------HHHHHH
Q 018246 245 MG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG----------MKETQE 311 (359)
Q Consensus 245 ~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~----------~~~~~~ 311 (359)
+. ++|+++|++|+.. +..++++++++|+++.+|.... ...++....+.++.++.++.... ...++.
T Consensus 204 ~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
T cd08292 204 AGGAPISVALDSVGGKL-AGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAE 282 (324)
T ss_pred hCCCCCcEEEECCCChh-HHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHH
Confidence 43 7999999999875 8899999999999999987532 34556666677999998877642 235788
Q ss_pred HHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 312 MLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 312 ~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++++.++.+++.+ +.|+++++.+||+.+.++...+|++++
T Consensus 283 ~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 283 LLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred HHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 99999999998554 789999999999999888777999874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=299.63 Aligned_cols=325 Identities=25% Similarity=0.393 Sum_probs=265.6
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhc-cCCC--CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCAR-NEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~-g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
..+.+++.+.+.|.++++||+|||.++++|++|+..+. |.++ ....|.++|+|++|+|+++|++++.|++||+|++.
T Consensus 5 ~~~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~ 84 (339)
T cd08232 5 AAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVN 84 (339)
T ss_pred cCCceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEc
Confidence 45678899999999999999999999999999988763 3221 12346789999999999999999999999999766
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 177 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~ 177 (359)
+. +.|+.|.+|..|+.+.|.++.+..... . -...+|+|++|++++.+.++++|+++++++++. ..++.+||+++..
T Consensus 85 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~ 160 (339)
T cd08232 85 PS-RPCGTCDYCRAGRPNLCLNMRFLGSAM-R-FPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNR 160 (339)
T ss_pred cC-CcCCCChHHhCcCcccCccccceeecc-c-cCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHh
Confidence 44 489999999999999999864321100 0 012469999999999999999999999998865 5777899999988
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc---CCccEEEE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM---GTMDYIID 253 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid 253 (359)
...+ ++++|||.|+|.+|++++++|+++|+ +|+++++++++.+.+ +++|.++++++++.+ +.... +++|+++|
T Consensus 161 ~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~-~~~g~~~vi~~~~~~-~~~~~~~~~~vd~vld 237 (339)
T cd08232 161 AGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVA-RAMGADETVNLARDP-LAAYAADKGDFDVVFE 237 (339)
T ss_pred cCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHcCCCEEEcCCchh-hhhhhccCCCccEEEE
Confidence 8886 99999999889999999999999999 899999888887755 889999999876543 22222 36999999
Q ss_pred CCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc--cE-EEEcc
Q 018246 254 TVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA--DI-ELVRM 330 (359)
Q Consensus 254 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~--~~-~~~~l 330 (359)
++++...+...+++|+++|+++.+|........+...++.+++++.+.... ...+++++++++++.+++ .+ ++|++
T Consensus 238 ~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 316 (339)
T cd08232 238 ASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRF-DDEFAEAVRLLAAGRIDVRPLITAVFPL 316 (339)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecC-HHHHHHHHHHHHcCCCCchhheeEEecH
Confidence 999765588999999999999999865434444555566788888877643 457889999999998863 23 78999
Q ss_pred ccHHHHHHHHHcCCccEEEEEEc
Q 018246 331 DQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 331 ~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++++|++.+.++...||+|+++
T Consensus 317 ~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 317 EEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HHHHHHHHHHHhCCCceeEEEeC
Confidence 99999999999888789999864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=298.25 Aligned_cols=320 Identities=25% Similarity=0.384 Sum_probs=263.1
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccC-CC--CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE-WG--VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~-~~--~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
++..+++.+.+.|.+.++||+|||.++++|++|++.+.+. .+ ....|.++|+|++|+|+++|++++.+++||+|++.
T Consensus 6 ~~~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 85 (343)
T cd05285 6 GPGDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIE 85 (343)
T ss_pred cCCceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEEc
Confidence 3356888889999999999999999999999999876422 11 12346789999999999999999999999999876
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 177 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~ 177 (359)
+.. +|++|++|+.|..++|+...+. . ....+|+|++|++++.+.++++|+++++++++.+ .++.+|++++ .
T Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~ 156 (343)
T cd05285 86 PGV-PCRTCEFCKSGRYNLCPDMRFA-A-----TPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-R 156 (343)
T ss_pred ccc-CCCCChhHhCcCcccCcCcccc-c-----cccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-H
Confidence 544 9999999999999999865331 1 1124599999999999999999999999998776 5778889887 5
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHH------HHHHhcC--Cc
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPA------KVKAAMG--TM 248 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~------~~~~~~~--~~ 248 (359)
...+++|++|||.|+|.+|++++++|+++|++ |+++++++++.+.+ +++|++++++.++.+ .+.+... ++
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~-~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA-KELGATHTVNVRTEDTPESAEKIAELLGGKGP 235 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHcCCcEEeccccccchhHHHHHHHHhCCCCC
Confidence 56669999999998899999999999999997 99999898888877 789999998876533 2334443 69
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc--cc-E
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA--AD-I 325 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~--~~-~ 325 (359)
|+++||+|+...+...+++++++|+++.+|.......+++..+..+++++.++.... ..+++++++++++.++ +. .
T Consensus 236 d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~ 314 (343)
T cd05285 236 DVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYA-NTYPTAIELLASGKVDVKPLIT 314 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccCh-HHHHHHHHHHHcCCCCchHhEE
Confidence 999999998755889999999999999998655444556667777888888876543 6789999999999875 33 3
Q ss_pred EEEccccHHHHHHHHHcCC-ccEEEEE
Q 018246 326 ELVRMDQINTAMERLAKSD-VKYRFVI 351 (359)
Q Consensus 326 ~~~~l~~~~~a~~~~~~~~-~~gkvvv 351 (359)
+.|+++++.+|++.+.+++ ..+|+++
T Consensus 315 ~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 315 HRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred EEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 7899999999999999874 4599998
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=297.52 Aligned_cols=289 Identities=18% Similarity=0.217 Sum_probs=238.5
Q ss_pred ecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 18 ARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
.+..++.+++.+.+.|+|++|||||||.++++|+.++. |.++....|.++|.|++|+|+++|+ .|++||||+..
T Consensus 12 ~~~~~~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~ 85 (325)
T TIGR02825 12 GYPTDSDFELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS 85 (325)
T ss_pred CCCCCCceEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe
Confidence 33456778888999999999999999999999997653 3333233467999999999999874 59999999631
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEEC----CCCCCcccc-ccccchhhhhh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF----PDNMPLDAG-APLLCAGITVY 172 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~l----p~~l~~~~a-a~l~~~~~ta~ 172 (359)
++|++|++++.+.+.++ |++++++++ +++++++.|||
T Consensus 86 --------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~ 127 (325)
T TIGR02825 86 --------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAY 127 (325)
T ss_pred --------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHH
Confidence 46899999999988887 899999987 68999999999
Q ss_pred hHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-H---HHHHhc-C
Q 018246 173 SPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP-A---KVKAAM-G 246 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-~---~~~~~~-~ 246 (359)
+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++. . .+.... +
T Consensus 128 ~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 128 FGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKLGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEeccccccHHHHHHHhCCC
Confidence 99988888899999999985 9999999999999999999999999998888 88999999987653 1 233333 3
Q ss_pred CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-----Cee--eCHHHHHhcCcEEEEeecCC------HHHHHHHH
Q 018246 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-----PLE--VPIFALVGARRLVGGSNVGG------MKETQEML 313 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~--~~~~~~~~k~~~i~g~~~~~------~~~~~~~~ 313 (359)
++|++||++|+.. +..++++++++|+++.+|.... ..+ .....++.+++++.++.... .+.+++++
T Consensus 207 gvdvv~d~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 285 (325)
T TIGR02825 207 GYDCYFDNVGGEF-SNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELL 285 (325)
T ss_pred CeEEEEECCCHHH-HHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHH
Confidence 7999999999876 7999999999999999986432 111 12345567888888876432 24588899
Q ss_pred HHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 314 DFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 314 ~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+++++|++++.. ..|+++++++|++.+.+++..||+|++
T Consensus 286 ~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 286 KWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred HHHHCCCcccceeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 999999998766 789999999999999999888999974
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=296.33 Aligned_cols=326 Identities=26% Similarity=0.428 Sum_probs=268.6
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++++.- .+.+.+++.+.|+++++||+||+.++++|++|+..+.|.+. ...|.++|+|++|+|+.+|++++.|++
T Consensus 1 ~~a~~~~~---~~~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~ 76 (343)
T cd08236 1 MKALVLTG---PGDLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAV 76 (343)
T ss_pred CeeEEEec---CCceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCC
Confidence 56666653 34688888899999999999999999999999998877653 345678999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+.. .|..|.+|..+.+..|++..+. |...+|+|++|+++|++.++++|+++++++++.+ ..+.+
T Consensus 77 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~t 147 (343)
T cd08236 77 GDRVAVNPLL-PCGKCEYCKKGEYSLCSNYDYI-------GSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAV 147 (343)
T ss_pred CCEEEEcCCC-CCCCChhHHCcChhhCCCcceE-------ecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHH
Confidence 9999776554 7899999999999999886322 3345699999999999999999999999998877 56789
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHH--HHHHhcC-
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPA--KVKAAMG- 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~- 246 (359)
||+++. ...++++++|||+|+|.+|.+++++|+++|++ |+++++++++.+.+ +++|++.++++++.. .+.....
T Consensus 148 a~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~ 225 (343)
T cd08236 148 ALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA-RELGADDTINPKEEDVEKVRELTEG 225 (343)
T ss_pred HHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEecCccccHHHHHHHhCC
Confidence 999987 45568999999998899999999999999996 99999998888877 789998888876543 2333333
Q ss_pred -CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe---eeCHHHHHhcCcEEEEeecCC-----HHHHHHHHHHHH
Q 018246 247 -TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL---EVPIFALVGARRLVGGSNVGG-----MKETQEMLDFCA 317 (359)
Q Consensus 247 -~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~---~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~l~ 317 (359)
++|+++||+|....+..++++|+++|+++.+|...... ..+...++.++.++.++.... .+.++++++++.
T Consensus 226 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T cd08236 226 RGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLA 305 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHH
Confidence 59999999987666889999999999999998654332 223445567888988876644 466888999999
Q ss_pred hCCCc--ccE-EEEccccHHHHHHHHHc-CCccEEEEE
Q 018246 318 KHNIA--ADI-ELVRMDQINTAMERLAK-SDVKYRFVI 351 (359)
Q Consensus 318 ~g~i~--~~~-~~~~l~~~~~a~~~~~~-~~~~gkvvv 351 (359)
+++++ +.. ..+++++++++++.+.+ +...||+|+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 306 SGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred cCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 99985 334 78999999999999998 566688874
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=297.23 Aligned_cols=294 Identities=15% Similarity=0.143 Sum_probs=229.7
Q ss_pred CCCccceeeecCCCC-CCeEEEEEeeeecchhhhhhhc---cCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 22 TGTFSPFHFSRRETG-ADDVTIKILFCGICHSDLHCAR---NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 22 ~~~~~~~~~~~~~~~-~~eVlV~v~~~~i~~~D~~~~~---g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
++.+++.+.+.|+|. ++||||||.++|||+.|+.... |......+|.++|||++|+|+++|+++++|++||||+..
T Consensus 20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 99 (345)
T cd08293 20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF 99 (345)
T ss_pred ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence 355788888999875 9999999999999999964332 111113457789999999999999999999999999631
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccc----cccccchhhhhhh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDA----GAPLLCAGITVYS 173 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~----aa~l~~~~~ta~~ 173 (359)
.++|+||+++|++.++++|+++++++ +++++.++.|||+
T Consensus 100 -------------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~ 142 (345)
T cd08293 100 -------------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALI 142 (345)
T ss_pred -------------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHH
Confidence 15799999999999999999865433 4567788999999
Q ss_pred HhHhcCCCCCC--CEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc-
Q 018246 174 PMKYYGMTEPG--KHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM- 245 (359)
Q Consensus 174 ~l~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~- 245 (359)
++.....+++| ++|||+|+ |++|++++|+|++.|+ +|+++++++++.+.+.+++|+++++++++.+ .+.+++
T Consensus 143 al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~ 222 (345)
T cd08293 143 GIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCP 222 (345)
T ss_pred HHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCC
Confidence 99877776776 99999987 9999999999999999 8999999999988885559999999886543 344444
Q ss_pred CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC---Cee----eC--HHHH-HhcCcEEEEeecCC-----HHHHH
Q 018246 246 GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK---PLE----VP--IFAL-VGARRLVGGSNVGG-----MKETQ 310 (359)
Q Consensus 246 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~----~~--~~~~-~~k~~~i~g~~~~~-----~~~~~ 310 (359)
+++|++||++|+.. +..++++|+++|+++.+|.... ... +. ...+ ..+++++..+.... ...++
T Consensus 223 ~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (345)
T cd08293 223 EGVDVYFDNVGGEI-SDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIA 301 (345)
T ss_pred CCceEEEECCCcHH-HHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHH
Confidence 38999999999976 7899999999999999985321 111 11 1111 23444444332211 13367
Q ss_pred HHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 311 EMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 311 ~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++++.++++++.. ..++++++++||+.+.+++..||+|+++
T Consensus 302 ~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 302 QLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred HHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 788999999998765 5669999999999999988889999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=292.79 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=241.6
Q ss_pred ccceeeeee-c-CCC--CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCC
Q 018246 10 PQKAIGWAA-R-DNT--GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 10 ~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
.|+++.+.- + +.+ ..+++.+.+.|+|+++||+|||.++++|+.|.....+ ....|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 477777766 2 333 6688999999999999999999999999988653211 124578999999999995 45
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC---ceEECCCCCC--c--
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH---YVLRFPDNMP--L-- 158 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~---~~~~lp~~l~--~-- 158 (359)
+.|++||||+.. ++|++|++++.+ .++++|++++ +
T Consensus 76 ~~~~~Gd~V~~~--------------------------------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~ 117 (329)
T cd08294 76 SKFPVGTIVVAS--------------------------------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPP 117 (329)
T ss_pred CCCCCCCEEEee--------------------------------------CCeeeEEEECCccccceEECCccccccCCh
Confidence 679999999631 578999999999 9999999988 2
Q ss_pred -cccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCC
Q 018246 159 -DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSS 236 (359)
Q Consensus 159 -~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~ 236 (359)
..+++++++++|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|++++++++
T Consensus 118 ~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l-~~~Ga~~vi~~~ 196 (329)
T cd08294 118 SLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL-KELGFDAVFNYK 196 (329)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEeCC
Confidence 2234688899999999988777799999999985 9999999999999999999999999998888 789999999887
Q ss_pred CHHH---HHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--C-----eeeCHHHHHhcCcEEEEeecCC
Q 018246 237 DPAK---VKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--P-----LEVPIFALVGARRLVGGSNVGG 305 (359)
Q Consensus 237 ~~~~---~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~-----~~~~~~~~~~k~~~i~g~~~~~ 305 (359)
+.+. +.+.. +++|+++|++|+.. +..++++++++|+++.+|.... . .......++.+++++.++....
T Consensus 197 ~~~~~~~v~~~~~~gvd~vld~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (329)
T cd08294 197 TVSLEEALKEAAPDGIDCYFDNVGGEF-SSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYR 275 (329)
T ss_pred CccHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhh
Confidence 6533 33333 37999999999855 8999999999999999985321 1 1223445677888998876544
Q ss_pred H-----HHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 306 M-----KETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 306 ~-----~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+ ..+++++++++++++++.. ..|+++++++|++.+.+++..||+|+++
T Consensus 276 ~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 276 WQDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 3 2367888999999998755 6799999999999999998889999864
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=289.72 Aligned_cols=327 Identities=21% Similarity=0.338 Sum_probs=259.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC---CCCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW---GVTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
||++++.. ....+++.+.+.|.++++|++||+.++++|++|+..+.+.. .....|.++|+|++|+|+.+|++++.
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~ 78 (341)
T cd05281 1 MKAIVKTK--AGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTR 78 (341)
T ss_pred CcceEEec--CCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCC
Confidence 45665553 33368889999999999999999999999999988765421 12334668999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+..+.. .|+.|.+|..+.+|+|... .+. |....|+|++|++++.+.++++|++++++.+ ++...
T Consensus 79 ~~~Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~ 149 (341)
T cd05281 79 VKVGDYVSAETHI-VCGKCYQCRTGNYHVCQNT--KIL-----GVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEP 149 (341)
T ss_pred CCCCCEEEECCcc-CCCCChHHHCcCcccCccc--ceE-----eccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhH
Confidence 9999999877555 8999999999999999753 222 2235699999999999999999999998554 56666
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHH--HHHh
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK--VKAA 244 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~ 244 (359)
+.++++++. ...++|++|||.|+|.+|++++++|+..|+ +|+++++++++.+.+ +++|++++++++..+. +.++
T Consensus 150 ~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 226 (341)
T cd05281 150 LGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELA-KKMGADVVINPREEDVVEVKSV 226 (341)
T ss_pred HHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCcceeeCcccccHHHHHHH
Confidence 777887765 233789999999889999999999999999 799988888787766 7899988887654332 3333
Q ss_pred cC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHH-HHHhcCcEEEEeecCC-HHHHHHHHHHHHhCC
Q 018246 245 MG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIF-ALVGARRLVGGSNVGG-MKETQEMLDFCAKHN 320 (359)
Q Consensus 245 ~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~k~~~i~g~~~~~-~~~~~~~~~~l~~g~ 320 (359)
.. ++|++||++|+...+..++++|+++|+++.+|.......+++. .++.+++.+.++.... ...+..++++++++.
T Consensus 227 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (341)
T cd05281 227 TDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGK 306 (341)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCC
Confidence 33 7999999999876688999999999999999865443333332 3566788887765322 356788999999999
Q ss_pred Cc--ccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 321 IA--ADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 321 i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++ +.+ ..++++++++||+.+.+++ .||+|++
T Consensus 307 l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~ 340 (341)
T cd05281 307 VDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLY 340 (341)
T ss_pred CChhHheEEEecHHHHHHHHHHHhcCC-CceEEec
Confidence 85 333 7889999999999999988 8999986
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=286.40 Aligned_cols=324 Identities=25% Similarity=0.413 Sum_probs=268.2
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++.+. +++.+.+.+++.|++.++||+||++++++|++|+....|.++. .+|.++|+|++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~---~~~~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~ 76 (334)
T cd08234 1 MKALVYE---GPGELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKV 76 (334)
T ss_pred CeeEEec---CCCceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCC
Confidence 5666654 3446888999999999999999999999999999998887653 36789999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+.. .|++|.+|..+.++.|..... .|...+|+|++|++++.+.++++|+++++.+++.+ ..+.+
T Consensus 77 Gd~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~ 147 (334)
T cd08234 77 GDRVAVDPNI-YCGECFYCRRGRPNLCENLTA-------VGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSC 147 (334)
T ss_pred CCEEEEcCCc-CCCCCccccCcChhhCCCcce-------eccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHH
Confidence 9999876554 699999999999999987631 12234699999999999999999999999998765 77788
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHHHH-Hhc--C
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVK-AAM--G 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~--~ 246 (359)
+++++ ....+++|++|||+|+|.+|.+++++|++.|++ |+++++++++.+.+ +++|++.++++++.+... ... +
T Consensus 148 a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 148 AVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA-KKLGATETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred HHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCeEEecCCCCCHHHHHHhcCC
Confidence 89888 556669999999999899999999999999996 89999999988888 789988888776542211 222 3
Q ss_pred CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc-
Q 018246 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA- 323 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~- 323 (359)
++|+++|+++....+...+++|+++|+++.+|.... ...++...++.+++++.+... ....+++++++++++++++
T Consensus 226 ~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 304 (334)
T cd08234 226 GFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFI-NPYTFPRAIALLESGKIDVK 304 (334)
T ss_pred CCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEecc-CHHHHHHHHHHHHcCCCChh
Confidence 799999999876668899999999999999986542 345555566668888888764 3567899999999999874
Q ss_pred --cEEEEccccHHHHHHHHHcCCccEEEEE
Q 018246 324 --DIELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 324 --~~~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
...++++++++++++.+.+ ...||+|+
T Consensus 305 ~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 305 GLVSHRLPLEEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred hhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence 2378999999999999998 66799986
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=285.36 Aligned_cols=298 Identities=28% Similarity=0.444 Sum_probs=248.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||+++... ..+..+++++++.|.+.+++|+|||.++++|++|++...|.+.....|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 79 (306)
T cd08258 1 MKALVKTG-PGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKV 79 (306)
T ss_pred CeeEEEec-CCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCC
Confidence 35555443 23456899999999999999999999999999999988876543445778999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+..+.|+.|.+|..+..+.|+... .+ |...+|+|++|++++.+.++++|+++++++++ +...+.+
T Consensus 80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~ 151 (306)
T cd08258 80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRK-GI------GTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAV 151 (306)
T ss_pred CCEEEEccCcCCCCCCcchhCcCcccCCCCc-ee------eecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHH
Confidence 9999888777799999999999999998642 11 22356999999999999999999999999876 7777889
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC--ChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST--SPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~--~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
||+++.....++++++|||.|+|.+|.+++++|++.|++|+++.+ ++++.+.+ +++|++++ +++..+. +....
T Consensus 152 a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~l~~~~ 229 (306)
T cd08258 152 AVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVA-KELGADAV-NGGEEDLAELVNEIT 229 (306)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHH-HHhCCccc-CCCcCCHHHHHHHHc
Confidence 999998888889999999988899999999999999999888743 34455555 78999887 7655432 33333
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhC
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKH 319 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g 319 (359)
.++|+++|++|+...+...+++|+++|+++.+|.... ...++...++.|++++.|+.++++++++++++++++|
T Consensus 230 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 306 (306)
T cd08258 230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETALRLLASG 306 (306)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCchHhHHHHHHHHhcC
Confidence 3799999999876668899999999999999988652 4566778888899999999999999999999999875
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=288.43 Aligned_cols=297 Identities=17% Similarity=0.267 Sum_probs=242.9
Q ss_pred CCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEecc
Q 018246 20 DNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVL 99 (359)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~ 99 (359)
+.++.+++.+++.|+++++||+|||+++++|++|+..+.|..+....|.++|+|++|+|+++|++++.|++||+|+....
T Consensus 12 ~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 91 (336)
T TIGR02817 12 TDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGD 91 (336)
T ss_pred CCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCC
Confidence 45677888899999999999999999999999999988876554556788999999999999999999999999974320
Q ss_pred ccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcC
Q 018246 100 VASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 179 (359)
Q Consensus 100 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~ 179 (359)
...+|+|++|++++++.++++|+++++++++.+++++.|||+++....
T Consensus 92 --------------------------------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~ 139 (336)
T TIGR02817 92 --------------------------------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRL 139 (336)
T ss_pred --------------------------------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhc
Confidence 123589999999999999999999999999999999999999997777
Q ss_pred CCCC-----CCEEEEECC-chHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHHHhc-CCcc
Q 018246 180 MTEP-----GKHLGVAGL-GGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVKAAM-GTMD 249 (359)
Q Consensus 180 ~~~~-----g~~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~-~~~d 249 (359)
.+++ |++|||+|+ |++|++++|+|+++ |++|+++++++++.+.+ +++|+++++++... ..+.+.. +++|
T Consensus 140 ~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~vd 218 (336)
T TIGR02817 140 GINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWV-LELGAHHVIDHSKPLKAQLEKLGLEAVS 218 (336)
T ss_pred CCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH-HHcCCCEEEECCCCHHHHHHHhcCCCCC
Confidence 6666 999999986 99999999999998 99999999999998888 88999999885431 2333433 3799
Q ss_pred EEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecC--C----------HHHHHHHHHHHH
Q 018246 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVG--G----------MKETQEMLDFCA 317 (359)
Q Consensus 250 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~--~----------~~~~~~~~~~l~ 317 (359)
+++|++++...+...+++++++|+++.++.. ..++...+..++.++.+.... . ...++++++++.
T Consensus 219 ~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (336)
T TIGR02817 219 YVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVD 295 (336)
T ss_pred EEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHH
Confidence 9999987655588999999999999988532 234444455565666543322 0 134788999999
Q ss_pred hCCCcccE-EEE---ccccHHHHHHHHHcCCccEEEEEE
Q 018246 318 KHNIAADI-ELV---RMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 318 ~g~i~~~~-~~~---~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++.+++.+ +.+ +++++++||+.+.+++..||++++
T Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 296 AGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred CCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 99998654 445 478999999999998888999875
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=286.13 Aligned_cols=320 Identities=21% Similarity=0.308 Sum_probs=256.7
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC---CCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW---GVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
+...+++.+.+.|.++++||+||+.++++|++|+.++.+.. ....+|.++|+|++|+|+++|++++.+++||+|+..
T Consensus 7 ~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 86 (340)
T TIGR00692 7 PGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVE 86 (340)
T ss_pred CCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEEC
Confidence 34457788889999999999999999999999998865541 122346689999999999999999999999999766
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 177 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~ 177 (359)
+.. .|..|..|..+.++.|+...+. |....|+|++|++++++.++++|++++++++ +++..+.+|++++
T Consensus 87 ~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~-- 155 (340)
T TIGR00692 87 THI-VCGKCYACRRGQYHVCQNTKIF-------GVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV-- 155 (340)
T ss_pred CcC-CCCCChhhhCcChhhCcCcceE-------eecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--
Confidence 544 8999999999999999986332 1224689999999999999999999998654 5677788888876
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc--CCccEE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM--GTMDYI 251 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~--~~~d~v 251 (359)
.....+|++|+|.|+|++|.+++++|+.+|++ |+++++++++.+.+ +++|++++++....+ .+.++. .++|++
T Consensus 156 ~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 156 LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELA-KKMGATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 33357899999988899999999999999996 88887777777766 789998888775532 333443 379999
Q ss_pred EECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHH-HHHhcCcEEEEeecC-CHHHHHHHHHHHHhCCCc--ccE-E
Q 018246 252 IDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIF-ALVGARRLVGGSNVG-GMKETQEMLDFCAKHNIA--ADI-E 326 (359)
Q Consensus 252 id~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~k~~~i~g~~~~-~~~~~~~~~~~l~~g~i~--~~~-~ 326 (359)
+|++++...+...+++|+++|+++.+|.......++.. .++.+++++.+.... ....+.++++++++++++ +.+ +
T Consensus 235 ld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 314 (340)
T TIGR00692 235 LEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITH 314 (340)
T ss_pred EECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheee
Confidence 99999776688999999999999999875433333333 556678888765422 234578899999999986 434 8
Q ss_pred EEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 327 LVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 327 ~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.++++++.++++.+.++.. ||+|+.+
T Consensus 315 ~~~l~~~~~a~~~~~~~~~-gkvvv~~ 340 (340)
T TIGR00692 315 KFKFDKFEKGFELMRSGQT-GKVILSL 340 (340)
T ss_pred eeeHHHHHHHHHHHhcCCC-ceEEEeC
Confidence 9999999999999988764 9999864
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=284.72 Aligned_cols=327 Identities=23% Similarity=0.322 Sum_probs=271.5
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..++....+++.+.+.|.++++|++|++.++++|++|++...|.++ ....|.++|||++|+|+++|+.+++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 6788887655556788888888888999999999999999999999887654 234677899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|++.+.. . |+.+.+..|..+. ..|...+|+|++|+.++.+.++++|+++++.+++.+.+.+.
T Consensus 81 ~Gd~V~~~~~~-~------~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ 146 (336)
T cd08276 81 VGDRVVPTFFP-N------WLDGPPTAEDEAS-------ALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGL 146 (336)
T ss_pred CCCEEEEeccc-c------ccccccccccccc-------ccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHH
Confidence 99999866432 2 3344444553321 11333569999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-H---HHHHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD-P---AKVKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~~ 245 (359)
+||+++.....+++|++|+|+|+|++|++++++|++.|++|+++++++++.+.+ +++|.+.+++.+. . ..+.+..
T Consensus 147 ~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 225 (336)
T cd08276 147 TAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERA-KALGADHVINYRTTPDWGEEVLKLT 225 (336)
T ss_pred HHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEcCCcccCHHHHHHHHc
Confidence 999999888788999999999889999999999999999999999999998888 6689998888654 3 2344444
Q ss_pred C--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc
Q 018246 246 G--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 246 ~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
. ++|+++++++... +..++++++++|+++.+|.... ........++.+++++.+........+.++++++.++.+.
T Consensus 226 ~~~~~d~~i~~~~~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 304 (336)
T cd08276 226 GGRGVDHVVEVGGPGT-LAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIR 304 (336)
T ss_pred CCCCCcEEEECCChHH-HHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 3 7999999998765 8899999999999999987543 2345666778899999998887778899999999999887
Q ss_pred ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 323 ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 323 ~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.. +.+++++++++|+.+.+++..+|+++.+
T Consensus 305 ~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 305 PVIDRVFPFEEAKEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred cccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 654 8899999999999999888889999863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.08 Aligned_cols=307 Identities=21% Similarity=0.294 Sum_probs=253.8
Q ss_pred cceeeeeecCCC-CCccceeeecCCCCC-CeEEEEEeeeecchhhhhhhccCCCCC-C----CCCcccccccEEEEEeCC
Q 018246 11 QKAIGWAARDNT-GTFSPFHFSRRETGA-DDVTIKILFCGICHSDLHCARNEWGVT-N----YPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~eVlV~v~~~~i~~~D~~~~~g~~~~~-~----~p~~~G~e~~G~V~~vG~ 83 (359)
|+++.+...+.+ +.+.+.+.+.|.+.+ ++|+||+.++++|++|+..+.|..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 677776654332 247888999998887 999999999999999999988865422 2 567899999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
+++.+++||+|+.... ..|+|++|+.++.+.++++|+++++++++.
T Consensus 81 ~v~~~~~Gd~V~~~~~----------------------------------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~ 126 (341)
T cd08290 81 GVKSLKPGDWVIPLRP----------------------------------GLGTWRTHAVVPADDLIKVPNDVDPEQAAT 126 (341)
T ss_pred CCCCCCCCCEEEecCC----------------------------------CCccchheEeccHHHeEeCCCCCCHHHHHH
Confidence 9999999999975421 248999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh----hhHHHHHHHcCCcEEecCCCH
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP----KKESEAISKLGADAFLVSSDP 238 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~----~~~~~~~~~~g~~~v~~~~~~ 238 (359)
+++.+.|||+++.....+++|++|||+|+ |++|++++++|++.|++|+++.+++ ++.+.+ +++|++++++++..
T Consensus 127 ~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 205 (341)
T cd08290 127 LSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERL-KALGADHVLTEEEL 205 (341)
T ss_pred hhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHH-HhcCCCEEEeCccc
Confidence 99999999999988777799999999986 9999999999999999999988776 566777 78999999887653
Q ss_pred ---H---HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHH---
Q 018246 239 ---A---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMK--- 307 (359)
Q Consensus 239 ---~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~--- 307 (359)
+ .+..... ++|+++|++|+.. +..++++++++|+++.+|.... ...++...++.++.++.+.......
T Consensus 206 ~~~~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (341)
T cd08290 206 RSLLATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRA 284 (341)
T ss_pred ccccHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhc
Confidence 2 2333333 6999999999876 7788999999999999986432 3455665667899999987764321
Q ss_pred -------HHHHHHHHHHhCCCcccE-EEE---ccccHHHHHHHHHcCCccEEEEEEc
Q 018246 308 -------ETQEMLDFCAKHNIAADI-ELV---RMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 308 -------~~~~~~~~l~~g~i~~~~-~~~---~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.+..+++++.++++.+.. ..+ ++++++++++.+.++...||+|+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 285 NPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred CHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence 378889999999997654 567 9999999999999888889999864
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=283.00 Aligned_cols=307 Identities=22% Similarity=0.257 Sum_probs=253.6
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
|+++.+...+.+..+++.+.+.|.+.+++|+|++.++++|++|++...|..+ ....|.++|||++|+|+++|++++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 5677776544455677777777778999999999999999999998877643 2345678999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+.... ...|+|++|++++.+.++++|+++++++++.+++.
T Consensus 81 ~~~Gd~V~~~~~---------------------------------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~ 127 (324)
T cd08244 81 AWLGRRVVAHTG---------------------------------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHD 127 (324)
T ss_pred CCCCCEEEEccC---------------------------------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcch
Confidence 999999975421 12489999999999999999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~ 243 (359)
+.||| ++.....++++++|+|+|+ |.+|++++++|++.|++|+++++++++.+.+ +++|++++++.++.+. +..
T Consensus 128 ~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 205 (324)
T cd08244 128 GRTAL-GLLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RALGADVAVDYTRPDWPDQVRE 205 (324)
T ss_pred HHHHH-HHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEecCCccHHHHHHH
Confidence 99995 4555566799999999985 9999999999999999999999999998888 8899988888765433 333
Q ss_pred hcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC------HHHHHHHHH
Q 018246 244 AMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG------MKETQEMLD 314 (359)
Q Consensus 244 ~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~------~~~~~~~~~ 314 (359)
..+ ++|+++|++|+.. ...++++++++|+++.+|.... ...++....+.+++++.++.... .+.++++++
T Consensus 206 ~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (324)
T cd08244 206 ALGGGGVTVVLDGVGGAI-GRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALA 284 (324)
T ss_pred HcCCCCceEEEECCChHh-HHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHH
Confidence 333 7999999999876 7899999999999999987543 23455556678899988876543 245778899
Q ss_pred HHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 315 FCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 315 ~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.++++.+.+ ..|+++++++||+.+.++...||+++++
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 285 EAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred HHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence 99999987655 8899999999999999988889999863
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=280.17 Aligned_cols=310 Identities=23% Similarity=0.302 Sum_probs=247.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..++++..+++.+++.|.+++++|+|++.++++|++|+..+.|.++. ...|.++|||++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 67888776655557999999999999999999999999999999998887542 335778999999999999 456799
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+..+.. .|...+|+|++|+++|.+.++++|+++++++++.+++.+.
T Consensus 79 ~Gd~V~~~~~~-----------------------------~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ 129 (325)
T cd05280 79 EGDEVLVTGYD-----------------------------LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGF 129 (325)
T ss_pred CCCEEEEcccc-----------------------------cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHH
Confidence 99999754210 1223468999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCC--C-CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH--HHHH
Q 018246 170 TVYSPMKYYGMT--E-PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA--KVKA 243 (359)
Q Consensus 170 ta~~~l~~~~~~--~-~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~~ 243 (359)
|||+++...... . .+++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|++++++.++.. ....
T Consensus 130 ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 208 (325)
T cd05280 130 TAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYL-KSLGASEVLDREDLLDESKKP 208 (325)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEEcchhHHHHHHHH
Confidence 999998765432 4 4579999997 9999999999999999999999999999888 789999988876532 1222
Q ss_pred hc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH------HHHHHHHHH
Q 018246 244 AM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM------KETQEMLDF 315 (359)
Q Consensus 244 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~------~~~~~~~~~ 315 (359)
.. +++|+++|++++.. +..++++++++|+++.+|.... ...++...++.+++++.+...... ..++.+.++
T Consensus 209 ~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (325)
T cd05280 209 LLKARWAGAIDTVGGDV-LANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATE 287 (325)
T ss_pred hcCCCccEEEECCchHH-HHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHH
Confidence 22 37999999999865 9999999999999999987542 234555555578889888655322 223444555
Q ss_pred HHhCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 316 CAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 316 l~~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+..+...+...+|++++++++++.+.+++..||+|+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~ 325 (325)
T cd05280 288 WKPDLLEIVVREISLEELPEAIDRLLAGKHRGRTVVKI 325 (325)
T ss_pred HhcCCccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence 55664444558999999999999999998889999864
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=281.88 Aligned_cols=310 Identities=21% Similarity=0.304 Sum_probs=259.2
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
|||++++...+....+++.+.+.|.+.++||+|||.++++|+.|+....|..+ ....|.++|+|++|+|+++|++++.+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 58898888665555677777777888999999999999999999998877653 23345689999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||+|+... .+|+|++|++++.+.++++|+++++++++.+.+++
T Consensus 81 ~~Gd~V~~~~-----------------------------------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~ 125 (334)
T PTZ00354 81 KEGDRVMALL-----------------------------------PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAF 125 (334)
T ss_pred CCCCEEEEec-----------------------------------CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHH
Confidence 9999997432 24899999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH----HHHH
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA----KVKA 243 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~ 243 (359)
.+||+++.....+++|++|+|+|+ |.+|++++++|++.|++++++.+++++.+.+ +++|++++++....+ .+.+
T Consensus 126 ~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~ 204 (334)
T PTZ00354 126 LTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC-KKLAAIILIRYPDEEGFAPKVKK 204 (334)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCChhHHHHHHHH
Confidence 999999988777799999999985 9999999999999999988899999998888 789999888876543 2333
Q ss_pred hc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-Cee-eCHHHHHhcCcEEEEeecCCH----------HHH
Q 018246 244 AM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLE-VPIFALVGARRLVGGSNVGGM----------KET 309 (359)
Q Consensus 244 ~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~-~~~~~~~~k~~~i~g~~~~~~----------~~~ 309 (359)
.. .++|++++++++.. +..++++++++|+++.+|...+ ... ++...++.++.++.++..... ..+
T Consensus 205 ~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (334)
T PTZ00354 205 LTGEKGVNLVLDCVGGSY-LSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFE 283 (334)
T ss_pred HhCCCCceEEEECCchHH-HHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHH
Confidence 33 37999999998765 8899999999999999986543 223 666667778888888765432 224
Q ss_pred HHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 310 QEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 310 ~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+++++++.++.+.+.+ +.+++++++++++.+.+++..||+|+.+.++
T Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~~ 331 (334)
T PTZ00354 284 REVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEP 331 (334)
T ss_pred HHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence 6788899999987655 8899999999999999887779999988765
|
|
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=277.54 Aligned_cols=296 Identities=22% Similarity=0.310 Sum_probs=247.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++.+...+ +..+++.+.+.|.++++||+||+.++++|++|++...+. ..+.++|+|++|+|+++|++++.|++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~ 75 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAV 75 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence 4666665432 667888889999999999999999999999999876521 23568999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+... .+|+|++|+.++.+.++++|+++++++++++++.+.|
T Consensus 76 Gd~V~~~~-----------------------------------~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~t 120 (305)
T cd08270 76 GARVVGLG-----------------------------------AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVT 120 (305)
T ss_pred CCEEEEec-----------------------------------CCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHH
Confidence 99997432 2489999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d 249 (359)
||+++...... +|++|+|+|+ |++|++++++|++.|++|+++++++++.+.+ +++|++.+++.... + ..+++|
T Consensus 121 a~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~--~--~~~~~d 194 (305)
T cd08270 121 ALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGL-RELGAAEVVVGGSE--L--SGAPVD 194 (305)
T ss_pred HHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecccc--c--cCCCce
Confidence 99999888875 5999999987 9999999999999999999999999998888 67998765543221 1 114799
Q ss_pred EEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHh--cCcEEEEeecCC----HHHHHHHHHHHHhCCCc
Q 018246 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVG--ARRLVGGSNVGG----MKETQEMLDFCAKHNIA 322 (359)
Q Consensus 250 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~--k~~~i~g~~~~~----~~~~~~~~~~l~~g~i~ 322 (359)
+++|++|+.. +..++++++++|+++.+|.... ...++...+.. ++.++.++.... ...++.+++++.+++++
T Consensus 195 ~vl~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 273 (305)
T cd08270 195 LVVDSVGGPQ-LARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLD 273 (305)
T ss_pred EEEECCCcHH-HHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCcc
Confidence 9999999875 8999999999999999986542 34455555554 688888877653 35688899999999998
Q ss_pred ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 323 ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 323 ~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.+ +.++++++++|++.+.++...||+|+.+
T Consensus 274 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 274 PRIGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred ceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 765 7999999999999999888889999864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=282.75 Aligned_cols=306 Identities=22% Similarity=0.294 Sum_probs=251.1
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+|+++.+..++.+..+++.+++.|.++++||+||+.++++|++|++...|.++...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 47888888767777899999999999999999999999999999999888766555688899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+... ...|+|++|+.++.+.++++|+++++++++.+++.+.
T Consensus 81 ~Gd~V~~~~----------------------------------~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ 126 (327)
T PRK10754 81 VGDRVVYAQ----------------------------------SALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGL 126 (327)
T ss_pred CCCEEEECC----------------------------------CCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHH
Confidence 999996321 1248899999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~ 245 (359)
+||.++.....+++|++|+|+| +|.+|++++++|+.+|++|+++++++++.+.+ +++|++++++.+..+ .+.+.+
T Consensus 127 ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 205 (327)
T PRK10754 127 TVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRA-KKAGAWQVINYREENIVERVKEIT 205 (327)
T ss_pred HHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEEcCCCCcHHHHHHHHc
Confidence 9999988888889999999997 59999999999999999999999999998888 789998888776532 334444
Q ss_pred C--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcE------EEEeecCCHH----HHHHH
Q 018246 246 G--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRL------VGGSNVGGMK----ETQEM 312 (359)
Q Consensus 246 ~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~------i~g~~~~~~~----~~~~~ 312 (359)
. ++|+++||+++.. ....+++++++|+++.+|..... ..++...+..++.. +.+. ..+.. .+..+
T Consensus 206 ~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 283 (327)
T PRK10754 206 GGKKVRVVYDSVGKDT-WEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGY-ITTREELTEASNEL 283 (327)
T ss_pred CCCCeEEEEECCcHHH-HHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeecc-cCCHHHHHHHHHHH
Confidence 3 7999999999865 88899999999999999865432 22333333222211 1111 11222 24568
Q ss_pred HHHHHhCCCccc---EEEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 313 LDFCAKHNIAAD---IELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 313 ~~~l~~g~i~~~---~~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++++.++++++. ++.|++++++++++.+.++...+|+|+.
T Consensus 284 ~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 326 (327)
T PRK10754 284 FSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI 326 (327)
T ss_pred HHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence 899999999753 3899999999999999988888999985
|
|
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=276.21 Aligned_cols=309 Identities=24% Similarity=0.322 Sum_probs=248.1
Q ss_pred ceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|++++...+.+..+++++++.|.+++++|+||++++++|++|++.+.|.++. ...|.++|||++|+|+. ++++.|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 3445554455557889999999999999999999999999999988887532 34578899999999998 56778999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|++.+.. .|...+|+|++|+.+|.+.++++|+++++++++.+++.+.+
T Consensus 79 Gd~V~~~~~~-----------------------------~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~t 129 (323)
T TIGR02823 79 GDEVIVTGYG-----------------------------LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFT 129 (323)
T ss_pred CCEEEEccCC-----------------------------CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHH
Confidence 9999754310 01224589999999999999999999999999999999999
Q ss_pred hhhHhHhcCC--CCCCC-EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH-HHHhc
Q 018246 171 VYSPMKYYGM--TEPGK-HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK-VKAAM 245 (359)
Q Consensus 171 a~~~l~~~~~--~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~ 245 (359)
|+.++..... +.+|+ +|+|+|+ |.+|++++++|+++|++|+++++++++.+.+ +++|++++++.++.+. +....
T Consensus 130 a~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 208 (323)
T TIGR02823 130 AALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYL-KELGASEVIDREDLSPPGKPLE 208 (323)
T ss_pred HHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HhcCCcEEEccccHHHHHHHhc
Confidence 9888755432 58898 9999997 9999999999999999999998888888777 8899998888765432 33333
Q ss_pred -CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC--H----HHHHHHHHHHH
Q 018246 246 -GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG--M----KETQEMLDFCA 317 (359)
Q Consensus 246 -~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~--~----~~~~~~~~~l~ 317 (359)
+++|+++|++|+.. +..++++++++|+++.+|.... ....+...++.+++++.+..... . ..+..+.+++.
T Consensus 209 ~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (323)
T TIGR02823 209 KERWAGAVDTVGGHT-LANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLK 287 (323)
T ss_pred CCCceEEEECccHHH-HHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhh
Confidence 36999999999875 8899999999999999987643 33344455667899998865431 1 12455666777
Q ss_pred hCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 318 KHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 318 ~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.+++..+.++++++++||+.+.+++..||+|+.+
T Consensus 288 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~k~vv~~ 323 (323)
T TIGR02823 288 PRNLESITREITLEELPEALEQILAGQHRGRTVVDV 323 (323)
T ss_pred cCCCcCceeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence 888776668999999999999999998889999864
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=277.61 Aligned_cols=297 Identities=23% Similarity=0.293 Sum_probs=232.7
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCC----CCCCcccccc---cEEEEEeC-CCCCCCCCCC
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVT----NYPIVPGHEI---VGTVTKVG-NNVSKFKEGD 92 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~----~~p~~~G~e~---~G~V~~vG-~~v~~~~vGd 92 (359)
.+.....++.+.|.|.+++++|++.++++|+.|+.+++|.+... .+|.+++.++ +|.+...| ..+..+..||
T Consensus 16 ~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~ 95 (347)
T KOG1198|consen 16 GGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGD 95 (347)
T ss_pred CcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeee
Confidence 33444567789999999999999999999999999999987633 3564444444 44455555 3334466666
Q ss_pred EEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhh
Q 018246 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 172 (359)
Q Consensus 93 rV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~ 172 (359)
++.. ....|+|+||.++|+..++++|++++++++|+++.++.|||
T Consensus 96 ~~~~-----------------------------------~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~ 140 (347)
T KOG1198|consen 96 AVVA-----------------------------------FLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTAL 140 (347)
T ss_pred EEee-----------------------------------ccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHH
Confidence 6542 23569999999999999999999999999999999999999
Q ss_pred hHhHhcC------CCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc
Q 018246 173 SPMKYYG------MTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM 245 (359)
Q Consensus 173 ~~l~~~~------~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 245 (359)
.++.... .+++|++|||+|+ |++|++++|+|++.|+..+++.++++..+.+ +++|+++++|+++++.+++..
T Consensus 141 ~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~-k~lGAd~vvdy~~~~~~e~~k 219 (347)
T KOG1198|consen 141 SALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELV-KKLGADEVVDYKDENVVELIK 219 (347)
T ss_pred HHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHH-HHcCCcEeecCCCHHHHHHHH
Confidence 9999999 7899999999975 9999999999999998777777888888888 999999999999987766654
Q ss_pred C----CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC---CeeeC-HHH-H--------HhcCc-EEEEeecCCHH
Q 018246 246 G----TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK---PLEVP-IFA-L--------VGARR-LVGGSNVGGMK 307 (359)
Q Consensus 246 ~----~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~~~-~~~-~--------~~k~~-~i~g~~~~~~~ 307 (359)
. +||+|+||+|+.. ......++..+|+...++...+ ..... ... + ..++. -...+.....+
T Consensus 220 k~~~~~~DvVlD~vg~~~-~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (347)
T KOG1198|consen 220 KYTGKGVDVVLDCVGGST-LTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAE 298 (347)
T ss_pred hhcCCCccEEEECCCCCc-cccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHH
Confidence 3 8999999999975 7788888888886554443321 11111 000 0 01111 12233345557
Q ss_pred HHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 308 ETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 308 ~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
.++.+.+++++++|++.+ +.||++++.+||+.+.++..+||+++.++
T Consensus 299 ~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 299 YLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred HHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence 799999999999999988 89999999999999999999999999875
|
|
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=276.14 Aligned_cols=292 Identities=21% Similarity=0.297 Sum_probs=248.9
Q ss_pred CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccC
Q 018246 24 TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVAS 102 (359)
Q Consensus 24 ~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~ 102 (359)
.+++.+.+.|.+.+++|+|||+++++|+.|...+.|.+. ....|.++|+|++|+|+++|++++.+++||+|+..+
T Consensus 13 ~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~---- 88 (323)
T cd05282 13 VLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG---- 88 (323)
T ss_pred eEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC----
Confidence 567777888889999999999999999999998877654 234577899999999999999999999999997543
Q ss_pred CCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCC
Q 018246 103 CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTE 182 (359)
Q Consensus 103 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~ 182 (359)
.+|+|++|+.++.+.++++|+++++++++.+++...+||+++.....+.
T Consensus 89 -------------------------------~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~ 137 (323)
T cd05282 89 -------------------------------GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLP 137 (323)
T ss_pred -------------------------------CCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCC
Confidence 1389999999999999999999999999999999999999998888789
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc--CCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM--GTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~vid~~g 256 (359)
+|++|||+|+ |.+|++++++|+++|++|+++.+++++.+.+ +++|+++++++++.+. +.+.+ .++|+++|++|
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g 216 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL-KALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVG 216 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH-HhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCC
Confidence 9999999986 8999999999999999999999999998888 8899999998876433 33333 27999999999
Q ss_pred ChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH----------HHHHHHHHHHHhCCCcccE
Q 018246 257 AVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM----------KETQEMLDFCAKHNIAADI 325 (359)
Q Consensus 257 ~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~----------~~~~~~~~~l~~g~i~~~~ 325 (359)
+.. ....+++++++|+++.+|.... ...++...+..++.++.+.....+ ..++++++++.++++.+..
T Consensus 217 ~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 295 (323)
T cd05282 217 GES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPV 295 (323)
T ss_pred CHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 977 6788999999999999987544 345566665558999888776543 2477888999999987654
Q ss_pred -EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 326 -ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 326 -~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+.|+++++++||+.+.++...||+|++
T Consensus 296 ~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 296 GAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred cceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 889999999999999988878999863
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=273.61 Aligned_cols=301 Identities=21% Similarity=0.312 Sum_probs=250.7
Q ss_pred cceeeeeecCC--CCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDN--TGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
|+++.+.-+++ ++.+++++++.|.+.++||+|||.++++|++|++...|.++ ...+|.++|+|++|+|+.+|++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~~ 81 (329)
T cd08250 2 FRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD 81 (329)
T ss_pred ceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCCC
Confidence 78888777666 67789999999999999999999999999999998887654 2456889999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+... .|+|++|++++.+.++++|+. +.+++.++++
T Consensus 82 ~~~Gd~V~~~~------------------------------------~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~ 123 (329)
T cd08250 82 FKVGDAVATMS------------------------------------FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVS 123 (329)
T ss_pred CCCCCEEEEec------------------------------------CcceeEEEEechHHeEECCCC--cchhhhcccH
Confidence 99999997432 389999999999999999997 4567889999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~ 243 (359)
+.|||+++.....+.+|++|+|+|+ |.+|++++++|+..|++|+++++++++.+.+ +++|++.+++.++.+ .+..
T Consensus 124 ~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~ 202 (329)
T cd08250 124 GLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL-KSLGCDRPINYKTEDLGEVLKK 202 (329)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH-HHcCCceEEeCCCccHHHHHHH
Confidence 9999999988878899999999985 9999999999999999999999999888888 789998888765532 2322
Q ss_pred hc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-----------eeeCHHHHHhcCcEEEEeecCCH-----
Q 018246 244 AM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-----------LEVPIFALVGARRLVGGSNVGGM----- 306 (359)
Q Consensus 244 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----------~~~~~~~~~~k~~~i~g~~~~~~----- 306 (359)
.. +++|+++|++|+.. +...+++++++|+++.+|..... ..++ ...+.++.++.++.....
T Consensus 203 ~~~~~vd~v~~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 280 (329)
T cd08250 203 EYPKGVDVVYESVGGEM-FDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIP 280 (329)
T ss_pred hcCCCCeEEEECCcHHH-HHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHH
Confidence 22 37999999999855 89999999999999999865421 1222 234678889988776432
Q ss_pred HHHHHHHHHHHhCCCcccE---EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 307 KETQEMLDFCAKHNIAADI---ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 307 ~~~~~~~~~l~~g~i~~~~---~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
..+..+++++.++.+++.. +.++++++++||+.+.++...||+|++
T Consensus 281 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 281 QHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred HHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 3478889999999987632 568999999999999988877899874
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=273.53 Aligned_cols=310 Identities=22% Similarity=0.306 Sum_probs=240.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC-CCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW-GVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+.-.+.+..+.+.+++.|.+.++||+||+.++++|++|.....+.. ....+|.++|||++|+|++.| ++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 567777655444568888999999999999999999999999987664321 123457889999999999954 57799
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|++.+.. .|...+|+|++|+++|++.++++|+++++++++.+++.+.
T Consensus 79 ~Gd~V~~~~~~-----------------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ 129 (326)
T cd08289 79 PGDEVIVTSYD-----------------------------LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGF 129 (326)
T ss_pred CCCEEEEcccc-----------------------------cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHH
Confidence 99999754310 1223469999999999999999999999999999999999
Q ss_pred hhhhHhHhcC---CCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHHH
Q 018246 170 TVYSPMKYYG---MTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVKA 243 (359)
Q Consensus 170 ta~~~l~~~~---~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~ 243 (359)
|||.++.... ...++++|||+|+ |.+|++++++|+++|++|+++++++++.+.+ +++|++++++.++. +.+..
T Consensus 130 ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~ 208 (326)
T cd08289 130 TAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL-KKLGAKEVIPREELQEESIKP 208 (326)
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HHcCCCEEEcchhHHHHHHHh
Confidence 9998875432 2345789999987 9999999999999999999999999999888 88999998887653 22333
Q ss_pred hc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC--HHHHHHHHHHHHh-
Q 018246 244 AM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG--MKETQEMLDFCAK- 318 (359)
Q Consensus 244 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~--~~~~~~~~~~l~~- 318 (359)
+. +++|+++|++|+.. +...+++++++|+++.+|.... ..+++...++.+++++.+..... ......+++.+.+
T Consensus 209 ~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (326)
T cd08289 209 LEKQRWAGAVDPVGGKT-LAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATD 287 (326)
T ss_pred hccCCcCEEEECCcHHH-HHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhh
Confidence 33 37999999999865 8999999999999999987543 33444566668899998875321 1223334333322
Q ss_pred ---CCCc-ccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 319 ---HNIA-ADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 319 ---g~i~-~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
..+. ...++|+++++++||+.+.+++..||+|+++
T Consensus 288 ~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 288 LKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred cCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 2222 2358999999999999999998889999864
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=271.59 Aligned_cols=308 Identities=22% Similarity=0.299 Sum_probs=248.2
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++.+...+.+..+++.+.+.|.+.++||+||++++++|++|+....|.++....|.++|||++|+|+++|+ ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 4666665433344566777777788999999999999999999999888765555678899999999999995 57999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..... .+...+|+|++|+.++.+.++++|+++++++++.+++++.|
T Consensus 79 Gd~V~~~~~~-----------------------------~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~t 129 (320)
T cd08243 79 GQRVATAMGG-----------------------------MGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYT 129 (320)
T ss_pred CCEEEEecCC-----------------------------CCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHH
Confidence 9999754310 01124589999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC--HHHHHHhcCC
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD--PAKVKAAMGT 247 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~ 247 (359)
||+++.....+++|++|||+|+ |++|++++++|++.|++|+++++++++.+.+ +++|++++++... .+.+.+...+
T Consensus 130 a~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~~~~ 208 (320)
T cd08243 130 AWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL-KELGADEVVIDDGAIAEQLRAAPGG 208 (320)
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEEecCccHHHHHHHhCCC
Confidence 9999988887899999999986 9999999999999999999999999998888 8899988875432 1234444348
Q ss_pred ccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe---eeCHHHH--HhcCcEEEEeecCCH--HHHHHHHHHHHhCC
Q 018246 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL---EVPIFAL--VGARRLVGGSNVGGM--KETQEMLDFCAKHN 320 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~---~~~~~~~--~~k~~~i~g~~~~~~--~~~~~~~~~l~~g~ 320 (359)
+|+++|++++.. +...+++++++|+++.+|...... ....... +.+++++.++..... ..++.++++++++.
T Consensus 209 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T cd08243 209 FDKVLELVGTAT-LKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGH 287 (320)
T ss_pred ceEEEECCChHH-HHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCc
Confidence 999999999865 899999999999999998643221 1222222 257778777665432 35788999999999
Q ss_pred CcccE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 321 IAADI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 321 i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
+++.. +.++++++++|++.+.++...||+|+
T Consensus 288 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 288 LDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred eecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 97644 88999999999999998887789886
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=254.27 Aligned_cols=291 Identities=19% Similarity=0.197 Sum_probs=238.1
Q ss_pred CCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC---CCCCCCCcccccccEEEEEeC--CCCCCCCCCCEEEE
Q 018246 22 TGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW---GVTNYPIVPGHEIVGTVTKVG--NNVSKFKEGDKVGV 96 (359)
Q Consensus 22 ~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~---~~~~~p~~~G~e~~G~V~~vG--~~v~~~~vGdrV~v 96 (359)
+++|++++++.|+|++||||+|+.+.+++|. ++|.+ +....|+.+|-..+|.++... |...+|++||.|..
T Consensus 24 ~d~F~lee~~vp~p~~GqvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~ 99 (340)
T COG2130 24 PDDFRLEEVDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVG 99 (340)
T ss_pred CCCceeEeccCCCCCcCceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEe
Confidence 4679999999999999999999999999882 33433 233456777776655444433 56778999999963
Q ss_pred eccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccc--cccccchhhhhhhH
Q 018246 97 GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDA--GAPLLCAGITVYSP 174 (359)
Q Consensus 97 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~--aa~l~~~~~ta~~~ 174 (359)
. .+|++|.+++.+.+.+++++.-+.. ...|..+..|||.+
T Consensus 100 ~--------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~g 141 (340)
T COG2130 100 V--------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFG 141 (340)
T ss_pred c--------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHH
Confidence 2 5799999999999999986543222 34888899999999
Q ss_pred hHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh---c-CCcc
Q 018246 175 MKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA---M-GTMD 249 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~---~-~~~d 249 (359)
|.+++..++|++|+|.|+ |++|..+.|+||..|+||+.++.++|+.+++.+.+|++.++|++..+..+.+ . .+.|
T Consensus 142 Ll~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GID 221 (340)
T COG2130 142 LLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGID 221 (340)
T ss_pred HHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeE
Confidence 999999999999999875 9999999999999999999999999999999777999999999987554444 3 3999
Q ss_pred EEEECCCChhhHHHHHhccccCCEEEEecCCCCC-------eeeCHHHHHhcCcEEEEeecCCH------HHHHHHHHHH
Q 018246 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-------LEVPIFALVGARRLVGGSNVGGM------KETQEMLDFC 316 (359)
Q Consensus 250 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~k~~~i~g~~~~~~------~~~~~~~~~l 316 (359)
+.||++|++. ++..+..|+..+|++.||..+.. .+-....++.+.+++.|+...+. +-++++.+++
T Consensus 222 vyfeNVGg~v-~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv 300 (340)
T COG2130 222 VYFENVGGEV-LDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWV 300 (340)
T ss_pred EEEEcCCchH-HHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHH
Confidence 9999999988 99999999999999999975531 11223445667899999877321 3378899999
Q ss_pred HhCCCcccEEE-EccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 317 AKHNIAADIEL-VRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 317 ~~g~i~~~~~~-~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
++|+|+..-++ -+||.+++||..|.+++++||.|+++.+
T Consensus 301 ~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~ 340 (340)
T COG2130 301 KEGKIQYRETIVDGLENAPEAFIGLLSGKNFGKLVVKVAD 340 (340)
T ss_pred HcCceeeEeeehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence 99999876644 4799999999999999999999999864
|
|
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=272.51 Aligned_cols=307 Identities=19% Similarity=0.259 Sum_probs=249.8
Q ss_pred cceeeeeecCCCC---CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTG---TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
|++++++..+.+. .+++.+.+.|.+.+++|+|++.++++|++|++.+.|..+....|.++|||++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 4677777654443 3666778888889999999999999999999988776554445778999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+..... ..+|+|++|+.++.++++++|+++++++++.+++.
T Consensus 81 ~~~Gd~V~~~~~~--------------------------------~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~ 128 (336)
T cd08252 81 FKVGDEVYYAGDI--------------------------------TRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLT 128 (336)
T ss_pred CCCCCEEEEcCCC--------------------------------CCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhH
Confidence 9999999743210 13589999999999999999999999999999999
Q ss_pred hhhhhhHhHhcCCCCC-----CCEEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEecCCCH--
Q 018246 168 GITVYSPMKYYGMTEP-----GKHLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDP-- 238 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~-----g~~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-- 238 (359)
+.|||+++.....+.+ |++|+|+|+ |++|++++++|+.+| ++|+++++++++.+.+ +++|++++++.+..
T Consensus 129 ~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~ 207 (336)
T cd08252 129 SLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWV-KELGADHVINHHQDLA 207 (336)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHH-HhcCCcEEEeCCccHH
Confidence 9999999877666676 999999985 999999999999999 8999999999998888 78999999887641
Q ss_pred HHHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC------------
Q 018246 239 AKVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG------------ 305 (359)
Q Consensus 239 ~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~------------ 305 (359)
..+.... +++|+++|++++...+..++++++++|+++.+|... ..++...++.++.++.+.....
T Consensus 208 ~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (336)
T cd08252 208 EQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQ 285 (336)
T ss_pred HHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--CcccchhhhcccceEEEEEeeccccccccchhhH
Confidence 2233333 379999999997655899999999999999998653 3444445556778877654322
Q ss_pred HHHHHHHHHHHHhCCCcccE----EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 306 MKETQEMLDFCAKHNIAADI----ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 306 ~~~~~~~~~~l~~g~i~~~~----~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
...+.++++++.++.+++.. +.++++++++|++.+.++...||++++
T Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 286 HEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE 336 (336)
T ss_pred HHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence 13377889999999998643 347999999999999998888999864
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >cd08249 enoyl_reductase_like enoyl_reductase_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=274.49 Aligned_cols=306 Identities=24% Similarity=0.316 Sum_probs=243.6
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+++++..++ ++.+++.+.+.|.++++||+|++.++++|++|+..+.+.. ....|.++|+|++|+|+.+|++++.+++
T Consensus 1 m~a~~~~~~~-~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (339)
T cd08249 1 QKAAVLTGPG-GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKV 78 (339)
T ss_pred CceEEeccCC-CCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence 5677776544 5778999999999999999999999999999998876544 1234678999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+.. .|+ +...+|+|++|++++.+.++++|+++++++++.+++.+.|
T Consensus 79 Gd~V~~~~~~-~~~--------------------------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~t 131 (339)
T cd08249 79 GDRVAGFVHG-GNP--------------------------NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVT 131 (339)
T ss_pred CCEEEEEecc-ccC--------------------------CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHH
Confidence 9999865421 000 1224699999999999999999999999999999999999
Q ss_pred hhhHhHhcCCC----------CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH
Q 018246 171 VYSPMKYYGMT----------EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 171 a~~~l~~~~~~----------~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
||+++.....+ .++++|||+|+ |.+|++++++|++.|++|+++. ++++.+.+ +++|++++++.++.+
T Consensus 132 a~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~-~~~g~~~v~~~~~~~ 209 (339)
T cd08249 132 AALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLV-KSLGADAVFDYHDPD 209 (339)
T ss_pred HHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHH-HhcCCCEEEECCCch
Confidence 99998776543 68999999996 9999999999999999999887 56788888 889999999876643
Q ss_pred H---HHHhc-CCccEEEECCCChhhHHHHHhcccc--CCEEEEecCCCCCeeeCHHHHHhcCcEEEE---eec-------
Q 018246 240 K---VKAAM-GTMDYIIDTVSAVHSLAPLLGLLKV--NGKLVTVGLPEKPLEVPIFALVGARRLVGG---SNV------- 303 (359)
Q Consensus 240 ~---~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g---~~~------- 303 (359)
. +.+.. +++|+++|++|+...+..+++++++ +|+++.+|.......+ ..+.++.. ...
T Consensus 210 ~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 283 (339)
T cd08249 210 VVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEP------RKGVKVKFVLGYTVFGEIPED 283 (339)
T ss_pred HHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccccC------CCCceEEEEEeeeeccccccc
Confidence 3 33333 3799999999984458999999999 9999999876432111 11112111 111
Q ss_pred --CCHHHHHHHHHHHHhCCCcccE-EEEc--cccHHHHHHHHHcCC-ccEEEEEEc
Q 018246 304 --GGMKETQEMLDFCAKHNIAADI-ELVR--MDQINTAMERLAKSD-VKYRFVIDV 353 (359)
Q Consensus 304 --~~~~~~~~~~~~l~~g~i~~~~-~~~~--l~~~~~a~~~~~~~~-~~gkvvv~~ 353 (359)
.....++.++++++++++.+.. ..++ ++++++||+.+.+++ ..+|+|+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 284 REFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred ccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence 1124477889999999997654 6777 999999999999988 889999875
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=265.75 Aligned_cols=291 Identities=22% Similarity=0.283 Sum_probs=238.2
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhh-ccCCCC--CCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCA-RNEWGV--TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~-~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
+++.+++.+++.|+++++||+||+.++++|++|+..+ .|.... +..|.++|+|++|+|+++|++++.+++||+|+..
T Consensus 3 ~~~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 82 (312)
T cd08269 3 GPGRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGL 82 (312)
T ss_pred CCCeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEe
Confidence 4456889999999999999999999999999999887 665421 2247789999999999999999999999999754
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKY 177 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~ 177 (359)
+ .|+|++|++++.+.++++|+++ ..++.+..++.++++++.
T Consensus 83 ~------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~- 123 (312)
T cd08269 83 S------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR- 123 (312)
T ss_pred c------------------------------------CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-
Confidence 2 3889999999999999999998 232222367788898887
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCH---HHHHHhcC--CccEE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMG--TMDYI 251 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~v 251 (359)
...++++++|+|+|+|.+|.+++++|++.|++ |+++.+.+++.+.+ +++|++++++.+.. ..+.+... ++|++
T Consensus 124 ~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~v 202 (312)
T cd08269 124 RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALA-RELGATEVVTDDSEAIVERVRELTGGAGADVV 202 (312)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCceEecCCCcCHHHHHHHHcCCCCCCEE
Confidence 66678999999998899999999999999998 99999988888766 88999888876543 33444443 79999
Q ss_pred EECCCChhhHHHHHhccccCCEEEEecCCC-CCeeeCHHHHHhcCcEEEEeecCCH----HHHHHHHHHHHhCCCcc---
Q 018246 252 IDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGGM----KETQEMLDFCAKHNIAA--- 323 (359)
Q Consensus 252 id~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~k~~~i~g~~~~~~----~~~~~~~~~l~~g~i~~--- 323 (359)
+|++|+...+...+++|+++|+++.+|... ....+++..+..+++++.++..... +.+++++++++++.+++
T Consensus 203 ld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 282 (312)
T cd08269 203 IEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSL 282 (312)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhh
Confidence 999987666889999999999999998654 2345566667778888877654332 57899999999999975
Q ss_pred cEEEEccccHHHHHHHHHcCCc-cEEEEE
Q 018246 324 DIELVRMDQINTAMERLAKSDV-KYRFVI 351 (359)
Q Consensus 324 ~~~~~~l~~~~~a~~~~~~~~~-~gkvvv 351 (359)
..+.+++++++++++.+.+++. .+|+++
T Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 283 LTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred eeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 3378999999999999998864 589886
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=264.64 Aligned_cols=310 Identities=21% Similarity=0.302 Sum_probs=248.2
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..+++++.+++++.+.|.|+++||+|++.++++|++|+....|.++ ...+|.++|||++|+|++ ++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 6777776555555788999999999999999999999999999998877653 133577899999999999 7778899
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+..... .+...+|+|++|++++.+.++++|+++++++++.+++.++
T Consensus 79 ~Gd~V~~~~~~-----------------------------~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ 129 (324)
T cd08288 79 PGDRVVLTGWG-----------------------------VGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGF 129 (324)
T ss_pred CCCEEEECCcc-----------------------------CCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHH
Confidence 99999754210 0112358999999999999999999999999999999999
Q ss_pred hhhhHhH---hcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH-HHHh
Q 018246 170 TVYSPMK---YYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK-VKAA 244 (359)
Q Consensus 170 ta~~~l~---~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~ 244 (359)
+|+.++. .....+++++|+|+|+ |++|++++++|+.+|++|++++.++++.+.+ +++|+++++++++... +..+
T Consensus 130 ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 208 (324)
T cd08288 130 TAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYL-RSLGASEIIDRAELSEPGRPL 208 (324)
T ss_pred HHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HhcCCCEEEEcchhhHhhhhh
Confidence 9887754 3444336789999997 9999999999999999999999999998888 8899999998765432 2333
Q ss_pred c-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC------HHHHHHHHHHH
Q 018246 245 M-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG------MKETQEMLDFC 316 (359)
Q Consensus 245 ~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~------~~~~~~~~~~l 316 (359)
. +++|.++|++++.. +...+..++.+|+++.+|.... ...++...++.++.++.+..... ...++.+.+++
T Consensus 209 ~~~~~~~~~d~~~~~~-~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (324)
T cd08288 209 QKERWAGAVDTVGGHT-LANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDL 287 (324)
T ss_pred ccCcccEEEECCcHHH-HHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHH
Confidence 3 36899999999854 7788899999999999987532 22344555557899998864321 13466677788
Q ss_pred HhCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 317 AKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 317 ~~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.++.+.+.++.++++++++||+.+.+++..||+++++
T Consensus 288 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~ 324 (324)
T cd08288 288 DPALLEALTREIPLADVPDAAEAILAGQVRGRVVVDV 324 (324)
T ss_pred hcCCccccceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence 8888877668999999999999999999889999864
|
Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=268.96 Aligned_cols=307 Identities=23% Similarity=0.278 Sum_probs=240.2
Q ss_pred cceeeeeecCCCC-CccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCC---------------CCCCCCccccc
Q 018246 11 QKAIGWAARDNTG-TFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWG---------------VTNYPIVPGHE 73 (359)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~---------------~~~~p~~~G~e 73 (359)
||++++..++++. .+++++.+.|.| +++||+|+|+++++|++|+....|... ....|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 5677666544432 378888899989 499999999999999999998877421 23557899999
Q ss_pred ccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECC
Q 018246 74 IVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153 (359)
Q Consensus 74 ~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp 153 (359)
++|+|+.+|++++.+++||||+..+.. ...|+|++|++++++.++++|
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~--------------------------------~~~g~~~~~~~v~~~~~~~lp 128 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP--------------------------------WSQGTHAEYVVVPENEVSKKP 128 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC--------------------------------CCCccceeEEEecHHHeecCC
Confidence 999999999999999999999764311 134899999999999999999
Q ss_pred CCCCccccccccchhhhhhhHhHhcCCCCC----CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC
Q 018246 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEP----GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG 228 (359)
Q Consensus 154 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g 228 (359)
+++++++++.+++.+.|||+++.....+.+ |++|+|+|+ |++|++++++|+++|++|+++.++ ++.+.+ +++|
T Consensus 129 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~-~~~g 206 (350)
T cd08248 129 KNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLV-KSLG 206 (350)
T ss_pred CCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHH-HHhC
Confidence 999999999999999999999988776554 999999985 999999999999999999888765 455555 8899
Q ss_pred CcEEecCCCHHHHHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--C--eeeC----H--HHHHh---
Q 018246 229 ADAFLVSSDPAKVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--P--LEVP----I--FALVG--- 293 (359)
Q Consensus 229 ~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~--~~~~----~--~~~~~--- 293 (359)
.+++++..+.+...++. +++|+++|++|+.. +..++++++++|+++.+|.... . .... . ..+..
T Consensus 207 ~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (350)
T cd08248 207 ADDVIDYNNEDFEEELTERGKFDVILDTVGGDT-EKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNV 285 (350)
T ss_pred CceEEECCChhHHHHHHhcCCCCEEEECCChHH-HHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHH
Confidence 98888877654444443 37999999999875 8999999999999999985421 1 1110 0 01111
Q ss_pred ----cCcEE-EEeecCCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 294 ----ARRLV-GGSNVGGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 294 ----k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+...+ .+........+.++++++.++.+.+.. +.|++++++++|+.+.++...+|++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 350 (350)
T cd08248 286 KSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK 350 (350)
T ss_pred HHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence 11111 111223356789999999999987655 899999999999999988877898863
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=263.96 Aligned_cols=311 Identities=22% Similarity=0.309 Sum_probs=254.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++++..++.+..+++.+++.|.+.+++|+|++.++++|++|+....|.++ ....|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 4667766555556688889999999999999999999999999998877654 345678899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+..+.. + ....|++++|+.++.+.++++|+++++++++.+++++.
T Consensus 81 ~Gd~v~~~~~~-----------------------~-------~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ 130 (325)
T cd08253 81 VGDRVWLTNLG-----------------------W-------GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPAL 130 (325)
T ss_pred CCCEEEEeccc-----------------------c-------CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHH
Confidence 99999755310 0 01348999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
+||+++.....+.+|++|+|+|+ |.+|+++++++++.|++|+++++++++.+.+ +++|++++++....+. +....
T Consensus 131 ~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 209 (325)
T cd08253 131 TAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV-RQAGADAVFNYRAEDLADRILAAT 209 (325)
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEeCCCcCHHHHHHHHc
Confidence 99999988777799999999986 9999999999999999999999999998888 7899988887765433 33333
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCH------HHHHHHHHHHH
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM------KETQEMLDFCA 317 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~------~~~~~~~~~l~ 317 (359)
+++|++++++++.. +...+++++++|+++.+|.......++...++.++.++.+...+.. ..++.+.+++.
T Consensus 210 ~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (325)
T cd08253 210 AGQGVDVIIEVLANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLA 288 (325)
T ss_pred CCCceEEEEECCchHH-HHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHH
Confidence 37999999999876 7888999999999999987543344555555677888877654322 22555667778
Q ss_pred hCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 318 KHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 318 ~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.+++.. +.+++++++++++.+.++...||+++++
T Consensus 289 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 289 DGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred CCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 88887654 7899999999999999888889999864
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=262.81 Aligned_cols=304 Identities=24% Similarity=0.329 Sum_probs=252.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++...+.+..+++.+.+.|.+.+++|+||+.++++|++|+....|.++ ....|.++|||++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 5777776555566778878777888999999999999999999998877653 234577899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+... .+|+|++|+.++.+.++++|+++++++++.++..+.
T Consensus 81 ~Gd~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 125 (323)
T cd05276 81 VGDRVCALL-----------------------------------AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFF 125 (323)
T ss_pred CCCEEEEec-----------------------------------CCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHH
Confidence 999997432 248999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
++|+++.....+.++++|+|+|+ |++|++++++++..|++|+++++++++.+.+ +++|++.+++....+. +.+..
T Consensus 126 ~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 204 (323)
T cd05276 126 TAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RALGADVAINYRTEDFAEEVKEAT 204 (323)
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcCCCEEEeCCchhHHHHHHHHh
Confidence 99999888777799999999986 9999999999999999999999999988888 7899888887765432 33333
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH----------HHHHHH
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM----------KETQEM 312 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~----------~~~~~~ 312 (359)
+++|+++++.|+.. +...+++++++|+++.+|.... ...++...++.+++++.++..... ..+.++
T Consensus 205 ~~~~~d~vi~~~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (323)
T cd05276 205 GGRGVDVILDMVGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHV 283 (323)
T ss_pred CCCCeEEEEECCchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHH
Confidence 37999999999877 8889999999999999986542 234555666678999988765432 125677
Q ss_pred HHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 313 LDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 313 ~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
++++.++++++.. +.|++++++++++.+.++...||+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 284 WPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred HHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 8888899887654 88999999999999998877788874
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=255.52 Aligned_cols=265 Identities=31% Similarity=0.493 Sum_probs=225.1
Q ss_pred eEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCC
Q 018246 39 DVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC 117 (359)
Q Consensus 39 eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~ 117 (359)
||+|+|.++++|++|++.+.|..+ ....|.++|+|++|+|+++|++++.|++||+|+..+.. .|+.|.+|+. .|
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-~~~~~~~~~~----~~ 75 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNL-GCGTCELCRE----LC 75 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCC-CCCCCHHHHh----hC
Confidence 689999999999999999988764 34557889999999999999999999999999877654 8999999997 67
Q ss_pred cccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHH
Q 018246 118 PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197 (359)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~ 197 (359)
.+..+. +....|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+.++++|||+|+|++|+
T Consensus 76 ~~~~~~-------~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~ 148 (271)
T cd05188 76 PGGGIL-------GEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGL 148 (271)
T ss_pred CCCCEe-------ccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHH
Confidence 766443 3345699999999999999999999999999999999999999999988888999999999866999
Q ss_pred HHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh----cCCccEEEECCCChhhHHHHHhccccCCE
Q 018246 198 VAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA----MGTMDYIIDTVSAVHSLAPLLGLLKVNGK 273 (359)
Q Consensus 198 ~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----~~~~d~vid~~g~~~~~~~~~~~l~~~G~ 273 (359)
+++++++..|.+|+++++++++.+.+ +++|.+++++..+.+....+ .+++|++++++++...+..++++++++|+
T Consensus 149 ~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~ 227 (271)
T cd05188 149 LAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGR 227 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 99999999999999999999888888 78898888877654332222 23799999999984448899999999999
Q ss_pred EEEecCCCCCeee-CHHHHHhcCcEEEEeecCCHHHHHHHHHHH
Q 018246 274 LVTVGLPEKPLEV-PIFALVGARRLVGGSNVGGMKETQEMLDFC 316 (359)
Q Consensus 274 ~v~~g~~~~~~~~-~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l 316 (359)
++.+|........ .....+.+++++.++..+.+.+++++++++
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (271)
T cd05188 228 IVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDLL 271 (271)
T ss_pred EEEEccCCCCCCcccHHHHHhcceEEEEeecCCHHHHHHHHhhC
Confidence 9999876543222 355667899999999999888899888763
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=256.64 Aligned_cols=294 Identities=22% Similarity=0.310 Sum_probs=242.6
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccc
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLV 100 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~ 100 (359)
.+..+.+.+.+.+.+.+++|+|+|.++++|++|++...|.++. .+|.++|||++|+|+.+|++++.+++||+|+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~-- 86 (320)
T cd05286 10 GPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG-- 86 (320)
T ss_pred CccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCCCEEEEec--
Confidence 3445666666667789999999999999999999988776542 4577899999999999999999999999997432
Q ss_pred cCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCC
Q 018246 101 ASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180 (359)
Q Consensus 101 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~ 180 (359)
..|+|++|+.++.+.++++|++++.++++.+.+...++|+++.....
T Consensus 87 ---------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~ 133 (320)
T cd05286 87 ---------------------------------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYP 133 (320)
T ss_pred ---------------------------------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcC
Confidence 13899999999999999999999999999999999999999988777
Q ss_pred CCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEC
Q 018246 181 TEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAMG--TMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~ 254 (359)
+.+|++|+|+|+ |++|++++++|+.+|++|+++++++++.+.+ +++|++++++..+.+ .+..... ++|++++|
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~ 212 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA-RAAGADHVINYRDEDFVERVREITGGRGVDVVYDG 212 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEEC
Confidence 899999999995 9999999999999999999999999998888 789998888776543 2333332 79999999
Q ss_pred CCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecC----CH----HHHHHHHHHHHhCCCcccE
Q 018246 255 VSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVG----GM----KETQEMLDFCAKHNIAADI 325 (359)
Q Consensus 255 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~----~~----~~~~~~~~~l~~g~i~~~~ 325 (359)
+++.. +..++++++++|+++.+|..... ..++...+..+++++.+.... .. ..+.++++++.++.+.+..
T Consensus 213 ~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (320)
T cd05286 213 VGKDT-FEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEI 291 (320)
T ss_pred CCcHh-HHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcc
Confidence 99865 88999999999999999865432 234454544788888654321 11 2256688888899887655
Q ss_pred -EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 326 -ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 326 -~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
+.|++++++++|+.+.++...+|++++
T Consensus 292 ~~~~~~~~~~~a~~~~~~~~~~~~vv~~ 319 (320)
T cd05286 292 GKRYPLADAAQAHRDLESRKTTGKLLLI 319 (320)
T ss_pred cceEcHHHHHHHHHHHHcCCCCceEEEe
Confidence 789999999999999988888999985
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=260.86 Aligned_cols=289 Identities=21% Similarity=0.232 Sum_probs=234.9
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEe
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~ 97 (359)
.++.+++.+.+.|.+.+++|+||+.++++|++|.....+... ....+.++|+|++|+|+++|++ .+++||||+.
T Consensus 16 ~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~- 92 (329)
T cd05288 16 PPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSG- 92 (329)
T ss_pred CccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEec-
Confidence 456788888999999999999999999999988765554321 1122457899999999999964 7999999962
Q ss_pred ccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeC-CceEECCCCCC--cccccc-ccchhhhhhh
Q 018246 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQ-HYVLRFPDNMP--LDAGAP-LLCAGITVYS 173 (359)
Q Consensus 98 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~-~~~~~lp~~l~--~~~aa~-l~~~~~ta~~ 173 (359)
.++|++|+.++. +.++++|++++ +.++++ +++++.|||+
T Consensus 93 -------------------------------------~~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~ 135 (329)
T cd05288 93 -------------------------------------FLGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYF 135 (329)
T ss_pred -------------------------------------ccceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHH
Confidence 157999999999 99999999985 445545 8999999999
Q ss_pred HhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH-cCCcEEecCCCHHH---HHHhc-CC
Q 018246 174 PMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK-LGADAFLVSSDPAK---VKAAM-GT 247 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~-~g~~~v~~~~~~~~---~~~~~-~~ 247 (359)
++.....+.++++|||+|+ |++|++++++|++.|++|+++++++++.+.+ ++ +|++++++.++.+. +.+.. ++
T Consensus 136 ~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 214 (329)
T cd05288 136 GLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL-VEELGFDAAINYKTPDLAEALKEAAPDG 214 (329)
T ss_pred HHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhhcCCceEEecCChhHHHHHHHhccCC
Confidence 9988777799999999985 9999999999999999999999999998888 55 99999888776433 23333 47
Q ss_pred ccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe------eeCHHHHHhcCcEEEEeecCCH-----HHHHHHHHHH
Q 018246 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL------EVPIFALVGARRLVGGSNVGGM-----KETQEMLDFC 316 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~~~~~~~~k~~~i~g~~~~~~-----~~~~~~~~~l 316 (359)
+|+++|++|+.. +..++++++++|+++.+|...... .++....+.++.++.++..... ..+.++++++
T Consensus 215 ~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (329)
T cd05288 215 IDVYFDNVGGEI-LDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWL 293 (329)
T ss_pred ceEEEEcchHHH-HHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHH
Confidence 999999999865 899999999999999998654321 1335556778899988776543 3478889999
Q ss_pred HhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 317 AKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 317 ~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
.++.+++.. ..+++++++++++.+.+++..||+++
T Consensus 294 ~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 294 AEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred HCCCccccccccccHHHHHHHHHHHhcCCCccceeC
Confidence 999997644 67899999999999998887788874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=260.46 Aligned_cols=301 Identities=21% Similarity=0.314 Sum_probs=241.8
Q ss_pred ceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|++.+...+.+.++++.+.+.|.|.+++|+|++.++++|++|+.++.|..+. ..+|.++|||++|+|+.+|++++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 4566666556677889999999999999999999999999999998876542 346778999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+ ..|+|++|+.++.+.++++|+++++++++.+++++.+
T Consensus 82 Gd~V~~~~-----------------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~t 126 (331)
T cd08273 82 GDRVAALT-----------------------------------RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVT 126 (331)
T ss_pred CCEEEEeC-----------------------------------CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHH
Confidence 99997543 1388999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHH-Hhc-CC
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVK-AAM-GT 247 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~-~~ 247 (359)
||+++.....+.+|++|+|+|+ |.+|++++++|+..|++|+++++ +++.+.+ +++|+..+ +.+..+... ... ++
T Consensus 127 a~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~ 203 (331)
T cd08273 127 AYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAAL-RELGATPI-DYRTKDWLPAMLTPGG 203 (331)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHH-HHcCCeEE-cCCCcchhhhhccCCC
Confidence 9999988777799999999986 99999999999999999999987 7777777 78997543 333322211 222 47
Q ss_pred ccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCee--eCH--------------HHHHhcCcEEEEeecC-------
Q 018246 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLE--VPI--------------FALVGARRLVGGSNVG------- 304 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~--~~~--------------~~~~~k~~~i~g~~~~------- 304 (359)
+|++++++++.. +..++++++++|+++.+|....... ... ...+.+..++......
T Consensus 204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 282 (331)
T cd08273 204 VDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKL 282 (331)
T ss_pred ceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHH
Confidence 999999999987 8899999999999999986543211 110 0112233333332221
Q ss_pred CHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 305 GMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 305 ~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
..+.++.++++++++.+++.. +.+++++++++|+.+.++...||+|+
T Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 283 FRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred HHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 125688899999999998655 88999999999999998888899886
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=256.65 Aligned_cols=307 Identities=23% Similarity=0.309 Sum_probs=248.5
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++++...+.++.+++++.+.|.+.+++|+|++.++++|++|+....|... ....|.++|||++|+|+.+|+++..++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 5677776555555677777777888999999999999999999998877543 233467899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+.... ++ + ...|+|++|+.++.+.++++|+++++.+++.+++.+.
T Consensus 81 ~Gd~V~~~~~-------------------~~----~-------~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~ 130 (326)
T cd08272 81 VGDEVYGCAG-------------------GL----G-------GLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGI 130 (326)
T ss_pred CCCEEEEccC-------------------Cc----C-------CCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHH
Confidence 9999974321 00 0 1348999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHHHhcC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVKAAMG 246 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~ 246 (359)
+||+++.....+++|++++|+|+ |.+|++++++|+..|++|++++++ ++.+.+ +++|.+.+++.... ..+.+...
T Consensus 131 ~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 208 (326)
T cd08272 131 TAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFA-RSLGADPIIYYRETVVEYVAEHTG 208 (326)
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHH-HHcCCCEEEecchhHHHHHHHhcC
Confidence 99999878788899999999985 999999999999999999999988 888888 78999888876543 22333333
Q ss_pred --CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC-----------HHHHHHHH
Q 018246 247 --TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG-----------MKETQEML 313 (359)
Q Consensus 247 --~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~-----------~~~~~~~~ 313 (359)
++|++++++++.. +...+++++++|+++.+|... ..+......+++++.+..... ...+..++
T Consensus 209 ~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (326)
T cd08272 209 GRGFDVVFDTVGGET-LDASFEAVALYGRVVSILGGA---THDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAA 284 (326)
T ss_pred CCCCcEEEECCChHH-HHHHHHHhccCCEEEEEecCC---ccchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHH
Confidence 7999999999866 888999999999999997653 222223336778877765432 34578888
Q ss_pred HHHHhCCCccc-E-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 314 DFCAKHNIAAD-I-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 314 ~~l~~g~i~~~-~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++.++.+++. . +.|++++++++|+.+.++...+|+++++
T Consensus 285 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 285 RLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred HHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 99999998765 3 8899999999999998887789999864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=252.48 Aligned_cols=306 Identities=25% Similarity=0.341 Sum_probs=250.3
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++.+...+.+..+++.+.+.+.+++++++|+|.++++|++|+....+.++. ..+|.++|||++|+|+.+|+++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 45666554444555667676667789999999999999999999988776542 33467899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+... .+|+|++|+.++.+.++++|+++++.+++.+++++.
T Consensus 81 ~Gd~V~~~~-----------------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 125 (325)
T TIGR02824 81 VGDRVCALV-----------------------------------AGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFF 125 (325)
T ss_pred CCCEEEEcc-----------------------------------CCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHH
Confidence 999997431 238899999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
++|+++.....+.++++|+|+|+ |++|++++++++..|++|+++.+++++.+.+ +++|.+.+++....+. +....
T Consensus 126 ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02824 126 TVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EALGADIAINYREEDFVEVVKAET 204 (325)
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCchhHHHHHHHHc
Confidence 99999888888899999999986 9999999999999999999999999888877 8899888877655433 33333
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH----------HHHHHH
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM----------KETQEM 312 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~----------~~~~~~ 312 (359)
+++|++++++++.. +..++++++++|+++.+|.... ...++...++.+++++.+...... ..+.++
T Consensus 205 ~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (325)
T TIGR02824 205 GGKGVDVILDIVGGSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHV 283 (325)
T ss_pred CCCCeEEEEECCchHH-HHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHH
Confidence 26999999999865 8899999999999999986542 225566666689999998775431 124667
Q ss_pred HHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 313 LDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 313 ~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++++++.+++.. +.+++++++++++.+.++...||+++++
T Consensus 284 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 325 (325)
T TIGR02824 284 WPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKIVLTV 325 (325)
T ss_pred HHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence 7888899887544 7899999999999999888789999864
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=254.30 Aligned_cols=308 Identities=26% Similarity=0.369 Sum_probs=241.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++++..++....+++.+.+.|++.+++|+||+.++++|++|+..+.|......+|.++|||++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 56766664332237889999999999999999999999999999888776543344678999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||+|+..+.. ...|+|++|+.++.+.++++|+++++.+++.+.+.+.+
T Consensus 81 Gd~V~~~~~~--------------------------------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~ 128 (325)
T cd08271 81 GDRVAYHASL--------------------------------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLT 128 (325)
T ss_pred CCEEEeccCC--------------------------------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHH
Confidence 9999754311 13489999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc-
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM- 245 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~- 245 (359)
|++++.....+.+|++|+|+|+ |.+|++++++++..|++|+++. ++++.+.+ +++|++.+++....+ .+....
T Consensus 129 a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 206 (325)
T cd08271 129 AYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYV-KSLGADHVIDYNDEDVCERIKEITG 206 (325)
T ss_pred HHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHH-HHcCCcEEecCCCccHHHHHHHHcC
Confidence 9999988888899999999997 8999999999999999998877 66777777 789998888766532 233333
Q ss_pred -CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCH--HHHHhcCcEEEEeecCC--------HHHHHHHHH
Q 018246 246 -GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGG--------MKETQEMLD 314 (359)
Q Consensus 246 -~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~k~~~i~g~~~~~--------~~~~~~~~~ 314 (359)
.++|++++++++.. ....+++++++|+++.++.......... .....+.+.+....... .+.+.++++
T Consensus 207 ~~~~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (325)
T cd08271 207 GRGVDAVLDTVGGET-AAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLE 285 (325)
T ss_pred CCCCcEEEECCCcHh-HHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHH
Confidence 27999999999876 6778999999999999875432211111 11122233333322111 123577888
Q ss_pred HHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 315 FCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 315 ~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.++.+++.. +.++++++.++++.+.++...+|+++++
T Consensus 286 ~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 286 LLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred HHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 99999887644 8899999999999999888789999863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=252.76 Aligned_cols=302 Identities=25% Similarity=0.361 Sum_probs=243.4
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
|+++.+...+....+++.+.+.|.+++++|+|++.++++|++|+..+.|... ....|.++|||++|+|+.+|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 5666665544444566777777888999999999999999999998877542 3445788999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+..+.. ...|+|++|+.++.+.++++|+++++..++.+++.
T Consensus 81 ~~~G~~V~~~~~~--------------------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 128 (309)
T cd05289 81 FKVGDEVFGMTPF--------------------------------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLA 128 (309)
T ss_pred CCCCCEEEEccCC--------------------------------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHH
Confidence 9999999755311 12489999999999999999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc-
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM- 245 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~- 245 (359)
+.++++++.....+.++++|+|+|+ |.+|++++++++..|++|+++.+++ +.+.+ +++|.+++++....+......
T Consensus 129 ~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~ 206 (309)
T cd05289 129 GLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFL-RSLGADEVIDYTKGDFERAAAP 206 (309)
T ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHH-HHcCCCEEEeCCCCchhhccCC
Confidence 9999999988887799999999996 9999999999999999999998877 77777 789988888765533222112
Q ss_pred CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC-HHHHHHHHHHHHhCCCccc
Q 018246 246 GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG-MKETQEMLDFCAKHNIAAD 324 (359)
Q Consensus 246 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~-~~~~~~~~~~l~~g~i~~~ 324 (359)
.++|++++++++.. ...++++++++|+++.+|....... ..+.++.++....... ...+..++++++++.+.+.
T Consensus 207 ~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (309)
T cd05289 207 GGVDAVLDTVGGET-LARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPV 281 (309)
T ss_pred CCceEEEECCchHH-HHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEe
Confidence 37999999999885 8999999999999999986543211 2334566655543322 5678899999999998765
Q ss_pred E-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 325 I-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 325 ~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
. +.|++++++++|+.+..+...+|+++
T Consensus 282 ~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 282 VDRVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred eccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 5 78999999999999998877788764
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=255.71 Aligned_cols=310 Identities=21% Similarity=0.231 Sum_probs=228.6
Q ss_pred ceeeeeecCCCCCccceeeecCC-CCCCeEEEEEeeeecchhhhhhhccCCCCCC-CCCcccccccEEEEEeCCCCC-CC
Q 018246 12 KAIGWAARDNTGTFSPFHFSRRE-TGADDVTIKILFCGICHSDLHCARNEWGVTN-YPIVPGHEIVGTVTKVGNNVS-KF 88 (359)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~-~p~~~G~e~~G~V~~vG~~v~-~~ 88 (359)
+++++...+.+..++..+++.|. +++++|+||+.++++|++|+..+.+...... .|.++|+|++|+|+++|++++ .|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 34555443334334444444443 4899999999999999999988754322122 367899999999999999998 89
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC----ceEECCCCCCccccccc
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH----YVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~----~~~~lp~~l~~~~aa~l 164 (359)
++||+|+..... .....|+|++|++++.. .++++|+++++++++.+
T Consensus 82 ~~Gd~V~~~~~~------------------------------~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~ 131 (352)
T cd08247 82 KVGDEVCGIYPH------------------------------PYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAW 131 (352)
T ss_pred CCCCEEEEeecC------------------------------CCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHh
Confidence 999999754311 00135899999999987 78999999999999999
Q ss_pred cchhhhhhhHhHhcC-CCCCCCEEEEECC-chHHHHHHHHHHHC-CC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH-
Q 018246 165 LCAGITVYSPMKYYG-MTEPGKHLGVAGL-GGLGHVAVKIGKAF-GL-KVTVISTSPKKESEAISKLGADAFLVSSDPA- 239 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~-~~~~g~~VlI~G~-g~vG~~a~~la~~~-g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~- 239 (359)
++++.|||+++.... .+++|++|+|+|+ |.+|++++++|+.. |. .|+.+. ++++.+.+ +++|++++++.++.+
T Consensus 132 ~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~-~~~g~~~~i~~~~~~~ 209 (352)
T cd08247 132 PLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELN-KKLGADHFIDYDAHSG 209 (352)
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHH-HHhCCCEEEecCCCcc
Confidence 999999999998887 6799999999987 79999999999987 55 566665 45556666 889999988865433
Q ss_pred --H----HHHhc--CCccEEEECCCChhhHHHHHhccc---cCCEEEEecCCC-CCee-----------eCHHHH----H
Q 018246 240 --K----VKAAM--GTMDYIIDTVSAVHSLAPLLGLLK---VNGKLVTVGLPE-KPLE-----------VPIFAL----V 292 (359)
Q Consensus 240 --~----~~~~~--~~~d~vid~~g~~~~~~~~~~~l~---~~G~~v~~g~~~-~~~~-----------~~~~~~----~ 292 (359)
. +.... +++|+++||+|+......++++++ ++|+++.++... .... .....+ .
T Consensus 210 ~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (352)
T cd08247 210 VKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLG 289 (352)
T ss_pred cchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhc
Confidence 2 22223 389999999998655888999999 999999874322 1111 011111 1
Q ss_pred hcCcEEEEeec-CCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 293 GARRLVGGSNV-GGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 293 ~k~~~i~g~~~-~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.+...+..... .....+..+++++.++.+++.. +.++++++++||+.+.+++..||+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~ 352 (352)
T cd08247 290 LWSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV 352 (352)
T ss_pred CCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 12222222111 1124578899999999998655 8899999999999999888889999864
|
This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=249.38 Aligned_cols=311 Identities=22% Similarity=0.310 Sum_probs=249.5
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
|+++.+...+.+..+++.+.+.|.+++++++|+|.++++|++|+....|.+. ...+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 4566655434455677777777888999999999999999999988877654 234477899999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|+..+.. +....|++++|+.++.+.++++|+++++++++.+++.+.
T Consensus 81 ~Gd~V~~~~~~------------------------------~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 130 (328)
T cd08268 81 VGDRVSVIPAA------------------------------DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYL 130 (328)
T ss_pred CCCEEEecccc------------------------------ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHH
Confidence 99999754310 012348999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
++|.++.....+.++++|+|+|+ |.+|++++++++..|++|+++++++++.+.+ +++|.+.+++.+..+. +....
T Consensus 131 ~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~ 209 (328)
T cd08268 131 TAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL-LALGAAHVIVTDEEDLVAEVLRIT 209 (328)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcCCCEEEecCCccHHHHHHHHh
Confidence 99999988877789999999986 9999999999999999999999999888888 7889888887665322 33333
Q ss_pred C--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC----HHH----HHHHHH
Q 018246 246 G--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG----MKE----TQEMLD 314 (359)
Q Consensus 246 ~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~----~~~----~~~~~~ 314 (359)
. ++|++++++++.. ...++++++++|+++.+|.... ...++....+.++.++.+..... ..+ ++.+.+
T Consensus 210 ~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (328)
T cd08268 210 GGKGVDVVFDPVGGPQ-FAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILD 288 (328)
T ss_pred CCCCceEEEECCchHh-HHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHH
Confidence 2 7999999999965 8889999999999999986442 23445554577888888876542 223 444556
Q ss_pred HHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 315 FCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 315 ~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.++.+.+.. ..|++++++++++.+.++...+|+++++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 289 GLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred HHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 67778786654 7899999999999998888788999863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=247.10 Aligned_cols=304 Identities=27% Similarity=0.414 Sum_probs=246.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCC-CCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETG-ADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
|+++++...+.+..+++.+.+ |.+. +++++|++.++++|++|+..+.|.+. ...+|.++|+|++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 456665543445567776666 6665 59999999999999999998877653 23446689999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||+|+..+ ..|++++|+.++.+.++++|+++++.+++.+...+
T Consensus 80 ~~G~~V~~~~-----------------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 124 (323)
T cd08241 80 KVGDRVVALT-----------------------------------GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTY 124 (323)
T ss_pred CCCCEEEEec-----------------------------------CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHH
Confidence 9999997542 13889999999999999999999999988899999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHh
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAA 244 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~ 244 (359)
.+|+.++.....+.++++|+|+|+ |++|++++++|+..|++|+++++++++.+.+ +++|++.+++....+. +...
T Consensus 125 ~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~ 203 (323)
T cd08241 125 GTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA-RALGADHVIDYRDPDLRERVKAL 203 (323)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH-HHcCCceeeecCCccHHHHHHHH
Confidence 999999887777789999999997 9999999999999999999999999998888 7889888887665332 3333
Q ss_pred cC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCee-eCHHHHHhcCcEEEEeecCCH---------HHHHHH
Q 018246 245 MG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLE-VPIFALVGARRLVGGSNVGGM---------KETQEM 312 (359)
Q Consensus 245 ~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~k~~~i~g~~~~~~---------~~~~~~ 312 (359)
.. ++|++++++|+.. ...++++++++|+++.+|....... ++....+.++.++.+...... ..++++
T Consensus 204 ~~~~~~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
T cd08241 204 TGGRGVDVVYDPVGGDV-FEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAEL 282 (323)
T ss_pred cCCCCcEEEEECccHHH-HHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHH
Confidence 32 7999999999855 8889999999999999986543322 334445678888888765432 447788
Q ss_pred HHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEE
Q 018246 313 LDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVID 352 (359)
Q Consensus 313 ~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~ 352 (359)
++++.++.+++.. +.|+++++.++|+.+.++...+|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~ 323 (323)
T cd08241 283 FDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVLT 323 (323)
T ss_pred HHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence 8999999887655 789999999999999888777888863
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=248.32 Aligned_cols=298 Identities=22% Similarity=0.315 Sum_probs=232.3
Q ss_pred cCCCCCc--cceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCCCCCCCE
Q 018246 19 RDNTGTF--SPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93 (359)
Q Consensus 19 ~~~~~~~--~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdr 93 (359)
++.+.++ ++.+.+.|.++++||+|++.++++|++|++...|..+ ....+..+|||++|+|+++|++++++++||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~ 85 (319)
T cd08267 6 YGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDE 85 (319)
T ss_pred CCChhhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCE
Confidence 3444454 7778888999999999999999999999998877542 1234668999999999999999999999999
Q ss_pred EEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhh
Q 018246 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYS 173 (359)
Q Consensus 94 V~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~ 173 (359)
|+..+.. ...|+|++|+.++.+.++++|+++++++++.+++.+.+||+
T Consensus 86 V~~~~~~--------------------------------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~ 133 (319)
T cd08267 86 VFGRLPP--------------------------------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQ 133 (319)
T ss_pred EEEeccC--------------------------------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHH
Confidence 9755321 13489999999999999999999999999999999999999
Q ss_pred HhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc--CCccE
Q 018246 174 PMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTMDY 250 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~ 250 (359)
++.....+++|++|+|+|+ |++|++++++|+..|++|++++++ ++.+.+ +++|.+++++....+...... +++|+
T Consensus 134 ~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~ 211 (319)
T cd08267 134 ALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELV-RSLGADEVIDYTTEDFVALTAGGEKYDV 211 (319)
T ss_pred HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHH-HHcCCCEeecCCCCCcchhccCCCCCcE
Confidence 9998887799999999997 999999999999999999998865 677777 889998888765433222222 37999
Q ss_pred EEECCCChh-hHHHHHhccccCCEEEEecCCCCCeeeC-----HHHH-HhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc
Q 018246 251 IIDTVSAVH-SLAPLLGLLKVNGKLVTVGLPEKPLEVP-----IFAL-VGARRLVGGSNVGGMKETQEMLDFCAKHNIAA 323 (359)
Q Consensus 251 vid~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----~~~~-~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~ 323 (359)
+++|+++.. .....+..++++|+++.+|......... .... ..+.+.... .......+.++++++.++++++
T Consensus 212 vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 290 (319)
T cd08267 212 IFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFL-AKPNAEDLEQLAELVEEGKLKP 290 (319)
T ss_pred EEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccccceEEEEE-ecCCHHHHHHHHHHHHCCCeee
Confidence 999998532 2334444599999999998654321111 1111 112222222 2223677999999999999876
Q ss_pred cE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 324 DI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 324 ~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
.. +.|+++++++||+.+.++...+|+++
T Consensus 291 ~~~~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 291 VIDSVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred eeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 55 88999999999999998877788874
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08251 polyketide_synthase polyketide synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=243.89 Aligned_cols=283 Identities=21% Similarity=0.354 Sum_probs=229.1
Q ss_pred cCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCcccc
Q 018246 32 RRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQ 110 (359)
Q Consensus 32 ~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~ 110 (359)
.|.+.+++|+|++.++++|++|+..+.|.++ ...+|.++|+|++|+|+++|++++++++||+|+..+.
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----------- 70 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG----------- 70 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence 5778999999999999999999999887654 2356778999999999999999999999999975431
Q ss_pred CCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 111 QGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
...|+|++|++++.+.++++|+++++++++.++..+.+||+++. ...+++|++|+|+
T Consensus 71 ----------------------~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~ 127 (303)
T cd08251 71 ----------------------ESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQ 127 (303)
T ss_pred ----------------------CCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEe
Confidence 13489999999999999999999999999999999999999986 5666999999998
Q ss_pred C-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhcC--CccEEEECCCChhhHHHH
Q 018246 191 G-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAMG--TMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 191 G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~--~~d~vid~~g~~~~~~~~ 264 (359)
| +|.+|+++++++++.|++|+++++++++.+.+ +++|++.+++....+. +..... ++|+++|++++.. ....
T Consensus 128 ~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~ 205 (303)
T cd08251 128 TATGGTGLMAVQLARLKGAEIYATASSDDKLEYL-KQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEA-IQKG 205 (303)
T ss_pred cCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHH-HHHH
Confidence 6 59999999999999999999999999888888 8899998888765432 333333 7999999998755 8889
Q ss_pred HhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeec-----CC----HHHHHHHHHHHHhCCCcccE-EEEcccc
Q 018246 265 LGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNV-----GG----MKETQEMLDFCAKHNIAADI-ELVRMDQ 332 (359)
Q Consensus 265 ~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~-----~~----~~~~~~~~~~l~~g~i~~~~-~~~~l~~ 332 (359)
+++++++|+++.+|.... ...++... +.++..+..... .. .+.+.++++++.++.+++.. +.|++++
T Consensus 206 ~~~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 284 (303)
T cd08251 206 LNCLAPGGRYVEIAMTALKSAPSVDLSV-LSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDD 284 (303)
T ss_pred HHHhccCcEEEEEeccCCCccCccChhH-hhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHH
Confidence 999999999999875431 22333333 223333332221 11 13367788899999987654 8899999
Q ss_pred HHHHHHHHHcCCccEEEEE
Q 018246 333 INTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 333 ~~~a~~~~~~~~~~gkvvv 351 (359)
++++++.+.++...||+++
T Consensus 285 ~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 285 IGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred HHHHHHHHHhCCCcceEeC
Confidence 9999999998888888874
|
Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a |
| >cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-31 Score=242.84 Aligned_cols=295 Identities=24% Similarity=0.380 Sum_probs=236.2
Q ss_pred CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEecc
Q 018246 21 NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVL 99 (359)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~ 99 (359)
.+..+++.+.+.|.+++++|+|++.++++|++|+....|.++ ....|.++|||++|+|+.+|+++.++++||+|+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~- 88 (337)
T cd08275 10 GLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT- 88 (337)
T ss_pred CccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec-
Confidence 334577777777788999999999999999999998877653 234577899999999999999999999999997542
Q ss_pred ccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcC
Q 018246 100 VASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG 179 (359)
Q Consensus 100 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~ 179 (359)
..|+|++|+.++.+.++++|+++++++++.+.+...+||+++....
T Consensus 89 ----------------------------------~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~ 134 (337)
T cd08275 89 ----------------------------------RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELG 134 (337)
T ss_pred ----------------------------------CCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhh
Confidence 2388999999999999999999999999999999999999998888
Q ss_pred CCCCCCEEEEECC-chHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc-CCccEEEE
Q 018246 180 MTEPGKHLGVAGL-GGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM-GTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~-~~~d~vid 253 (359)
.+++|++|+|+|+ |.+|++++++|+.. +..++.. ..+++.+.+ +++|++.+++.+..+ .+.... .++|+++|
T Consensus 135 ~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~-~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 212 (337)
T cd08275 135 NLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGT-ASASKHEAL-KENGVTHVIDYRTQDYVEEVKKISPEGVDIVLD 212 (337)
T ss_pred CCCCCCEEEEEcCcchHHHHHHHHHHHccCcEEEEe-CCHHHHHHH-HHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEE
Confidence 8899999999997 99999999999998 3333322 234566766 789988888776432 233333 37999999
Q ss_pred CCCChhhHHHHHhccccCCEEEEecCCCCC-----------------eeeCHHHHHhcCcEEEEeecCCH--------HH
Q 018246 254 TVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-----------------LEVPIFALVGARRLVGGSNVGGM--------KE 308 (359)
Q Consensus 254 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----------------~~~~~~~~~~k~~~i~g~~~~~~--------~~ 308 (359)
++|+.. ...++++++++|+++.+|..... ..+.....+.++.++.++..... ..
T Consensus 213 ~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (337)
T cd08275 213 ALGGED-TRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEV 291 (337)
T ss_pred CCcHHH-HHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHH
Confidence 999875 88999999999999999864321 12223455678888888764311 23
Q ss_pred HHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 309 TQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 309 ~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.++++++.++.+++.. +.|++++++++++.+.++...||+++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 292 MDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred HHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 67788889999887655 7899999999999999888789999864
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=234.24 Aligned_cols=273 Identities=20% Similarity=0.271 Sum_probs=224.1
Q ss_pred CeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCC
Q 018246 38 DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYC 117 (359)
Q Consensus 38 ~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~ 117 (359)
+||+||+.++++|++|++...|.. ..+|.++|||++|+|+++|++++.+++||+|+...
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 589999999999999999988764 34577899999999999999999999999997542
Q ss_pred cccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEEC-CchHH
Q 018246 118 PNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLG 196 (359)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG 196 (359)
.|+|++|+.++.+.++++|+++++.+++.+++++.++|.++.....+++|++|+|+| .|.+|
T Consensus 60 -----------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g 122 (293)
T cd05195 60 -----------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVG 122 (293)
T ss_pred -----------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHH
Confidence 389999999999999999999999999999999999999998877779999999997 59999
Q ss_pred HHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC--CcEEecCCCHHH---HHHhc--CCccEEEECCCChhhHHHHHhccc
Q 018246 197 HVAVKIGKAFGLKVTVISTSPKKESEAISKLG--ADAFLVSSDPAK---VKAAM--GTMDYIIDTVSAVHSLAPLLGLLK 269 (359)
Q Consensus 197 ~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g--~~~v~~~~~~~~---~~~~~--~~~d~vid~~g~~~~~~~~~~~l~ 269 (359)
++++++|+..|++|+++++++++.+.+ ++++ ++.+++....+. +.+.. .++|++++++++.. +..++++++
T Consensus 123 ~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~ 200 (293)
T cd05195 123 QAAIQLAQHLGAEVFATVGSEEKREFL-RELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGEL-LRASWRCLA 200 (293)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHH-HHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCchH-HHHHHHhcc
Confidence 999999999999999999998888888 6676 677887765433 33333 27999999999884 999999999
Q ss_pred cCCEEEEecCCCCC--eeeCHHHHHhcCcEEEEeecCC---------HHHHHHHHHHHHhCCCcccE-EEEccccHHHHH
Q 018246 270 VNGKLVTVGLPEKP--LEVPIFALVGARRLVGGSNVGG---------MKETQEMLDFCAKHNIAADI-ELVRMDQINTAM 337 (359)
Q Consensus 270 ~~G~~v~~g~~~~~--~~~~~~~~~~k~~~i~g~~~~~---------~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~ 337 (359)
++|+++.+|..... ..++... +.++.++....... ...+..+++++.++++++.. ..++++++++++
T Consensus 201 ~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 279 (293)
T cd05195 201 PFGRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAF 279 (293)
T ss_pred cCceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHH
Confidence 99999999865421 2233322 34556655543321 13477888999999987654 789999999999
Q ss_pred HHHHcCCccEEEEE
Q 018246 338 ERLAKSDVKYRFVI 351 (359)
Q Consensus 338 ~~~~~~~~~gkvvv 351 (359)
+.+..+...+|+++
T Consensus 280 ~~~~~~~~~~~ivv 293 (293)
T cd05195 280 RLMQSGKHIGKVVL 293 (293)
T ss_pred HHHhcCCCCceecC
Confidence 99998887788774
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=231.33 Aligned_cols=268 Identities=20% Similarity=0.327 Sum_probs=219.6
Q ss_pred EEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccc
Q 018246 42 IKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMI 121 (359)
Q Consensus 42 V~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~ 121 (359)
||+.++++|++|++...|.++ .|.++|||++|+|+++|++++.+++||+|+...
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc-----------------------
Confidence 789999999999999877643 357899999999999999999999999997542
Q ss_pred cccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHH
Q 018246 122 LTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAV 200 (359)
Q Consensus 122 ~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~ 200 (359)
+|+|++|+.++.+.++++|+++++++++.+.+.+.++|.++.....+.+|++|+|+|+ |.+|++++
T Consensus 56 -------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~ 122 (288)
T smart00829 56 -------------PGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAI 122 (288)
T ss_pred -------------CCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHH
Confidence 3899999999999999999999999999999999999999877777799999999985 99999999
Q ss_pred HHHHHCCCeEEEEeCChhhHHHHHHHcCC--cEEecCCCHHH---HHHhcC--CccEEEECCCChhhHHHHHhccccCCE
Q 018246 201 KIGKAFGLKVTVISTSPKKESEAISKLGA--DAFLVSSDPAK---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGK 273 (359)
Q Consensus 201 ~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~~v~~~~~~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~ 273 (359)
++++..|++|+++++++++.+.+ +++|+ +.++++++.+. +..... ++|+++|++++.. +...+++++++|+
T Consensus 123 ~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~ 200 (288)
T smart00829 123 QLAQHLGAEVFATAGSPEKRDFL-RELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGEF-LDASLRCLAPGGR 200 (288)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHH-HHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHHH-HHHHHHhccCCcE
Confidence 99999999999999999999888 78997 77887665433 333332 7999999999754 8889999999999
Q ss_pred EEEecCCCC--CeeeCHHHHHhcCcEEEEeecC----C----HHHHHHHHHHHHhCCCccc-EEEEccccHHHHHHHHHc
Q 018246 274 LVTVGLPEK--PLEVPIFALVGARRLVGGSNVG----G----MKETQEMLDFCAKHNIAAD-IELVRMDQINTAMERLAK 342 (359)
Q Consensus 274 ~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~----~----~~~~~~~~~~l~~g~i~~~-~~~~~l~~~~~a~~~~~~ 342 (359)
++.+|.... ...++... +.++.++.+.... . ...+..+++++.++++.+. ++.|++++++++++.+..
T Consensus 201 ~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (288)
T smart00829 201 FVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQ 279 (288)
T ss_pred EEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhc
Confidence 999986531 22333333 3566666654432 1 1346778888989988764 488999999999999998
Q ss_pred CCccEEEEE
Q 018246 343 SDVKYRFVI 351 (359)
Q Consensus 343 ~~~~gkvvv 351 (359)
+...+|+++
T Consensus 280 ~~~~~~ivv 288 (288)
T smart00829 280 GKHIGKVVL 288 (288)
T ss_pred CCCcceEeC
Confidence 877788764
|
Enoylreductase in Polyketide synthases. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=220.57 Aligned_cols=248 Identities=25% Similarity=0.325 Sum_probs=199.0
Q ss_pred cCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCcc
Q 018246 59 NEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGY 138 (359)
Q Consensus 59 g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~ 138 (359)
|.++ ..+|.++|||++|+|+++|++++.+++||+|+.. +.|
T Consensus 14 ~~~~-~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~--------------------------------------~~~ 54 (277)
T cd08255 14 GTEK-LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF--------------------------------------GPH 54 (277)
T ss_pred cCcc-CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec--------------------------------------CCc
Confidence 4444 4478999999999999999999999999999732 468
Q ss_pred ceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCCh
Q 018246 139 SDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSP 217 (359)
Q Consensus 139 a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~ 217 (359)
++|++++.+.++++|+++++++++.+ +.+.|||+++. ...+++|++|+|+|+|.+|++++++|+++|++ |+++++++
T Consensus 55 ~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~ 132 (277)
T cd08255 55 AERVVVPANLLVPLPDGLPPERAALT-ALAATALNGVR-DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA 132 (277)
T ss_pred ceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH
Confidence 99999999999999999999998888 78999999986 45669999999999999999999999999997 99999999
Q ss_pred hhHHHHHHHcC-CcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCc
Q 018246 218 KKESEAISKLG-ADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARR 296 (359)
Q Consensus 218 ~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~ 296 (359)
++.+.+ +++| .+.+++..... .-..++|+++++++....+...+++++++|+++.+|............+..+.+
T Consensus 133 ~~~~~~-~~~g~~~~~~~~~~~~---~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~ 208 (277)
T cd08255 133 ARRELA-EALGPADPVAADTADE---IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRL 208 (277)
T ss_pred HHHHHH-HHcCCCccccccchhh---hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccC
Confidence 998866 8888 56665443211 012379999999887666889999999999999998765431112233444666
Q ss_pred EEEEeecCC------------HHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcC-CccEEEEE
Q 018246 297 LVGGSNVGG------------MKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKS-DVKYRFVI 351 (359)
Q Consensus 297 ~i~g~~~~~------------~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~-~~~gkvvv 351 (359)
++.+..... .+.++++++++.++.+++.. +.|+++++++||+.+.++ ....|+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 209 PIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred eEEeecccccccccccccccccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 777655432 14588999999999987655 889999999999999877 34477764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=201.78 Aligned_cols=283 Identities=17% Similarity=0.183 Sum_probs=221.9
Q ss_pred CCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCccc----ccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCc
Q 018246 33 RETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPG----HEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCE 107 (359)
Q Consensus 33 ~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G----~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~ 107 (359)
.++++++||||..+.+..|.-...++-..+. ...|..+| ..++|+|++. ..+.+++||.|...
T Consensus 33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g~---------- 100 (343)
T KOG1196|consen 33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWGI---------- 100 (343)
T ss_pred CCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEEe----------
Confidence 4568999999999999987655444321111 12233333 2679999994 56789999999622
Q ss_pred cccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc--eEECCC--CCCcccc-ccccchhhhhhhHhHhcCCCC
Q 018246 108 SCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY--VLRFPD--NMPLDAG-APLLCAGITVYSPMKYYGMTE 182 (359)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~--~~~lp~--~l~~~~a-a~l~~~~~ta~~~l~~~~~~~ 182 (359)
-+|.||.+++... .++++. ..++... ..+..+.+|||..+++....+
T Consensus 101 ----------------------------~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk 152 (343)
T KOG1196|consen 101 ----------------------------VGWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPK 152 (343)
T ss_pred ----------------------------ccceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCC
Confidence 3799999997653 555554 3444333 478889999999999999989
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH----HHHhc-CCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK----VKAAM-GTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~-~~~d~vid~~g 256 (359)
+|++|+|.|| |++|+++.|+|+.+|++|+.++.++|+...+..+||.+..+||+++.. +++.. .++|+.||.+|
T Consensus 153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVG 232 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVG 232 (343)
T ss_pred CCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccC
Confidence 9999999876 999999999999999999999999999999988899999999988732 22222 39999999999
Q ss_pred ChhhHHHHHhccccCCEEEEecCCCC---Cee---eCHHHHHhcCcEEEEeecCCHHH-----HHHHHHHHHhCCCcccE
Q 018246 257 AVHSLAPLLGLLKVNGKLVTVGLPEK---PLE---VPIFALVGARRLVGGSNVGGMKE-----TQEMLDFCAKHNIAADI 325 (359)
Q Consensus 257 ~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~---~~~~~~~~k~~~i~g~~~~~~~~-----~~~~~~~l~~g~i~~~~ 325 (359)
+.. ++..+..|+..||++.+|..+. ..+ .+....+.|.+++.|+......+ ++.+..++++|+|+-.-
T Consensus 233 G~~-lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~e 311 (343)
T KOG1196|consen 233 GKM-LDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVE 311 (343)
T ss_pred cHH-HHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEeh
Confidence 988 9999999999999999997663 111 23456678999999977655433 67888899999997655
Q ss_pred E-EEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 326 E-LVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 326 ~-~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+ .-.|+..++||..|.++++.||-++.+..|
T Consensus 312 di~~Glen~P~A~vglf~GkNvGKqiv~va~E 343 (343)
T KOG1196|consen 312 DIADGLENGPSALVGLFHGKNVGKQLVKVARE 343 (343)
T ss_pred hHHHHHhccHHHHHHHhccCcccceEEEeecC
Confidence 3 337999999999999999999999998753
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=235.68 Aligned_cols=290 Identities=16% Similarity=0.215 Sum_probs=238.4
Q ss_pred CCCCccceeeecC---CCCCCeEEEEEeeeecchhhhhhhccCCCCCCCC-------CcccccccEEEEEeCCCCCCCCC
Q 018246 21 NTGTFSPFHFSRR---ETGADDVTIKILFCGICHSDLHCARNEWGVTNYP-------IVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 21 ~~~~~~~~~~~~~---~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p-------~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
.-.+++|.+.+.. +..++.-+--|-|+.||++|+.+..|..+....| ..+|-|++|+ .+-
T Consensus 1425 DlsSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~ 1494 (2376)
T KOG1202|consen 1425 DLSSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DAS 1494 (2376)
T ss_pred cccceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCC
Confidence 3445667666654 3467778899999999999999999987654443 4678888887 345
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
|.||+.+. +--++++-+.++.+++|.+|+...+++|++.|+.+.|
T Consensus 1495 GrRvM~mv-----------------------------------pAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsT 1539 (2376)
T KOG1202|consen 1495 GRRVMGMV-----------------------------------PAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYST 1539 (2376)
T ss_pred CcEEEEee-----------------------------------ehhhhhhhhhcchhhhhhCCcccchhhcccCceEeee
Confidence 99998664 2367899999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEE-CCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC---CcEEecCCCHHH---HHH
Q 018246 171 VYSPMKYYGMTEPGKHLGVA-GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG---ADAFLVSSDPAK---VKA 243 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~-G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g---~~~v~~~~~~~~---~~~ 243 (359)
||+++...++.++|++|||+ |+|++|++|+.+|.+.|.+|+-++.+.|+++++.+.|+ .+++-|+++.++ +.+
T Consensus 1540 aYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~ 1619 (2376)
T KOG1202|consen 1540 AYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLW 1619 (2376)
T ss_pred ehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHH
Confidence 99999999999999999998 57999999999999999999999999999999988888 467777776433 334
Q ss_pred hcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCC--CCeeeCHHHHHhcCcEEEEeec-----CCHHHHHHHHH
Q 018246 244 AMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE--KPLEVPIFALVGARRLVGGSNV-----GGMKETQEMLD 314 (359)
Q Consensus 244 ~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~k~~~i~g~~~-----~~~~~~~~~~~ 314 (359)
.++ |+|+|++....+. +..+++||+.+||+..+|-.. .+-++.+. .+.||.+++|..+ +..+++.++..
T Consensus 1620 ~T~GrGVdlVLNSLaeEk-LQASiRCLa~~GRFLEIGKfDLSqNspLGMa-vfLkNvsfHGiLLDsvmege~e~~~ev~~ 1697 (2376)
T KOG1202|consen 1620 HTKGRGVDLVLNSLAEEK-LQASIRCLALHGRFLEIGKFDLSQNSPLGMA-VFLKNVSFHGILLDSVMEGEEEMWREVAA 1697 (2376)
T ss_pred HhcCCCeeeehhhhhHHH-HHHHHHHHHhcCeeeeecceecccCCcchhh-hhhcccceeeeehhhhhcCcHHHHHHHHH
Confidence 443 8999999999988 999999999999999998654 23334444 4579999999665 33466777777
Q ss_pred HHHhC----CCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCCc
Q 018246 315 FCAKH----NIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNSK 357 (359)
Q Consensus 315 ~l~~g----~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~ 357 (359)
++++| ..+|.. ++|+-.++++||++|.++++.||||+++..|.
T Consensus 1698 Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr~eE 1745 (2376)
T KOG1202|consen 1698 LVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVRAEE 1745 (2376)
T ss_pred HHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEcccc
Confidence 77665 445544 89999999999999999999999999998763
|
|
| >PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-24 Score=162.27 Aligned_cols=108 Identities=36% Similarity=0.661 Sum_probs=93.5
Q ss_pred CCeEEEEEeeeecchhhhhhhccC-CCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCC
Q 018246 37 ADDVTIKILFCGICHSDLHCARNE-WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLEN 115 (359)
Q Consensus 37 ~~eVlV~v~~~~i~~~D~~~~~g~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~ 115 (359)
|+||||||+++|||++|+++++|. ......|.++|||++|+|+++|++++.|++||||++.+.. .|..|.+|+.+.++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~c~~~~~~ 79 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNI-GCGECEYCLSGRPN 79 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEE-ETSSSHHHHTTTGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeeccc-CccCchhhcCCccc
Confidence 789999999999999999999983 4567889999999999999999999999999999886665 69999999999999
Q ss_pred CCcccccccccccCCCCCCCCccceEEEeeCCceEEC
Q 018246 116 YCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~l 152 (359)
.|.+.... |...+|+|+||+++|+++++|+
T Consensus 80 ~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 80 LCPNPEVL-------GLGLDGGFAEYVVVPARNLVPV 109 (109)
T ss_dssp GTTTBEET-------TTSSTCSSBSEEEEEGGGEEEE
T ss_pred cCCCCCEe-------EcCCCCcccCeEEEehHHEEEC
Confidence 99876544 3347799999999999999985
|
1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A .... |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=130.23 Aligned_cols=124 Identities=31% Similarity=0.465 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEECCCChhhHHHHHhcc
Q 018246 194 GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAMG--TMDYIIDTVSAVHSLAPLLGLL 268 (359)
Q Consensus 194 ~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l 268 (359)
++|++++|+|++.|++|+++++++++++.+ +++|+++++++++.+ .+.++++ ++|+||||+|+..+++.+++++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~-~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l 79 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELA-KELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL 79 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHH-HhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence 689999999999999999999999999888 899999999988753 4555554 6999999999878799999999
Q ss_pred ccCCEEEEecCCC-CCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHh
Q 018246 269 KVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318 (359)
Q Consensus 269 ~~~G~~v~~g~~~-~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~ 318 (359)
+++|+++.+|... ...+++...++.+++++.|+..++.++++++++++++
T Consensus 80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~la~ 130 (130)
T PF00107_consen 80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQLLAQ 130 (130)
T ss_dssp EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHHHH-
T ss_pred ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHHhcC
Confidence 9999999999988 6789999999999999999999999999999999864
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=128.90 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=137.3
Q ss_pred hhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
|.++.+. +..-+|++|+|.|.|++|+.+++.++..|++|+++++++.|.+.+ +.+|++.+. . .+...+.|+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-~~~G~~~~~-~------~e~v~~aDV 260 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-AMEGYEVMT-M------EEAVKEGDI 260 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-HhcCCEEcc-H------HHHHcCCCE
Confidence 4555443 444689999999999999999999999999999999999998888 788985432 1 233357899
Q ss_pred EEECCCChhhHHHH-HhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHH-HHH--HHHHHHHhCCC-cc--
Q 018246 251 IIDTVSAVHSLAPL-LGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMK-ETQ--EMLDFCAKHNI-AA-- 323 (359)
Q Consensus 251 vid~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~-~~~--~~~~~l~~g~i-~~-- 323 (359)
|++|+|...+++.. ++.++++|.++.+|.. ..+++...+..+++++.++..+... +|. +.+.++.+|++ ..
T Consensus 261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~ 338 (413)
T cd00401 261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGC 338 (413)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCcc
Confidence 99999998878765 9999999999999965 4678888888899999988776433 455 79999999998 32
Q ss_pred cE-EE-----Eccc-cHHHHHHHHHcCCcc-EEEEEEcC
Q 018246 324 DI-EL-----VRMD-QINTAMERLAKSDVK-YRFVIDVG 354 (359)
Q Consensus 324 ~~-~~-----~~l~-~~~~a~~~~~~~~~~-gkvvv~~~ 354 (359)
.+ |. ++|+ |+.++++.+.++... -|+++.++
T Consensus 339 ~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 339 ATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred cCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 22 55 7899 999999999876542 46666544
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-14 Score=111.75 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=80.0
Q ss_pred cCCcEEecCCCHHHHHHhcCCccEEEECCC--ChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecC
Q 018246 227 LGADAFLVSSDPAKVKAAMGTMDYIIDTVS--AVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVG 304 (359)
Q Consensus 227 ~g~~~v~~~~~~~~~~~~~~~~d~vid~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~ 304 (359)
+|+++++|++..+. .-.+++|+|||++| +...+..++++| ++|+++.++. .........+...+.+....
T Consensus 1 LGAd~vidy~~~~~--~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~ 72 (127)
T PF13602_consen 1 LGADEVIDYRDTDF--AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLF 72 (127)
T ss_dssp CT-SEEEETTCSHH--HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC
T ss_pred CCcCEEecCCCccc--cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEE
Confidence 68999999996555 22459999999999 666457778888 9999999974 11111111223333333332
Q ss_pred -------CHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEE
Q 018246 305 -------GMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVI 351 (359)
Q Consensus 305 -------~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv 351 (359)
..+.++++++++++|++++.+ ++|||+++.+|++.+.+++..||+||
T Consensus 73 ~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 73 SVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp -H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred ecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 124499999999999999998 69999999999999999999999997
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-12 Score=120.27 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=109.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCH-------------HHH---HHh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDP-------------AKV---KAA 244 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~-------------~~~---~~~ 244 (359)
.++++|+|+|+|++|+++++.|+.+|++|++++.+++|++.+ +++|++.+ ++..+. +.. .+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a-eslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV-ESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 689999999999999999999999999999999999999988 88999854 554321 111 111
Q ss_pred ----cCCccEEEECCCCh-----hhH-HHHHhccccCCEEEEecCCC-CC--eeeCHHHHHh-cCcEEEEeecCCHHHHH
Q 018246 245 ----MGTMDYIIDTVSAV-----HSL-APLLGLLKVNGKLVTVGLPE-KP--LEVPIFALVG-ARRLVGGSNVGGMKETQ 310 (359)
Q Consensus 245 ----~~~~d~vid~~g~~-----~~~-~~~~~~l~~~G~~v~~g~~~-~~--~~~~~~~~~~-k~~~i~g~~~~~~~~~~ 310 (359)
.+++|+||+|++.+ ..+ +..++.++++|+++++|... +. .+.+...++. +++++.|......+...
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~ 321 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPT 321 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHH
Confidence 14799999999963 343 89999999999999999853 33 4455556665 89999998765544344
Q ss_pred HHHHHHHhCCCcc
Q 018246 311 EMLDFCAKHNIAA 323 (359)
Q Consensus 311 ~~~~~l~~g~i~~ 323 (359)
++.+++.++.++.
T Consensus 322 ~As~lla~~~i~l 334 (509)
T PRK09424 322 QSSQLYGTNLVNL 334 (509)
T ss_pred HHHHHHHhCCccH
Confidence 6899999988753
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-08 Score=86.97 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=101.4
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHH---cCCcEEecCCCHHHHHHh---cCCccEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISK---LGADAFLVSSDPAKVKAA---MGTMDYI 251 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~---~~~~d~v 251 (359)
.+++|++||.+|+|. |..+.++++..|. +|++++.+++.++.+.+. ++...+-.... .+..+ .+.+|+|
T Consensus 74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~--d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLG--EIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEc--chhhCCCCCCceeEE
Confidence 358999999999988 8888888888775 799999999988877332 34322211111 12222 1379999
Q ss_pred EECC------CChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcc--
Q 018246 252 IDTV------SAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAA-- 323 (359)
Q Consensus 252 id~~------g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~-- 323 (359)
+... .....+..+.+.|+|+|+++..+..... +++ ..+.+...+.+.........+++.+++++..+..
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-ELP--EEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-CCC--HHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 8543 2234689999999999999987654321 111 1122222222222222233456667777654432
Q ss_pred -cE-EEEccccHHHHHHHH--HcCCccEEEE
Q 018246 324 -DI-ELVRMDQINTAMERL--AKSDVKYRFV 350 (359)
Q Consensus 324 -~~-~~~~l~~~~~a~~~~--~~~~~~gkvv 350 (359)
.. ..++++++.++++.+ .++...++.+
T Consensus 228 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 258 (272)
T PRK11873 228 IQPKREYRIPDAREFLEDWGIAPGRQLDGYI 258 (272)
T ss_pred EEeccceecccHHHHHHHhccccccccCceE
Confidence 22 567899999999988 5544444444
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.5e-07 Score=85.08 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=84.2
Q ss_pred hhhhhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCC
Q 018246 169 ITVYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 169 ~ta~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~ 247 (359)
..+|.++... ...-.|++|+|+|.|.+|+.+++.++.+|++|+++++++.+...+ ...|+. +.+ +.++..+
T Consensus 196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-~~~G~~-v~~------l~eal~~ 267 (425)
T PRK05476 196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-AMDGFR-VMT------MEEAAEL 267 (425)
T ss_pred hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-HhcCCE-ecC------HHHHHhC
Confidence 4456666666 333489999999999999999999999999999999998887666 455654 221 2334458
Q ss_pred ccEEEECCCChhhHH-HHHhccccCCEEEEecCCCCC
Q 018246 248 MDYIIDTVSAVHSLA-PLLGLLKVNGKLVTVGLPEKP 283 (359)
Q Consensus 248 ~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~ 283 (359)
+|+|++++|....++ ..+..|++++.++.+|.....
T Consensus 268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~E 304 (425)
T PRK05476 268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNE 304 (425)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCc
Confidence 999999999887675 688999999999999876643
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=88.12 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=86.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCC-------------HHH-------
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSD-------------PAK------- 240 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~-------------~~~------- 240 (359)
.++++|+|+|+|.+|++++++++.+|++|+++++++++++.+ +++|++.+ ++..+ .+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999888 78998763 22211 111
Q ss_pred HHHhcCCccEEEECC---CChh---hHHHHHhccccCCEEEEecCCCC-CeeeC--HHHHH-hcCcEEEEeec
Q 018246 241 VKAAMGTMDYIIDTV---SAVH---SLAPLLGLLKVNGKLVTVGLPEK-PLEVP--IFALV-GARRLVGGSNV 303 (359)
Q Consensus 241 ~~~~~~~~d~vid~~---g~~~---~~~~~~~~l~~~G~~v~~g~~~~-~~~~~--~~~~~-~k~~~i~g~~~ 303 (359)
..+...++|++|+|+ |.+. +.+..++.|++|+.+++++...+ +..+. ...+. ..++++.+...
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~n 313 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYTD 313 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeCC
Confidence 122234899999999 5432 56788999999999999976553 33222 11111 13477776444
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.2e-07 Score=79.93 Aligned_cols=120 Identities=17% Similarity=0.196 Sum_probs=89.5
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEE
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid 253 (359)
++.....--.+++|+|+|.|.+|+.+++.++.+|++|++.++++++.+.+ +++|.+.+. .+.+.+...++|+||+
T Consensus 142 a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-~~~G~~~~~----~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 142 AIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-TEMGLSPFH----LSELAEEVGKIDIIFN 216 (296)
T ss_pred HHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCeeec----HHHHHHHhCCCCEEEE
Confidence 33333332368999999999999999999999999999999998887777 778876432 1234455568999999
Q ss_pred CCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEE
Q 018246 254 TVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300 (359)
Q Consensus 254 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g 300 (359)
+++........++.+++++.+++++...+...+. ..-.++++..+
T Consensus 217 t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~~--~a~~~Gv~~~~ 261 (296)
T PRK08306 217 TIPALVLTKEVLSKMPPEALIIDLASKPGGTDFE--YAEKRGIKALL 261 (296)
T ss_pred CCChhhhhHHHHHcCCCCcEEEEEccCCCCcCee--ehhhCCeEEEE
Confidence 9987654567788999999999998876554442 23335556654
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-06 Score=80.10 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=80.8
Q ss_pred hhhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 018246 171 VYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 171 a~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d 249 (359)
++.++.+. .....|++|+|+|.|.+|+.+++.++.+|++|++++.++.+...+ ...|+. +.+. .+...+.|
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~~~G~~-v~~l------eeal~~aD 252 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-AMDGFR-VMTM------EEAAKIGD 252 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-HhcCCE-eCCH------HHHHhcCC
Confidence 34555444 334689999999999999999999999999999999998887666 566763 2221 22335789
Q ss_pred EEEECCCChhhHH-HHHhccccCCEEEEecCCC
Q 018246 250 YIIDTVSAVHSLA-PLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 250 ~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~ 281 (359)
++|+++|....++ ..+..+++++.++.+|...
T Consensus 253 VVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 253 IFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 9999999988776 4899999999999998764
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-06 Score=79.30 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCC---C--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVS---A-- 257 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g---~-- 257 (359)
++.+|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.++........+.+.+.+....+|++|++++ .
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 34569999999999999999999999999999999988887566765433334444556666678999999973 2
Q ss_pred hh-hHHHHHhccccCCEEEEecCCC
Q 018246 258 VH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 258 ~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+. .....++.+++++.+++++...
T Consensus 246 p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEEEecCC
Confidence 22 2367888899999999998654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-08 Score=95.06 Aligned_cols=163 Identities=15% Similarity=0.211 Sum_probs=106.4
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc
Q 018246 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~ 148 (359)
--|.|+++.+.+|++++++ +|++.+.. |+.|.+| ++.|...... |...++.|++++.++. .
T Consensus 89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI--~gQvk~a----~~~a~~~~~~-------g~~l~~lf~~a~~~~k-~ 149 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDS-----MVVGETQI--LGQVKNA----YKVAQEEKTV-------GKVLERLFQKAFSVGK-R 149 (417)
T ss_pred cCchHHHHHHHHHHhhhhh-----hhcCChHH--HHHHHHH----HHHHHHcCCc-------hHHHHHHHHHHHHHhh-h
Confidence 4689999999999999887 44444443 6666666 5556555433 3345688999988875 3
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL 227 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~ 227 (359)
+.. -..++ .. .++.+..+.-.+....+. .++++|+|+|+|.+|..+++.++..|+ +|++++++.++.+.+.+++
T Consensus 150 vr~-~t~i~-~~--~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~ 224 (417)
T TIGR01035 150 VRT-ETDIS-AG--AVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL 224 (417)
T ss_pred hhh-hcCCC-CC--CcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 332 01111 01 111111111112222333 578999999999999999999999995 8999999998877666778
Q ss_pred CCcEEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 228 GADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 228 g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
|...+ +. +.+.+...++|+||.|++.+.
T Consensus 225 g~~~i-~~---~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 225 GGEAV-KF---EDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCeEe-eH---HHHHHHHhhCCEEEECCCCCC
Confidence 76432 22 233444458999999998765
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.2e-06 Score=79.69 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred hhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+.++.+. ...-.|++|+|+|.|.+|+.+++.++.+|++|+++++++.+...+ ...|+..+ + +.++....|+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv-~------leEal~~ADV 312 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVL-T------LEDVVSEADI 312 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeec-c------HHHHHhhCCE
Confidence 4454444 333679999999999999999999999999999999988776565 55676532 1 2233456899
Q ss_pred EEECCCChhhH-HHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAVHSL-APLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~ 281 (359)
++.+.|....+ ...++.|++++.++.+|...
T Consensus 313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred EEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence 99999988754 78999999999999998754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.5e-06 Score=72.37 Aligned_cols=129 Identities=21% Similarity=0.296 Sum_probs=83.2
Q ss_pred cceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC
Q 018246 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS 216 (359)
Q Consensus 138 ~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~ 216 (359)
|.+|.. +...++.+++++++..+.. +.+.. .+..+... ..++++||.+|+|. |..++.+++ .|+ +|++++.+
T Consensus 79 ~~~~~~-~~~~~i~i~p~~afgtg~h-~tt~~-~l~~l~~~--~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis 151 (250)
T PRK00517 79 WEDPPD-PDEINIELDPGMAFGTGTH-PTTRL-CLEALEKL--VLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDID 151 (250)
T ss_pred CcCCCC-CCeEEEEECCCCccCCCCC-HHHHH-HHHHHHhh--cCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECC
Confidence 555544 6778899999988887642 21111 12233322 36889999999987 877776554 677 69999999
Q ss_pred hhhHHHHHHHc---CC-cEEecCCCHHHHHHhcCCccEEEECCCChh---hHHHHHhccccCCEEEEecCC
Q 018246 217 PKKESEAISKL---GA-DAFLVSSDPAKVKAAMGTMDYIIDTVSAVH---SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 217 ~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+...+.+.+.. +. ..+..... ...||+|+.+..... .+..+.+.|+++|.++..|..
T Consensus 152 ~~~l~~A~~n~~~~~~~~~~~~~~~-------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 152 PQAVEAARENAELNGVELNVYLPQG-------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHHHHHHHHcCCCceEEEccC-------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 99887774332 22 11110000 015899987665432 356788899999999987654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-07 Score=90.56 Aligned_cols=121 Identities=20% Similarity=0.176 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCC---------------------hhhHHHHHHHcCCcEEecCCC-H
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS---------------------PKKESEAISKLGADAFLVSSD-P 238 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~---------------------~~~~~~~~~~~g~~~v~~~~~-~ 238 (359)
..+|++|+|+|+|++|+++++.++..|++|+++++. +.+++.+ +++|++..++... .
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~-~~~Gv~~~~~~~~~~ 212 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRI-LDLGVEVRLGVRVGE 212 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHH-HHCCCEEEeCCEECC
Confidence 478999999999999999999999999999999853 2345556 6899877666432 1
Q ss_pred H-HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeec
Q 018246 239 A-KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNV 303 (359)
Q Consensus 239 ~-~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~ 303 (359)
+ .......++|+||+++|........+......|.+..++......... .....+++.+.|...
T Consensus 213 ~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-~~~~gk~v~ViGgg~ 277 (564)
T PRK12771 213 DITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-PPFLGKRVVVIGGGN 277 (564)
T ss_pred cCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-CcCCCCCEEEECChH
Confidence 1 122333479999999998653343444455556555443322111111 122356677776443
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-05 Score=70.10 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=82.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|++++|+|.|.+|.+++..++.+|++|++.++++++.+.+ .++|...+ . .+.+.+...+.|+|+++++....-
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-~~~g~~~~-~---~~~l~~~l~~aDiVint~P~~ii~ 223 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-TEMGLIPF-P---LNKLEEKVAEIDIVINTIPALVLT 223 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeee-c---HHHHHHHhccCCEEEECCChHHhC
Confidence 368899999999999999999999999999999998887766 56665432 1 223445556899999999765423
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEE
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVG 299 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~ 299 (359)
...++.++++..+++++...+...| ...-.++++..
T Consensus 224 ~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 224 ADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred HHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 5677889999999999887655444 33223444444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.9e-06 Score=76.58 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=80.5
Q ss_pred CceEECCCCCCccccccccchhhhhhhHhHhcCCC---CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHH
Q 018246 147 HYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT---EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESE 222 (359)
Q Consensus 147 ~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~---~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~ 222 (359)
...+++|+.+..+.++... +...++.++...... -++.+|+|+|+|.+|+.+++.++..|+ +|+++++++++.+.
T Consensus 139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4567888988888876543 334445566544331 378999999999999999999998886 89999999998777
Q ss_pred HHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 223 AISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 223 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
+.+++|.. +++. +.+.+.....|+||.|++.+..
T Consensus 218 la~~~g~~-~~~~---~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 218 LAKELGGN-AVPL---DELLELLNEADVVISATGAPHY 251 (311)
T ss_pred HHHHcCCe-EEeH---HHHHHHHhcCCEEEECCCCCch
Confidence 76888874 3322 2233444578999999998773
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=74.06 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=77.8
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+..+..-.|++|+|+|.|.+|..+++.++.+|++|+++++++.+...+ ...|+..+ .+.++....|+|+.+.
T Consensus 246 R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-~~~G~~~~-------~leell~~ADIVI~at 317 (476)
T PTZ00075 246 RATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-AMEGYQVV-------TLEDVVETADIFVTAT 317 (476)
T ss_pred HhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-HhcCceec-------cHHHHHhcCCEEEECC
Confidence 333444689999999999999999999999999999998887776555 34565432 1334456899999999
Q ss_pred CChhhHH-HHHhccccCCEEEEecCCC
Q 018246 256 SAVHSLA-PLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 256 g~~~~~~-~~~~~l~~~G~~v~~g~~~ 281 (359)
|....++ ..+..|++++.++.+|...
T Consensus 318 Gt~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 318 GNKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred CcccccCHHHHhccCCCcEEEEcCCCc
Confidence 9877664 8999999999999998764
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.2e-05 Score=64.93 Aligned_cols=105 Identities=20% Similarity=0.331 Sum_probs=75.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----cEEecCCCHHHH----HHh---cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----DAFLVSSDPAKV----KAA---MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~~v~~~~~~~~~----~~~---~~~~d~ 250 (359)
.++.++|.|+ +++|.+.++.....|++|+.++|..+|++.+..+++. ...+|-++.+.+ ..+ .+.+|+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 4578899997 9999999999999999999999999999999889983 234565665432 222 247999
Q ss_pred EEECCCChh-------------------------hHHHHHhcc--ccCCEEEEecCCCCCeeeC
Q 018246 251 IIDTVSAVH-------------------------SLAPLLGLL--KVNGKLVTVGLPEKPLEVP 287 (359)
Q Consensus 251 vid~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~~~~~~~ 287 (359)
.+++.|... ..+..+..| +..|.++.+|+..+..+++
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~ 148 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYP 148 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCC
Confidence 999998531 111222222 3468999998877544443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.07 E-value=8e-06 Score=64.93 Aligned_cols=96 Identities=18% Similarity=0.316 Sum_probs=68.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
-.+.+++|+|+|++|.+++..+...|+ +|+++.|+.+|.+.+.++++.. .+++.++ +.+....+|++|+|++..
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEALQEADIVINATPSG 86 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHHHTESEEEE-SSTT
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHHhhCCeEEEecCCC
Confidence 368899999999999999999999999 6999999999999988888532 3344433 223345799999999876
Q ss_pred hh--HHHHHhcccc-CCEEEEecCC
Q 018246 259 HS--LAPLLGLLKV-NGKLVTVGLP 280 (359)
Q Consensus 259 ~~--~~~~~~~l~~-~G~~v~~g~~ 280 (359)
+. -...+....+ -+.+++++.+
T Consensus 87 ~~~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 87 MPIITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp STSSTHHHHTTTCHHCSEEEES-SS
T ss_pred CcccCHHHHHHHHhhhhceeccccC
Confidence 41 1233333322 2578888654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.4e-05 Score=78.21 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=89.4
Q ss_pred CccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEe
Q 018246 136 GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIS 214 (359)
Q Consensus 136 g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~ 214 (359)
-++++|..+|+..++.+ +..+.+++...... ....-+|+++||.|+ |++|+.+++.+...|++|++++
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~ 453 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD 453 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence 45567777777777766 55565665311000 111136789999985 9999999999999999999999
Q ss_pred CChhhHHHHHHHcCC-----cEEecCCCHHHHHHh-------cCCccEEEECCCCh------------------------
Q 018246 215 TSPKKESEAISKLGA-----DAFLVSSDPAKVKAA-------MGTMDYIIDTVSAV------------------------ 258 (359)
Q Consensus 215 ~~~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~-------~~~~d~vid~~g~~------------------------ 258 (359)
+++++.+.+.+.++. ....|..+.+.+.++ .+++|++|+++|..
T Consensus 454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~ 533 (681)
T PRK08324 454 LDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGH 533 (681)
T ss_pred CCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHH
Confidence 999887776555543 122355555433332 24799999999831
Q ss_pred -hhHHHHHhcccc---CCEEEEecCCC
Q 018246 259 -HSLAPLLGLLKV---NGKLVTVGLPE 281 (359)
Q Consensus 259 -~~~~~~~~~l~~---~G~~v~~g~~~ 281 (359)
..++.+.+.++. +|+++.++...
T Consensus 534 ~~l~~~~~~~l~~~~~~g~iV~vsS~~ 560 (681)
T PRK08324 534 FLVAREAVRIMKAQGLGGSIVFIASKN 560 (681)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence 123444556655 68999987644
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=69.33 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=101.3
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc
Q 018246 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~ 148 (359)
--|+|+++.+.+|++++++.-+|+.= .|.+|+ +.++.|...... |...++.|++.+.++
T Consensus 91 ~~g~ea~~hl~~V~~GldS~V~GE~q----------IlgQvk-~a~~~a~~~g~~-------g~~l~~lf~~a~~~~--- 149 (423)
T PRK00045 91 HEGEEAVRHLFRVASGLDSMVLGEPQ----------ILGQVK-DAYALAQEAGTV-------GTILNRLFQKAFSVA--- 149 (423)
T ss_pred cCCHHHHHHHHHHHhhhhhhhcCChH----------HHHHHH-HHHHHHHHcCCc-------hHHHHHHHHHHHHHH---
Confidence 36999999999999998874444432 245555 223333333211 222345666555444
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcCC---CCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHH
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM---TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAI 224 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~ 224 (359)
+.+..+.+. ...+...++.++..... -.++++|+|+|+|.+|.++++.++..|+ +|+++++++++.+.+.
T Consensus 150 -----k~v~~~t~i-~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la 223 (423)
T PRK00045 150 -----KRVRTETGI-GAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELA 223 (423)
T ss_pred -----hhHhhhcCC-CCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence 332222221 11123333445543322 1578999999999999999999999998 8999999999987676
Q ss_pred HHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 225 SKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 225 ~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
+++|.+ +++. +...+...++|+||+|++.+.
T Consensus 224 ~~~g~~-~~~~---~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 224 EEFGGE-AIPL---DELPEALAEADIVISSTGAPH 254 (423)
T ss_pred HHcCCc-EeeH---HHHHHHhccCCEEEECCCCCC
Confidence 888864 3322 223344468999999998765
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00023 Score=62.76 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=79.6
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCC--C----h
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVS--A----V 258 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g--~----~ 258 (359)
.+|.|+|.|.+|.-++.+|.-+|++|++.+.+.+|++.+-..|+.+--.-++....+++...+.|++|.++= + .
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk 248 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK 248 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence 458888999999999999999999999999999999999666776533345667778888889999998662 1 1
Q ss_pred hhHHHHHhccccCCEEEEecCCCC
Q 018246 259 HSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 259 ~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
...+..++.|+|++.++++...++
T Consensus 249 Lvt~e~vk~MkpGsVivDVAiDqG 272 (371)
T COG0686 249 LVTREMVKQMKPGSVIVDVAIDQG 272 (371)
T ss_pred ehhHHHHHhcCCCcEEEEEEEcCC
Confidence 256788999999999999976553
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00042 Score=64.22 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=79.1
Q ss_pred CEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcC--C-cEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLG--A-DAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g--~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
.+|||+|+|.+|+.+++.+.+.| .+|++.+|+.++.+.+....+ . ...+|-.+.+.+.++..++|+||++.+....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 46999999999999999988888 599999999999888844332 2 4567777777788888888999999998876
Q ss_pred HHHHHhccccCCEEEEecCCCCC
Q 018246 261 LAPLLGLLKVNGKLVTVGLPEKP 283 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~~~~~ 283 (359)
+..+-.|++.+=.+++.......
T Consensus 82 ~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 82 LTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred HHHHHHHHHhCCCEEEcccCCch
Confidence 66666777888888888665433
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00094 Score=56.79 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=68.3
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHH---HHcC-CcE--EecCCCHHHHHHhcCCccEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAI---SKLG-ADA--FLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~---~~~g-~~~--v~~~~~~~~~~~~~~~~d~v 251 (359)
.+.++++||.+|+|. |.+++.+++..+ .+|++++.+++..+.+. +.+| .+. ++..+..+.+....+.+|.|
T Consensus 37 ~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 37 RLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence 348999999999988 888899988764 48999999998877652 3455 222 22222223333444589999
Q ss_pred EECCCC---hhhHHHHHhccccCCEEEEe
Q 018246 252 IDTVSA---VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 id~~g~---~~~~~~~~~~l~~~G~~v~~ 277 (359)
+...+. ...+..+.+.|+|+|+++..
T Consensus 116 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 116 FIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 986543 23577888999999999853
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=54.83 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=68.2
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHH---HHHcCCc--EEecCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEA---ISKLGAD--AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~---~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+++|+.++-+|+|. |..++++|+.. ..+|+++++++++.+.. +++||.+ .++..+.++.+..+. .+|.+|--
T Consensus 32 ~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIG 109 (187)
T COG2242 32 PRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIG 109 (187)
T ss_pred CCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEEC
Confidence 48999887788753 55667777443 34999999999876554 4578866 455555555555433 79999975
Q ss_pred CCCh--hhHHHHHhccccCCEEEEec
Q 018246 255 VSAV--HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 255 ~g~~--~~~~~~~~~l~~~G~~v~~g 278 (359)
-|.. ..++.++..|+++|++|.-.
T Consensus 110 Gg~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 110 GGGNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence 5532 36789999999999998753
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00066 Score=54.91 Aligned_cols=103 Identities=19% Similarity=0.304 Sum_probs=71.5
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
....-.|++++|.|-|.+|...++.++.+|++|++++.++-+.-++ .--|.... .+.++....|+++.++|.
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-~~dGf~v~-------~~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-AMDGFEVM-------TLEEALRDADIFVTATGN 88 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-HHTT-EEE--------HHHHTTT-SEEEE-SSS
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-hhcCcEec-------CHHHHHhhCCEEEECCCC
Confidence 3455689999999999999999999999999999999999887666 34454422 245566788999999998
Q ss_pred hhhH-HHHHhccccCCEEEEecCCCCCeeeCHHH
Q 018246 258 VHSL-APLLGLLKVNGKLVTVGLPEKPLEVPIFA 290 (359)
Q Consensus 258 ~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~ 290 (359)
..++ ..-++.|+++..+..+|... ..+++..
T Consensus 89 ~~vi~~e~~~~mkdgail~n~Gh~d--~Eid~~~ 120 (162)
T PF00670_consen 89 KDVITGEHFRQMKDGAILANAGHFD--VEIDVDA 120 (162)
T ss_dssp SSSB-HHHHHHS-TTEEEEESSSST--TSBTHHH
T ss_pred ccccCHHHHHHhcCCeEEeccCcCc--eeEeecc
Confidence 7743 57789999999998888765 3444443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0008 Score=65.52 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=72.0
Q ss_pred cCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--------C------Cc-EEecCCCHHHH
Q 018246 178 YGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--------G------AD-AFLVSSDPAKV 241 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--------g------~~-~v~~~~~~~~~ 241 (359)
....+.|++|||.|+ |.+|..+++.+...|++|++++|+.++.+.+.+.+ | +. ...|..+.+.+
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 334478899999987 99999999999999999999999988876553321 2 11 12355566667
Q ss_pred HHhcCCccEEEECCCChh---------------hHHHHHhcccc--CCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVH---------------SLAPLLGLLKV--NGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~---------------~~~~~~~~l~~--~G~~v~~g~~~ 281 (359)
....+++|+||.++|... ....+++.+.. .++||.++...
T Consensus 154 ~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig 210 (576)
T PLN03209 154 GPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG 210 (576)
T ss_pred HHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence 666779999999987531 11233444433 36899887643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0006 Score=51.97 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=65.0
Q ss_pred CCCEEEEECCchHHHHHHHHHH-HCCCeEEEEeCChhhHHHHHHHc---CC-c--EEecCCCHHHHHHhcCCccEEEECC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGK-AFGLKVTVISTSPKKESEAISKL---GA-D--AFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~-~~g~~V~~v~~~~~~~~~~~~~~---g~-~--~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
|+.+||-+|+|. |..++.+++ ..+++|++++.+++..+.+.+.. +. + .++..+- ........+||+|+...
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 688999999865 777778887 57889999999999888886655 21 1 2222222 12222334799999877
Q ss_pred -CCh---------hhHHHHHhccccCCEEEEe
Q 018246 256 -SAV---------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 256 -g~~---------~~~~~~~~~l~~~G~~v~~ 277 (359)
... ..++.+.+.|+|+|+++.-
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 221 1367899999999998863
|
... |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00072 Score=59.49 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-----E--ecCCCHHHHHHhc-------C
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-----F--LVSSDPAKVKAAM-------G 246 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-----v--~~~~~~~~~~~~~-------~ 246 (359)
..+.++||.|+ +++|...+..+...|.+|+.++|++++++.+.+++.-.+ + +|..+.+.+.++. .
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~ 83 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG 83 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence 46789999997 999999999999999999999999999988866655221 2 3555554444332 2
Q ss_pred CccEEEECCCCh
Q 018246 247 TMDYIIDTVSAV 258 (359)
Q Consensus 247 ~~d~vid~~g~~ 258 (359)
.+|+.++++|..
T Consensus 84 ~IdvLVNNAG~g 95 (265)
T COG0300 84 PIDVLVNNAGFG 95 (265)
T ss_pred cccEEEECCCcC
Confidence 699999999853
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=60.09 Aligned_cols=96 Identities=22% Similarity=0.218 Sum_probs=63.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc---CCc-EEecCCCHHHHHHhcCCccEEEECCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL---GAD-AFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.++++||-+|+|. |..++.+++ .|+ +|++++.++...+.+.+.. +.. .+..... +......++||+|+....
T Consensus 158 ~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~-~~~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 158 LKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI-YLEQPIEGKADVIVANIL 234 (288)
T ss_pred CCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec-ccccccCCCceEEEEecC
Confidence 5789999999987 777777665 566 9999999998777663322 221 1111111 111112348999997654
Q ss_pred Ch---hhHHHHHhccccCCEEEEecCC
Q 018246 257 AV---HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 257 ~~---~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.. ..+..+.+.|+|+|.++..|..
T Consensus 235 ~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 235 AEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 43 2356778999999999988754
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=57.46 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHHcCCcEE-ecCCCHHHHHHhc---CCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISKLGADAF-LVSSDPAKVKAAM---GTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~---~~~d~vid~~g 256 (359)
.+++|||.|+ |++|..+++.+...|++|+++.+ ++++.+.+.++++...+ .|..+.+.+.+.. +.+|++++++|
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag 84 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAG 84 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCC
Confidence 4679999986 99999999999999999888765 45555555455665433 3555544333332 46899999987
Q ss_pred Chh-------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 257 AVH-------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 257 ~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
... ....+...++..|+++.++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~ 134 (237)
T PRK12742 85 IAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN 134 (237)
T ss_pred CCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 421 0123344566778999887643
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00083 Score=56.11 Aligned_cols=91 Identities=25% Similarity=0.290 Sum_probs=68.3
Q ss_pred EEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCCh----hh
Q 018246 187 LGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAV----HS 260 (359)
Q Consensus 187 VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~----~~ 260 (359)
|+|+|+ |.+|...++.+...|.+|++++|++++.+. ..+.+.+ .|..+.+.+.+...++|.||.+++.. ..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccc
Confidence 688997 999999999999999999999999998765 3344433 34566677777778999999999842 22
Q ss_pred HHHHHhccccCC--EEEEecCC
Q 018246 261 LAPLLGLLKVNG--KLVTVGLP 280 (359)
Q Consensus 261 ~~~~~~~l~~~G--~~v~~g~~ 280 (359)
....++.++..| +++.++..
T Consensus 78 ~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 78 AKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp HHHHHHHHHHTTSSEEEEEEET
T ss_pred cccccccccccccccceeeecc
Confidence 556666665554 77776543
|
... |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00041 Score=57.91 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=79.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh---
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV--- 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~--- 258 (359)
-.|++|.|+|.|.+|...+++++.+|++|++.+++....... ...+... . .+.++....|+|+.+....
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~~~----~---~l~ell~~aDiv~~~~plt~~T 105 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGVEY----V---SLDELLAQADIVSLHLPLTPET 105 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTEEE----S---SHHHHHHH-SEEEE-SSSSTTT
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-cccccee----e---ehhhhcchhhhhhhhhcccccc
Confidence 478999999999999999999999999999999998765533 4444421 1 2334445689999877632
Q ss_pred -h-hHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCccc-EEEEcccc
Q 018246 259 -H-SLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAAD-IELVRMDQ 332 (359)
Q Consensus 259 -~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~-~~~~~l~~ 332 (359)
. .=...+..|+++..+|.++-.. .-+-+.+++.+++|++.-. .+++.-|.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~------------------------~vde~aL~~aL~~g~i~ga~lDV~~~EP 158 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGE------------------------LVDEDALLDALESGKIAGAALDVFEPEP 158 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGG------------------------GB-HHHHHHHHHTTSEEEEEESS-SSSS
T ss_pred ceeeeeeeeeccccceEEEeccchh------------------------hhhhhHHHHHHhhccCceEEEECCCCCC
Confidence 1 2257788999999988875321 1234567777888888633 24554443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00051 Score=57.10 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC--CcEEecCCCHHHHH----Hh---cCCccEEE
Q 018246 183 PGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG--ADAFLVSSDPAKVK----AA---MGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~----~~---~~~~d~vi 252 (359)
-|.+|||.| ++++|+..++-...+|-+|++.+|++++++++..... .+.+.|-.+.+.+. ++ ....++++
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheee
Confidence 478999986 5999999999999999999999999999999955554 35566655543222 22 23789999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|-
T Consensus 84 NNAGI 88 (245)
T COG3967 84 NNAGI 88 (245)
T ss_pred ecccc
Confidence 98873
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0016 Score=56.78 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=68.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcEE--ecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADAF--LVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~v--~~~~~~~~~~~~-------~~~~d 249 (359)
++++|+|.|+ |.+|..+++.+...|++|+++++++++.+.+.++. +..+. .|..+.+.+.++ .+++|
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4689999986 99999999999999999999999988776653332 22122 244444333322 24689
Q ss_pred EEEECCCCh-----------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 250 YIIDTVSAV-----------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 250 ~vid~~g~~-----------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.++.+.+.. ..++....+++++|+++.++...
T Consensus 84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~ 138 (238)
T PRK05786 84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS 138 (238)
T ss_pred EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 999888742 11344556667789999887653
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.002 Score=53.95 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=75.8
Q ss_pred CCCEEEEEC-C-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHhc--------CCccEE
Q 018246 183 PGKHLGVAG-L-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAAM--------GTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G-~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~--------~~~d~v 251 (359)
....|||.| + |++|.+.+.-..+.|++|+++.|.-++...+..++|. ..-+|-.+++.+.... +..|+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 446799987 3 9999999888888999999999999999999668884 3445665554433321 378999
Q ss_pred EECCCChh----------h--------------HHHHH--hccccCCEEEEecCCCCCeeeCHH
Q 018246 252 IDTVSAVH----------S--------------LAPLL--GLLKVNGKLVTVGLPEKPLEVPIF 289 (359)
Q Consensus 252 id~~g~~~----------~--------------~~~~~--~~l~~~G~~v~~g~~~~~~~~~~~ 289 (359)
++.+|.+- . +..++ ...+..|++|.+|....-.+++..
T Consensus 86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~ 149 (289)
T KOG1209|consen 86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFG 149 (289)
T ss_pred EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchh
Confidence 99887541 0 11111 244778999999987655555544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=55.17 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=71.4
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCcEEecCCCHHHHHHhc--CCc
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGADAFLVSSDPAKVKAAM--GTM 248 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~~v~~~~~~~~~~~~~--~~~ 248 (359)
+++... +++|++||=+|+|. |..++-+|+..| +|+.+.+.++=.+.+ .+.+|...|..... |-..... ..|
T Consensus 64 m~~~L~-~~~g~~VLEIGtGs-GY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g-DG~~G~~~~aPy 139 (209)
T COG2518 64 MLQLLE-LKPGDRVLEIGTGS-GYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHG-DGSKGWPEEAPY 139 (209)
T ss_pred HHHHhC-CCCCCeEEEECCCc-hHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC-CcccCCCCCCCc
Confidence 344444 49999999999864 888999999888 999999888743333 36777643322111 1111111 379
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecC
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
|.++-+.+.+..=..++++|++||+++..-.
T Consensus 140 D~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 9999888887745789999999999987643
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00096 Score=60.00 Aligned_cols=77 Identities=23% Similarity=0.183 Sum_probs=56.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
++++++|+|+|+.|.+++..+...|+ +|+++.|+.++.+.+.++++.. .+......+.+......+|+||+|++...
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 57899999999999999999999998 8999999999988887776532 11111111122233357999999987543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=51.57 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=70.5
Q ss_pred hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccE
Q 018246 173 SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~ 250 (359)
.+++..+.-..+.+++|+|+|.+|...++.+...| .+|+++++++++.+.+.++++... .....+ ..+...++|+
T Consensus 8 ~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv 84 (155)
T cd01065 8 RALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLD---LEELLAEADL 84 (155)
T ss_pred HHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecc---hhhccccCCE
Confidence 34444432245788999999999999999998886 589999999988877766766431 011111 2233568999
Q ss_pred EEECCCChhh----HHHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAVHS----LAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~~~----~~~~~~~l~~~G~~v~~g~~~ 281 (359)
|+.|++.... .......++++..+++++...
T Consensus 85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~ 119 (155)
T cd01065 85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNP 119 (155)
T ss_pred EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence 9999886541 111223467777788876543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=53.90 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc-EEecCCCHHHHHHhcCCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD-AFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
++.+++|+|+ |.+|..++..+...|++|++++|+.++.+.+.+.+ +.. ...+..+.+.+.+...+.|+||.+++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence 6789999986 99999988888888999999999998877765544 222 12234444555555678999999887
Q ss_pred ChhhHHHHHh-ccccCCEEEEecCCC
Q 018246 257 AVHSLAPLLG-LLKVNGKLVTVGLPE 281 (359)
Q Consensus 257 ~~~~~~~~~~-~l~~~G~~v~~g~~~ 281 (359)
.......... ..+++-.++++....
T Consensus 107 ~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 107 AGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCceechhhhcccCceeEEEEccCCC
Confidence 6551111122 233333456665443
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0029 Score=52.07 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=70.6
Q ss_pred cccccchhhhhhhHhHhcCCCCCCCEEEEECCch-HHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH
Q 018246 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 161 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~-vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
....|+...++...++....--.|.+|+|+|+|. +|..++..++..|++|+++.++.+++
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l------------------- 81 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNL------------------- 81 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhH-------------------
Confidence 3455666666666666654335889999999986 59999999999999999988764322
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+....+|+||.+++.+..+.. ..++++-.+++++.+.
T Consensus 82 --~~~l~~aDiVIsat~~~~ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 82 --KEHTKQADIVIVAVGKPGLVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred --HHHHhhCCEEEEcCCCCceecH--HHccCCeEEEEccCCC
Confidence 2233468999999998774443 3467777778887764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0036 Score=55.99 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=53.9
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEECC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAA-------MGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid~~ 255 (359)
+++||.|+ |++|...++.+...|++|+++++++++.+.+ ...+...+ .|..+.+.+.++ .+++|+++++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL-AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 46899886 9999999999999999999999998877666 44454433 466655443332 24799999999
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
|.
T Consensus 81 g~ 82 (274)
T PRK05693 81 GY 82 (274)
T ss_pred CC
Confidence 83
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0024 Score=57.12 Aligned_cols=74 Identities=26% Similarity=0.316 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.+++++|.|+ |++|...++.+...|++|+++++++++++.+ ...+... ..|..+.+.+..+ .+++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL-ASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN 80 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3578999986 9999999999989999999999998887666 3444432 3455555444332 247999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
+.|.
T Consensus 81 ~ag~ 84 (273)
T PRK06182 81 NAGY 84 (273)
T ss_pred CCCc
Confidence 9874
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=60.96 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=74.9
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHH
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKV 241 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~ 241 (359)
.+..+..+.+..+.....+++|++||.+|+| .|.++..+++..|++|++++.+++..+.+.+......+ +...+ .
T Consensus 147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D---~ 222 (383)
T PRK11705 147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQD---Y 222 (383)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECc---h
Confidence 4444455555555555556899999999985 56677888888899999999999998888443321111 11111 1
Q ss_pred HHhcCCccEEEEC-----CCC---hhhHHHHHhccccCCEEEEec
Q 018246 242 KAAMGTMDYIIDT-----VSA---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 242 ~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
..+.+.+|.|+.. ++. ...+..+.+.|+|+|.++...
T Consensus 223 ~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 223 RDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 2223579988743 333 234788889999999998753
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.004 Score=55.32 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=55.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.+++++|.|+ |++|..+++.+...|++|+++++++++.+.+.++++.. ...|..+.+.+.++ .+.+|++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l 84 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL 84 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4678999986 99999999999999999999999988777775666532 12355554433332 2478999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.|.
T Consensus 85 v~~ag~ 90 (261)
T PRK08265 85 VNLACT 90 (261)
T ss_pred EECCCC
Confidence 998874
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00058 Score=56.41 Aligned_cols=98 Identities=21% Similarity=0.318 Sum_probs=67.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC------------------CC--HHHHH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS------------------SD--PAKVK 242 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~------------------~~--~~~~~ 242 (359)
+..+|+|+|+|.+|+.|+++++.+|++|++.+..+++.+.. +..+...+... .. ...+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL-ESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH-HHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh-hcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 33689999999999999999999999999999999988877 66665443321 01 12233
Q ss_pred HhcCCccEEEECCC-----Chh-hHHHHHhccccCCEEEEecCCC
Q 018246 243 AAMGTMDYIIDTVS-----AVH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 243 ~~~~~~d~vid~~g-----~~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+....+|+++.+.- .+. ..+..++.|+++..++++....
T Consensus 98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~ 142 (168)
T PF01262_consen 98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ 142 (168)
T ss_dssp HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence 34457899986331 112 2367889999999999996543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0022 Score=56.93 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=72.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH---HHcCCcE-E----ecCCCHHHHHH-------hcC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI---SKLGADA-F----LVSSDPAKVKA-------AMG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~---~~~g~~~-v----~~~~~~~~~~~-------~~~ 246 (359)
.|++|+|.|+ +++|.+.+.-....|++++.+++..+|++... ++.+... + .|-.+.+.+.+ ..+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 5789999997 89999988888889999888888887765552 3444322 2 23444443332 235
Q ss_pred CccEEEECCCCh-------------------------hhHHHHHhccccC--CEEEEecCCCCCeeeCH
Q 018246 247 TMDYIIDTVSAV-------------------------HSLAPLLGLLKVN--GKLVTVGLPEKPLEVPI 288 (359)
Q Consensus 247 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~~--G~~v~~g~~~~~~~~~~ 288 (359)
++|+.++++|-. .....++..|++. |+||.+++..+...++.
T Consensus 91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~ 159 (282)
T KOG1205|consen 91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPF 159 (282)
T ss_pred CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCc
Confidence 899999988843 1234456666554 99999988776555544
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0044 Score=55.55 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=54.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHh-------c-CCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAA-------M-GTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~-~~~d~vi 252 (359)
.+++|||.|+ |++|...++.+...|++|+++++++++.+.+ ...+...+ .|..+.+.+..+ . +.+|+++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li 81 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL-EAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF 81 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence 4578999987 9999999999988999999999999888776 44554433 455555433222 1 3689999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
++.|.
T Consensus 82 ~~Ag~ 86 (277)
T PRK05993 82 NNGAY 86 (277)
T ss_pred ECCCc
Confidence 98863
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0066 Score=56.81 Aligned_cols=95 Identities=26% Similarity=0.388 Sum_probs=71.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
.+.+|||+|+|-+|..++..+...|. +|++..|+.+|...+.+++|+..+- .+.+......+|+||.+++.+.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~----l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVA----LEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeec----HHHHHHhhhhCCEEEEecCCCccc
Confidence 67899999999999999999999997 9999999999999998999954432 2334445568999999998765
Q ss_pred -hHHHHHhccccCC--EEEEecCCC
Q 018246 260 -SLAPLLGLLKVNG--KLVTVGLPE 281 (359)
Q Consensus 260 -~~~~~~~~l~~~G--~~v~~g~~~ 281 (359)
.-....+.+++.- -+++++.+.
T Consensus 253 i~~~~ve~a~~~r~~~livDiavPR 277 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIAVPR 277 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEecCCC
Confidence 1234445554443 356666654
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0034 Score=55.95 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=74.9
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCch-HHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~-vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+..+.+..++...---.|++|+|+|.|. +|.-++.++...|++|++..+... .
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~ 194 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------D 194 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------h
Confidence 356777777777777765435899999999865 999999999999999999876432 1
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+||.++|.+..+.. ..++++..++++|...
T Consensus 195 l~~~~~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 195 MASYLKDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP 233 (286)
T ss_pred HHHHHhhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence 33445578999999999875554 4589999999998764
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=58.87 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=67.1
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC----cEEecCCCHHHHHHhc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA----DAFLVSSDPAKVKAAM 245 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~ 245 (359)
...+++....-..+++|+|+|+|++|.+++..+...|+ +|++++|+.++.+.+.++++. ..+.... .+.+..
T Consensus 114 ~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~---~~~~~~ 190 (284)
T PRK12549 114 FAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGS---DLAAAL 190 (284)
T ss_pred HHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc---chHhhh
Confidence 34445432211356889999999999999999999998 899999999998877666531 2222222 122233
Q ss_pred CCccEEEECCCChh----hHHHHHhccccCCEEEEecC
Q 018246 246 GTMDYIIDTVSAVH----SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 246 ~~~d~vid~~g~~~----~~~~~~~~l~~~G~~v~~g~ 279 (359)
..+|+|++|+.... ...-....+++...++++-.
T Consensus 191 ~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY 228 (284)
T PRK12549 191 AAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVY 228 (284)
T ss_pred CCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeee
Confidence 57999999964321 00011234666666666544
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.003 Score=57.08 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh---hhHHHHHHHcCC---c---EEecCCCHHHHHHhcCCccEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP---KKESEAISKLGA---D---AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~---~~~~~~~~~~g~---~---~v~~~~~~~~~~~~~~~~d~v 251 (359)
-.+++++|+|+|++|++++..+...|+ +|+++.|++ ++.+.+.+++.. . ...+..+.+.+......+|++
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence 357889999999999999998889999 599999986 565555444421 1 123333333444444578999
Q ss_pred EECCCChhh-----HHH-HHhccccCCEEEEecCC
Q 018246 252 IDTVSAVHS-----LAP-LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 252 id~~g~~~~-----~~~-~~~~l~~~G~~v~~g~~ 280 (359)
++|+.-... ... ....+.+...++++-..
T Consensus 204 INaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~ 238 (289)
T PRK12548 204 VNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYN 238 (289)
T ss_pred EEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCC
Confidence 998863220 000 12445666666666443
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=57.78 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=69.4
Q ss_pred hhhHhHhcC--CCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcC
Q 018246 171 VYSPMKYYG--MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMG 246 (359)
Q Consensus 171 a~~~l~~~~--~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~ 246 (359)
-+.+|.... ...+|++++|+|+|+.+.+++.-++..|+ +++++.|+.+|.+++.+.++.... +.......+....
T Consensus 111 ~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~- 189 (283)
T COG0169 111 FLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLE- 189 (283)
T ss_pred HHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccccc-
Confidence 344555533 33468999999999999999999999997 899999999999888777763221 1111000011111
Q ss_pred CccEEEECCCChhhHHH-----HHhccccCCEEEEecC
Q 018246 247 TMDYIIDTVSAVHSLAP-----LLGLLKVNGKLVTVGL 279 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~-----~~~~l~~~G~~v~~g~ 279 (359)
.+|+++++++....-.. ...++++.-.+.++-.
T Consensus 190 ~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY 227 (283)
T COG0169 190 EADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY 227 (283)
T ss_pred ccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence 58999999875431110 0355666666666644
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.008 Score=46.44 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=65.6
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHH---HHcCCc--EEecCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAI---SKLGAD--AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~---~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+.++++|+-+|+|. |..+..+++..+ .+|+.++.++...+.+. +.++.. .++..+...........+|+|+..
T Consensus 17 ~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 17 LRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 36778899999977 888899998875 59999999988776653 234432 222221111111223479999975
Q ss_pred CCCh---hhHHHHHhccccCCEEEEec
Q 018246 255 VSAV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 255 ~g~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
.... ..++.+.+.|+++|+++...
T Consensus 96 ~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 5332 25788999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0023 Score=60.38 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=67.4
Q ss_pred EEEECCchHHHHHHHHHHHCC-C-eEEEEeCChhhHHHHHHHc-C--C-cEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFG-L-KVTVISTSPKKESEAISKL-G--A-DAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g-~-~V~~v~~~~~~~~~~~~~~-g--~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
|+|+|+|.+|..+++.+...+ . +|++.+++.++.+.+.+++ + . ...+|..+.+.+.++..+.|+|++|+|....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~ 80 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG 80 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh
Confidence 688888999999999988776 4 8999999999988875542 2 2 3456667777788888899999999997654
Q ss_pred HHHHHhccccCCEEEEec
Q 018246 261 LAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g 278 (359)
...+-.|++.+-.+++.+
T Consensus 81 ~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 81 EPVARACIEAGVHYVDTS 98 (386)
T ss_dssp HHHHHHHHHHT-EEEESS
T ss_pred HHHHHHHHHhCCCeeccc
Confidence 566777888888999843
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0035 Score=56.89 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=57.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--cE-E--ecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--DA-F--LVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~~-v--~~~~~~~~~~~~-------~~~~d 249 (359)
.|+++||.|+ |++|+.+++.+...|++|+++++++++.+.+.++++. +. . .|..+.+.+.++ .+.+|
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 87 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID 87 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5789999986 9999999999999999999999999888777666652 21 1 455555433332 24799
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 88 ~vI~nAG~ 95 (296)
T PRK05872 88 VVVANAGI 95 (296)
T ss_pred EEEECCCc
Confidence 99999985
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0074 Score=55.78 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=54.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.+++++|.|+ |++|+.+++.+...|++|+++++++++.+.+.+ ..|.+. ..|..+.+.+.++ .+++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i 86 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI 86 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence 4678999986 999999999999999999999999887665533 334332 2355555444333 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 87 D~lInnAg~ 95 (334)
T PRK07109 87 DTWVNNAMV 95 (334)
T ss_pred CEEEECCCc
Confidence 999999884
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0038 Score=59.13 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
-.+.+|||+|+|.+|.+++..+...|+ +++++.|+.++.+.+.++++...++.. +.+......+|+||.|++.+.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~---~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL---SELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH---HHHHHHhccCCEEEECcCCCC
Confidence 367899999999999999999999997 899999999998888777763223322 333455568999999999876
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=57.38 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=71.4
Q ss_pred hhhhhhHhHh-cCCCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc
Q 018246 168 GITVYSPMKY-YGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM 245 (359)
Q Consensus 168 ~~ta~~~l~~-~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 245 (359)
+.....++.. .+.-..+.+++|+|+|++|.+++..+...| .+|+++.|+.++.+.+.++++....+... . ......
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~-~-~~~~~~ 183 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELD-L-ELQEEL 183 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeec-c-cchhcc
Confidence 3334445543 232246788999999999999999999999 49999999999888776666532101110 0 112233
Q ss_pred CCccEEEECCCChhh-----HHHHHhccccCCEEEEecCC
Q 018246 246 GTMDYIIDTVSAVHS-----LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 246 ~~~d~vid~~g~~~~-----~~~~~~~l~~~G~~v~~g~~ 280 (359)
..+|+|++|++.... .......+.+...++++-..
T Consensus 184 ~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~ 223 (278)
T PRK00258 184 ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYG 223 (278)
T ss_pred ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecC
Confidence 579999999875431 01123566777777777543
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00073 Score=65.38 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=56.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh---------------------hhHHHHHHHcCCcEEecCCCH-H
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP---------------------KKESEAISKLGADAFLVSSDP-A 239 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~---------------------~~~~~~~~~~g~~~v~~~~~~-~ 239 (359)
..+++|+|+|+|+.|+.++..++..|.+|+++++.+ .+.+.+ +++|++..++..-. +
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~-~~~Gv~~~~~~~v~~~ 217 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIF-TAMGIEFHLNCEVGRD 217 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHH-HHCCCEEECCCEeCCc
Confidence 367899999999999999999999999999998664 133444 78887765554211 1
Q ss_pred -HHHHhcCCccEEEECCCChh
Q 018246 240 -KVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 240 -~~~~~~~~~d~vid~~g~~~ 259 (359)
.+..+..++|.||.++|...
T Consensus 218 ~~~~~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 218 ISLDDLLEDYDAVFLGVGTYR 238 (467)
T ss_pred cCHHHHHhcCCEEEEEeCCCC
Confidence 22233347999999999754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0058 Score=55.82 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHH---HHcCCcEEecCCCHHHHHHh--cCCccEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAI---SKLGADAFLVSSDPAKVKAA--MGTMDYII 252 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~---~~~g~~~v~~~~~~~~~~~~--~~~~d~vi 252 (359)
.++++++||.+|+| .|..++.+++..+. +|++++.+++..+.+. ++.|.+.+..... +..... ...+|+|+
T Consensus 77 ~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g-D~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 77 GLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG-DGYYGVPEFAPYDVIF 154 (322)
T ss_pred CCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC-ChhhcccccCCccEEE
Confidence 34789999999997 59999999998864 7999999998765553 3456543322211 111111 13699999
Q ss_pred ECCCChhhHHHHHhccccCCEEEEe
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
.+.+........++.|+++|+++..
T Consensus 155 ~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 155 VTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ECCchHHhHHHHHHhcCCCCEEEEE
Confidence 9888766456788999999998763
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0042 Score=54.35 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=57.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhc---CCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAM---GTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~---~~~d~vid~~g~ 257 (359)
.+.+++|.|+ |.+|...++.+...|++|+++++++++.+.+.+..+... ..|..+.+.+.++. +++|++|++.|.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag~ 87 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAGI 87 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence 5678999987 999999999999999999999999888777655556543 34555555444433 368999999874
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=62.08 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
.+|++|+|+|.|..|++++++++..|++|++.+..+++.+.+ +++|+..+...+..+. ...+|+|+.+.|-+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~~----l~~~D~VV~SpGi~ 81 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQQ----IADYALVVTSPGFR 81 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHhH----hhcCCEEEECCCCC
Confidence 578899999999999999999999999999999887776665 6778754322222222 23679999998865
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0043 Score=57.23 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=56.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~-------~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++++.+.+ +.|.+. ..|..+.+.+.++. +++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 5689999987 999999999999999999999999988765533 345432 23555554444332 579
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|+++|.
T Consensus 86 D~lVnnAG~ 94 (330)
T PRK06139 86 DVWVNNVGV 94 (330)
T ss_pred CEEEECCCc
Confidence 999999984
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0086 Score=53.56 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCceEECCCCCCccccccccchhhhhh--hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHH
Q 018246 146 QHYVLRFPDNMPLDAGAPLLCAGITVY--SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESE 222 (359)
Q Consensus 146 ~~~~~~lp~~l~~~~aa~l~~~~~ta~--~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~ 222 (359)
...+++|.+++.+-. .....|++ .++... +++|.+||-+|+|. |.+++..+ .+|+ +|++++-.+...+.
T Consensus 129 ~~~~i~lDPGlAFGT----G~HpTT~lcL~~Le~~--~~~g~~vlDvGcGS-GILaIAa~-kLGA~~v~g~DiDp~AV~a 200 (300)
T COG2264 129 DELNIELDPGLAFGT----GTHPTTSLCLEALEKL--LKKGKTVLDVGCGS-GILAIAAA-KLGAKKVVGVDIDPQAVEA 200 (300)
T ss_pred CceEEEEccccccCC----CCChhHHHHHHHHHHh--hcCCCEEEEecCCh-hHHHHHHH-HcCCceEEEecCCHHHHHH
Confidence 355777777775543 22333322 223333 35999999998753 55555544 4687 89999988876655
Q ss_pred HHH---HcCCcEEecCCCHHHHHHhc-CCccEEEECCCChh---hHHHHHhccccCCEEEEecCCCC
Q 018246 223 AIS---KLGADAFLVSSDPAKVKAAM-GTMDYIIDTVSAVH---SLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 223 ~~~---~~g~~~v~~~~~~~~~~~~~-~~~d~vid~~g~~~---~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
+.+ .-+................. +.+|+|+.+.=... ......+.++|+|++++.|....
T Consensus 201 a~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~ 267 (300)
T COG2264 201 ARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILED 267 (300)
T ss_pred HHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHh
Confidence 522 22222211111111122222 48999998764332 34678889999999999997654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0073 Score=52.95 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
++.+++|.|+ |++|...+..+...|++|+++++++++.+...++ .+.. ...|..+.+.+..+. +++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4688999986 9999999999999999999999988766554333 2322 223555554433322 479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.++|.
T Consensus 86 d~vi~~ag~ 94 (250)
T PRK12939 86 DGLVNNAGI 94 (250)
T ss_pred CEEEECCCC
Confidence 999999885
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0088 Score=57.69 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=53.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh--hhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP--KKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~--~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
+++++||.|+ |++|...++.+...|++|+++++.. ++.+.+.++++.. ..+|..+.+.+..+ .+++|++
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v 288 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV 288 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 5789999986 9999999999999999999998743 3444444556643 23465555443332 2368999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
|++.|.
T Consensus 289 i~~AG~ 294 (450)
T PRK08261 289 VHNAGI 294 (450)
T ss_pred EECCCc
Confidence 999883
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0095 Score=50.65 Aligned_cols=89 Identities=19% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|.+|+|.|.|.+|..+++.+...|++|+++++++++.+.+.+.+|+..+ +..+ -.....|+++-|......-
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~-----l~~~~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEE-----IYSVDADVFAPCALGGVIN 99 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchh-----hccccCCEEEecccccccC
Confidence 367899999999999999999999999999999999888877566675433 2211 1112688998666544423
Q ss_pred HHHHhccccCCEEEEec
Q 018246 262 APLLGLLKVNGKLVTVG 278 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g 278 (359)
...++.|+ .++|.-+
T Consensus 100 ~~~~~~l~--~~~v~~~ 114 (200)
T cd01075 100 DDTIPQLK--AKAIAGA 114 (200)
T ss_pred HHHHHHcC--CCEEEEC
Confidence 45555664 3444433
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0054 Score=55.07 Aligned_cols=75 Identities=13% Similarity=0.254 Sum_probs=53.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcC----CcEEecCCCHHHHHHhcCCccEEEECCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLG----ADAFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
..+++++|+|+|+.+++++..+...|+ +++++.|+.+|.+.+.+++. ...+. ..+..........+|+|++++.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhcCEEEEcCC
Confidence 357899999999999999998888998 89999999999888766553 11121 1111111222346899999886
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
-
T Consensus 204 ~ 204 (283)
T PRK14027 204 M 204 (283)
T ss_pred C
Confidence 3
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.008 Score=52.31 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----cE-EecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----DA-FLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~~-v~~~~~~~~~~~~-------~~~~d 249 (359)
.+.+++|+|+ |.+|..+++.+...|++|+++++++++.+.+.+++.. .. ..|..+.+.+... .+++|
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 84 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD 84 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678999986 9999999998888899999999998877666555431 11 1244444332222 24799
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|++.|.
T Consensus 85 ~vi~~ag~ 92 (237)
T PRK07326 85 VLIANAGV 92 (237)
T ss_pred EEEECCCC
Confidence 99998764
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0049 Score=55.11 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=70.0
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---cEEecCCCHHHHHHhc
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---DAFLVSSDPAKVKAAM 245 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~ 245 (359)
.....++........+++++|+|+|++|.+++..+...|++|++++|++++.+.+.+++.. ....... . ...
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~---~--~~~ 176 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMD---E--LPL 176 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechh---h--hcc
Confidence 3334445443333557899999999999999988888899999999998887776555532 1222111 1 112
Q ss_pred CCccEEEECCCChh--hH---HHHHhccccCCEEEEecCCC
Q 018246 246 GTMDYIIDTVSAVH--SL---APLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 246 ~~~d~vid~~g~~~--~~---~~~~~~l~~~G~~v~~g~~~ 281 (359)
..+|++++|++... .. ......++++..++++...+
T Consensus 177 ~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 177 HRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP 217 (270)
T ss_pred cCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC
Confidence 46899999998642 01 01134567777888875543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0058 Score=56.17 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=73.2
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHH-HHCCC-eEEEEeCChhhHHHHHHHc----CCcEEecCCCHHHHHHhcCCcc
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIG-KAFGL-KVTVISTSPKKESEAISKL----GADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la-~~~g~-~V~~v~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d 249 (359)
+...+ ...++++|+|+|..|.+.+..+ ...+. +|.+.++++++.+.+.+++ +... ....+ ..+.....|
T Consensus 120 ~~la~-~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~-~~~~~---~~~~~~~aD 194 (325)
T PRK08618 120 KYLAR-EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEI-YVVNS---ADEAIEEAD 194 (325)
T ss_pred HHhcC-CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcE-EEeCC---HHHHHhcCC
Confidence 44444 4567899999999998877554 45677 8999999999887775544 4332 22222 233446799
Q ss_pred EEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCH
Q 018246 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPI 288 (359)
Q Consensus 250 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~ 288 (359)
+|+.|+++.+.+ -. ..+++|-.+..+|.... ...++.
T Consensus 195 iVi~aT~s~~p~-i~-~~l~~G~hV~~iGs~~p~~~E~~~ 232 (325)
T PRK08618 195 IIVTVTNAKTPV-FS-EKLKKGVHINAVGSFMPDMQELPS 232 (325)
T ss_pred EEEEccCCCCcc-hH-HhcCCCcEEEecCCCCcccccCCH
Confidence 999999876622 23 88899999999987653 334454
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.016 Score=49.39 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=71.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcC-CcEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLG-ADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
.|.+|||+|+|.+|..-++.+...|++|++++.... ....+ .+.| ...+-..-.. ....++++||-+++....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l-~~~~~i~~~~~~~~~----~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLL-AEQGGITWLARCFDA----DILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHH-HHcCCEEEEeCCCCH----HHhCCcEEEEECCCCHHH
Confidence 467999999999999999999999999999987654 33344 2333 2222111111 123589999999999863
Q ss_pred HHHHHhccccCCEEEEecCCCCCeeeCHHHHHh-cCcEEEEe
Q 018246 261 LAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVG-ARRLVGGS 301 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-k~~~i~g~ 301 (359)
-.......+..|.++.+........|.+...+. ..+++.-+
T Consensus 83 n~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais 124 (205)
T TIGR01470 83 NRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS 124 (205)
T ss_pred HHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence 345555566778888765544333332222232 33555433
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0097 Score=58.51 Aligned_cols=100 Identities=19% Similarity=0.299 Sum_probs=71.2
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
..|+++||.|+ +++|+..++.+...|++|+++++++++.+.+.++++.. ...|..+.+.+.++ .+.+|+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 346 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV 346 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46788999986 99999999999999999999999998888776666643 22355554433332 247999
Q ss_pred EEECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++.++|.. ...+.++..|+.+|+++.++...
T Consensus 347 li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~ 403 (520)
T PRK06484 347 LVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA 403 (520)
T ss_pred EEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence 99988742 01233445566679999987644
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0026 Score=54.12 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=61.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
.|.+|||+|+|.+|...+..+...|++|+++++... ++..+........ .... .......++|+||-+++.+. +
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~--~~~~--~~~~~l~~adlViaaT~d~e-l 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRW--KQKE--FEPSDIVDAFLVIAATNDPR-V 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEE--EecC--CChhhcCCceEEEEcCCCHH-H
Confidence 578999999999999999988889999999976532 2233312211111 1111 11112347999999999988 7
Q ss_pred HHHHhccccCCEEEEecCCCC
Q 018246 262 APLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~ 282 (359)
+..+...+..+.++.+.....
T Consensus 84 N~~i~~~a~~~~lvn~~d~~~ 104 (202)
T PRK06718 84 NEQVKEDLPENALFNVITDAE 104 (202)
T ss_pred HHHHHHHHHhCCcEEECCCCc
Confidence 666665555567777755443
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0081 Score=54.12 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=55.0
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh---hhHHHHHHHcCCc-----EEecCCCHHHHH
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP---KKESEAISKLGAD-----AFLVSSDPAKVK 242 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~---~~~~~~~~~~g~~-----~v~~~~~~~~~~ 242 (359)
..+++..+.--.++++||+|+|+.+++++..+...|+ +|+++.|++ ++.+.+.++++.. .+....+.+.+.
T Consensus 112 ~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~ 191 (288)
T PRK12749 112 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA 191 (288)
T ss_pred HHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhh
Confidence 3445443322367799999999999988887778898 999999985 4666665666421 122211111122
Q ss_pred HhcCCccEEEECCCC
Q 018246 243 AAMGTMDYIIDTVSA 257 (359)
Q Consensus 243 ~~~~~~d~vid~~g~ 257 (359)
.....+|+|++|+.-
T Consensus 192 ~~~~~aDivINaTp~ 206 (288)
T PRK12749 192 EALASADILTNGTKV 206 (288)
T ss_pred hhcccCCEEEECCCC
Confidence 333579999998864
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0068 Score=55.32 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=64.4
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.+|.|+|.|.+|.+.+..++..|. +|+++++++++.+.+ ++.|.......+ ..+.....|+|+.|+....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-~~~g~~~~~~~~----~~~~~~~aDvViiavp~~~~~~ 81 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-RELGLGDRVTTS----AAEAVKGADLVILCVPVGASGA 81 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-HhCCCCceecCC----HHHHhcCCCEEEECCCHHHHHH
Confidence 579999999999999999888885 899999999888777 667743211111 1223357899999998754
Q ss_pred hHHHHHhccccCCEEEEecCC
Q 018246 260 SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.+......++++..++++|..
T Consensus 82 v~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 82 VAAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHHHhhCCCCCEEEeCccc
Confidence 233344456777777777653
|
|
| >PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.03 Score=50.48 Aligned_cols=157 Identities=17% Similarity=0.066 Sum_probs=90.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHH-HCCC-eEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHhc-CCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGK-AFGL-KVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAAM-GTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~-~~g~-~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~-~~~d~vid~~g~ 257 (359)
..+.|+|.++ +-.++..+.+++ ..+. +++.+.+...+. ..+.+|. +.++.|++ +.++. ...-+++|..|+
T Consensus 135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~~--Fve~lg~Yd~V~~Yd~---i~~l~~~~~~v~VDfaG~ 209 (314)
T PF11017_consen 135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNVA--FVESLGCYDEVLTYDD---IDSLDAPQPVVIVDFAGN 209 (314)
T ss_pred CccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcchh--hhhccCCceEEeehhh---hhhccCCCCEEEEECCCC
Confidence 4456777765 888888888888 4444 888888765553 4488994 78887765 44443 356778899999
Q ss_pred hhhHHHHHhccccCC-EEEEecCCCCC-e------------eeCHHHHHhcCcEEEEeecCCHHHHHHHH-HHHHhCCCc
Q 018246 258 VHSLAPLLGLLKVNG-KLVTVGLPEKP-L------------EVPIFALVGARRLVGGSNVGGMKETQEML-DFCAKHNIA 322 (359)
Q Consensus 258 ~~~~~~~~~~l~~~G-~~v~~g~~~~~-~------------~~~~~~~~~k~~~i~g~~~~~~~~~~~~~-~~l~~g~i~ 322 (359)
..+...+-..++..= ..+.+|..+.. . .|.....+.|.+.-.|..... +.+.+.. ++++...=-
T Consensus 210 ~~~~~~Lh~~l~d~l~~~~~VG~th~~~~~~~~~l~g~~~~~FFAp~~~~kr~~~~G~~~~~-~r~~~aw~~f~~~~~~w 288 (314)
T PF11017_consen 210 GEVLAALHEHLGDNLVYSCLVGATHWDKVEAPADLPGPRPEFFFAPDQIDKRIKEWGAAEFF-QRMAAAWKRFAADAQPW 288 (314)
T ss_pred HHHHHHHHHHHhhhhhEEEEEEccCccccCccccCCCCCcEEEeChHHHHHHHHHhCHHHHH-HHHHHHHHHHHHhhcCc
Confidence 886777777776653 45666654421 1 111111122222212211111 1112222 222222111
Q ss_pred ccE-EEEccccHHHHHHHHHcCCc
Q 018246 323 ADI-ELVRMDQINTAMERLAKSDV 345 (359)
Q Consensus 323 ~~~-~~~~l~~~~~a~~~~~~~~~ 345 (359)
..+ +.-+.+.+.++++.+.+++.
T Consensus 289 l~~~~~~G~ea~~~~y~~l~~G~v 312 (314)
T PF11017_consen 289 LKVEEVAGPEAVEAAYQDLLAGKV 312 (314)
T ss_pred EEEEEecCHHHHHHHHHHHhcCCC
Confidence 222 56789999999999988763
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0026 Score=54.38 Aligned_cols=100 Identities=26% Similarity=0.324 Sum_probs=62.5
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHH---HHHcCCcEE-ecCCCHHHHHHhcCCccE
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEA---ISKLGADAF-LVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~---~~~~g~~~v-~~~~~~~~~~~~~~~~d~ 250 (359)
....+++|++||-+|+|. |..++-+++..|. +|+.+++.++-.+.+ ++.++.+.+ +...+...-......||.
T Consensus 66 ~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~ 144 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDR 144 (209)
T ss_dssp HHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEE
T ss_pred HHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCE
Confidence 333369999999998753 6777777777665 799999888755444 234554322 111221110111237999
Q ss_pred EEECCCChhhHHHHHhccccCCEEEEe
Q 018246 251 IIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 251 vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
++-+.+....-...+++|++||++|..
T Consensus 145 I~v~~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 145 IIVTAAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp EEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred EEEeeccchHHHHHHHhcCCCcEEEEE
Confidence 999888777457899999999999974
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.017 Score=51.80 Aligned_cols=99 Identities=22% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHHcCCcE--EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSP---KKESEAISKLGADA--FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ +++|+++++.+...|++|+++++++ ++.+.+.++++... ..|-.+.+.+.++ .+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~ 83 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK 83 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4688999986 5899999999989999999999875 34444434555332 2455554433322 247
Q ss_pred ccEEEECCCCh-----------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV-----------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|++++++|.. ...+.++..|..+|+++.++...
T Consensus 84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~ 146 (274)
T PRK08415 84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG 146 (274)
T ss_pred CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence 99999998831 01234555677789999886543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.01 Score=52.05 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHH---HHcCCc---EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAI---SKLGAD---AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~---~~~g~~---~v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |.+|...+..+...|.+|++++++.+ +.+.+. +..+.. ...|..+.+.+..+. ++
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4678999986 99999999999889999999888653 333332 222322 123555554433221 36
Q ss_pred ccEEEECCCCh-------------------hhHHHHHhccccCCEEEEecC
Q 018246 248 MDYIIDTVSAV-------------------HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 248 ~d~vid~~g~~-------------------~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+|+++.+.+.. ..++.+...+..+|+++.++.
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 89999887642 123455556666789988865
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0067 Score=53.56 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=55.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhc-------CCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAM-------GTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~-------~~~d~vid 253 (359)
.|++|+|.|+ |++|..+++.+...|++|+++++++.+.+...++++.. ...|..+.+.+.++. +++|+++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 85 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN 85 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4789999987 99999999999999999999999988776664555543 234555554433322 47899999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
+.|.
T Consensus 86 ~ag~ 89 (255)
T PRK06057 86 NAGI 89 (255)
T ss_pred CCCc
Confidence 8874
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.015 Score=57.11 Aligned_cols=76 Identities=24% Similarity=0.400 Sum_probs=57.9
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.+++++||.|+ +++|.+.++.+...|++|++++++.++.+.+.++++.. ...|..+.+.+.++ .+++|+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~ 82 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV 82 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence 36789999986 99999999999999999999999999888776777643 23455555433332 247999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++++.|.
T Consensus 83 li~nag~ 89 (520)
T PRK06484 83 LVNNAGV 89 (520)
T ss_pred EEECCCc
Confidence 9999874
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.006 Score=54.06 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=75.2
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKV 241 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~ 241 (359)
-..++..+.....++||++||-+|+|- |.+++.+|+..|++|+.+.-+++..+.+.+ +.|.. .+. . ...
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~-l---~d~ 131 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR-L---QDY 131 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE-e---ccc
Confidence 445566666666679999999999875 667888999999999999999998777633 34532 111 0 111
Q ss_pred HHhcCCccEEEE-----CCCCh---hhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIID-----TVSAV---HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid-----~~g~~---~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
..+.+.||-|+. .+|.. ..+..+-+.|+++|++++-....
T Consensus 132 rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 132 RDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred cccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 223345777754 44542 34678889999999998776544
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0026 Score=64.07 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=56.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh---------------------hHHHHHHHcCCcEEecCCCH--H
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK---------------------KESEAISKLGADAFLVSSDP--A 239 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~---------------------~~~~~~~~~g~~~v~~~~~~--~ 239 (359)
.+++|+|+|+|+.|+.++..++..|.+|+++.+.+. +.+.+ +++|++..++..-. -
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~-~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIF-TAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHH-HHCCeEEEcCCccCCcC
Confidence 489999999999999999999999999999987763 33444 67887766554321 1
Q ss_pred HHHHhcCCccEEEECCCCh
Q 018246 240 KVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~ 258 (359)
.+..+..++|.||.++|..
T Consensus 388 ~~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 388 TFSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred CHHHHHhcCCEEEEeCCCC
Confidence 2334456899999999874
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.016 Score=51.32 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=53.3
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc---EEecCCCHHHHHHh--------cCCccEE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD---AFLVSSDPAKVKAA--------MGTMDYI 251 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~---~v~~~~~~~~~~~~--------~~~~d~v 251 (359)
+++||.|+ |.+|...++.+...|++|++++++++..+.+.+..+ .. ...|..+.+.+.++ .+.+|++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v 81 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL 81 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence 46899986 999999999888899999999999988777745443 11 23455554433322 3478999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.++|.
T Consensus 82 i~~ag~ 87 (260)
T PRK08267 82 FNNAGI 87 (260)
T ss_pred EECCCC
Confidence 999885
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0061 Score=53.65 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=52.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGA-DAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+++++|.|+ |++|..+++.+...|++|+++++++. +.+.. ..... ....|-.+.+.+.+..+.+|++++++|.
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~ 89 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESN-DESPNEWIKWECGKEESLDKQLASLDVLILNHGI 89 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhh-ccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence 4678999986 99999999999999999999998762 22222 11111 1234555556666666789999999975
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0097 Score=53.32 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=66.5
Q ss_pred cchhhhhhhHhHhcCCCCCCCEEEEECCch-HHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHH
Q 018246 165 LCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKA 243 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~-vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 243 (359)
+++.......++..+.--.|++|+|+|.|. +|...+.++...|++|++..+....+ .+
T Consensus 140 p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L---------------------~~ 198 (283)
T PRK14192 140 SATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNL---------------------PE 198 (283)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhH---------------------HH
Confidence 444433344454554446889999999976 99999999999999888887632221 22
Q ss_pred hcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 244 AMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 244 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
....+|+++.++|.+..+. ...++++..++++|...
T Consensus 199 ~~~~aDIvI~AtG~~~~v~--~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 199 LVKQADIIVGAVGKPELIK--KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred HhccCCEEEEccCCCCcCC--HHHcCCCCEEEEEEEee
Confidence 2357899999998766333 35689999999998654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0088 Score=51.34 Aligned_cols=92 Identities=25% Similarity=0.290 Sum_probs=63.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcEEecCCCH--HHHHHhcCCccEEEE---
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADAFLVSSDP--AKVKAAMGTMDYIID--- 253 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~v~~~~~~--~~~~~~~~~~d~vid--- 253 (359)
-+|.+||-+|+|+ |+++.-+|+ .|++|+++|.+++-.+.+.. +-|.. +++... +.+.+..+.||+|+.
T Consensus 58 l~g~~vLDvGCGg-G~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGG-GILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCc-cHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhH
Confidence 3788999999854 566666665 58999999999998888721 22222 445443 233333358999986
Q ss_pred --CCCChh-hHHHHHhccccCCEEEEe
Q 018246 254 --TVSAVH-SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 --~~g~~~-~~~~~~~~l~~~G~~v~~ 277 (359)
.+..+. .+..+.++++|+|.++..
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred HHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 445444 568899999999998765
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.002 Score=48.51 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=61.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
.|.+|||+|+|.+|..-++.+...|++|++++... +.. + --.+. . .+. ......++++|+.+.+.+..-+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~-~-~~i~~-~-~~~---~~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFS-E-GLIQL-I-RRE---FEEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHH-H-TSCEE-E-ESS----GGGCTTESEEEE-SS-HHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhh-h-hHHHH-H-hhh---HHHHHhhheEEEecCCCHHHHH
Confidence 57899999999999999999999999999999886 122 2 11221 1 111 1223458999999999888444
Q ss_pred HHHhccccCCEEEEecCCCC
Q 018246 263 PLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~~~~ 282 (359)
...+..+..|.++.+.....
T Consensus 76 ~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 76 AIYADARARGILVNVVDDPE 95 (103)
T ss_dssp HHHHHHHHTTSEEEETT-CC
T ss_pred HHHHHHhhCCEEEEECCCcC
Confidence 55566666899998876554
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=51.85 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc---E-EecCCCHHHHHHhc-------C
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD---A-FLVSSDPAKVKAAM-------G 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~---~-v~~~~~~~~~~~~~-------~ 246 (359)
.++++||.|+ |.+|...+..+...|++|+++++++++.+.+.+++ +.. . ..|-.+.+.+..+. +
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4688999986 99999999999999999999999988776554443 211 1 23555554443332 3
Q ss_pred CccEEEECCC
Q 018246 247 TMDYIIDTVS 256 (359)
Q Consensus 247 ~~d~vid~~g 256 (359)
++|+++.+.+
T Consensus 83 ~id~vi~~A~ 92 (256)
T PRK09186 83 KIDGAVNCAY 92 (256)
T ss_pred CccEEEECCc
Confidence 6899999885
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0085 Score=53.17 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=55.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
+++++||.|+ |++|..+++.+...|++|+++++++++.+.+.++++.. ...|..+.+.+..+ .+.+|++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 84 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF 84 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 4678999986 99999999999999999999999988887775555532 22344444333222 2478999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 85 i~~ag~ 90 (263)
T PRK06200 85 VGNAGI 90 (263)
T ss_pred EECCCC
Confidence 999873
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=51.12 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=51.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE-EecCCCHHHHHHh-------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA-FLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~-v~~~~~~~~~~~~-------~~~~d~ 250 (359)
+++++||+|+ |.+|..+++.+.+.|++|+++++++++.....+++ +... ..|..+.+.+..+ .+++|+
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 85 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA 85 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence 4789999986 99999999998888999999999876644432322 2222 2344444333222 247999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.+.+.
T Consensus 86 vi~~ag~ 92 (239)
T PRK12828 86 LVNIAGA 92 (239)
T ss_pred EEECCcc
Confidence 9998874
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0072 Score=53.91 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=57.6
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCC
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~ 247 (359)
...+.+++..+. ..+++++|+|+|+.+++++..++..|+ +|+++.|++++.+.+.+.++... . +.. ....
T Consensus 108 ~Gf~~~L~~~~~-~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~----~--~~~--~~~~ 178 (272)
T PRK12550 108 IAIAKLLASYQV-PPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW----R--PDL--GGIE 178 (272)
T ss_pred HHHHHHHHhcCC-CCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc----h--hhc--cccc
Confidence 334455554443 456789999999999999999999998 79999999999888866665221 1 011 1135
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++|+..
T Consensus 179 ~dlvINaTp~ 188 (272)
T PRK12550 179 ADILVNVTPI 188 (272)
T ss_pred CCEEEECCcc
Confidence 8999999863
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0068 Score=53.69 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=55.8
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc----EEecCCCHHHHHHh-------cCCcc
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD----AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~-------~~~~d 249 (359)
-++.++||.|+ |.+|..++..+...|++|+++++++++.+.+.+..... ...|..+.+.+..+ .+++|
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 88 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD 88 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 46789999986 99999999999999999999999887776664443322 23355554433322 24799
Q ss_pred EEEECCCCh
Q 018246 250 YIIDTVSAV 258 (359)
Q Consensus 250 ~vid~~g~~ 258 (359)
+|+.+.|..
T Consensus 89 ~vi~~ag~~ 97 (264)
T PRK12829 89 VLVNNAGIA 97 (264)
T ss_pred EEEECCCCC
Confidence 999988753
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=59.12 Aligned_cols=134 Identities=25% Similarity=0.352 Sum_probs=72.4
Q ss_pred cceEEEeeCCceEECCCCCCccccccccchhhh--hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEe
Q 018246 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT--VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVIS 214 (359)
Q Consensus 138 ~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t--a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~ 214 (359)
|.+|-.-+.+.++.|.+++.+-..- ...| .+.++.+. ..+|++||-+|+|. |.+++..++ +|+ +|++++
T Consensus 120 w~~~~~~~~~~~I~idPg~AFGTG~----H~TT~lcl~~l~~~--~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~D 191 (295)
T PF06325_consen 120 WEEYPEPPDEIVIEIDPGMAFGTGH----HPTTRLCLELLEKY--VKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAID 191 (295)
T ss_dssp T----SSTTSEEEEESTTSSS-SSH----CHHHHHHHHHHHHH--SSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEE
T ss_pred CcccCCCCCcEEEEECCCCcccCCC----CHHHHHHHHHHHHh--ccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEec
Confidence 4555222445677777776655542 1111 12334444 36889999988642 334443333 588 899999
Q ss_pred CChhhHHHHHH---HcCC-cEEecCCCHHHHHHhcCCccEEEECCCChhh---HHHHHhccccCCEEEEecCCCC
Q 018246 215 TSPKKESEAIS---KLGA-DAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS---LAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 215 ~~~~~~~~~~~---~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~---~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
-++...+.+.+ .-|. ..+.-....+ ...+.||+|+-+.-.... +....+.|+++|.+++.|....
T Consensus 192 iDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 192 IDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEE 263 (295)
T ss_dssp SSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGG
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHH
Confidence 98876555522 2222 2221111111 112589999987776542 3456678999999999987653
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0096 Score=54.76 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=66.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHH-HCCC-eEEEEeCChhhHHHHHHHc----CCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGK-AFGL-KVTVISTSPKKESEAISKL----GADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~-~~g~-~V~~v~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+...+++|+|+|..|.+.+..+. ..+. +|.+..|++++.+.+.+++ |.. +....+ +.+.....|+|+.|+
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~~~---~~~av~~aDiVvtaT 202 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAATD---PRAAMSGADIIVTTT 202 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEeCC---HHHHhccCCEEEEec
Confidence 45678999999999988887776 4676 8999999999987776655 432 222222 334446899999998
Q ss_pred CChh-hHHHHHhccccCCEEEEecCCC
Q 018246 256 SAVH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 256 g~~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+... .+.. ..++++-.+..+|...
T Consensus 203 ~s~~p~i~~--~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 203 PSETPILHA--EWLEPGQHVTAMGSDA 227 (326)
T ss_pred CCCCcEecH--HHcCCCcEEEeeCCCC
Confidence 7654 2322 3578888888888654
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0084 Score=48.82 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=59.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
.|.+|+|+|+|.+|..-++.+...|++|++++ ++..+.+ ++++.-... .+. ....-..++|+|+-+++... .+
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l-~~l~~i~~~-~~~--~~~~dl~~a~lViaaT~d~e-~N 84 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEM-KELPYITWK-QKT--FSNDDIKDAHLIYAATNQHA-VN 84 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHH-HhccCcEEE-ecc--cChhcCCCceEEEECCCCHH-HH
Confidence 67899999999999999999888999999885 3343444 344421111 111 11111247999999999888 76
Q ss_pred HHHhccccCCEEEEecCC
Q 018246 263 PLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~~ 280 (359)
..+...+..+.++.....
T Consensus 85 ~~i~~~a~~~~~vn~~d~ 102 (157)
T PRK06719 85 MMVKQAAHDFQWVNVVSD 102 (157)
T ss_pred HHHHHHHHHCCcEEECCC
Confidence 666656554445555443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0067 Score=54.95 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=53.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+++|.|+ |++|...++.+...|++|+++++++++.+.+.+++ +.+ ...|-.+.+.+.++ .+.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV 118 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999986 99999999999889999999999988776653332 322 12344444333332 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 119 d~li~~AG~ 127 (293)
T PRK05866 119 DILINNAGR 127 (293)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0063 Score=54.34 Aligned_cols=102 Identities=24% Similarity=0.260 Sum_probs=60.4
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc--EEecCCCHHHHHHhcC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD--AFLVSSDPAKVKAAMG 246 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~ 246 (359)
+..+.....+++|++||-+|+| -|-++..+|+..|++|+++..+++..+++.+ +.|.. ..+...+. ..+..
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~---~~~~~ 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY---RDLPG 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G---GG---
T ss_pred HHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec---cccCC
Confidence 3334445556999999999987 4667778888889999999999998877733 34421 11111111 12334
Q ss_pred CccEEEE-----CCCCh---hhHHHHHhccccCCEEEEe
Q 018246 247 TMDYIID-----TVSAV---HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 247 ~~d~vid-----~~g~~---~~~~~~~~~l~~~G~~v~~ 277 (359)
.||.|+. .+|.. ..+..+-+.|+|+|+++.-
T Consensus 127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 8898865 34432 2467888999999998754
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=57.48 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=66.6
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--h
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--S 260 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--~ 260 (359)
+.+|+|+|+|.+|.+++..+...|+ +|+++.++.++.+.+.++++...+ .....+.......+.|+||.|++... .
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~~~~dl~~al~~aDVVIsAT~s~~pvI 344 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYKPLDEMLACAAEADVVFTSTSSETPLF 344 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-EeecHhhHHHHHhcCCEEEEccCCCCCee
Confidence 6889999999999999999999998 899999999998888666742111 11122233444568999999987654 1
Q ss_pred HHHHHhcccc----CC---EEEEecCCC
Q 018246 261 LAPLLGLLKV----NG---KLVTVGLPE 281 (359)
Q Consensus 261 ~~~~~~~l~~----~G---~~v~~g~~~ 281 (359)
....++.+.+ .+ .+++++.+.
T Consensus 345 ~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 345 LKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 2334444322 12 467777654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.031 Score=49.32 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=84.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC----
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA---- 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~---- 257 (359)
.++.+||-+|+|. |..+..+++ .|.+|++++.+++.++.+.+......++..+-. .+.-....+|+|+....-
T Consensus 41 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~V~s~~~l~~~~ 117 (251)
T PRK10258 41 RKFTHVLDAGCGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAGDIE-SLPLATATFDLAWSNLAVQWCG 117 (251)
T ss_pred cCCCeEEEeeCCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcc-cCcCCCCcEEEEEECchhhhcC
Confidence 4677899999875 655555554 588999999999988888443332222211111 111111369999875431
Q ss_pred --hhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhc-CcEEEEeecCCHHHHHHHHHHHHhCCCcccE--EEEcccc
Q 018246 258 --VHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGA-RRLVGGSNVGGMKETQEMLDFCAKHNIAADI--ELVRMDQ 332 (359)
Q Consensus 258 --~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k-~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~--~~~~l~~ 332 (359)
...+..+.+.|+|+|.++......+.+.- ....+.. ...-....+.+.+++.. ++..-.+.... ..+.+++
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e-l~~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~~~~~~~~~~~~f~~ 193 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQGSLPE-LHQAWQAVDERPHANRFLPPDAIEQ---ALNGWRYQHHIQPITLWFDD 193 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCCCchHH-HHHHHHHhccCCccccCCCHHHHHH---HHHhCCceeeeeEEEEECCC
Confidence 23578889999999999887544332211 1111110 00111222333344443 33333343333 3456777
Q ss_pred HHHHHHHHHc
Q 018246 333 INTAMERLAK 342 (359)
Q Consensus 333 ~~~a~~~~~~ 342 (359)
..+.++.++.
T Consensus 194 ~~~~l~~lk~ 203 (251)
T PRK10258 194 ALSAMRSLKG 203 (251)
T ss_pred HHHHHHHHHH
Confidence 7777777764
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.01 Score=51.97 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHH-------HhcCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVK-------AAMGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~-------~~~~~~d~v 251 (359)
++++++|.|+ |.+|...++.+...|++|+++++++++.+.+.++++.+. ..|..+.+.+. +..+++|++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 84 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4678999986 999999999999999999999998877776656666432 12434433222 222478999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.++|.
T Consensus 85 i~~ag~ 90 (249)
T PRK06500 85 FINAGV 90 (249)
T ss_pred EECCCC
Confidence 998874
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.029 Score=49.91 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCC----c--EEecCCCHHHHHHhcCCccEEE-E
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGA----D--AFLVSSDPAKVKAAMGTMDYII-D 253 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~----~--~v~~~~~~~~~~~~~~~~d~vi-d 253 (359)
.+.++||++|+|. |.++..+++... .+|++++.+++-.+.+.+.++. . .++..+..+.+.+..+.+|+|+ |
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3557899999865 777777877774 5999999999988888555552 1 2333333455555455899997 4
Q ss_pred CCCC---------hhhHHHHHhccccCCEEEEe
Q 018246 254 TVSA---------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~---------~~~~~~~~~~l~~~G~~v~~ 277 (359)
.... ...+..+.+.|+++|.++.-
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3221 24578899999999999863
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.01 Score=54.38 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=54.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHhc-------CCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAAM-------GTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~-------~~~d~vi 252 (359)
.+.+|||.|+ |++|..++..+...|++|+++++++++.+.+.+++. .. ...|..+.+.+.++. +++|+++
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li 104 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI 104 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 4678999986 999999999988899999999999887766544443 22 223555554433322 4799999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|.
T Consensus 105 ~nAg~ 109 (315)
T PRK06196 105 NNAGV 109 (315)
T ss_pred ECCCC
Confidence 98873
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=52.92 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=54.8
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHH-------hcCCccEEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKA-------AMGTMDYIID 253 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~-------~~~~~d~vid 253 (359)
+.++||.|+ |++|...++.+...|++|+++++++++.+.+.+.++ .. ...|..+.+.+.+ ..+++|++++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~ 84 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVN 84 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 578999986 999999999888899999999999988777655555 22 2235555543322 2257899999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
+.|.
T Consensus 85 ~ag~ 88 (273)
T PRK07825 85 NAGV 88 (273)
T ss_pred CCCc
Confidence 9874
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.024 Score=49.87 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=53.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+++|||.|+ |.+|...++.+...|++|+++++++++.+.+..++ +.. ...|..+.+.+..+ .+++
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV 82 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999986 99999999988888999999999988765553332 322 22355554433332 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.+++.
T Consensus 83 d~vi~~a~~ 91 (258)
T PRK12429 83 DILVNNAGI 91 (258)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0099 Score=52.79 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-E--EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-A--FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~~ 248 (359)
++.++||.|+ |++|...++.+...|++|+++++++++.+.+.+.+ +.. . ..|..+.+.+.++ .+++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 88 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL 88 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 89999999999999999999999987766553332 322 1 2455555443332 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 89 d~vi~~Ag~ 97 (263)
T PRK07814 89 DIVVNNVGG 97 (263)
T ss_pred CEEEECCCC
Confidence 999998873
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.011 Score=52.54 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHH----h---cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKA----A---MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~----~---~~~~d~v 251 (359)
++++++|.|+ |++|..+++.+...|++|+++++++++.+.+.+..+.+ ...|..+.+.+.+ . .+.+|++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 83 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL 83 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence 4688999986 99999999999999999999999988777764444422 1234444432222 2 2478999
Q ss_pred EECCC
Q 018246 252 IDTVS 256 (359)
Q Consensus 252 id~~g 256 (359)
+++.|
T Consensus 84 i~~Ag 88 (262)
T TIGR03325 84 IPNAG 88 (262)
T ss_pred EECCC
Confidence 99986
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.011 Score=52.98 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=74.4
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+.......++..+---.|++|.|+|. +.+|.-.+.++...|++|++..+....
T Consensus 137 ~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~--------------------- 195 (301)
T PRK14194 137 VLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTD--------------------- 195 (301)
T ss_pred CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCC---------------------
Confidence 3567777777777776665468999999997 599999999999999999998655322
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+.+.....|+|+-++|.+..+...+ +++|..++++|..
T Consensus 196 l~e~~~~ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin 233 (301)
T PRK14194 196 AKALCRQADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN 233 (301)
T ss_pred HHHHHhcCCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence 2333456799999999987666554 8999999999864
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.015 Score=49.95 Aligned_cols=98 Identities=24% Similarity=0.252 Sum_probs=64.4
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~ 250 (359)
...++++++||-+|+|. |..+..+++..+ .+|+.++.+++-.+.+.+. .|.. .++..+..... .-...||+
T Consensus 71 ~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~ 148 (212)
T PRK13942 71 LLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDR 148 (212)
T ss_pred HcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCE
Confidence 33458999999998764 556677777665 4999999998877666333 3432 22222211100 01247999
Q ss_pred EEECCCChhhHHHHHhccccCCEEEEe
Q 018246 251 IIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 251 vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
|+-............+.|+++|+++..
T Consensus 149 I~~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 149 IYVTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred EEECCCcccchHHHHHhhCCCcEEEEE
Confidence 987665555567889999999998875
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=52.16 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc---EEecCCCHHHHHHhc------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD---AFLVSSDPAKVKAAM------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~------~~~ 248 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++.+.+.+++ +.+ ...|-.+.+.+..+. +++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 4788999986 89999999999999999999999988776654433 322 223445543333221 479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++++.|.
T Consensus 87 D~lv~nag~ 95 (263)
T PRK08339 87 DIFFFSTGG 95 (263)
T ss_pred cEEEECCCC
Confidence 999999874
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=42.75 Aligned_cols=86 Identities=24% Similarity=0.350 Sum_probs=60.3
Q ss_pred EEEEECCchHHHHHHHHHHHCC---CeEEEE-eCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVI-STSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g---~~V~~v-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+|.|+|+|.+|.+.+.-+...| .+|+++ .+++++.+.+.++++...... +.. ++.+..|+||-|+.... +
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~-~~~----~~~~~advvilav~p~~-~ 74 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD-DNE----EAAQEADVVILAVKPQQ-L 74 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE-EHH----HHHHHTSEEEE-S-GGG-H
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC-ChH----HhhccCCEEEEEECHHH-H
Confidence 4778899999999999999999 689965 999999999878888654431 111 22236899999999876 5
Q ss_pred HHHHhc---cccCCEEEEe
Q 018246 262 APLLGL---LKVNGKLVTV 277 (359)
Q Consensus 262 ~~~~~~---l~~~G~~v~~ 277 (359)
...++. ..++..++.+
T Consensus 75 ~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 75 PEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhhccCCCEEEEe
Confidence 444444 4455555554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=52.89 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHH-CCC-eEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEE
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKA-FGL-KVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~-~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~v 251 (359)
+...+ ....+++|+|+|..|.+.+..+.. .+. +|.+.++++++.+.+.+++... .+. . +.+.+...+.|+|
T Consensus 118 ~~La~-~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~---~~~~~av~~aDiV 192 (304)
T PRK07340 118 RTLAP-APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P---LDGEAIPEAVDLV 192 (304)
T ss_pred HHhCC-CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E---CCHHHHhhcCCEE
Confidence 34444 466789999999999998888864 576 8999999999888776766421 111 1 1233444689999
Q ss_pred EECCCChh-hHHHHHhccccCCEEEEecCCCC-CeeeCHH
Q 018246 252 IDTVSAVH-SLAPLLGLLKVNGKLVTVGLPEK-PLEVPIF 289 (359)
Q Consensus 252 id~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~ 289 (359)
+.|+++.. .+.. .++||-.+..+|.... ...++..
T Consensus 193 itaT~s~~Pl~~~---~~~~g~hi~~iGs~~p~~~El~~~ 229 (304)
T PRK07340 193 VTATTSRTPVYPE---AARAGRLVVAVGAFTPDMAELAPR 229 (304)
T ss_pred EEccCCCCceeCc---cCCCCCEEEecCCCCCCcccCCHH
Confidence 99888655 3433 3789999999987653 3455543
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=55.05 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=55.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC--Cc-EEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG--AD-AFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g--~~-~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+++++|.|+ |++|.+.+..+...|++|+++++++++.+...+..+ .. ...|..+.+.+.+..+++|+++.+.|.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi 255 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGI 255 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence 4679999986 999999999888899999999998776544322222 11 223556666666666789999998764
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0063 Score=47.48 Aligned_cols=88 Identities=22% Similarity=0.287 Sum_probs=55.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEe-CChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+.-+|-|+|+|-+|......++..|.+|..+. ++++..+.+...++...+.+. .+.....|++|-++.... +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~------~~~~~~aDlv~iavpDda-I 81 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDL------EEILRDADLVFIAVPDDA-I 81 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----T------TGGGCC-SEEEE-S-CCH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccc------ccccccCCEEEEEechHH-H
Confidence 34578899999999999999999999888874 555566666555555444332 234567999999999987 8
Q ss_pred HHHHhccccC-----CEEEEe
Q 018246 262 APLLGLLKVN-----GKLVTV 277 (359)
Q Consensus 262 ~~~~~~l~~~-----G~~v~~ 277 (359)
...++.|... |++|.-
T Consensus 82 ~~va~~La~~~~~~~g~iVvH 102 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVH 102 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEE
T ss_pred HHHHHHHHHhccCCCCcEEEE
Confidence 8777777655 555543
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.032 Score=49.76 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=50.8
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc----EEecCCCHHHHHHh-------cCCccE
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD----AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~----~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
+++|.|+ |++|..+++.+...|++|++++++++..+.+.++ .+.. ...|..+.+.+.++ .+++|+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV 81 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 6889886 9999999999999999999999988766554333 2322 12455554433322 246899
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.+.|.
T Consensus 82 lv~~ag~ 88 (272)
T PRK07832 82 VMNIAGI 88 (272)
T ss_pred EEECCCC
Confidence 9999974
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=52.46 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=53.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++ .+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999986 99999999999999999999999988776654443 211 12344544333332 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
.+|+++.++|.
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 79999999874
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=50.24 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=53.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--CCc-E--EecCCCHHHHHHh------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--GAD-A--FLVSSDPAKVKAA------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--g~~-~--v~~~~~~~~~~~~------~~~~d~ 250 (359)
++.++||+|+ |++|...+..+...|++|+++++++++.+.+..++ +.. . ..|..+.+.+..+ .+.+|+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 83 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV 83 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence 4678999986 99999999999899999999999988877664443 211 1 1244444333222 247899
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.++|.
T Consensus 84 lv~~ag~ 90 (263)
T PRK09072 84 LINNAGV 90 (263)
T ss_pred EEECCCC
Confidence 9999875
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.01 Score=53.19 Aligned_cols=106 Identities=9% Similarity=0.073 Sum_probs=69.9
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHcCC----cEEecCCCHHHHHH--
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKLGA----DAFLVSSDPAKVKA-- 243 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~-- 243 (359)
+..+..... .+.++|+-+|+|+.++.++.+++... .+++.++.+++..+.+.+.+.. ..-+.....+....
T Consensus 113 ~~~L~~~~~-~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~ 191 (296)
T PLN03075 113 FDLLSQHVN-GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE 191 (296)
T ss_pred HHHHHHhhc-CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc
Confidence 334444444 37789999999999999988887653 4899999999988877444421 11111111111111
Q ss_pred hcCCccEEEECC-------CChhhHHHHHhccccCCEEEEec
Q 018246 244 AMGTMDYIIDTV-------SAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 244 ~~~~~d~vid~~-------g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
..++||+||..+ .-...++...+.|+|||.++.-.
T Consensus 192 ~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 125899998765 12236789999999999988654
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.021 Score=49.58 Aligned_cols=102 Identities=14% Similarity=0.196 Sum_probs=65.4
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC---eEEEEeCC----hhhH-------HHHHHHcCCcEEecCCC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL---KVTVISTS----PKKE-------SEAISKLGADAFLVSSD 237 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~---~V~~v~~~----~~~~-------~~~~~~~g~~~v~~~~~ 237 (359)
+.+++..+.--.+.+|+|+|+|..|..++..+...|+ ++++++++ .+|. ..+.++++... .+.
T Consensus 13 ~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~~-- 89 (226)
T cd05311 13 LNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TGG-- 89 (226)
T ss_pred HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-ccC--
Confidence 4455554432467899999999999999999999997 49999998 4442 22324443221 111
Q ss_pred HHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEec
Q 018246 238 PAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 238 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
.+.+...++|++|.+++....-...++.|.++..+..+.
T Consensus 90 --~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 90 --TLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA 128 (226)
T ss_pred --CHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence 122233469999999974332246677777776666554
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.034 Score=48.31 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC---cEEe-cCCCHHHHHHhcCCccEEEEC
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA---DAFL-VSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~---~~v~-~~~~~~~~~~~~~~~d~vid~ 254 (359)
...+|++||-+|+| .|-++..+++..|- +|+++|.+++-++.+.++... ..+- ...+.+.+.--...||+|..+
T Consensus 48 ~~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~ 126 (238)
T COG2226 48 GIKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTIS 126 (238)
T ss_pred CCCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEee
Confidence 33589999998765 48888899998876 999999999998888655442 1110 011112221111378988876
Q ss_pred CCC------hhhHHHHHhccccCCEEEEecCCCC
Q 018246 255 VSA------VHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 255 ~g~------~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
.|- ..++.+..|.|+|+|+++.+.....
T Consensus 127 fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 127 FGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred ehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 652 2368899999999999998876653
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.021 Score=50.51 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.++||.|+ |.+|..+++.+...|++|+++++++++.+.+.++ .+.+. ..|..+.+.+.++ .+++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4688999987 9999999999999999999999998766555333 34332 1244454433322 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 86 d~vi~~ag~ 94 (262)
T PRK13394 86 DILVSNAGI 94 (262)
T ss_pred CEEEECCcc
Confidence 999998874
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0094 Score=53.02 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=52.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
+++++||.|+ |++|...++.+...|++|+++++++++.+...+++ +.+ ..+|..+.+.+.++ .+++
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 99999999999999999999999887765443332 322 12355555443332 2468
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|++|.+.|
T Consensus 88 D~vi~~ag 95 (264)
T PRK07576 88 DVLVSGAA 95 (264)
T ss_pred CEEEECCC
Confidence 99998876
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=51.84 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CC-c---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GA-D---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~-~---~v~~~~~~~~~~~~-------~~ 246 (359)
.+++++|.|+ +++|.+.++.+...|++|+++++++++.+...+++ +. + ...|..+.+.+.++ .+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4688999986 99999999999999999999999988766543332 11 1 12355555433332 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
.+|++++++|.
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 78999999984
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.015 Score=49.64 Aligned_cols=96 Identities=24% Similarity=0.207 Sum_probs=63.7
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHhcCCccEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~d~v 251 (359)
.++++++||-+|+|. |..++.+++..+ .+|+.++.+++-.+.+.+ +.+.. .++..+..+... ....||+|
T Consensus 69 ~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I 146 (205)
T PRK13944 69 EPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAI 146 (205)
T ss_pred CCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEE
Confidence 347899999998754 666677777664 599999999887665533 33422 223222111111 12479999
Q ss_pred EECCCChhhHHHHHhccccCCEEEEe
Q 018246 252 IDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 id~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
+-+.........+.+.|+++|+++..
T Consensus 147 i~~~~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 147 IVTAAASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred EEccCcchhhHHHHHhcCcCcEEEEE
Confidence 87766555457888999999999764
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=51.62 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=73.2
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+.......++...---.|++|+|+|. ..+|.-.+.++...|++|++..+... .
T Consensus 136 ~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~---------------------~ 194 (285)
T PRK14189 136 LFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR---------------------D 194 (285)
T ss_pred CCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC---------------------C
Confidence 3567776666666766654458999999997 55699999999999999998653321 1
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.......|+|+-++|.+..+.. ..++++..++++|...
T Consensus 195 l~~~~~~ADIVV~avG~~~~i~~--~~ik~gavVIDVGin~ 233 (285)
T PRK14189 195 LAAHTRQADIVVAAVGKRNVLTA--DMVKPGATVIDVGMNR 233 (285)
T ss_pred HHHHhhhCCEEEEcCCCcCccCH--HHcCCCCEEEEccccc
Confidence 33444578999999998875544 8899999999999653
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.021 Score=50.67 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=54.1
Q ss_pred CCCCEEEEECC-c-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCcEE----ecCCCHHHHHHh-------
Q 018246 182 EPGKHLGVAGL-G-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGADAF----LVSSDPAKVKAA------- 244 (359)
Q Consensus 182 ~~g~~VlI~G~-g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~~v----~~~~~~~~~~~~------- 244 (359)
..++++||.|+ | ++|.++++.+...|++|+++++++++.+...++ ++...+ .|..+.+.+.++
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45789999986 6 799999999999999999999988776555332 343222 255554433332
Q ss_pred cCCccEEEECCCC
Q 018246 245 MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ~~~~d~vid~~g~ 257 (359)
.+.+|+++.++|.
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 2478999999984
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.013 Score=52.45 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=54.0
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhc-------CCccEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAM-------GTMDYII 252 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~-------~~~d~vi 252 (359)
++++||.|+ |++|...++.+...|++|+++++++++.+.+.+..+.. ...|..+.+.+.++. +++|+++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv 83 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV 83 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 567999986 99999999999889999999999988877664433321 123555554433322 3689999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
.+.|.
T Consensus 84 ~~ag~ 88 (277)
T PRK06180 84 NNAGY 88 (277)
T ss_pred ECCCc
Confidence 99885
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.048 Score=49.51 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh--HHH---HHHHcCCcE---EecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK--ESE---AISKLGADA---FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~--~~~---~~~~~g~~~---v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|..++..+...|++|+++.++.+. .+. .+++.|.+. ..|..+.+.+.++ .+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 133 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG 133 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence 4678999986 999999999999999999888765331 122 223445332 1344554333322 24
Q ss_pred CccEEEECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++|++|.++|.. ..++.+...|+.+|+++.++...
T Consensus 134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~ 194 (300)
T PRK06128 134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQ 194 (300)
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcc
Confidence 799999988741 01234455567788999886543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=53.13 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEECCCChh----
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAMGTMDYIIDTVSAVH---- 259 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~---- 259 (359)
+|+|+|+ |.+|...++.+...|.+|.+++|+.++...+ ...+.+.+. |..+.+.+.....++|+||++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~ 80 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLY 80 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCcc
Confidence 6899986 9999999999999999999999987665544 445654432 45566667777779999999876321
Q ss_pred --------hHHHHHhccccCC--EEEEecCC
Q 018246 260 --------SLAPLLGLLKVNG--KLVTVGLP 280 (359)
Q Consensus 260 --------~~~~~~~~l~~~G--~~v~~g~~ 280 (359)
....+++.++..| +++.++..
T Consensus 81 ~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 81 NAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred chhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 0123445454444 78887653
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.032 Score=49.84 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=52.9
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-E--EecCCCHHHHHHh-------cCCccEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-A--FLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~--v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
+.+|||.|+ |.+|..+++.+...|++|+++++++++.+.+.+.++.. . -.|..+.+.+.++ .+++|+++
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 82 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV 82 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 467999986 99999999988888999999999988877664444422 1 2344444333222 24789999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
.+.|.
T Consensus 83 ~~ag~ 87 (275)
T PRK08263 83 NNAGY 87 (275)
T ss_pred ECCCC
Confidence 99874
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.016 Score=52.14 Aligned_cols=75 Identities=27% Similarity=0.461 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~-------~~~ 248 (359)
.+.++||.|+ |++|...++.+...|++|++++++.++.+...+++ +... ..|..+.+.+.++. +.+
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3578999986 99999999999889999999999877665553433 3221 22444444443332 368
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.++|.
T Consensus 85 d~vi~~Ag~ 93 (287)
T PRK06194 85 HLLFNNAGV 93 (287)
T ss_pred CEEEECCCC
Confidence 999999885
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=51.44 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=54.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+++ +.+ ...|..+.+.+.++ .+++
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI 87 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4788999986 99999999999999999999999988776664433 322 22355554433332 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 88 d~lv~~ag~ 96 (253)
T PRK05867 88 DIAVCNAGI 96 (253)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=50.37 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=52.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
+++++||.|+ |++|+.+++.+...|++|+++++++++.+.+.++ .+.. ...|-.+.+.+.++ .+++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL 83 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5788999986 9999999999999999999999998776555332 2432 22344444333221 2468
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|++|.++|
T Consensus 84 d~vi~~ag 91 (253)
T PRK08217 84 NGLINNAG 91 (253)
T ss_pred CEEEECCC
Confidence 99999887
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=51.24 Aligned_cols=75 Identities=25% Similarity=0.363 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |.+|...++.+...|++|+++++++++.+.+.+++ |... ..|..+.+.+..+ .+.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 88 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI 88 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 5789999986 99999999999889999999999987765543332 3221 1255554443333 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.+.|.
T Consensus 89 d~li~~ag~ 97 (255)
T PRK07523 89 DILVNNAGM 97 (255)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.023 Score=50.10 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHH----h---cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKA----A---MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~----~---~~~~d~v 251 (359)
.|+++||.|+ |.+|..++..+...|++|+++++++++.+...++++.. ...|..+.+.+.+ + .+.+|++
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l 88 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDAL 88 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 5788999986 99999999999889999999998877766654555532 2234455443322 2 2368999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.|.
T Consensus 89 i~~ag~ 94 (255)
T PRK05717 89 VCNAAI 94 (255)
T ss_pred EECCCc
Confidence 998874
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=51.69 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++++.+.+++ +.+. ..|-.+.+.+.++ .+.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 84 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV 84 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 99999999999999999999999887776554433 3321 2354554443332 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++++.|.
T Consensus 85 d~li~nAg~ 93 (275)
T PRK05876 85 DVVFSNAGI 93 (275)
T ss_pred CEEEECCCc
Confidence 999998873
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.014 Score=51.40 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|...+..+...|++|+++++++++.+.+.+++ +.+. ..|..+.+.+.++ .+.+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL 84 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999986 99999999999999999999999988776654433 3221 2344454433332 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.++|.
T Consensus 85 d~li~~ag~ 93 (254)
T PRK07478 85 DIAFNNAGT 93 (254)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.015 Score=51.33 Aligned_cols=75 Identities=28% Similarity=0.364 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC-c--EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA-D--AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~-~--~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+++++|.|+ |.+|..++..+...|++|+++++++++.+.+...+ +. . ...|..+.+.+.++ .+.+
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTI 87 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 5789999986 99999999999999999999999988876653332 21 1 22344444333332 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 88 d~li~~ag~ 96 (258)
T PRK06949 88 DILVNNSGV 96 (258)
T ss_pred CEEEECCCC
Confidence 999999884
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.019 Score=50.66 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=53.4
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHhcC-CccEEEECC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAAMG-TMDYIIDTV 255 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~-~~d~vid~~ 255 (359)
+.++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+ ..+.. ...|..+.+.+..... ++|++|.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 357999986 999999999999999999999998776554422 22321 2235555555555444 899999998
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
|.
T Consensus 82 g~ 83 (257)
T PRK09291 82 GI 83 (257)
T ss_pred Cc
Confidence 73
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.033 Score=50.93 Aligned_cols=98 Identities=23% Similarity=0.214 Sum_probs=65.5
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHH-HCCC-eEEEEeCChhhHHHHHHHcC---CcEEecCCCHHHHHHhcCCccEE
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGK-AFGL-KVTVISTSPKKESEAISKLG---ADAFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~-~~g~-~V~~v~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~v 251 (359)
...+ ....+|+|+|+|..|.+.+.... ..+. +|++.+|++++.+.+.+++. .. +....+ ..+...+.|+|
T Consensus 119 ~La~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~~~---~~~av~~aDIV 193 (314)
T PRK06141 119 YLAR-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVVTD---LEAAVRQADII 193 (314)
T ss_pred HhCC-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEeCC---HHHHHhcCCEE
Confidence 3444 56788999999999999886444 3565 89999999999887766653 22 111122 23344689999
Q ss_pred EECCCChh-hHHHHHhccccCCEEEEecCCC
Q 018246 252 IDTVSAVH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.++++.. .+.. +.++++-.+..+|...
T Consensus 194 i~aT~s~~pvl~~--~~l~~g~~i~~ig~~~ 222 (314)
T PRK06141 194 SCATLSTEPLVRG--EWLKPGTHLDLVGNFT 222 (314)
T ss_pred EEeeCCCCCEecH--HHcCCCCEEEeeCCCC
Confidence 98887653 1222 5678887666666543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.019 Score=51.65 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=73.0
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEe-CChhhHHHHHHHcCCcEEecCCCHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
..+||+..+.+..++...---.|++|+|+| .+.+|.-.+.++...|+.|++.. ++.+
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~--------------------- 194 (296)
T PRK14188 136 ALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD--------------------- 194 (296)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC---------------------
Confidence 356777666666676655435899999999 69999999999999999999984 4421
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+|+-++|.+..+...+ +++|..++++|...
T Consensus 195 -l~e~~~~ADIVIsavg~~~~v~~~~--lk~GavVIDvGin~ 233 (296)
T PRK14188 195 -LPAVCRRADILVAAVGRPEMVKGDW--IKPGATVIDVGINR 233 (296)
T ss_pred -HHHHHhcCCEEEEecCChhhcchhe--ecCCCEEEEcCCcc
Confidence 1233346799999999988566544 89999999998753
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.038 Score=48.27 Aligned_cols=72 Identities=15% Similarity=0.059 Sum_probs=49.6
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHhc----CCccEEEECCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAAM----GTMDYIIDTVS 256 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~----~~~d~vid~~g 256 (359)
.+++|.|+ |++|...+..+...|++|+++++++++.+.+.+... .. ...|-.+.+.+.++. ...|.++.+.|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 46889886 999999888888889999999999888777633322 21 234555555444433 24677776665
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.014 Score=53.44 Aligned_cols=75 Identities=25% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----C-Cc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----G-AD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g-~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.|++++|.|+ +++|.+++..+...|++|++++|++++.+.+.+++ + .. ..+|-.+.+.+.++ .+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 4688999986 99999999988889999999999988766554432 1 11 12355554443332 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
.+|++++++|.
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 78999998873
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=51.10 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
++.+++|.|+ |++|...+..+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+..+ .+.+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV 83 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence 5678999986 99999999999999999999999987766554433 321 23344544433322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 84 d~vi~~ag~ 92 (258)
T PRK07890 84 DALVNNAFR 92 (258)
T ss_pred cEEEECCcc
Confidence 999998874
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.021 Score=53.44 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|.+|.|+|.|.+|+..++.++.+|.+|++.+++....+.. +.+|.... . .+.++....|+|+.+.....
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~-~~~g~~~~---~---~l~ell~~aDvV~l~lPlt~~T~ 263 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE-QELGLTYH---V---SFDSLVSVCDVVTIHCPLHPETE 263 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhH-hhcCceec---C---CHHHHhhcCCEEEEcCCCCHHHH
Confidence 57899999999999999999999999999999876333322 34554321 1 24455667899988776332
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..+|.++-
T Consensus 264 ~li~~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 264 HLFDADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred HHhCHHHHhcCCCCcEEEECCC
Confidence 12 357888999998888863
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.034 Score=49.75 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=61.4
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh------cCCccEEE
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA------MGTMDYII 252 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~------~~~~d~vi 252 (359)
++++|.|+|++|..++..+. .|++|+++++++++.+.+.+++ |.+ ...|-.+.+.+..+ .+++|+++
T Consensus 3 k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li 81 (275)
T PRK06940 3 EVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLV 81 (275)
T ss_pred CEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEE
Confidence 57888899999999988885 7999999999887665543332 322 12355554333222 14799999
Q ss_pred ECCCChh------------------hHHHHHhccccCCEEEEecCC
Q 018246 253 DTVSAVH------------------SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 253 d~~g~~~------------------~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+++|... .++.+...+..+|+++.++..
T Consensus 82 ~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~ 127 (275)
T PRK06940 82 HTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQ 127 (275)
T ss_pred ECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEec
Confidence 9998421 123344455666777776543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.024 Score=48.85 Aligned_cols=96 Identities=26% Similarity=0.305 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHH---HcCCcE--EecCCCHHHHHHhcCCccEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAIS---KLGADA--FLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~d~vi 252 (359)
.++++++||-+|+|. |..++.+++..+. +|+.++.+++..+.+.+ +.|.+. ++..+..+.. .....||+++
T Consensus 74 ~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii 151 (215)
T TIGR00080 74 ELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIY 151 (215)
T ss_pred CCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEE
Confidence 358999999998764 5566677776653 79999999887766633 344322 2211111110 1123799998
Q ss_pred ECCCChhhHHHHHhccccCCEEEEe
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
-............+.|+++|+++..
T Consensus 152 ~~~~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAAGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCCcccccHHHHHhcCcCcEEEEE
Confidence 6655555467888999999998865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.059 Score=47.72 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=64.0
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCC---hhhHHHHHHHc-CCc---EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTS---PKKESEAISKL-GAD---AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~---~~~~~~~~~~~-g~~---~v~~~~~~~~~~~~-------~ 245 (359)
.|++++|.|+ +++|.++++.+...|++|++++++ +++++.+.+++ +.. ...|-.+.+.+..+ .
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 4688999986 599999999988899999998754 34455554444 221 12355554333222 2
Q ss_pred CCccEEEECCCCh-------h----------------------hHHHHHhccccCCEEEEecCCC
Q 018246 246 GTMDYIIDTVSAV-------H----------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 246 ~~~d~vid~~g~~-------~----------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+|++++++|.. . ....++..|+++|+++.++...
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~ 150 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLG 150 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccC
Confidence 4799999987631 0 0123455667789999887644
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.018 Score=51.07 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=54.2
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH---HHcC-C-cEEecCCCHHHHHHh-------cCCc
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI---SKLG-A-DAFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~---~~~g-~-~~v~~~~~~~~~~~~-------~~~~ 248 (359)
-.|+.|||.|+ +++|++.++=...+|+++++.+.+.+..++.. ++.| + .++.|-++.+.+.+. .+.+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence 37899999986 89999877777778999999997776544432 3334 2 456676665444333 3589
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|-
T Consensus 116 ~ILVNNAGI 124 (300)
T KOG1201|consen 116 DILVNNAGI 124 (300)
T ss_pred eEEEecccc
Confidence 999999884
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=53.50 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---c-E--EecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---D-A--FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---~-~--v~~~~~~~~~~~~~-------~~~ 248 (359)
.+++++|.|+ |++|..+++.+...|++|+++++++++.+.+.+++.. . . ..|-.+.+.+.++. +.+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 84 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL 84 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence 4678999986 9999999998888999999999998887666555431 1 1 23445544333322 369
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|++|+++|
T Consensus 85 D~li~nAg 92 (322)
T PRK07453 85 DALVCNAA 92 (322)
T ss_pred cEEEECCc
Confidence 99999987
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.014 Score=51.17 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC--C---cEEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG--A---DAFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g--~---~~v~~~~~~~~~~~~-------~~~~d 249 (359)
.+.++||.|+ |.+|..+++.+...|++|+++++++++.+.+...+. . ....|..+.+.+..+ .+.+|
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 83 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD 83 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4578999986 999999999988899999999999887766544433 1 122344554444332 24789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|.+.|.
T Consensus 84 ~vi~~ag~ 91 (251)
T PRK07231 84 ILVNNAGT 91 (251)
T ss_pred EEEECCCC
Confidence 99998875
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.02 Score=49.56 Aligned_cols=71 Identities=25% Similarity=0.294 Sum_probs=52.5
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhc----CCccEEEECCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAM----GTMDYIIDTVS 256 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~----~~~d~vid~~g 256 (359)
+++|.|+ |++|...++.+...|++|+++++++++.+.+.++.+...+ .|..+.+.+..+. +.+|+++++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag 78 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA 78 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence 4788876 9999999999988999999999998887776555554432 4555554444332 36899998865
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=50.41 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=51.2
Q ss_pred CCCEEEEECCc---hHHHHHHHHHHHCCCeEEEEeCChhh---HHHHHHHcCCcE--EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGLG---GLGHVAVKIGKAFGLKVTVISTSPKK---ESEAISKLGADA--FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~g---~vG~~a~~la~~~g~~V~~v~~~~~~---~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|++ ++|.++++.+...|++|++++++++. .+.+.++.|... ..|-.+.+.+..+ .+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK 85 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 46889999874 89999999999999999999877532 233333445332 2355554433332 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 86 iD~lVnnAG~ 95 (271)
T PRK06505 86 LDFVVHAIGF 95 (271)
T ss_pred CCEEEECCcc
Confidence 9999999873
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.028 Score=50.08 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=73.2
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHH
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 241 (359)
..||+..+.+..++...---.|++++|+|- ..+|.-.+.++...|+.|++..+.... +
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~---------------------l 196 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKN---------------------L 196 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCC---------------------H
Confidence 467777777777777654357999999996 569999999999999999998754221 3
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
++.....|+++.++|.+..+.. ..++++..++++|..
T Consensus 197 ~~~~~~ADIvi~avG~p~~v~~--~~vk~gavVIDvGin 233 (285)
T PRK10792 197 RHHVRNADLLVVAVGKPGFIPG--EWIKPGAIVIDVGIN 233 (285)
T ss_pred HHHHhhCCEEEEcCCCcccccH--HHcCCCcEEEEcccc
Confidence 3444578999999998884443 788999999999854
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.016 Score=54.17 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=65.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|++|.|+|.|.+|...++.++.+|.+|++.+++....+.. ++.|+..+ +.+.++....|+|+.+.....
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-~~~g~~~~------~~l~ell~~sDvV~l~lPlt~~T~ 270 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-KETGAKFE------EDLDAMLPKCDVVVINTPLTEKTR 270 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-hhcCceec------CCHHHHHhhCCEEEEeCCCCHHHH
Confidence 68899999999999999999999999999999875433333 45554321 124455567899988776322
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..+|.++-
T Consensus 271 ~li~~~~l~~mk~ga~lIN~aR 292 (386)
T PLN03139 271 GMFNKERIAKMKKGVLIVNNAR 292 (386)
T ss_pred HHhCHHHHhhCCCCeEEEECCC
Confidence 12 357888999998888863
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.036 Score=46.51 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHH---HHcCCcEE--ecCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAI---SKLGADAF--LVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~---~~~g~~~v--~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+.++.+||-+|+|. |..+..+++.. +.+|+.++.+++..+.+. ++.+.+.+ +..+ ...... .+.+|+|+..
T Consensus 43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d-~~~~~~-~~~fDlV~~~ 119 (187)
T PRK00107 43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR-AEEFGQ-EEKFDVVTSR 119 (187)
T ss_pred cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc-HhhCCC-CCCccEEEEc
Confidence 45688999988753 44455555544 569999999988665552 34454322 2111 111111 3479999864
Q ss_pred CCC--hhhHHHHHhccccCCEEEEe
Q 018246 255 VSA--VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~--~~~~~~~~~~l~~~G~~v~~ 277 (359)
... ...+..+.+.|+++|+++.+
T Consensus 120 ~~~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 120 AVASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred cccCHHHHHHHHHHhcCCCeEEEEE
Confidence 332 23567889999999999987
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=52.96 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=64.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|++|.|+|.|.+|...++.++.+|.+|++.++..++.. +..... ..+.+.++....|+|+.+.....
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~------~~~~~~---~~~~l~e~l~~aDvvv~~lPlt~~T~ 205 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP------GVQSFA---GREELSAFLSQTRVLINLLPNTPETV 205 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC------Cceeec---ccccHHHHHhcCCEEEECCCCCHHHH
Confidence 678999999999999999999999999999987654321 222221 12345566678899998887433
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..+|.+|-
T Consensus 206 ~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 206 GIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred HHhHHHHHhcCCCCcEEEECCC
Confidence 12 357889999999999864
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.023 Score=50.85 Aligned_cols=75 Identities=23% Similarity=0.323 Sum_probs=53.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c---EEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
.++++||.|+ |++|.+.++.+...|++|++++++++..+.+.++++. . ...|-.+.+.+..+ .+++|
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id 96 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD 96 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 4678999986 9999999998888999999999887766555444432 1 12355555444332 24799
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 97 ~li~~Ag~ 104 (280)
T PLN02253 97 IMVNNAGL 104 (280)
T ss_pred EEEECCCc
Confidence 99998874
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.024 Score=50.02 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=53.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|...+..+...|++|+++++++++.+.+.+++ +.+ ...|..+.+.+.++ .+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4788999986 99999999999999999999999988766554332 221 12344444333222 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|+++.+.|.
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 79999999985
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.027 Score=48.01 Aligned_cols=77 Identities=19% Similarity=0.340 Sum_probs=50.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh-------------------hHHHH---HHHcCCc-EE--ec-C
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK-------------------KESEA---ISKLGAD-AF--LV-S 235 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~-------------------~~~~~---~~~~g~~-~v--~~-~ 235 (359)
.+.+|+|+|+|++|..+++.+...|. ++++++.+.- |.+.+ ++++... .+ ++ .
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 45789999999999999999999998 8999986621 11111 1233321 11 11 1
Q ss_pred CCHHHHHHhcCCccEEEECCCChh
Q 018246 236 SDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 236 ~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
-+.+.+.++..++|+|++|.++..
T Consensus 100 i~~~~~~~~~~~~D~Vi~~~d~~~ 123 (202)
T TIGR02356 100 VTAENLELLINNVDLVLDCTDNFA 123 (202)
T ss_pred CCHHHHHHHHhCCCEEEECCCCHH
Confidence 112334455568999999998876
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.095 Score=40.02 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=63.3
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChh---hH
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVH---SL 261 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~---~~ 261 (359)
|+|+|.|.+|...++.++..+.+|++++.++++.+.+ ++.|...+. |..+.+.+.++. ..++.++-+.+... .+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-REEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-HhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 6788999999999999999777999999999998888 666755433 334455555553 48999988887664 12
Q ss_pred HHHHhccccCCEEEEe
Q 018246 262 APLLGLLKVNGKLVTV 277 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~ 277 (359)
....+.+.+..+++..
T Consensus 80 ~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 80 ALLARELNPDIRIIAR 95 (116)
T ss_dssp HHHHHHHTTTSEEEEE
T ss_pred HHHHHHHCCCCeEEEE
Confidence 2344455566666654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.027 Score=46.21 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=59.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH--
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP-- 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~-- 263 (359)
+|-++|.|.+|...+.-+...|.+|++.++++++.+.+ .+.|+... .+ ..++....|+|+-|+........
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~-~~~g~~~~--~s----~~e~~~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEAL-AEAGAEVA--DS----PAEAAEQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHH-HHTTEEEE--SS----HHHHHHHBSEEEE-SSSHHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhh-HHhhhhhh--hh----hhhHhhcccceEeecccchhhhhhh
Confidence 68899999999999999999999999999999999888 45564433 12 22233346999999988554444
Q ss_pred ----HHhccccCCEEEEecCCC
Q 018246 264 ----LLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 264 ----~~~~l~~~G~~v~~g~~~ 281 (359)
+...+.++..+++++...
T Consensus 76 ~~~~i~~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMSTIS 97 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-SS--
T ss_pred hhhHHhhccccceEEEecCCcc
Confidence 344566677777775543
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.027 Score=48.92 Aligned_cols=74 Identities=8% Similarity=0.089 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cC-C
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MG-T 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~-~ 247 (359)
.|++++|.|+ +++|++.+..+...|++|+++++++++++.+.+ +.+.+ ...|..+.+.+.++ .+ .
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA 83 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999986 899999999998999999999999988766533 33432 22344444433322 24 6
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|+++++.|
T Consensus 84 iD~li~nag 92 (227)
T PRK08862 84 PDVLVNNWT 92 (227)
T ss_pred CCEEEECCc
Confidence 999999986
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.031 Score=48.01 Aligned_cols=99 Identities=19% Similarity=0.322 Sum_probs=61.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh------hhHHHH----------------HHHcCCc-EEe---cC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP------KKESEA----------------ISKLGAD-AFL---VS 235 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~------~~~~~~----------------~~~~g~~-~v~---~~ 235 (359)
+.++|+|+|.|++|.+++..+...|. ++.+++..+ .|.-.+ +++.+.. +|- +.
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 45789999999999999999999999 888888443 221111 1122211 111 11
Q ss_pred CCHHHHHHhcC-CccEEEECCCChhh-HHHHHhccccCCEEEEecCCC
Q 018246 236 SDPAKVKAAMG-TMDYIIDTVSAVHS-LAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 236 ~~~~~~~~~~~-~~d~vid~~g~~~~-~~~~~~~l~~~G~~v~~g~~~ 281 (359)
-.++.+.++.. ++|+|+||..+-.+ ...+..|.+.+=.++..++..
T Consensus 109 ~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 109 ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 11244555544 89999999997552 233344566666777776544
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.024 Score=50.07 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=53.0
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----c-EEecCCCHHHHHHh-------cCCccE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----D-AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~-~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
+.+|||.|+ |++|...+..+...|++|+++++++++.+.+.+++.. . ...|..+.+.+.++ .+.+|+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 357999986 9999999999988999999999998887766454431 1 22355554443332 235899
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.++|.
T Consensus 82 lv~~ag~ 88 (257)
T PRK07024 82 VIANAGI 88 (257)
T ss_pred EEECCCc
Confidence 9998873
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.033 Score=51.33 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=64.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHH-CCC-eEEEEeCChhhHHHHHHHc----CCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKA-FGL-KVTVISTSPKKESEAISKL----GADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~-~g~-~V~~v~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+...+++|+|+|..|.+.+..+.. .+. +|.+.++++++.+.+.+++ |.. +....+ +.+.....|+|+.++
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~~d---~~~al~~aDiVi~aT 205 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVARD---VHEAVAGADIIVTTT 205 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEeCC---HHHHHccCCEEEEee
Confidence 445789999999999987776664 565 8999999999988776654 332 221222 234445789999988
Q ss_pred CChh-hHHHHHhccccCCEEEEecCCC
Q 018246 256 SAVH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 256 g~~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+... .+.. ..++++-.+..+|...
T Consensus 206 ~s~~p~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 206 PSEEPILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred CCCCcEecH--HHcCCCceEEeeCCCC
Confidence 7654 2333 3467877887777643
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.067 Score=45.69 Aligned_cols=118 Identities=16% Similarity=0.043 Sum_probs=76.1
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh-hhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP-KKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
.|..|||.|+|.+|..=+.+....|++|+++...- ++...+.++.+...+- ..+......++++|+-+++.+..-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~----~~~~~~~~~~~~lviaAt~d~~ln 86 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE----REFDAEDLDDAFLVIAATDDEELN 86 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh----cccChhhhcCceEEEEeCCCHHHH
Confidence 67899999999999999999999999999998776 4454443433322221 111111122499999999998834
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHHHH-hcCcEEEEeecC
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALV-GARRLVGGSNVG 304 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~k~~~i~g~~~~ 304 (359)
+...+..+..+.++.+........+.+...+ ...+++.-+..+
T Consensus 87 ~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G 130 (210)
T COG1648 87 ERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGG 130 (210)
T ss_pred HHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCC
Confidence 5666677777998888766543333332222 234555444443
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.026 Score=49.71 Aligned_cols=74 Identities=27% Similarity=0.384 Sum_probs=51.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----cEEecCCCHHHHHHh-------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----DAFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.++++||.|+ |.+|...++.+...|++|++++++++..+.. .+... ....|..+.+.+..+ .+++|+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 92 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVA-AQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI 92 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4679999986 9999999999988999999999987654433 33321 122344554433332 247899
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.++|.
T Consensus 93 vi~~ag~ 99 (255)
T PRK06841 93 LVNSAGV 99 (255)
T ss_pred EEECCCC
Confidence 9999874
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.022 Score=50.14 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=52.1
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-EE--ecCCCHHHHHHh-------cCCcc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-AF--LVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~d 249 (359)
|+++||.|+ |++|...++.+...|++|+++++++++.+.+.+++ +.. .. .|-.+.+.+.++ .+.+|
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 468999986 99999999999999999999999987766553332 322 12 244454433332 24789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+++++.|.
T Consensus 81 ~lI~~ag~ 88 (252)
T PRK07677 81 ALINNAAG 88 (252)
T ss_pred EEEECCCC
Confidence 99998873
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.028 Score=50.21 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=51.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ +++|...++.+...|++|++++++ ++.+...+++ +.+ ...|..+.+.+..+ .+.+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV 83 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 5778999986 999999999888899999999998 5544443333 321 22454554333322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++++.|.
T Consensus 84 d~li~~Ag~ 92 (272)
T PRK08589 84 DVLFNNAGV 92 (272)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.042 Score=49.01 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=72.8
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+..+.+..++...---.|++|+|+|.| .+|.-.+.++...|+.|++..+....
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~--------------------- 193 (285)
T PRK14191 135 GFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKD--------------------- 193 (285)
T ss_pred CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHH---------------------
Confidence 35677777767777666543579999999975 99999999999999999887543211
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+|+-++|.+..+. -..+++|..++++|...
T Consensus 194 l~~~~~~ADIvV~AvG~p~~i~--~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 194 LSFYTQNADIVCVGVGKPDLIK--ASMVKKGAVVVDIGINR 232 (285)
T ss_pred HHHHHHhCCEEEEecCCCCcCC--HHHcCCCcEEEEeeccc
Confidence 2334456899999999988443 35679999999998743
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.027 Score=49.68 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=52.1
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCcc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
++++||.|+ |.+|...++.+...|++|+++++++++.+.+..++ +.+ ...|..+.+.+.++ .+++|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 568899986 99999999999999999999999887765553332 322 12345554433322 24789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+++.+.|.
T Consensus 82 ~vi~~ag~ 89 (256)
T PRK08643 82 VVVNNAGV 89 (256)
T ss_pred EEEECCCC
Confidence 99999864
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.022 Score=52.79 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=64.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-----CcEEec-CCCHHHHHHhcCCccEEEECCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-----ADAFLV-SSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-----~~~v~~-~~~~~~~~~~~~~~d~vid~~g 256 (359)
.|++|.|+|.|.+|..+++.++.+|++|++.+++..+... ..++ ...+.+ ......+.++....|+|+.+..
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP 235 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE--DGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT 235 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh--hhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence 6889999999999999999999999999999986432111 1111 001110 0112235566667899998876
Q ss_pred Chh----hH-HHHHhccccCCEEEEecC
Q 018246 257 AVH----SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 257 ~~~----~~-~~~~~~l~~~G~~v~~g~ 279 (359)
... .+ ...+..|+++..+|.++-
T Consensus 236 lt~~T~~li~~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 236 LTKETAGIVNDEFLSSMKKGALLVNIAR 263 (347)
T ss_pred CChHhhcccCHHHHhcCCCCeEEEECCC
Confidence 322 12 478899999999999863
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.024 Score=50.14 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc-E--EecCCCHHHHHHh---cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD-A--FLVSSDPAKVKAA---MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~---~~~~d~v 251 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++ +.. . ..|-.+.+.+..+ .+.+|++
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 4689999986 99999999998889999999999988766653332 322 1 2344444444333 2479999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.|.
T Consensus 86 v~~ag~ 91 (259)
T PRK06125 86 VNNAGA 91 (259)
T ss_pred EECCCC
Confidence 998874
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.032 Score=49.07 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=53.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHH----Hh---c-CCccEEEEC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVK----AA---M-GTMDYIIDT 254 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~----~~---~-~~~d~vid~ 254 (359)
+++||.|+ |.+|..+++.+...|++|+++++++++.+.+ ++.+...+ .|..+.+.+. .. . +.+|.++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ 81 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM-NSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN 81 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH-HhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 47999987 9999999999999999999999999888777 56665433 3444443322 21 2 367888888
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
.|.
T Consensus 82 ag~ 84 (256)
T PRK08017 82 AGF 84 (256)
T ss_pred CCC
Confidence 764
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.1 Score=40.71 Aligned_cols=90 Identities=14% Similarity=0.345 Sum_probs=63.0
Q ss_pred EEEECC-chHHHHHHHHHHHCC--CeEEEEe--CChhhHHHHHHHcCCcEEecCCCH--HHHH-----------------
Q 018246 187 LGVAGL-GGLGHVAVKIGKAFG--LKVTVIS--TSPKKESEAISKLGADAFLVSSDP--AKVK----------------- 242 (359)
Q Consensus 187 VlI~G~-g~vG~~a~~la~~~g--~~V~~v~--~~~~~~~~~~~~~g~~~v~~~~~~--~~~~----------------- 242 (359)
|.|+|+ |.+|..+.++.++.. .+|+... ++-+.+...+++|....+.-.++. +.++
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 578997 999999999999997 5777755 555667777788998877654432 1111
Q ss_pred ---Hhc--CCccEEEECCCChhhHHHHHhccccCCEEEE
Q 018246 243 ---AAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVT 276 (359)
Q Consensus 243 ---~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 276 (359)
++. ..+|+|+.+..+...+...+..++.+-++.+
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 222 2799999988877778889999988877654
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.042 Score=46.18 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=60.1
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHH---HHHhc--CCcc
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAF-LVSSDPAK---VKAAM--GTMD 249 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~---~~~~~--~~~d 249 (359)
+...+++|++||.+|+|.-++......+..+ .+|++++.++++ ...+...+ .|..+.+. +.+.. .++|
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3455689999999998876654444444433 489999998764 11233322 23333222 22222 3699
Q ss_pred EEEECC-----CC------------hhhHHHHHhccccCCEEEEec
Q 018246 250 YIIDTV-----SA------------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 250 ~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~~g 278 (359)
+|+... |. ..++..+.+.|+++|+++...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999522 21 235778899999999998864
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.027 Score=49.76 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=54.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |.+|...++.+...|++|++++++.++.+.+.++++.. ...|-.+.+.+..+ .+.+|++
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l 84 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL 84 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4678999986 99999999999999999999999998877765555422 12244444333322 2478999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.+.
T Consensus 85 i~~ag~ 90 (257)
T PRK07067 85 FNNAAL 90 (257)
T ss_pred EECCCc
Confidence 998863
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.022 Score=50.44 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-----------HHH-------HH
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD-----------PAK-------VK 242 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-----------~~~-------~~ 242 (359)
..++..+++.|.|.+|+.++..++..|+-|...+-.+.+.+.. +++|++.+--.++ +++ +.
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv-~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQV-ESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhh-hhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 3577889999999999999999999999999998888887777 7788653321111 122 11
Q ss_pred HhcCCccEEEECCC--Ch----hhHHHHHhccccCCEEEEecCCCC-Cee--eCHHHHHhcCcEEEEeec
Q 018246 243 AAMGTMDYIIDTVS--AV----HSLAPLLGLLKVNGKLVTVGLPEK-PLE--VPIFALVGARRLVGGSNV 303 (359)
Q Consensus 243 ~~~~~~d~vid~~g--~~----~~~~~~~~~l~~~G~~v~~g~~~~-~~~--~~~~~~~~k~~~i~g~~~ 303 (359)
+...++|+||-+.- +. ......+..|+||+.+|++....+ +.. -+-.-...++.+|.|...
T Consensus 240 ~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~n 309 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTN 309 (356)
T ss_pred HHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecC
Confidence 22348999998763 21 234788999999999999964332 222 222233456788887444
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.12 Score=43.80 Aligned_cols=98 Identities=21% Similarity=0.257 Sum_probs=59.4
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEE-E
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAIS---KLGAD--AFLVSSDPAKVKAAMGTMDYI-I 252 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~v-i 252 (359)
.++++++||-+|+|. |..+..+++.. +.+|++++.+++..+.+.+ +++.. .++..+..+.+..+...+|.+ +
T Consensus 37 ~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 37 RLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence 347888888887643 33455555544 4699999999988776633 34533 233222222233333344554 4
Q ss_pred ECCCC-hhhHHHHHhccccCCEEEEec
Q 018246 253 DTVSA-VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g~-~~~~~~~~~~l~~~G~~v~~g 278 (359)
+.... ...+..+.+.|+++|+++...
T Consensus 116 ~~~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 116 EGGRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred ECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 43222 245788899999999998873
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.027 Score=51.93 Aligned_cols=88 Identities=25% Similarity=0.443 Sum_probs=64.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|++|.|+|.|.+|...++.++..|.+|++.+++.... .. ..++... . .+.++....|+|+.++....
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~----~---~l~ell~~aDiV~l~lP~t~~T~ 219 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AE-KELGAEY----R---PLEELLRESDFVSLHVPLTKETY 219 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hH-HHcCCEe----c---CHHHHHhhCCEEEEeCCCChHHh
Confidence 68899999999999999999999999999999876543 22 3445421 1 23344556899988886432
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..++.++-
T Consensus 220 ~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 220 HMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred hccCHHHHhcCCCCeEEEECcC
Confidence 12 467888999999888863
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.13 Score=44.22 Aligned_cols=116 Identities=13% Similarity=-0.067 Sum_probs=69.4
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
-.+.+|||+|+|.++.-=+..+...|++|++++..-. ++..+ .+.|.-..+. +.. -..-..++++||.|++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l-~~~~~i~~~~-r~~--~~~dl~g~~LViaATdD~~- 97 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDL-KKYGNLKLIK-GNY--DKEFIKDKHLIVIATDDEK- 97 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHH-HhCCCEEEEe-CCC--ChHHhCCCcEEEECCCCHH-
Confidence 3578999999999999888888889999999986542 33333 2333212221 111 0111258999999999888
Q ss_pred HHHHHhccc-cCCEEEEecCCCCCeeeCHHHHHhc-CcEEEEee
Q 018246 261 LAPLLGLLK-VNGKLVTVGLPEKPLEVPIFALVGA-RRLVGGSN 302 (359)
Q Consensus 261 ~~~~~~~l~-~~G~~v~~g~~~~~~~~~~~~~~~k-~~~i~g~~ 302 (359)
++..+...+ ..+.++..........|-+..++.+ .+++.-+.
T Consensus 98 vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST 141 (223)
T PRK05562 98 LNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNT 141 (223)
T ss_pred HHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEEC
Confidence 665555554 4477777654433333322223333 45554433
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.024 Score=49.70 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--CCc---EEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--GAD---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--g~~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
++.+++|.|+ |.+|...++.+...|++|+++++++++.+...+.. +.. ...|..+.+.+.++ .+++|
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 83 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD 83 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678999986 99999999988888999999999987765553333 321 12344554443332 24799
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+++.+.+.
T Consensus 84 ~vi~~ag~ 91 (252)
T PRK06138 84 VLVNNAGF 91 (252)
T ss_pred EEEECCCC
Confidence 99999884
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.095 Score=47.43 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh--hhHHHH---HHHcCCc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP--KKESEA---ISKLGAD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~--~~~~~~---~~~~g~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|.++++.+...|++|+++.++. +..+.+ .++.+.. ...|..+.+.+.++ .+
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 127 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG 127 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5678999986 9999999999999999999887543 222222 1233432 22344554333222 24
Q ss_pred CccEEEECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++|+++.+.|.. ..++.+...|+.+|+++.++...
T Consensus 128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~ 188 (294)
T PRK07985 128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQ 188 (294)
T ss_pred CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCch
Confidence 789999987631 11234455566789999887543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.083 Score=41.99 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=71.4
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHH
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 241 (359)
.++|........++..+.--.|++|+|+|- ..+|.-++.++...|++|+...+....++
T Consensus 7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------- 66 (140)
T cd05212 7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------- 66 (140)
T ss_pred ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH--------------------
Confidence 456666665666666654458999999995 89999999999999999999885432222
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.....|+|+-++|....+. -+.+++|-.++++|...
T Consensus 67 -~~v~~ADIVvsAtg~~~~i~--~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 67 -SKVHDADVVVVGSPKPEKVP--TEWIKPGATVINCSPTK 103 (140)
T ss_pred -HHHhhCCEEEEecCCCCccC--HHHcCCCCEEEEcCCCc
Confidence 23346799999999886444 45699999999887654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.026 Score=48.75 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=50.8
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHhc-----CCccEEEECCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAAM-----GTMDYIIDTVS 256 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~-----~~~d~vid~~g 256 (359)
++++|.|+ |++|...+..+...|++|+++++++++.+.+ ++++ .. ...|-.+.+.+..+. +++|+++.++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag 80 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL-QALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG 80 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH-HhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence 46889886 9999999988888999999999998876655 4443 21 223444544333322 26899998876
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 81 ~ 81 (225)
T PRK08177 81 I 81 (225)
T ss_pred c
Confidence 4
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.036 Score=47.61 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe---------cCCC-----HHH--HH-Hh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL---------VSSD-----PAK--VK-AA 244 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~---------~~~~-----~~~--~~-~~ 244 (359)
.++.+||+.|+|. |.-++-+|. .|.+|++++.++...+.+.++.+..... ...+ .+. .. ..
T Consensus 33 ~~~~rvLd~GCG~-G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGK-SLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCc-hhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4677999998864 666777765 6999999999999888764544432100 0000 000 00 01
Q ss_pred cCCccEEEECCCC--------hhhHHHHHhccccCCEEEEecC
Q 018246 245 MGTMDYIIDTVSA--------VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 245 ~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.+.+|.++|+..- ...+..+.+.|+|+|+++..+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 2358999996541 2246788999999998776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.029 Score=49.17 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=52.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+++|.|+ |.+|...++.+...|++|++++++++..+.+.+.+ +.. ...|..+.+.+..+ .+++
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999986 99999999999889999999999877654443322 221 23455554433322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.++|.
T Consensus 85 d~vi~~ag~ 93 (250)
T PRK07774 85 DYLVNNAAI 93 (250)
T ss_pred CEEEECCCC
Confidence 999999884
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.037 Score=49.44 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=51.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-----Cc-EE--ecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-----AD-AF--LVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-----~~-~v--~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |.+|..+++.+.+.|++|+++++++++.+...+++. .. .+ .|..+.+.+..+ .+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3678999986 999999999999999999999998776554433321 11 12 244444433322 23
Q ss_pred CccEEEECCC
Q 018246 247 TMDYIIDTVS 256 (359)
Q Consensus 247 ~~d~vid~~g 256 (359)
++|++|.+.|
T Consensus 86 ~~d~li~~ag 95 (276)
T PRK05875 86 RLHGVVHCAG 95 (276)
T ss_pred CCCEEEECCC
Confidence 7899999887
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.041 Score=47.82 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=65.1
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHc---CC-cEEecCCCHHHHHHhcCCccEEE
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKL---GA-DAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~---g~-~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
..+.++++||.+|+|. |..+..+++..+ .++++++.+++..+.+.+.. +. ..+...+ ........+.+|+|+
T Consensus 15 ~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 15 LAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD-ADGLPFPDGSFDAVR 92 (241)
T ss_pred cCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc-cccCCCCCCCceEEE
Confidence 3457899999999976 888889998874 59999999998887773331 11 1111111 111111124688887
Q ss_pred ECC-----CC-hhhHHHHHhccccCCEEEEecC
Q 018246 253 DTV-----SA-VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 253 d~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
... .. ...+..+.+.|+++|.++....
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 93 SDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 532 22 2357899999999999987753
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.033 Score=48.43 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=51.1
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHH----h---cCCccEEEEC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKA----A---MGTMDYIIDT 254 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~----~---~~~~d~vid~ 254 (359)
++++||.|+ |++|..+++.+...|++|+++++++++.....+..+... ..|..+.+.+.. + .+++|+++.+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ 81 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN 81 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence 457999986 999999999998999999999988765433335555432 234444333222 2 2469999998
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
.|.
T Consensus 82 ag~ 84 (236)
T PRK06483 82 ASD 84 (236)
T ss_pred Ccc
Confidence 874
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.024 Score=49.92 Aligned_cols=75 Identities=25% Similarity=0.330 Sum_probs=52.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+++++|.|+ |++|...++.+...|++|+++++++++.+.+.+ +.+.. ...|..+.+.+.++ .+.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i 85 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL 85 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4689999986 999999999888899999999999876554422 33322 12344444333332 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 86 d~li~~ag~ 94 (253)
T PRK06172 86 DYAFNNAGI 94 (253)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.06 Score=47.88 Aligned_cols=97 Identities=16% Similarity=0.272 Sum_probs=73.2
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+....+..++..+---.|++|+|+|- ..+|.-.+.+....|++|++..+....
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~--------------------- 188 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTEN--------------------- 188 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhH---------------------
Confidence 3567776666777776654458999999996 599999999999999999998765422
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+++.++|.+..+... .++++..++++|...
T Consensus 189 L~~~~~~ADIvI~Avgk~~lv~~~--~vk~GavVIDVgi~~ 227 (279)
T PRK14178 189 LKAELRQADILVSAAGKAGFITPD--MVKPGATVIDVGINQ 227 (279)
T ss_pred HHHHHhhCCEEEECCCcccccCHH--HcCCCcEEEEeeccc
Confidence 333445689999999977644443 379999999999764
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.037 Score=48.92 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=50.9
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE--EecCCCHHHHHHh-------cCCccEEE
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA--FLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~--v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
++||.|+ +++|.+.++.+...|++|+++++++++.+.+.+++ +..+ ..|..+.+.+.++ .+++|+++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li 81 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV 81 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 5889886 99999999999989999999999988766554433 3212 2344454433332 24799999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
++.|.
T Consensus 82 ~naG~ 86 (259)
T PRK08340 82 WNAGN 86 (259)
T ss_pred ECCCC
Confidence 98874
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.031 Score=51.53 Aligned_cols=88 Identities=18% Similarity=0.260 Sum_probs=64.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--------CCc---EEecCCCHHHHHHhcCCccEEEEC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--------GAD---AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--------g~~---~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+|.|+|+|.+|.+.+..+...|.+|.+.++++++.+.+ ++. |.. .+....+ ..+.....|+|+-+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i-~~~~~~~~~~~g~~~~~~~~~~~~---~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAAL-AAERENREYLPGVALPAELYPTAD---PEEALAGADFAVVA 81 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHhCcccccCCCCcCCCCeEEeCC---HHHHHcCCCEEEEE
Confidence 68999999999999999988899999999998877766 333 210 0111111 22334578999999
Q ss_pred CCChhhHHHHHhccccCCEEEEec
Q 018246 255 VSAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 255 ~g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
+.... +...++.++++-.++.+.
T Consensus 82 v~~~~-~~~v~~~l~~~~~vi~~~ 104 (328)
T PRK14618 82 VPSKA-LRETLAGLPRALGYVSCA 104 (328)
T ss_pred CchHH-HHHHHHhcCcCCEEEEEe
Confidence 99887 778888888877777663
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.076 Score=46.67 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=61.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEe-CChhhHHHHHHH---cCCcE---EecCCCHHHH----HHh------
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAISK---LGADA---FLVSSDPAKV----KAA------ 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~~~---~g~~~---v~~~~~~~~~----~~~------ 244 (359)
.++++||.|+ |++|.++++.+...|++|+++. +.+++.+....+ .+... ..|..+.+.+ .++
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 4678999986 9999999999999999998875 454544433222 23221 1233332211 111
Q ss_pred -cC--CccEEEECCCChh-------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 245 -MG--TMDYIIDTVSAVH-------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 245 -~~--~~d~vid~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+ ++|++++++|... ..+.++..++..|+++.++...
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~ 147 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 147 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcc
Confidence 12 6999999887310 1123455666779999987654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.038 Score=48.91 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=48.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.|+++||.|+ |++|...+..+...|++|+++++++++.. ... ...|-.+.+.+.++ .+.+|++++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~------~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~ 78 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYN------DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN 78 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccC------ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4689999986 99999999999999999999998765421 111 22355554433332 247999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
+.|.
T Consensus 79 ~Ag~ 82 (258)
T PRK06398 79 NAGI 82 (258)
T ss_pred CCCC
Confidence 8874
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.031 Score=48.73 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=51.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+++|.|+ |.+|...+..+...|++|+++++++++.+...++ .+.. ...|..+.+.+..+ .+++
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 3578999986 9999999998888999999999998776554333 2322 12344444333322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.+.|.
T Consensus 86 d~vi~~ag~ 94 (239)
T PRK07666 86 DILINNAGI 94 (239)
T ss_pred cEEEEcCcc
Confidence 999998874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.063 Score=48.81 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=62.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC---------cEEecCCCHHHHHHh-cCCccE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA---------DAFLVSSDPAKVKAA-MGTMDY 250 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~-~~~~d~ 250 (359)
...++|||+|+|. |.++..++++-+. +|++++.+++-.+.+.+.+.. -.++..+....+++. .+.||+
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 4467899998765 5567788887765 899999888766666333331 112222222345544 347999
Q ss_pred EEECCCC----------hhhHHHHHhccccCCEEEEec
Q 018246 251 IIDTVSA----------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 251 vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 278 (359)
|+.-... ...++.+.++|+++|.++.-+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9853332 134778899999999997643
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.031 Score=51.53 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=51.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh---------------------hHH---HHHHHcCCc----EEe
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK---------------------KES---EAISKLGAD----AFL 233 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~---------------------~~~---~~~~~~g~~----~v~ 233 (359)
.+.+|+|+|+|++|..++..+...|. ++++++.+.- +.+ ..+++++.. .+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 34689999999999999999999999 8888887631 111 112344321 111
Q ss_pred cCCCHHHHHHhcCCccEEEECCCChh
Q 018246 234 VSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 234 ~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
..-..+.+.++..++|+|+||..+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~~D~~~ 128 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDATDNFD 128 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEcCCCHH
Confidence 11123445666678999999998765
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.047 Score=52.36 Aligned_cols=88 Identities=26% Similarity=0.343 Sum_probs=60.4
Q ss_pred EEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---hH
Q 018246 186 HLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH---SL 261 (359)
Q Consensus 186 ~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~ 261 (359)
+|.|+| .|.+|.+.+..++..|.+|+++++++++.....+++|... ..+ ..+.....|+|+-|+.... .+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~---~~~---~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY---AND---NIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee---ccC---HHHHhccCCEEEEecCHHHHHHHH
Confidence 578887 6999999999999999999999999887655546777531 111 1223346788888887654 22
Q ss_pred HHHHhccccCCEEEEecC
Q 018246 262 APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~ 279 (359)
......++++..+++++.
T Consensus 76 ~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHhhCCCCCEEEEccc
Confidence 333445566667777764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.076 Score=47.79 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=62.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC-------c---EEecCCCHHHHHHhcCCccEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA-------D---AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~-------~---~v~~~~~~~~~~~~~~~~d~v 251 (359)
..++||++|+|. |..+..++++.+. +|++++.+++-.+.+.+.+.. + .++..+....+....+.+|+|
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 457899998765 6667777777665 899999999887777443421 1 223223234444434589999
Q ss_pred EECCCC----------hhhHHHHHhccccCCEEEEe
Q 018246 252 IDTVSA----------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 id~~g~----------~~~~~~~~~~l~~~G~~v~~ 277 (359)
+.-... ...+..+.+.|+++|.++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 864321 22357788999999999875
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.049 Score=44.30 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=64.7
Q ss_pred cccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH
Q 018246 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 161 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
...+||+....+..++..+.--.|++|+|+|- ..+|.-.+.++...|+.|+...+....++
T Consensus 13 ~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~------------------ 74 (160)
T PF02882_consen 13 PGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ------------------ 74 (160)
T ss_dssp TSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH------------------
T ss_pred CCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc------------------
Confidence 35667777777777777665468999999996 68999999999999999999776543332
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.....|+|+.++|.+..+. -..++++..++++|...
T Consensus 75 ---~~~~~ADIVVsa~G~~~~i~--~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 75 ---EITRRADIVVSAVGKPNLIK--ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp ---HHHTTSSEEEE-SSSTT-B---GGGS-TTEEEEE--CEE
T ss_pred ---ceeeeccEEeeeeccccccc--cccccCCcEEEecCCcc
Confidence 33346899999999887433 35789999999998643
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.033 Score=49.30 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCcc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
+.++||.|+ |.+|..+++.+...|++|++++++++..+.+.+. .+.. ...|..+.+.+.++ .+++|
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 357899986 9999999999999999999999998765544332 2322 12344444333322 24789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+++.+.|.
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 99999874
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.054 Score=44.70 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=50.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+++|.|+ +++|...+..+...|++|++++++.++.+...++ .+.. ...|..+.+.+.++ .++.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i 94 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI 94 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 8999999998888999999999887765443233 2422 12333443332221 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 95 DilVnnAG~ 103 (169)
T PRK06720 95 DMLFQNAGL 103 (169)
T ss_pred CEEEECCCc
Confidence 888888774
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.055 Score=48.33 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=52.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEEEE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++||.|+ |.+|...++.+...|.+|+++++++++.+.+.+..+.. ...|..+.+.+..+ .+++|++|.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS 82 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47899986 99999999988889999999999988877764444422 12345554433332 246899999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 83 ~ag~ 86 (276)
T PRK06482 83 NAGY 86 (276)
T ss_pred CCCC
Confidence 9874
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.028 Score=50.01 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHH-Hh-cCCccEEEECC-
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVK-AA-MGTMDYIIDTV- 255 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~-~~-~~~~d~vid~~- 255 (359)
.++++.+||-+|+|. |..+..+++..+++|++++.+++..+.+.+.... ..+- ....+... .. .+.||+|+..-
T Consensus 49 ~l~~~~~VLDiGcG~-G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~-~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 49 ELNENSKVLDIGSGL-GGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE-FEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCCCCEEEEEcCCC-ChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE-EEECCcccCCCCCCCeEEEEEhhh
Confidence 348999999998863 5556677777788999999999888777444332 1111 00011111 11 13699998621
Q ss_pred ----C---ChhhHHHHHhccccCCEEEEecC
Q 018246 256 ----S---AVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 256 ----g---~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+ -...+..+.+.|+|+|+++....
T Consensus 127 l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 127 ILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1 12356788899999999998754
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.045 Score=48.03 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEEEEC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
+++|.|+ |++|...+..+...|++|+++++++++.+.+...++.+. ..|-.+.+.+..+ .++.|+++.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ 81 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN 81 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5888886 999999999999999999999999888776645455321 2344444333322 2479999998
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 82 ag~ 84 (248)
T PRK10538 82 AGL 84 (248)
T ss_pred CCc
Confidence 874
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.027 Score=51.25 Aligned_cols=76 Identities=28% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHh-------c
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~-------~ 245 (359)
..+++|||.|+ |++|..+++.+...|++|++++++.++.+.+.+++ +.. ...|..+.+.+.++ .
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 36789999986 99999999988888999999999887755443322 111 12344554433332 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++|.++|.
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 468999998873
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.18 Score=46.17 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=58.4
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH----------HcCCc------EEecCCCHHHHHHhcCCc
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS----------KLGAD------AFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~----------~~g~~------~v~~~~~~~~~~~~~~~~ 248 (359)
++|.|+|+|.+|...++++...|.+|.+.+.+++..+.+.+ +.+.. .+-.. ..+.....+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~---~~l~~av~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV---ATIEACVADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec---CCHHHHhcCC
Confidence 57999999999999999988999999999999886654322 11110 00001 1233444689
Q ss_pred cEEEECCCChh-----hHHHHHhccccCCEEEEe
Q 018246 249 DYIIDTVSAVH-----SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 249 d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~ 277 (359)
|+|++++.... .+..+.+.++++. ++..
T Consensus 85 DlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaS 117 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDA-IIAS 117 (321)
T ss_pred CEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEE
Confidence 99999998654 2344445555554 5444
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.086 Score=46.31 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh----c-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAISKL---GAD---AFLVSSDPAKVKAA----M----- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~----~----- 245 (359)
.+.+++|.|+ |.+|...++.+...|++|++. .++.++.+.+.+++ +.. ...|-.+.+.+.+. .
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 84 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI 84 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence 3578999986 999999999998899988775 67766654443333 222 12355554433222 1
Q ss_pred ----CCccEEEECCCC
Q 018246 246 ----GTMDYIIDTVSA 257 (359)
Q Consensus 246 ----~~~d~vid~~g~ 257 (359)
.++|++|.+.|.
T Consensus 85 ~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 85 RVGTSEIDILVNNAGI 100 (254)
T ss_pred ccCCCCccEEEECCCC
Confidence 258999998874
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.054 Score=47.21 Aligned_cols=75 Identities=25% Similarity=0.334 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
++.++||.|+ |.+|..++..+...|++|++.+++.++.+.+....+... ..|-.+.+.+.++ .+++|.+
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 84 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL 84 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4678999986 999999999998899999999888887776645555321 2344444433332 2479999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.|.
T Consensus 85 i~~ag~ 90 (245)
T PRK12936 85 VNNAGI 90 (245)
T ss_pred EECCCC
Confidence 999874
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.04 Score=48.68 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.++||.|+ |.+|...++.+...|++|++++++.++.+.+.+.+ +.. ...|..+.+.+.++ .+.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i 90 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV 90 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 5688999986 99999999999989999999999988766553322 322 22355555444322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 91 d~vi~~ag~ 99 (259)
T PRK08213 91 DILVNNAGA 99 (259)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.051 Score=48.21 Aligned_cols=74 Identities=15% Similarity=0.324 Sum_probs=49.5
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChh---hHHHHHHHcCCcE--EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPK---KESEAISKLGADA--FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~ 247 (359)
.|++++|.|+ + ++|.++++.+...|++|+++++++. ..+.+.++.|... ..|-.+.+.+.++ .+.
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS 86 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5678999987 4 7999999888889999999887742 2333333345332 2455555443332 247
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|+++++.|
T Consensus 87 iDilVnnag 95 (260)
T PRK06603 87 FDFLLHGMA 95 (260)
T ss_pred ccEEEEccc
Confidence 999999886
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.033 Score=44.85 Aligned_cols=89 Identities=24% Similarity=0.273 Sum_probs=58.3
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC-------CC-HHHHHHhcCCccEEEECCCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS-------SD-PAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~-------~~-~~~~~~~~~~~d~vid~~g~~ 258 (359)
|+|+|+|.+|...+..++..|.+|..+.+.+ +.+.+ ++.|..-.... .. ..........+|++|-|+-..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc
Confidence 6899999999998888888999999999998 77765 66663221111 00 000112335899999999765
Q ss_pred h---hHHHHHhccccCCEEEEe
Q 018246 259 H---SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 259 ~---~~~~~~~~l~~~G~~v~~ 277 (359)
. .++.+...+.+...++.+
T Consensus 79 ~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 79 QLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp GHHHHHHHHCTGEETTEEEEEE
T ss_pred chHHHHHHHhhccCCCcEEEEE
Confidence 5 334445555666677766
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.038 Score=48.58 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=52.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-E--EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-A--FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.++||.|+ |++|...++.+...|++|++++++.++.+.+.+++ +.. . ..|..+.+.+..+ .+.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 86 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL 86 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4578999986 99999999999999999999999887766554432 321 1 1244444333222 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.+.
T Consensus 87 d~li~~ag~ 95 (252)
T PRK07035 87 DILVNNAAA 95 (252)
T ss_pred CEEEECCCc
Confidence 999998873
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.054 Score=47.74 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=51.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.++++||.|+ +++|.++++.+...|++|+++++++. +.....++.+.+ ...|-.+.+.+.++ .+++|+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~ 86 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI 86 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5789999986 99999999999999999999887643 222222445532 22355555443332 247999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++++.|.
T Consensus 87 lv~~ag~ 93 (251)
T PRK12481 87 LINNAGI 93 (251)
T ss_pred EEECCCc
Confidence 9998874
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.12 Score=47.20 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=71.5
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHHC-CC-eEEEEeCChhhHHHHHHHc---CCcEEecCCCHHHHHHhcCCccE
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF-GL-KVTVISTSPKKESEAISKL---GADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~-~V~~v~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+...+ +..+++.|+|+|..+.+.++..... .. +|.+.++++++.+.+.+.+ +.+... . +..++...+.|+
T Consensus 121 ~~La~-~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~-~---~~~~~av~~ADI 195 (315)
T PRK06823 121 RLLAP-QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNT-T---LDAAEVAHAANL 195 (315)
T ss_pred HHhcC-CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEE-E---CCHHHHhcCCCE
Confidence 34444 5567889999999999888777654 44 8999999999977664433 333221 1 223455678999
Q ss_pred EEECCCChh-hHHHHHhccccCCEEEEecCCCC-CeeeCH
Q 018246 251 IIDTVSAVH-SLAPLLGLLKVNGKLVTVGLPEK-PLEVPI 288 (359)
Q Consensus 251 vid~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~ 288 (359)
|+-++++.. .++ .+.++++-.+..+|.... ...++.
T Consensus 196 V~taT~s~~P~~~--~~~l~~G~hi~~iGs~~p~~~Eld~ 233 (315)
T PRK06823 196 IVTTTPSREPLLQ--AEDIQPGTHITAVGADSPGKQELDA 233 (315)
T ss_pred EEEecCCCCceeC--HHHcCCCcEEEecCCCCcccccCCH
Confidence 998877544 233 246889999999987653 334443
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.022 Score=57.63 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=53.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh---------------------hHHHHHHHcCCcEEecCCCH-H
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK---------------------KESEAISKLGADAFLVSSDP-A 239 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~---------------------~~~~~~~~~g~~~v~~~~~~-~ 239 (359)
..+++|+|+|+|+.|++++..++..|.+|+++++.+. +.+.+ +++|++...+..-. +
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~-~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIF-SAMGIEFELNCEVGKD 403 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHH-HHCCeEEECCCEeCCc
Confidence 3588999999999999999999999999999987543 23344 67776544332110 1
Q ss_pred -HHHHhcCCccEEEECCCCh
Q 018246 240 -KVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 240 -~~~~~~~~~d~vid~~g~~ 258 (359)
.+..+..+||.||.++|..
T Consensus 404 i~~~~~~~~~DavilAtGa~ 423 (654)
T PRK12769 404 ISLESLLEDYDAVFVGVGTY 423 (654)
T ss_pred CCHHHHHhcCCEEEEeCCCC
Confidence 1223334799999988853
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.048 Score=48.76 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=52.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+++++|.|+ |++|++.+..+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+..+ .+++
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 88 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC 88 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4688999986 99999999999999999999999887665553332 322 12344444333322 2479
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|+++.++|
T Consensus 89 d~li~~ag 96 (278)
T PRK08277 89 DILINGAG 96 (278)
T ss_pred CEEEECCC
Confidence 99999987
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=46.46 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=57.0
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc---------EEecCCCHHHHHHhcCCccEEEECC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD---------AFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~---------~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+|.|+|+|..|.+++..+...|.+|.+..++++..+.+.+... .. .+.-. +.+++...+.|+++-++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t---~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKAT---TDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEE---SSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccc---cCHHHHhCcccEEEecc
Confidence 4889999999999999999999999999999988877733222 00 11111 23445557899999999
Q ss_pred CChhhHHHHHhcccc
Q 018246 256 SAVHSLAPLLGLLKV 270 (359)
Q Consensus 256 g~~~~~~~~~~~l~~ 270 (359)
.+.. ++..++.+++
T Consensus 78 Ps~~-~~~~~~~l~~ 91 (157)
T PF01210_consen 78 PSQA-HREVLEQLAP 91 (157)
T ss_dssp -GGG-HHHHHHHHTT
T ss_pred cHHH-HHHHHHHHhh
Confidence 9876 6666666665
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.048 Score=50.20 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=63.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|.+|.|+|.|.+|...++.++..|.+|++.+++++..... .. .. ..+.++....|+|+.++....
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----~~----~~--~~l~ell~~aDiVil~lP~t~~t~ 213 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----LT----YK--DSVKEAIKDADIISLHVPANKESY 213 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----hh----cc--CCHHHHHhcCCEEEEeCCCcHHHH
Confidence 67789999999999999999999999999999886542211 00 11 124455567899998887542
Q ss_pred --hHHHHHhccccCCEEEEecC
Q 018246 260 --SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~~~~~~~l~~~G~~v~~g~ 279 (359)
.-...+..|+++..+|.++-
T Consensus 214 ~li~~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 214 HLFDKAMFDHVKKGAILVNAAR 235 (330)
T ss_pred HHHhHHHHhcCCCCcEEEEcCC
Confidence 22466788899888888854
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.049 Score=49.81 Aligned_cols=89 Identities=30% Similarity=0.403 Sum_probs=65.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCC-Chhh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVS-AVHS 260 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g-~~~~ 260 (359)
-.|+++-|+|.|.||++.++.++..|.+|...++++. .+..+..+++++- +.++....|++.-+.+ ++.+
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~~-------l~ell~~sDii~l~~Plt~~T 214 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYVD-------LDELLAESDIISLHCPLTPET 214 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceecc-------HHHHHHhCCEEEEeCCCChHH
Confidence 3589999999999999999999999999999998875 2221445555431 4455567888865444 4432
Q ss_pred ---H-HHHHhccccCCEEEEecC
Q 018246 261 ---L-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 261 ---~-~~~~~~l~~~G~~v~~g~ 279 (359)
+ ...+..|++++.+|.++-
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaR 237 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTAR 237 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCC
Confidence 2 467889999999999864
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.039 Score=48.56 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+++ +... ..|-.+.+.+..+ .+.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 87 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI 87 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999986 99999999999999999999999987765553333 3221 1344444433332 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 88 d~vi~~ag~ 96 (254)
T PRK08085 88 DVLINNAGI 96 (254)
T ss_pred CEEEECCCc
Confidence 999999974
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.055 Score=48.30 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=54.7
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC---Cc------EEecCCCHHHHHHh-------
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG---AD------AFLVSSDPAKVKAA------- 244 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g---~~------~v~~~~~~~~~~~~------- 244 (359)
-.|+++||.|+ .++|.+++..+...|++|+++++++++.+...+.+. .. .+.|..+.+.+..+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 46788999986 899999999999999999999999998766644322 21 23344433322222
Q ss_pred -cCCccEEEECCCC
Q 018246 245 -MGTMDYIIDTVSA 257 (359)
Q Consensus 245 -~~~~d~vid~~g~ 257 (359)
.++.|+.+++.|.
T Consensus 86 ~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 86 FFGKIDILVNNAGA 99 (270)
T ss_pred hCCCCCEEEEcCCc
Confidence 3579999998874
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.055 Score=47.91 Aligned_cols=98 Identities=20% Similarity=0.315 Sum_probs=63.5
Q ss_pred CCCEEEEECCc---hHHHHHHHHHHHCCCeEEEEeCChhh---HHHHHHHcCCcEE--ecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGLG---GLGHVAVKIGKAFGLKVTVISTSPKK---ESEAISKLGADAF--LVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~g---~vG~~a~~la~~~g~~V~~v~~~~~~---~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|++ ++|.++++.+...|++|++++++++. .+.+.++++.... .|-.+.+.+.++ .+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 57899999863 89999999999999999999887543 3333344443222 344444333322 247
Q ss_pred ccEEEECCCChh-----------------------------hHHHHHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAVH-----------------------------SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+|++++++|... ..+.++..|+.+|+++.++..
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~ 150 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYY 150 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecc
Confidence 899999887310 123355566667898887653
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.1 Score=46.65 Aligned_cols=94 Identities=21% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC---------cEEecCCCHHHHHHhcCCccEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA---------DAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
..++||++|+|. |..+..++++... +|++++.+++-.+.+.+.+.. -.++..+....+.+..+.+|+|+
T Consensus 72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345999998765 4455566666644 899999988776666433321 11222222234444445899997
Q ss_pred ECCC----------ChhhHHHHHhccccCCEEEEe
Q 018246 253 DTVS----------AVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 253 d~~g----------~~~~~~~~~~~l~~~G~~v~~ 277 (359)
-... ....++.+.+.|+++|.++..
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5332 123357888999999999876
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.042 Score=49.03 Aligned_cols=77 Identities=25% Similarity=0.248 Sum_probs=56.5
Q ss_pred CCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEe-------cCCCHH----HHHHhc---
Q 018246 182 EPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFL-------VSSDPA----KVKAAM--- 245 (359)
Q Consensus 182 ~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~-------~~~~~~----~~~~~~--- 245 (359)
++...|+|.| +.++|++.+..++..|+.|.++.|+.+++..+.+.+... .+. |-.+.+ .++++.
T Consensus 31 k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~ 110 (331)
T KOG1210|consen 31 KPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLE 110 (331)
T ss_pred CccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhcc
Confidence 5557888886 599999999999999999999999999999997777732 111 111111 122222
Q ss_pred CCccEEEECCCCh
Q 018246 246 GTMDYIIDTVSAV 258 (359)
Q Consensus 246 ~~~d~vid~~g~~ 258 (359)
+.+|..|.|.|..
T Consensus 111 ~~~d~l~~cAG~~ 123 (331)
T KOG1210|consen 111 GPIDNLFCCAGVA 123 (331)
T ss_pred CCcceEEEecCcc
Confidence 4789999999964
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.13 Score=46.47 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=62.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHH---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEA---ISKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~---~~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.+.++||.|+ |.+|...+..+...|++|++++++.++ .+.. .+..+... ..|..+.+.+.++ .+.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5688999986 999999999888899999999887532 2222 12234321 2344444333322 247
Q ss_pred ccEEEECCCChh--------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAVH--------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|++|.++|... ....+...+++.|+++.++...
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~ 184 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSIT 184 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence 899999887420 1122344556678999887543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.034 Score=51.07 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCCEEEEECC-chHHHHHHHHHH-HCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGK-AFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~-~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
-.+++|+|+|+ |.+|..+++.+. +.|. +++++.+++++...+.++++...+ ..+.+.....|+|+.+++..
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i------~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKI------LSLEEALPEADIVVWVASMP 226 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccH------HhHHHHHccCCEEEECCcCC
Confidence 36789999998 999999888886 4565 899999998888887666542222 12344556899999999875
Q ss_pred hhHHHHHhccccCCEEEEecCCC
Q 018246 259 HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 259 ~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
..+..-...+++.-.+++++.+.
T Consensus 227 ~~~~I~~~~l~~~~~viDiAvPR 249 (340)
T PRK14982 227 KGVEIDPETLKKPCLMIDGGYPK 249 (340)
T ss_pred cCCcCCHHHhCCCeEEEEecCCC
Confidence 42212224557777788887664
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.054 Score=48.40 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=50.8
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSP---KKESEAISKLGAD--AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ +++|++.++.+...|++|+++.+++ ++.+.+.++++.. ...|-.+.+.+.++ .+.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 88 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK 88 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 5688999986 5899999999999999999887763 3444454455532 22344444333332 247
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|++++++|
T Consensus 89 iD~lv~nAG 97 (272)
T PRK08159 89 LDFVVHAIG 97 (272)
T ss_pred CcEEEECCc
Confidence 899999886
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.043 Score=45.14 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=63.2
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--cEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--DAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
+|.|+|+ |-+|...++=|...|..|++++|++++.... +..-+ ..+++ .+.+.....++|+||++.+..
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~i~q~Difd---~~~~a~~l~g~DaVIsA~~~~~~~~ 77 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVTILQKDIFD---LTSLASDLAGHDAVISAFGAGASDN 77 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccceeecccccC---hhhhHhhhcCCceEEEeccCCCCCh
Confidence 4778886 9999999999999999999999999886443 11110 11221 233345556999999998764
Q ss_pred -----hhHHHHHhccccCC--EEEEecCCC
Q 018246 259 -----HSLAPLLGLLKVNG--KLVTVGLPE 281 (359)
Q Consensus 259 -----~~~~~~~~~l~~~G--~~v~~g~~~ 281 (359)
...+.++..|+..| |++.+|...
T Consensus 78 ~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 78 DELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred hHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 12344677777744 788887644
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.12 Score=47.83 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=61.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcC-----------C--cEEecCCCHHHHHHhcCCc
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLG-----------A--DAFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g-----------~--~~v~~~~~~~~~~~~~~~~ 248 (359)
..++|||+|+| .|.++..++++.+. +|++++.+++-.+.+ +++. . -.++..+..+++....+.|
T Consensus 150 ~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelA-r~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMA-RNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHH-HhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34689999865 45677777877655 999999999888777 4321 0 1122222234454444589
Q ss_pred cEEEECCCC-----------hhhHHHHHhccccCCEEEEec
Q 018246 249 DYIIDTVSA-----------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 249 d~vid~~g~-----------~~~~~~~~~~l~~~G~~v~~g 278 (359)
|+||--... ...+..+.+.|+|+|.++.-.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 999754322 124678899999999987764
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.053 Score=47.83 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=62.8
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-c---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-D---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ +++|.++++.+...|++|+++++++ +.+...+++.. . ...|-.+.+.+.++ .+.+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 84 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI 84 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 5788999986 4999999999999999999998874 33333244321 1 12344444333322 2479
Q ss_pred cEEEECCCChh-----------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 249 DYIIDTVSAVH-----------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 249 d~vid~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
|++++++|... ....++..|+.+|+++.++...
T Consensus 85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~ 146 (252)
T PRK06079 85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFG 146 (252)
T ss_pred CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccC
Confidence 99999887310 1123455666779998886543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.063 Score=45.52 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=58.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcEEec-CCCHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADAFLV-SSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~v~~-~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.++.+||-+|+|. |..+..+|+. |.+|++++.+++..+.+.+ ..+...+-. ..+.... ...+.||+|+.+..-
T Consensus 29 ~~~~~vLDiGcG~-G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 29 VKPGKTLDLGCGN-GRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEYDFILSTVVL 105 (197)
T ss_pred CCCCcEEEECCCC-CHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCcCEEEEecch
Confidence 4667899998865 6677777764 8899999999986665522 223221110 0111100 123469999875431
Q ss_pred --------hhhHHHHHhccccCCEEEEe
Q 018246 258 --------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 258 --------~~~~~~~~~~l~~~G~~v~~ 277 (359)
...+..+.+.|+|+|.++.+
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 13467888899999996554
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.073 Score=47.49 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
...||+....+..++...---.|++|+|+|- ..+|.-.+.++...|+.|++..+....
T Consensus 142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~--------------------- 200 (287)
T PRK14176 142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDD--------------------- 200 (287)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCC---------------------
Confidence 3567776666777776654358999999996 569999999999999999887743221
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+.+.+...|+++.++|.+..+. -..++++..++++|..
T Consensus 201 l~~~~~~ADIvv~AvG~p~~i~--~~~vk~gavVIDvGin 238 (287)
T PRK14176 201 LKKYTLDADILVVATGVKHLIK--ADMVKEGAVIFDVGIT 238 (287)
T ss_pred HHHHHhhCCEEEEccCCccccC--HHHcCCCcEEEEeccc
Confidence 2334456899999999887443 4589999999999975
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.061 Score=46.62 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=62.1
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH-HcCCcEE-ecCCCHHHHHHhc-CCccEEEECCCChhhHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS-KLGADAF-LVSSDPAKVKAAM-GTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~-~~~d~vid~~g~~~~~~ 262 (359)
+++|.|+|.+|...++.+...|..|+++++++++.++... ++....+ .+..+.+.+.++. ..+|+++-+++... .+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~-~N 80 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE-VN 80 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH-HH
Confidence 5889999999999999999999999999999999877423 3554333 3455566677764 58999999999865 44
Q ss_pred HHHhcc
Q 018246 263 PLLGLL 268 (359)
Q Consensus 263 ~~~~~l 268 (359)
..+-.+
T Consensus 81 ~i~~~l 86 (225)
T COG0569 81 SVLALL 86 (225)
T ss_pred HHHHHH
Confidence 433333
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.046 Score=47.81 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=51.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc-E--EecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD-A--FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~-------~~~ 248 (359)
.+.++||+|+ |.+|...+..+...|++|++++|++++...+.+ ..+.+ . ..|..+.+.+.++. +.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999986 999999999888889999999999765544322 22322 1 12444444333332 378
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.+.
T Consensus 85 d~vi~~ag~ 93 (251)
T PRK12826 85 DILVANAGI 93 (251)
T ss_pred CEEEECCCC
Confidence 999998864
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.049 Score=46.72 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS 216 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~ 216 (359)
...+|+|+|+|++|..+++.+...|. +++++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 44679999999999999999999999 79998876
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.039 Score=50.66 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=37.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK 226 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~ 226 (359)
.|++++|.|+ |++|.+.+..+...|++|++++|++++++.+.++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~ 96 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS 96 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence 5889999987 9999998888888899999999999887765443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.075 Score=46.84 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=50.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
.+++++|.|+ |++|...++.+...|++|+++.+..+ ..+.+ ++.+.. ...|-.+.+.+.++ .+++|+++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li 84 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKEL-REKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV 84 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH-HhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4678999986 99999999999999999988765543 33334 333432 22355555443332 24789999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
.+.|.
T Consensus 85 ~~ag~ 89 (255)
T PRK06463 85 NNAGI 89 (255)
T ss_pred ECCCc
Confidence 98874
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.092 Score=47.59 Aligned_cols=89 Identities=21% Similarity=0.195 Sum_probs=65.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
-.|++|.|+|-|.+|.+.++.++..|.+|++..+.....+.+ +..|+.. . .+.++....|+|+-++..+.
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-~~~G~~v-~------sl~Eaak~ADVV~llLPd~~t~ 85 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-KADGFEV-M------SVSEAVRTAQVVQMLLPDEQQA 85 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-HHcCCEE-C------CHHHHHhcCCEEEEeCCChHHH
Confidence 368899999999999999999999999999987654444444 5566632 1 24456667899998887543
Q ss_pred -hH-HHHHhccccCCEEEEec
Q 018246 260 -SL-APLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g 278 (359)
.+ ...+..|+++..+++..
T Consensus 86 ~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 86 HVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHhcCCCCCEEEECC
Confidence 23 35677888888776653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.046 Score=47.69 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=53.0
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
..+++++|.|+ |.+|..++..+...|.+|+++++++++.+.+.++ .+.. ...|-.+.+.+..+ .+.
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 34578999986 9999999999999999999999998776555332 2221 22344444433222 246
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++.+.|.
T Consensus 84 id~lv~~ag~ 93 (241)
T PRK07454 84 PDVLINNAGM 93 (241)
T ss_pred CCEEEECCCc
Confidence 9999999874
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.053 Score=47.80 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC---Cc-EEecCCCHHHHHHhc-------CCccEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG---AD-AFLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g---~~-~v~~~~~~~~~~~~~-------~~~d~v 251 (359)
++++||.|+ |.+|...+..+...|++|+++++++++.+.+.+.+. +. ...|..+.+.+..+. +++|++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 81 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL 81 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 467999986 999999999888899999999999888766645443 11 123445544433222 368999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.|.
T Consensus 82 i~~ag~ 87 (257)
T PRK07074 82 VANAGA 87 (257)
T ss_pred EECCCC
Confidence 999874
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.062 Score=49.39 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHcCC---cE-EecCCCHHHHHHhcCCccEEEECC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKLGA---DA-FLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~g~---~~-v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.|.+|||.|+ |.+|...++.+...| .+|++++++..+...+.+.+.. .. ..|..+.+.+.++..++|+||.++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A 82 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence 3678999986 999999888877765 5899998876654444233321 11 235566666666667899999988
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
+.
T Consensus 83 g~ 84 (324)
T TIGR03589 83 AL 84 (324)
T ss_pred cc
Confidence 74
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.11 Score=48.30 Aligned_cols=93 Identities=14% Similarity=0.302 Sum_probs=68.2
Q ss_pred CEEEEECC-chHHHHHHHHHHHC--CCeEEEEe--CChhhHHHHHHHcCCcEEecCCCH--HHHH---------------
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAF--GLKVTVIS--TSPKKESEAISKLGADAFLVSSDP--AKVK--------------- 242 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~--g~~V~~v~--~~~~~~~~~~~~~g~~~v~~~~~~--~~~~--------------- 242 (359)
++|.|+|+ |.+|..++.+.++. ..+|++++ ++.+++...+++|+...++-.++. ..++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~ 81 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE 81 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence 47899995 99999999998876 45777764 677788888899998876544332 1121
Q ss_pred ---Hhc--CCccEEEECCCChhhHHHHHhccccCCEEEEe
Q 018246 243 ---AAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 243 ---~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
++. ..+|+|+.+.++...+...+.+++.|-++.+.
T Consensus 82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA 121 (385)
T PRK05447 82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA 121 (385)
T ss_pred HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence 111 25999999988765588889999888777664
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.055 Score=47.67 Aligned_cols=75 Identities=25% Similarity=0.314 Sum_probs=52.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+++|.|+ |.+|...+..+...|++|+++++++++.+.+.+ +.+.. ...|..+.+.+..+ .+.+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 5789999986 999999999888899999999999876555433 33421 12344554333322 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 90 d~vi~~ag~ 98 (256)
T PRK06124 90 DILVNNVGA 98 (256)
T ss_pred CEEEECCCC
Confidence 999998884
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.046 Score=50.76 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=52.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC----Cc-EEecCCCHHHHHHhcC--CccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG----AD-AFLVSSDPAKVKAAMG--TMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g----~~-~v~~~~~~~~~~~~~~--~~d~vid~ 254 (359)
.|.+|||.|+ |.+|..+++.+...|.+|+++++++.......+.++ .. ...|..+.+.+.++.. ++|+|+.+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 3678999986 999999999999999999999987765433212222 11 2234455555555543 58999998
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
++.
T Consensus 83 A~~ 85 (349)
T TIGR02622 83 AAQ 85 (349)
T ss_pred Ccc
Confidence 873
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.051 Score=42.63 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
.++.+++++|.| .|...+..+...|.+|++++.+++..+.+ ++.+...+.+.-- +.-..+.+++|+++..-......
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a-~~~~~~~v~dDlf-~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA-KKLGLNAFVDDLF-NPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH-HHhCCeEEECcCC-CCCHHHHhcCCEEEEeCCCHHHH
Confidence 456789999999 88755656667899999999999998888 6677654442110 00112335788888877776633
Q ss_pred HHHHhcc
Q 018246 262 APLLGLL 268 (359)
Q Consensus 262 ~~~~~~l 268 (359)
..+++.-
T Consensus 92 ~~~~~la 98 (134)
T PRK04148 92 PFILELA 98 (134)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.063 Score=46.75 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS 225 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~ 225 (359)
++++++|+|+ |++|...++.+...|++|+++++++++.+.+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD 48 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence 4678999986 999999999999899999999999987665533
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.058 Score=50.09 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=56.8
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHH----HHHHHcC------CcEE-ecCCC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKES----EAISKLG------ADAF-LVSSD 237 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~----~~~~~~g------~~~v-~~~~~ 237 (359)
|||.-++.... -++.+|||.|+ |-+|..++..+...|.+|+++++...... .+....+ ...+ .|..+
T Consensus 2 ~~~~~~~~~~~-~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 2 TAYEELRTKLV-LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred chhhhhhhccc-ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 56665554444 35578999986 99999999999999999999987543221 1111111 1112 24455
Q ss_pred HHHHHHhcCCccEEEECCC
Q 018246 238 PAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 238 ~~~~~~~~~~~d~vid~~g 256 (359)
.+.+..+..++|+||.+++
T Consensus 81 ~~~l~~~~~~~d~ViHlAa 99 (348)
T PRK15181 81 FTDCQKACKNVDYVLHQAA 99 (348)
T ss_pred HHHHHHHhhCCCEEEECcc
Confidence 5556666668999999876
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.048 Score=48.14 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHC-CCeEEEEeCChhh-HHHHHHH---cCC-c-EE--ecCCCHHH----HHHhc--
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAF-GLKVTVISTSPKK-ESEAISK---LGA-D-AF--LVSSDPAK----VKAAM-- 245 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~~~~~-~~~~~~~---~g~-~-~v--~~~~~~~~----~~~~~-- 245 (359)
..+.+|||.|+ |++|...++-+.+. |++|++++|++++ ++.+.++ .+. + ++ .|..+.+. ++++.
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 46778999986 99999999877666 4899999998875 4444333 232 1 22 34444332 22222
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
++.|+++.+.|.
T Consensus 86 g~id~li~~ag~ 97 (253)
T PRK07904 86 GDVDVAIVAFGL 97 (253)
T ss_pred CCCCEEEEeeec
Confidence 479999887764
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.08 Score=45.83 Aligned_cols=92 Identities=24% Similarity=0.275 Sum_probs=60.9
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHH---HcCCc-EEecCCCHHHHHHh-cCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAIS---KLGAD-AFLVSSDPAKVKAA-MGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~-~~~~d~vid~ 254 (359)
++++++||-.|+|. |..+..+++. ++ +|++++.+++..+.+.+ ..+.. .+++.+ ....+ ...+|+|+..
T Consensus 34 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d---~~~~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD---WARAVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc---hhhhccCCCeeEEEEC
Confidence 37889999999987 8888888875 66 99999999987765532 23332 222222 11112 2479999975
Q ss_pred CCCh---------------------------hhHHHHHhccccCCEEEEe
Q 018246 255 VSAV---------------------------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~~---------------------------~~~~~~~~~l~~~G~~v~~ 277 (359)
.+.. ..+..+.+.|+++|+++.+
T Consensus 109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3211 1245678899999998865
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.06 Score=45.74 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS 216 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~ 216 (359)
...+|+|+|+|++|..+++.+...|. +++++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34679999999999999999999999 79999977
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.056 Score=47.32 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=50.9
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc-E--EecCCCHHHHHHh-------cCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD-A--FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~~-------~~~ 247 (359)
++++||.|+ |++|...++.+...|++|+++++++++.+.+...+ +.. + ..|..+.+.+.++ .++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467999986 99999988888888999999999988766553322 211 1 2355554333222 247
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
.|+++.+.|
T Consensus 82 id~vi~~ag 90 (248)
T PRK08251 82 LDRVIVNAG 90 (248)
T ss_pred CCEEEECCC
Confidence 999999887
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.063 Score=47.64 Aligned_cols=75 Identities=9% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSP---KKESEAISKLGAD--AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ +++|++.++.+...|++|+++.+.+ ++.+.+.++.+.. ...|-.+.+.+.++ .++
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 84 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG 84 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4678999983 5899999999999999999886653 2333332333422 22355554433332 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 85 iD~lVnnAG~ 94 (261)
T PRK08690 85 LDGLVHSIGF 94 (261)
T ss_pred CcEEEECCcc
Confidence 9999999864
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.087 Score=47.32 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=59.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh---HH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS---LA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~---~~ 262 (359)
+|.|+|.|.+|...+..++..|.+|+++++++++.+.+ .+.|..... ..+. +.....|+||.|+..... +.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a-~~~g~~~~~-~~~~----~~~~~aDlVilavp~~~~~~~~~ 75 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERA-IERGLVDEA-STDL----SLLKDCDLVILALPIGLLLPPSE 75 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCcccc-cCCH----hHhcCCCEEEEcCCHHHHHHHHH
Confidence 58899999999998888888899999999999888877 555632111 1111 123578999999986552 23
Q ss_pred HHHhccccCCEEEEecC
Q 018246 263 PLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~ 279 (359)
.....++++..+.+++.
T Consensus 76 ~l~~~l~~~~ii~d~~S 92 (279)
T PRK07417 76 QLIPALPPEAIVTDVGS 92 (279)
T ss_pred HHHHhCCCCcEEEeCcc
Confidence 33344555555555554
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.046 Score=48.60 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=50.4
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
+++++|.|+ |.+|...++.+...|++|+++++++++.+.. .+.. ...|..+.+.+.++ .+.+|++|.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ 80 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI---PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNN 80 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc---CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 467999986 9999999999888999999999987654322 1222 23455555444333 2478999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
.|.
T Consensus 81 ag~ 83 (270)
T PRK06179 81 AGV 83 (270)
T ss_pred CCC
Confidence 985
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.2 Score=43.61 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHHH---HHcCCc-E--EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAI---SKLGAD-A--FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~---~~~g~~-~--v~~~~~~~~~~~~-------~~~ 247 (359)
++.++||.|+ |++|...++.+...|++|+++.++.+. .+... ++.+.. . ..|..+.+.+.+. .++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR 83 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5678999986 999999999999999998887765432 22221 233422 1 2244444333332 247
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+|+++.+.|.. ..+..+++.++..|+++.++..
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 84 IDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence 99999988741 0123344556677899988653
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.12 Score=46.25 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=63.5
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCc---------EEecCCCHHHHHHhcCCccEEE-E
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGAD---------AFLVSSDPAKVKAAMGTMDYII-D 253 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~---------~v~~~~~~~~~~~~~~~~d~vi-d 253 (359)
++|||+|.|. |-.+-.++++... +++++.-+++=.+.+.+-++.. .++-.+...+++.....+|++| |
T Consensus 78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 5899987543 4456677787766 9999999888777775555522 1222222345555556899997 5
Q ss_pred CCCC---------hhhHHHHHhccccCCEEEEe
Q 018246 254 TVSA---------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~---------~~~~~~~~~~l~~~G~~v~~ 277 (359)
+... ...++.+.++|+++|.++.-
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4433 34578999999999999876
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.076 Score=47.11 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=53.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+++|.|+ +++|..++..+...|++|+++++++++.+.+.+. .+.+ ...|-.+.+.+.++ .+.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI 88 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 5678999986 9999999888888999999999998776555333 3432 22355554433332 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 89 d~li~~ag~ 97 (265)
T PRK07097 89 DILVNNAGI 97 (265)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.69 Score=41.76 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=87.2
Q ss_pred CEEEEECCchHHHHHH-HHHHHCCCeEEEEe-CChh--hHHHHHHHcCCcEEecCCCHHHHHHh--cCCccEEEECCCCh
Q 018246 185 KHLGVAGLGGLGHVAV-KIGKAFGLKVTVIS-TSPK--KESEAISKLGADAFLVSSDPAKVKAA--MGTMDYIIDTVSAV 258 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~-~la~~~g~~V~~v~-~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~--~~~~d~vid~~g~~ 258 (359)
-+|.|+|.|.+|...+ .+.+.-+.++.++. .+++ .++.+ +++|..... .+.+.+.+. ..++|+||++++..
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-~~~Gi~~~~--~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-RRLGVATSA--EGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-HHcCCCccc--CCHHHHHhCcCCCCCCEEEECCCHH
Confidence 3689999999998744 44444466766654 4443 23444 678854432 222333222 14799999999987
Q ss_pred hhHHHHHhccccCCEEEEecCCC-CCe---eeCHHHHHh-cCcEEEEeecCCHHHHHHHHHHHHhCCCcccE--------
Q 018246 259 HSLAPLLGLLKVNGKLVTVGLPE-KPL---EVPIFALVG-ARRLVGGSNVGGMKETQEMLDFCAKHNIAADI-------- 325 (359)
Q Consensus 259 ~~~~~~~~~l~~~G~~v~~g~~~-~~~---~~~~~~~~~-k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~-------- 325 (359)
.-.+.+..+++.|-.+++..... .++ ..+...... ++..+.....-..-.+-..+.-+.++.+...+
T Consensus 82 ~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~Al~~v~~~~~~eIvat~~s~s~ 161 (302)
T PRK08300 82 AHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVSRVAPVHYAEIVASIASKSA 161 (302)
T ss_pred HHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHHHhcccCcCceeeeeeeehhhcc
Confidence 64556666666665555543222 111 234333322 34455544432222222233334444442222
Q ss_pred ---EEEccccHHHHHHHHH---cCCccEEEEEEcCCC
Q 018246 326 ---ELVRMDQINTAMERLA---KSDVKYRFVIDVGNS 356 (359)
Q Consensus 326 ---~~~~l~~~~~a~~~~~---~~~~~gkvvv~~~~~ 356 (359)
.+-.+||+.+--+... .+-..||+++.+++.
T Consensus 162 g~gtr~nidE~~~~t~~~~~~~~g~~~~kai~~~npa 198 (302)
T PRK08300 162 GPGTRANIDEFTETTSRAIEKVGGAARGKAIIILNPA 198 (302)
T ss_pred CCcccccHHHHHHHHHHHHHHhcCcccceEEEEecCC
Confidence 1223455433333222 233459999998874
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.038 Score=45.07 Aligned_cols=73 Identities=27% Similarity=0.427 Sum_probs=48.2
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCC--hhhHHHHHHH---cCCc-EE--ecCCCHHHHHHh-------cCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTS--PKKESEAISK---LGAD-AF--LVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~--~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~-------~~~ 247 (359)
+++||.|+ +++|+..++.+...|+ +|+++.++ .++.+.+..+ .+.. .+ .|..+.+.++++ .+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 36899986 9999999888888877 88888888 4554444333 3432 11 234444333332 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|.+.|.
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 9999998885
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.076 Score=46.85 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLK-VTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.+++++|.|+ |++|..+++.+...|++ |+++++++++.+.... ..+.. ...|..+.+.+.++ .++
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 84 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR 84 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5678999986 99999999999999997 9999998766553322 33432 22355555433332 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++.+.+.
T Consensus 85 id~li~~ag~ 94 (260)
T PRK06198 85 LDALVNAAGL 94 (260)
T ss_pred CCEEEECCCc
Confidence 9999999874
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.1 Score=46.46 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=73.0
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHH
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 241 (359)
.+||+..+.+..++...---.|++|+|+|- ..+|.=.+.++...|+.|++..+.... +
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~---------------------l 195 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKN---------------------L 195 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC---------------------H
Confidence 467776666767766654458999999995 899999999999999999887643222 2
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+.+...|+++-++|.+..+. -..+++|..++++|...
T Consensus 196 ~~~~~~ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 196 KEVCKKADILVVAIGRPKFID--EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred HHHHhhCCEEEEcCCCcCccC--HHHcCCCcEEEEeeccc
Confidence 334456899999999988444 45699999999998754
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.079 Score=51.58 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=50.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh-h----HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK-K----ESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~-~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
..+++|+|+|+|.+|+.++.+++..|.+|+++++.+. . .+.+ ++.|.....+.... ...++|+|+.+.|
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l-~~~gv~~~~~~~~~-----~~~~~D~Vv~s~G 87 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAIL-EALGATVRLGPGPT-----LPEDTDLVVTSPG 87 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHH-HHcCCEEEECCCcc-----ccCCCCEEEECCC
Confidence 3567899999999999999999999999999986653 1 1233 56676654433221 2236888988887
Q ss_pred Ch
Q 018246 257 AV 258 (359)
Q Consensus 257 ~~ 258 (359)
..
T Consensus 88 i~ 89 (480)
T PRK01438 88 WR 89 (480)
T ss_pred cC
Confidence 53
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.07 Score=46.39 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=54.7
Q ss_pred EEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh--HHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCC
Q 018246 187 LGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK--ESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 187 VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~--~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
|+|.|+ |.+|...++.+...+.+|.++.|+... ...+ +..|+..+ .|+.+.+.+.+...++|.||.+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l-~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQL-QALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHH-HHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhh-hcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 688987 999999999999988899999998743 3444 67787544 3556667788888899999998883
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.068 Score=46.89 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=51.4
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHH-------HHhcCCcc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKV-------KAAMGTMD 249 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~-------~~~~~~~d 249 (359)
+.++||.|+ |.+|...+..+.+.|++|+++++++++.+.+...+ +.. ...|..+.+.+ .+..++.|
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 357999986 99999999998889999999999987766553322 222 12355554422 22234789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|.+.+.
T Consensus 81 ~vi~~a~~ 88 (255)
T TIGR01963 81 ILVNNAGI 88 (255)
T ss_pred EEEECCCC
Confidence 99988864
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.074 Score=49.97 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=51.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC-------------------hhhHHHHHH---HcCC-cEEecCC--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS-------------------PKKESEAIS---KLGA-DAFLVSS-- 236 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~-------------------~~~~~~~~~---~~g~-~~v~~~~-- 236 (359)
.+.+|+|+|+|++|..++..+...|. ++++++.. ..+.+.+.+ ++.. ..+....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 45689999999999999999999999 89999876 223333322 2222 2221111
Q ss_pred -CHHHHHHhcCCccEEEECCCChh
Q 018246 237 -DPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 237 -~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
+.+.+..+..++|+|++|+.+..
T Consensus 214 ~~~~~~~~~~~~~D~Vv~~~d~~~ 237 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVDGADNFP 237 (376)
T ss_pred CChHHHHHHHhCCCEEEECCCCHH
Confidence 12334455568999999999865
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.087 Score=46.49 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=50.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|...++.+...|++|++++++ ++.+.+ ..+.+.+ ...|..+.+.+..+ .+.+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i 92 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI 92 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 999999999999999999999887 333222 2333432 22344554433332 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 93 d~li~~ag~ 101 (258)
T PRK06935 93 DILVNNAGT 101 (258)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.064 Score=46.94 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=50.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.++++||.|+ |++|...+..+...|++|+++++++. +.....++.+.. ...|..+.+.+..+ .+++|+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 83 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDI 83 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4788999986 99999999999999999999998753 222222444432 22344554433322 247999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.+.|.
T Consensus 84 li~~ag~ 90 (248)
T TIGR01832 84 LVNNAGI 90 (248)
T ss_pred EEECCCC
Confidence 9998874
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.088 Score=47.42 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=50.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh---------hhHHHHHHH---cCCcE---EecCCCHHHHHHh--
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP---------KKESEAISK---LGADA---FLVSSDPAKVKAA-- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~---------~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-- 244 (359)
.++++||.|+ +++|.+.++.+...|++|++++++. ++.+.+.++ .+... ..|-.+.+.+.++
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 5789999986 9999999999988999999988764 444443333 23321 2344544333222
Q ss_pred -----cCCccEEEECCCC
Q 018246 245 -----MGTMDYIIDTVSA 257 (359)
Q Consensus 245 -----~~~~d~vid~~g~ 257 (359)
.+.+|+++++.|.
T Consensus 85 ~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 85 AAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 2478999998874
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.069 Score=51.87 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=50.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
-.+++|+|+|.|..|++++.+++..|+.|++.++.......+.+++|.......+..+.+ ..+|+|+-+.|-
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~----~~~d~vV~Spgi 84 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQL----DSFSLVVTSPGW 84 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHh----cCCCEEEeCCCC
Confidence 356689999999999999999999999999999876554433356676554332222222 357888876654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.013 Score=56.58 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCCCCCEEE----EEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEE
Q 018246 179 GMTEPGKHLG----VAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 179 ~~~~~g~~Vl----I~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+.++|+.+| |+| +|++|.++++++++.|++|+.+.+.+.+.... +..+.+ .+++.+.......+..-
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~----- 102 (450)
T PRK08261 29 RRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAG-WGDRFGALVFDATGITDPADLKAL----- 102 (450)
T ss_pred cCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccC-cCCcccEEEEECCCCCCHHHHHHH-----
Confidence 3446777777 665 59999999999999999999987665533222 223333 34444332111111100
Q ss_pred ECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
-..+...++.|.++|+++.++...
T Consensus 103 -----~~~~~~~l~~l~~~griv~i~s~~ 126 (450)
T PRK08261 103 -----YEFFHPVLRSLAPCGRVVVLGRPP 126 (450)
T ss_pred -----HHHHHHHHHhccCCCEEEEEcccc
Confidence 023567788899999999998654
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.072 Score=47.36 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=48.8
Q ss_pred CCCEEEEECCc---hHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGLG---GLGHVAVKIGKAFGLKVTVISTSP---KKESEAISKLGAD--AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~g---~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|++ ++|.++++.+...|++|+++++++ +..+.+..+.+.. ...|-.+.+.+..+ .+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 84 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK 84 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence 46889999873 899999999988999999888763 2233332223321 22355555433332 246
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|++++++|
T Consensus 85 iD~linnAg 93 (262)
T PRK07984 85 FDGFVHSIG 93 (262)
T ss_pred CCEEEECCc
Confidence 899999997
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.056 Score=49.07 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=58.2
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE----E-ecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA----F-LVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~----v-~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
+|+|+|+|.+|.+.+..+...|.+|+++++++++.+.+ ++.|... . ......+..... ..+|+++-++....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~- 78 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDAL-NENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ- 78 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHH-HHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence 58999999999998888888899999999988887776 4445321 0 000000111222 57999999988655
Q ss_pred HHHHHhccc----cCCEEEEe
Q 018246 261 LAPLLGLLK----VNGKLVTV 277 (359)
Q Consensus 261 ~~~~~~~l~----~~G~~v~~ 277 (359)
+...++.++ ++..++.+
T Consensus 79 ~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 79 LPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred HHHHHHHHhhhcCCCCEEEEe
Confidence 444444443 44566655
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.05 Score=49.92 Aligned_cols=76 Identities=21% Similarity=0.208 Sum_probs=52.7
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC---cEE--ecCCCHHHHHHhcCCccEEE
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA---DAF--LVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~---~~v--~~~~~~~~~~~~~~~~d~vi 252 (359)
..+++|||.|+ |.+|..++..+...|.+|++++++.++....... .+. -.+ .|..+.+.+.++..++|+|+
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 35789999986 9999999999999999999888776644332111 111 112 24455555666666899999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
.+++.
T Consensus 83 h~A~~ 87 (325)
T PLN02989 83 HTASP 87 (325)
T ss_pred EeCCC
Confidence 98873
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.1 Score=46.10 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHH-hcCCccEEEEC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKA-AMGTMDYIIDT 254 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~-~~~~~d~vid~ 254 (359)
.++.+||-+|+|. |..+..+++. |.+|++++.+++..+.+.+. .|.. .++.. +...+.. ..+.+|+|+..
T Consensus 43 ~~~~~vLDiGcG~-G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGE-GQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-AAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-CHHHHhhhcCCCCCEEEeh
Confidence 4567888888754 5667777764 88999999999887777333 2321 22221 2222222 23479999854
Q ss_pred CC-----C-hhhHHHHHhccccCCEEEEe
Q 018246 255 VS-----A-VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g-----~-~~~~~~~~~~l~~~G~~v~~ 277 (359)
.. . ...+..+.+.|+|+|.++.+
T Consensus 120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 32 2 23578899999999999865
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.088 Score=45.83 Aligned_cols=93 Identities=20% Similarity=0.293 Sum_probs=55.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHH-----------------------HHHcCCcEEec-CC-
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEA-----------------------ISKLGADAFLV-SS- 236 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~-----------------------~~~~g~~~v~~-~~- 236 (359)
.+.+|+|+|+|++|..++..+...|. +++++|...-+...+ +++++.+-.++ +.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~ 105 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG 105 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 34679999999999999999999999 888887443222111 12233211111 11
Q ss_pred --CHHHHHHhcCCccEEEECCCChhhHHHHHh--ccccCCEEEE
Q 018246 237 --DPAKVKAAMGTMDYIIDTVSAVHSLAPLLG--LLKVNGKLVT 276 (359)
Q Consensus 237 --~~~~~~~~~~~~d~vid~~g~~~~~~~~~~--~l~~~G~~v~ 276 (359)
..+.+.++..++|+|+||+.+.. ....+. +.+.+=.++.
T Consensus 106 ~~~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 106 RLSEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred cCCHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEE
Confidence 12233444568999999999865 333333 3333434443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.16 Score=43.97 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHH---c-CCcEEe-cCCCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISK---L-GADAFL-VSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~---~-g~~~v~-~~~~~~~~~~~~~~~d~vid 253 (359)
.+++|++||=+|+|. |..+..+++..+ .+|++++.+++.++.+.+. . +...+. |..++.....+...+|+++.
T Consensus 69 ~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 69 PIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence 458999999988753 334555666654 4899999999866644222 1 222221 11111111122346999995
Q ss_pred CCCCh----hhHHHHHhccccCCEEEEe
Q 018246 254 TVSAV----HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~~----~~~~~~~~~l~~~G~~v~~ 277 (359)
....+ ..+..+.+.|+|+|+++..
T Consensus 148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 44432 1367888899999999884
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.075 Score=48.86 Aligned_cols=99 Identities=14% Similarity=0.234 Sum_probs=66.5
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHHC-CC-eEEEEeCChhhHHHHHHH---cCCcEEecCCCHHHHHHhcCCccE
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF-GL-KVTVISTSPKKESEAISK---LGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~-~V~~v~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+...+ +...++.|+|+|..|.+.+...... .. +|.+.++++++.+.+.++ +|..... .. ...++..+.|+
T Consensus 121 ~~La~-~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~-~~---~~~eav~~aDi 195 (325)
T TIGR02371 121 KYLAR-KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRA-AT---DPREAVEGCDI 195 (325)
T ss_pred HHhCC-CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE-eC---CHHHHhccCCE
Confidence 44444 4567899999999999866655443 44 899999999998766554 3432111 12 23344568999
Q ss_pred EEECCCChh-hHHHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAVH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
|+-|+.+.. .+. ...+++|-.+..+|...
T Consensus 196 VitaT~s~~P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 196 LVTTTPSRKPVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred EEEecCCCCcEec--HHHcCCCCEEEecCCCC
Confidence 998886543 232 34679999999998754
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.12 Score=45.24 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=49.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHH----------------------HHHcCCc-EEecCC---
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEA----------------------ISKLGAD-AFLVSS--- 236 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~----------------------~~~~g~~-~v~~~~--- 236 (359)
+.+|+|+|+|++|..+++.+...|. +++++|...-+...+ +++++.. .+....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i 103 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL 103 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 4689999999999999999999999 888888543221111 1233321 111111
Q ss_pred CHHHHHHhcCCccEEEECCCChh
Q 018246 237 DPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 237 ~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
+.+.+.++..++|+|+||..+..
T Consensus 104 ~~~~~~~~~~~~DlVvd~~D~~~ 126 (240)
T TIGR02355 104 DDAELAALIAEHDIVVDCTDNVE 126 (240)
T ss_pred CHHHHHHHhhcCCEEEEcCCCHH
Confidence 12334455568999999999876
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.087 Score=46.59 Aligned_cols=75 Identities=12% Similarity=0.244 Sum_probs=51.0
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCCh--hhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSP--KKESEAISKLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~--~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.+++++|.|+ +++|.++++.+...|++|++++++. +..+.+.++++.. ...|-.+.+.+.++ .+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~ 85 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG 85 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999985 7999999998888999999998654 3344554445421 22354554433332 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 86 iD~li~nAG~ 95 (256)
T PRK07889 86 LDGVVHSIGF 95 (256)
T ss_pred CcEEEEcccc
Confidence 9999998874
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.062 Score=46.89 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=50.6
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhc-------CCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAISKL---GAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
++++||.|+ |.+|...+..+...|++|+++ ++++++.+.+.+.+ +.. ...|..+.+.+.++. +++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI 84 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 468999986 999999998888889999998 88877665443332 221 123445544433322 379
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.+.|.
T Consensus 85 d~vi~~ag~ 93 (247)
T PRK05565 85 DILVNNAGI 93 (247)
T ss_pred CEEEECCCc
Confidence 999998874
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.07 Score=46.43 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=52.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE-E--ecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA-F--LVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~-------~~~~ 248 (359)
++.++||.|+ |.+|...++.+.+.|.+|+++++++++.+.... ..+.+. + .|..+.+.+.+. .+.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL 83 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4578999987 999999999998899999999999877554422 234322 1 344544333222 2468
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|.++.++|.
T Consensus 84 d~vi~~ag~ 92 (246)
T PRK05653 84 DILVNNAGI 92 (246)
T ss_pred CEEEECCCc
Confidence 999998865
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.11 Score=54.54 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=71.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHC-CCe-------------EEEEeCChhhHHHHHHHc-CCc-EEecCCCHHHHHHhcC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLK-------------VTVISTSPKKESEAISKL-GAD-AFLVSSDPAKVKAAMG 246 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~-g~~-------------V~~v~~~~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~~~ 246 (359)
..++|+|+|+|.+|..++..+... +++ |++.+.+.++.+.+.+.+ +++ ..+|..+.+.+..+..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467899999999999988888654 334 888888888887776666 433 3455666666666656
Q ss_pred CccEEEECCCChhhHHHHHhccccCCEEEEec
Q 018246 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
++|+|+.|++...-...+..|++.+-.+++..
T Consensus 648 ~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 79999999997654667777888887777654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=47.02 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=59.4
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH-
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL- 264 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~- 264 (359)
+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+ ..++....|+||.|+.........
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~-~~~g~~~~---~~---~~e~~~~~d~vi~~vp~~~~~~~v~ 76 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEV-IAAGAETA---ST---AKAVAEQCDVIITMLPNSPHVKEVA 76 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCeec---CC---HHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 68899999999988888888899999999999887776 55564321 11 223334689999888754433332
Q ss_pred ------HhccccCCEEEEecC
Q 018246 265 ------LGLLKVNGKLVTVGL 279 (359)
Q Consensus 265 ------~~~l~~~G~~v~~g~ 279 (359)
...++++-.+++++.
T Consensus 77 ~~~~~~~~~~~~g~iiid~st 97 (296)
T PRK11559 77 LGENGIIEGAKPGTVVIDMSS 97 (296)
T ss_pred cCcchHhhcCCCCcEEEECCC
Confidence 344555566666644
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.048 Score=47.42 Aligned_cols=71 Identities=30% Similarity=0.406 Sum_probs=51.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCc--E-EecCCCHHHHHHhc---CCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGAD--A-FLVSSDPAKVKAAM---GTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~--~-v~~~~~~~~~~~~~---~~~d~vid~ 254 (359)
.+.+++|.|+ |.+|..+++.+...|+ +|+++++++++.+. .+.. . ..|..+.+.+.++. +.+|++|.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 80 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN 80 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence 4678999986 9999999999999999 99999998776542 3321 1 23455555544443 368999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
.|.
T Consensus 81 ag~ 83 (238)
T PRK08264 81 AGI 83 (238)
T ss_pred CCc
Confidence 886
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.08 Score=45.63 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe---------cCCC-----HHHH---HHh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL---------VSSD-----PAKV---KAA 244 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~---------~~~~-----~~~~---~~~ 244 (359)
.++.+||+.|+|- |.-++-||. .|.+|++++.++...+.+.++.+..... .... .+.. ...
T Consensus 36 ~~~~rvL~~gCG~-G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGK-SLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCC-hHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 4677999998763 566666664 6999999999999888765555432110 0000 0000 001
Q ss_pred cCCccEEEECCCC--------hhhHHHHHhccccCCEEEEe
Q 018246 245 MGTMDYIIDTVSA--------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 245 ~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 277 (359)
.+.+|.|+|..-- ...+..+.+.|+|+|+++++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1368999986531 12367888999999875543
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.083 Score=48.33 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=52.6
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCC---c-E--EecCCCHHHHHHh-------cCCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGA---D-A--FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~---~-~--v~~~~~~~~~~~~-------~~~~ 248 (359)
+++++|.|+ +++|.++++.+...| ++|+++++++++.+.+.+++.. . . ..|-.+.+.+..+ .+++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 82 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL 82 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 568999986 899999998888889 8999999998887766555531 1 1 1355554333222 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.++|.
T Consensus 83 D~lI~nAG~ 91 (314)
T TIGR01289 83 DALVCNAAV 91 (314)
T ss_pred CEEEECCCc
Confidence 999998873
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.12 Score=51.37 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=66.3
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChhh--
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVHS-- 260 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~-- 260 (359)
++++|.|.|.+|+..++.++..|.+|++++.++++.+.+ ++.|...+. |..+++.+++.. +.+|.++-++++...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 679999999999999999999999999999999999888 677866555 334445454443 488988877765431
Q ss_pred -HHHHHhccccCCEEEEe
Q 018246 261 -LAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 261 -~~~~~~~l~~~G~~v~~ 277 (359)
+-.+.+...+.-+++.-
T Consensus 497 ~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 497 EIVASAREKRPDIEIIAR 514 (558)
T ss_pred HHHHHHHHHCCCCeEEEE
Confidence 22334445555555543
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.073 Score=47.19 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=50.1
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCC---hhhHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTS---PKKESEAISKLGAD--AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~---~~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ +++|+++++.+...|++|+++.+. +++.+.+.++++.. ...|-.+.+.+..+ .+.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG 84 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence 4688999983 699999999988899999987543 44555554455532 22344554333322 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++++.|.
T Consensus 85 iD~lvnnAG~ 94 (260)
T PRK06997 85 LDGLVHSIGF 94 (260)
T ss_pred CcEEEEcccc
Confidence 9999998863
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.072 Score=47.00 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=50.8
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCc--E--EecCCCHHHHHHh-------cCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGAD--A--FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~--~--v~~~~~~~~~~~~-------~~~ 247 (359)
++++||.|+ |.+|...+..+...|++|++++++.++.+.+.++ .+.. + ..|..+.+.+..+ .++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999986 9999999999988999999999987766554332 2211 1 2244444333322 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++.+.|.
T Consensus 82 id~vv~~ag~ 91 (259)
T PRK12384 82 VDLLVYNAGI 91 (259)
T ss_pred CCEEEECCCc
Confidence 8999998873
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.096 Score=46.74 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=72.3
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHH
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 241 (359)
.+||+..+....++..+---.|++|.|+|. +.+|.-.+.++...|++|++..+... .+
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~---------------------~l 195 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR---------------------NL 195 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC---------------------CH
Confidence 467776666666766654458999999996 99999999999999999988732211 12
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+.....|+|+-++|.+..+...+ +++|..++++|...
T Consensus 196 ~~~~~~ADIVI~avg~~~~v~~~~--ik~GavVIDvgin~ 233 (284)
T PRK14179 196 AEVARKADILVVAIGRGHFVTKEF--VKEGAVVIDVGMNR 233 (284)
T ss_pred HHHHhhCCEEEEecCccccCCHHH--ccCCcEEEEeccee
Confidence 334456899999999988666544 99999999998654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.066 Score=49.45 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=51.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh---------------------hHHH---HHHHcCCc-EE--ec
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK---------------------KESE---AISKLGAD-AF--LV 234 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~---------------------~~~~---~~~~~g~~-~v--~~ 234 (359)
...+|+|+|+|++|..++..+...|. ++++++...- +.+. .+++++.. .+ +.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 34679999999999999999999999 9999997531 1111 11334322 11 11
Q ss_pred -CCCHHHHHHhcCCccEEEECCCChh
Q 018246 235 -SSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 235 -~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
.-..+.+..+..++|+|++|..+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~~Dn~~ 128 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIIDATDNFE 128 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEEcCCCHH
Confidence 1113345556678999999999865
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.066 Score=52.60 Aligned_cols=95 Identities=20% Similarity=0.155 Sum_probs=62.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS-- 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~-- 260 (359)
.+++++|+|+|++|.+++..+...|++|+++.++.++.+.+.+.++... +...+. ........|+++++++-...
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~-~~~~~~--~~~~~~~~diiINtT~vGm~~~ 454 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQA-LTLADL--ENFHPEEGMILANTTSVGMQPN 454 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCce-eeHhHh--hhhccccCeEEEecccCCCCCC
Confidence 4678999999999999999999999999999999988888866765432 222111 11112357889987753320
Q ss_pred ---HHHHHhccccCCEEEEecCC
Q 018246 261 ---LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 261 ---~~~~~~~l~~~G~~v~~g~~ 280 (359)
..-....+++.+.++++-..
T Consensus 455 ~~~~pl~~~~l~~~~~v~D~vY~ 477 (529)
T PLN02520 455 VDETPISKHALKHYSLVFDAVYT 477 (529)
T ss_pred CCCCcccHhhCCCCCEEEEeccC
Confidence 01122446666666666443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.09 Score=47.54 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=58.6
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH--
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL-- 264 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~-- 264 (359)
|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+ ..+.....|+||.|+.....+...
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---~~~~~~~aDivi~~vp~~~~~~~v~~ 74 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-LAAGAVTA---ET---ARQVTEQADVIFTMVPDSPQVEEVAF 74 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCccc---CC---HHHHHhcCCEEEEecCCHHHHHHHHc
Confidence 7788999999998888888899999999999988877 55564321 11 223345689999888865423322
Q ss_pred -----HhccccCCEEEEec
Q 018246 265 -----LGLLKVNGKLVTVG 278 (359)
Q Consensus 265 -----~~~l~~~G~~v~~g 278 (359)
...++++-.++.++
T Consensus 75 ~~~~~~~~~~~g~iivd~s 93 (291)
T TIGR01505 75 GENGIIEGAKPGKTLVDMS 93 (291)
T ss_pred CcchHhhcCCCCCEEEECC
Confidence 23445555566554
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=47.21 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHC-CC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEE
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF-GL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+...+ +...++.|+|+|..+.+-++.++.. +. +|.+.+++++..+.+.+.+....-.+....+..++...+.|+|+
T Consensus 122 a~~LA~-~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIv 200 (330)
T COG2423 122 AKYLAR-KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVV 200 (330)
T ss_pred HHHhcc-CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEE
Confidence 344454 5667889999999999988888755 55 89999999998777654433221111111123355567899999
Q ss_pred ECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
-|+.+...+ -.-+.|+++-++..+|...
T Consensus 201 t~T~s~~Pi-l~~~~l~~G~hI~aiGad~ 228 (330)
T COG2423 201 TATPSTEPV-LKAEWLKPGTHINAIGADA 228 (330)
T ss_pred EecCCCCCe-ecHhhcCCCcEEEecCCCC
Confidence 988765411 2345788999999998644
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.094 Score=48.77 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--C--CcE-EecCCCHHHHHHhcCCccEEEECC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--G--ADA-FLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--g--~~~-v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
..+.+|||.|+ |.+|..+++.+...|.+|++++++.+....+...+ + ... ..|..+.+.+.++..++|+||.++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 35678999986 99999999999999999999988876655443332 1 111 124445555666666899999988
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
+.
T Consensus 88 ~~ 89 (353)
T PLN02896 88 AS 89 (353)
T ss_pred cc
Confidence 63
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.076 Score=47.50 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=51.2
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC----c-EEecCCCHHHHHH---h---cCCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA----D-AFLVSSDPAKVKA---A---MGTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~----~-~v~~~~~~~~~~~---~---~~~~ 248 (359)
++++||.|+ |.+|...+..+...|++|++++++++..+...+. .+. . ...|..+.+.+.. . .+++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 567899986 9999999999888999999999988766554222 221 1 1235555443322 2 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 83 d~vv~~ag~ 91 (280)
T PRK06914 83 DLLVNNAGY 91 (280)
T ss_pred eEEEECCcc
Confidence 999999874
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.23 Score=43.15 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=48.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHHH---HHcCCc-EEe--cCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAI---SKLGAD-AFL--VSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~---~~~g~~-~v~--~~~~~~~~~~~-------~~~ 247 (359)
.+.++||.|+ |.+|...+..+...|++|+++.++++. .+... +..+.. ..+ |..+.+.+..+ .++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG 83 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4568999986 999999999999999999887776542 22221 222322 122 44554433322 137
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|.++.+.|.
T Consensus 84 id~vi~~ag~ 93 (248)
T PRK05557 84 VDILVNNAGI 93 (248)
T ss_pred CCEEEECCCc
Confidence 8999998874
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.14 Score=44.88 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=47.9
Q ss_pred EEEECC-chHHHHHHHHHHHCCCeEEEEeCC-hhhHHHHHHHcC----Cc----EEecCCCHHHHHHh-------cCCcc
Q 018246 187 LGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-PKKESEAISKLG----AD----AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 187 VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-~~~~~~~~~~~g----~~----~v~~~~~~~~~~~~-------~~~~d 249 (359)
++|.|+ |.+|...++.+...|++|++++++ .++.+.+.+++. .. ...|..+.+.+.++ .+++|
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 81 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS 81 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence 788875 999999999998899999999987 555544433322 11 12244554433322 24789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+++.++|.
T Consensus 82 ~vi~~ag~ 89 (251)
T PRK07069 82 VLVNNAGV 89 (251)
T ss_pred EEEECCCc
Confidence 99999873
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.096 Score=43.44 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=50.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh------------------hHHHH---HHHcCC-cEEecCC---CHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK------------------KESEA---ISKLGA-DAFLVSS---DPA 239 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~------------------~~~~~---~~~~g~-~~v~~~~---~~~ 239 (359)
+|+|+|+|++|..+++.+...|. +++++|...- |.+.+ +++++. ..+.... +.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 48999999999999999989999 7999986651 11111 123321 1111111 122
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhcc
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLL 268 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l 268 (359)
.+.++..++|+|++|..+..+-....+.+
T Consensus 81 ~~~~~l~~~DlVi~~~d~~~~r~~i~~~~ 109 (174)
T cd01487 81 NLEGLFGDCDIVVEAFDNAETKAMLAESL 109 (174)
T ss_pred hHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 34445568999999988876333333433
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.085 Score=46.46 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=52.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.+.+|||.|+ |++|...+..+...|++|++++++.++.+.+.+ +.+.+ ...|..+.+.+.++ .+.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~ 89 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV 89 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4789999986 999999999988999999999988777654432 23322 12355554433322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.+.|.
T Consensus 90 d~li~~ag~ 98 (255)
T PRK06113 90 DILVNNAGG 98 (255)
T ss_pred CEEEECCCC
Confidence 999998874
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.1 Score=50.57 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=57.8
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEE
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v 251 (359)
..+++..+.--.+.+++|+|+|++|.+++..+...|++|++.++++++.+.+.+.++... ++.. .... ...+|++
T Consensus 320 ~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-~~~~---~~~~-l~~~DiV 394 (477)
T PRK09310 320 FSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-FPLE---SLPE-LHRIDII 394 (477)
T ss_pred HHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-echh---Hhcc-cCCCCEE
Confidence 334444333236788999999999999999999999999999999888777755554322 2111 1111 2478999
Q ss_pred EECCCChh
Q 018246 252 IDTVSAVH 259 (359)
Q Consensus 252 id~~g~~~ 259 (359)
++|++...
T Consensus 395 InatP~g~ 402 (477)
T PRK09310 395 INCLPPSV 402 (477)
T ss_pred EEcCCCCC
Confidence 99987654
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.14 Score=46.95 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=60.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.+.+|.|+|.|.+|.+.++-++..|.+|++..+..++.....++.|.... ...++....|+|+-++....
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-------s~~eaa~~ADVVvLaVPd~~~~~ 88 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-------TVAEAAKWADVIMILLPDEVQAE 88 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-------CHHHHHhcCCEEEEcCCHHHHHH
Confidence 57889999999999999999999999998877765544443356675421 12344567899999998654
Q ss_pred hH-HHHHhccccCCEEEEe
Q 018246 260 SL-APLLGLLKVNGKLVTV 277 (359)
Q Consensus 260 ~~-~~~~~~l~~~G~~v~~ 277 (359)
.+ ......++++..++..
T Consensus 89 V~~~~I~~~Lk~g~iL~~a 107 (330)
T PRK05479 89 VYEEEIEPNLKEGAALAFA 107 (330)
T ss_pred HHHHHHHhcCCCCCEEEEC
Confidence 12 2344456666555433
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.2 Score=45.50 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=56.9
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---hHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH---SLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~~ 262 (359)
+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+...+.+.....|+|+-++.... +++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l-~~~g~~~~---~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~ 77 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAM-KEDRTTGV---ANLRELSQRLSAPRVVWVMVPHGIVDAVLE 77 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCccc---CCHHHHHhhcCCCCEEEEEcCchHHHHHHH
Confidence 57889999999988888888899999999999998887 45553322 122222222235677777766542 122
Q ss_pred HHHhccccCCEEEEecC
Q 018246 263 PLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~ 279 (359)
.....++++-.+++++.
T Consensus 78 ~l~~~l~~g~ivid~st 94 (298)
T TIGR00872 78 ELAPTLEKGDIVIDGGN 94 (298)
T ss_pred HHHhhCCCCCEEEECCC
Confidence 33334445545555443
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.15 Score=45.51 Aligned_cols=167 Identities=14% Similarity=0.163 Sum_probs=95.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEECCCChh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMG--TMDYIIDTVSAVH 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~~ 259 (359)
....+|+.+|+|=+|.-.+.-|+.+|.+|++++|=+..-.- +--...+++|--+.+.+..... .+|+++--+-.-.
T Consensus 10 ~~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAm--qVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI~ 87 (394)
T COG0027 10 PQATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAM--QVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIA 87 (394)
T ss_pred CCCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhh--hhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhhh
Confidence 34556888999999999999999999999999976543211 1123467888778777777654 7888874332211
Q ss_pred hHHHHHhccccCCEEEEecCCCCCeeeC---HHHHHhcCcEEEEeec---CCHHHHHHHHHHHHhC-CCcccE-------
Q 018246 260 SLAPLLGLLKVNGKLVTVGLPEKPLEVP---IFALVGARRLVGGSNV---GGMKETQEMLDFCAKH-NIAADI------- 325 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~k~~~i~g~~~---~~~~~~~~~~~~l~~g-~i~~~~------- 325 (359)
.+.++..=..|..+|-... ...++.+ ...+-.+.+.+-.+.+ .+.++|.++.+.+--- ..||..
T Consensus 88 -td~L~elE~~G~~VVP~Ar-At~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGq 165 (394)
T COG0027 88 -TDALVELEEEGYTVVPNAR-ATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQ 165 (394)
T ss_pred -HHHHHHHHhCCceEccchH-HHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCCCeecccccccCCCCc
Confidence 3444555555556443321 1122222 2222223333333322 2233444443332211 224432
Q ss_pred -EEEccccHHHHHHHHHcCCc--cEEEEEE
Q 018246 326 -ELVRMDQINTAMERLAKSDV--KYRFVID 352 (359)
Q Consensus 326 -~~~~l~~~~~a~~~~~~~~~--~gkvvv~ 352 (359)
-+-+-+++++||+...++.. .+||+++
T Consensus 166 svv~~~e~ve~AW~~A~~g~R~~~~RVIVE 195 (394)
T COG0027 166 SVVRSPEDVEKAWEYAQQGGRGGSGRVIVE 195 (394)
T ss_pred eeecCHHHHHHHHHHHHhcCCCCCCcEEEE
Confidence 12368999999998886543 3788764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.15 Score=42.70 Aligned_cols=93 Identities=26% Similarity=0.320 Sum_probs=59.9
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAIS---KLGAD--AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+.++++||-+|+|. |..+..+++.. +.+|++++.+++..+.+.+ +++.. .++..+.. ....+.+|+|+..
T Consensus 29 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~---~~~~~~~D~v~~~ 104 (187)
T PRK08287 29 LHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP---IELPGKADAIFIG 104 (187)
T ss_pred CCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch---hhcCcCCCEEEEC
Confidence 36788898888754 56666666665 4599999999987666633 33322 22222211 1223479999864
Q ss_pred CCC---hhhHHHHHhccccCCEEEEe
Q 018246 255 VSA---VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~---~~~~~~~~~~l~~~G~~v~~ 277 (359)
... ...+..+.+.|+++|+++..
T Consensus 105 ~~~~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 105 GSGGNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred CCccCHHHHHHHHHHhcCCCeEEEEE
Confidence 322 12467888999999998774
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.13 Score=51.62 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=70.3
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChhhH-
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVHSL- 261 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~- 261 (359)
++|+|.|.|.+|+..++.++..|.++++++.++++.+.+ ++.|...++ |..+++.+++.. ...|.++-+.++...-
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-RKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 579999999999999999999999999999999999988 778865544 445555555543 4899999999886522
Q ss_pred --HHHHhccccCCEEEEe
Q 018246 262 --APLLGLLKVNGKLVTV 277 (359)
Q Consensus 262 --~~~~~~l~~~G~~v~~ 277 (359)
-...+...|.-+++.-
T Consensus 480 ~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 480 KIVELCQQHFPHLHILAR 497 (601)
T ss_pred HHHHHHHHHCCCCeEEEE
Confidence 2334556677777654
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.13 Score=45.92 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=73.1
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+..+....++..+---.|++|+|+|- ..+|.-.+.++...|+.|++..+... .
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~---------------------~ 194 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK---------------------N 194 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch---------------------h
Confidence 3567776666777776664468999999995 89999999999999999998654321 2
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+++-++|.+..+. -+.+++|..++++|...
T Consensus 195 l~~~~~~ADIvI~AvG~p~~i~--~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 195 LAELTKQADILIVAVGKPKLIT--ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred HHHHHHhCCEEEEecCCCCcCC--HHHcCCCCEEEEeeccc
Confidence 3344456899999999887443 45679999999998764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=40.92 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=56.4
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh-------------------hH---HHHHHHcC-CcEEecCC---
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK-------------------KE---SEAISKLG-ADAFLVSS--- 236 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~-------------------~~---~~~~~~~g-~~~v~~~~--- 236 (359)
..+|+|+|+|++|..++..+...|. +++++|...- |. +..++++. ...+....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 4689999999999999999988899 8888884321 11 11112332 22222111
Q ss_pred CHHHHHHhcCCccEEEECCCChhhHHHHHhccccCC-EEEEec
Q 018246 237 DPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNG-KLVTVG 278 (359)
Q Consensus 237 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G-~~v~~g 278 (359)
..+...++..++|+|++|..+......+.+.....+ .++..+
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 123344445689999999998663444444444444 444443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.11 Score=46.39 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
+..+++|.|+ |.+|...++.+...|++|++++++.++.+.+.. ..+... ..|..+.+.+..+ .+++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI 88 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 3458999986 999999999888899999999988776554422 233322 1355554433322 2478
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.++|.
T Consensus 89 d~vi~~Ag~ 97 (274)
T PRK07775 89 EVLVSGAGD 97 (274)
T ss_pred CEEEECCCc
Confidence 999998874
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.098 Score=46.80 Aligned_cols=93 Identities=27% Similarity=0.257 Sum_probs=59.2
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeE--EEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh--
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKV--TVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS-- 260 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V--~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~-- 260 (359)
.+|+|.|.|.+|.+.+...+..|..| +..+++.++.+.+ .++|...-. ..+.......+.|+||-++.-..+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-~~lgv~d~~---~~~~~~~~~~~aD~VivavPi~~~~~ 79 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-LELGVIDEL---TVAGLAEAAAEADLVIVAVPIEATEE 79 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-hhcCccccc---ccchhhhhcccCCEEEEeccHHHHHH
Confidence 57889999999999999999999865 4455555555555 456642111 011112333478999999987652
Q ss_pred -HHHHHhccccCCEEEEecCCC
Q 018246 261 -LAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 261 -~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+......++++..+.++++..
T Consensus 80 ~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 80 VLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHHhcccCCCCCEEEeccccc
Confidence 233333455677777876543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.04 Score=47.88 Aligned_cols=94 Identities=27% Similarity=0.359 Sum_probs=62.8
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCC-------CHHHHHHhcCCccEEEEC--
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSS-------DPAKVKAAMGTMDYIIDT-- 254 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~-------~~~~~~~~~~~~d~vid~-- 254 (359)
|.+||-.|+|+ |++..-||| +|+.|++++.+++-.+.+.++.-.+++.+.. ....++...+.||.|+..
T Consensus 90 g~~ilDvGCGg-GLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGG-GLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCc-cccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 47788888854 667777776 5899999999999888774443333333221 012344455679998852
Q ss_pred ---CCCh-hhHHHHHhccccCCEEEEecC
Q 018246 255 ---VSAV-HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 255 ---~g~~-~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+-.+ ..++.+++.++|+|+++..-.
T Consensus 168 leHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 2222 246788999999999987643
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.099 Score=46.14 Aligned_cols=74 Identities=26% Similarity=0.327 Sum_probs=49.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++.. +.+.+ ..+.+ ...|..+.+.+.++ .+.+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI 85 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 999999999999999999999987532 22222 23432 22355554332222 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+++.++|.
T Consensus 86 d~lv~nAg~ 94 (260)
T PRK12823 86 DVLINNVGG 94 (260)
T ss_pred eEEEECCcc
Confidence 999999873
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.17 Score=46.59 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCc---------EEecCCCHHHHHHhcCCccEEEE
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGAD---------AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~---------~v~~~~~~~~~~~~~~~~d~vid 253 (359)
.++|||+|+|. |.++..++++.+. +|++++.+++-.+.+.+-++.. .++..+...++.+..+.||+||-
T Consensus 104 pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 46899998753 4456677777665 8999999998888774445421 12222222445444458999974
Q ss_pred CCCC------------hhhHH-HHHhccccCCEEEEe
Q 018246 254 TVSA------------VHSLA-PLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~------------~~~~~-~~~~~l~~~G~~v~~ 277 (359)
-+.. ...+. .+.+.|+++|.++.-
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 3211 12355 678899999998754
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.079 Score=47.14 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=50.0
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
++||.|+ |++|...+..+...|++|+++++++++.+.+.+. .+.+. ..|..+.+.+..+ .+++|++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l 81 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI 81 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6889886 9999999998888999999999998876654332 23222 1244443333222 2479999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
|.++|.
T Consensus 82 I~~ag~ 87 (270)
T PRK05650 82 VNNAGV 87 (270)
T ss_pred EECCCC
Confidence 999884
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.13 Score=45.85 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=73.8
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+....+..++...---.|++|+|+|- ..+|.=.+.++...|+.|++..+....
T Consensus 137 ~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~--------------------- 195 (284)
T PRK14177 137 TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQN--------------------- 195 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC---------------------
Confidence 3567766666666766654468999999995 899999999999999999987644322
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+++.+...|+++-++|.+..+. -..+++|..++++|...
T Consensus 196 l~~~~~~ADIvIsAvGk~~~i~--~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 196 LPSIVRQADIIVGAVGKPEFIK--ADWISEGAVLLDAGYNP 234 (284)
T ss_pred HHHHHhhCCEEEEeCCCcCccC--HHHcCCCCEEEEecCcc
Confidence 2334456899999999988443 57899999999999754
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.12 Score=46.09 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=60.6
Q ss_pred CEEEEECCchHHHHHHHHHHH--CCCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKA--FGLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~--~g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-+|.|+|.|.+|...++.+.. .+.++. +.++++++.+.+.+++|....+ .+. .++....|+|+.|++.....
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~--~~~---eell~~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV--VPL---DQLATHADIVVEAAPASVLR 81 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc--CCH---HHHhcCCCEEEECCCcHHHH
Confidence 478999999999988877765 367766 5677777776665677743322 222 23335689999999987645
Q ss_pred HHHHhccccCCEEEEe
Q 018246 262 APLLGLLKVNGKLVTV 277 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~ 277 (359)
+....+|+.+..++..
T Consensus 82 e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 82 AIVEPVLAAGKKAIVL 97 (271)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 6667777777666543
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.1 Score=45.93 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-CCcEE-ecCCC-HHHHHHhc-CCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-GADAF-LVSSD-PAKVKAAM-GTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-g~~~v-~~~~~-~~~~~~~~-~~~d~vid~~g~ 257 (359)
.+.+|||+|+ |.+|..++..+...|.+|+++.|++++........ ++..+ .|..+ .+.+.... .++|+||.+.|.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 4678999996 99999999988888999999999887754432211 23222 24443 23343444 589999988764
Q ss_pred hh-------------hHHHHHhcccc--CCEEEEecCC
Q 018246 258 VH-------------SLAPLLGLLKV--NGKLVTVGLP 280 (359)
Q Consensus 258 ~~-------------~~~~~~~~l~~--~G~~v~~g~~ 280 (359)
.. ....+++.+.. .++++.++..
T Consensus 96 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 96 RRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred CcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 21 12334444443 3688887654
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.12 Score=47.36 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=61.2
Q ss_pred EEEEECCchHHHHHHHHHHHCC----CeEEEEeC--ChhhHHHHHHHcCC--------------------c--EEecCCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG----LKVTVIST--SPKKESEAISKLGA--------------------D--AFLVSSD 237 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g----~~V~~v~~--~~~~~~~~~~~~g~--------------------~--~v~~~~~ 237 (359)
+|.|.|.|.+|+.+.+.+...+ .+|..+.. +.+.+.++. ++.- + .+...++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll-~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLL-RYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHH-hhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 4789999999999999988754 56666542 222333442 2221 0 1111122
Q ss_pred HHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 238 PAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 238 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
++.+.....++|+|++|+|.....+.+...++.|++.|.++.+
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence 2222222248999999999887778889999999899988765
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.08 Score=48.32 Aligned_cols=85 Identities=33% Similarity=0.406 Sum_probs=60.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
.|++|.|+|.|.+|...+++++.+|.+|++.++.... ...+... ..+.++....|+|..++...
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~-----~~~~~~~-------~~l~ell~~sDvv~lh~Plt~~T~ 211 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN-----KNEEYER-------VSLEELLKTSDIISIHAPLNEKTK 211 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc-----cccCcee-------ecHHHHhhcCCEEEEeCCCCchhh
Confidence 6899999999999999999999999999999975321 1112111 12445556678887766522
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|+++..+|.++-
T Consensus 212 ~li~~~~~~~Mk~~a~lIN~aR 233 (311)
T PRK08410 212 NLIAYKELKLLKDGAILINVGR 233 (311)
T ss_pred cccCHHHHHhCCCCeEEEECCC
Confidence 112 467888999988888854
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.22 Score=44.55 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCCCEEEEECC-chHHHH-HHHHHHHCCCeEEEEeCChhhHHHHHHH----cCC---cEEecCCCHHH----HHHhcC--
Q 018246 182 EPGKHLGVAGL-GGLGHV-AVKIGKAFGLKVTVISTSPKKESEAISK----LGA---DAFLVSSDPAK----VKAAMG-- 246 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~-a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~---~~v~~~~~~~~----~~~~~~-- 246 (359)
+-|+..+|.|+ .++|.+ |-+||+ .|.+|+.++|++++++...++ .++ ..++|..+++. +.+...
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~ 125 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGL 125 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCC
Confidence 45788899987 899988 555555 899999999999998766443 332 24566655432 333322
Q ss_pred CccEEEECCCChh---------------------------hHHH-HHhcc-ccCCEEEEecCCCCCeeeCHHHH
Q 018246 247 TMDYIIDTVSAVH---------------------------SLAP-LLGLL-KVNGKLVTVGLPEKPLEVPIFAL 291 (359)
Q Consensus 247 ~~d~vid~~g~~~---------------------------~~~~-~~~~l-~~~G~~v~~g~~~~~~~~~~~~~ 291 (359)
.+-+.++++|... ..+. +-.++ +..|.++.+|...+..+.+....
T Consensus 126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s~ 199 (312)
T KOG1014|consen 126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSV 199 (312)
T ss_pred ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHHH
Confidence 4566678887431 0011 11233 35688889888776666555443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.2 Score=44.24 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=63.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCC----
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVS---- 256 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g---- 256 (359)
.++++||-+|+|. |..+..+++.. +.+|++++.+++-.+.+ ++.+.+.+. .+ ...+ ...+.||+|+....
T Consensus 28 ~~~~~vLDlGcG~-G~~~~~l~~~~p~~~v~gvD~s~~~~~~a-~~~~~~~~~-~d-~~~~-~~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 28 ERARRVVDLGCGP-GNLTRYLARRWPGAVIEALDSSPEMVAAA-RERGVDART-GD-VRDW-KPKPDTDVVVSNAALQWV 102 (255)
T ss_pred CCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHH-HhcCCcEEE-cC-hhhC-CCCCCceEEEEehhhhhC
Confidence 6788999998865 66677777765 67999999999888877 454544332 11 1111 11247999987443
Q ss_pred -C-hhhHHHHHhccccCCEEEEe
Q 018246 257 -A-VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 257 -~-~~~~~~~~~~l~~~G~~v~~ 277 (359)
. ...+..+.+.|+|+|+++..
T Consensus 103 ~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CCHHHHHHHHHHhCCCCcEEEEE
Confidence 2 23567889999999999875
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.38 Score=44.87 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCCCEEEEECC-chHHHH--HHHHHHHCCCeEEEEeCChh--h-------------HHHHHHHcCCcE-E--ecCCCHHH
Q 018246 182 EPGKHLGVAGL-GGLGHV--AVKIGKAFGLKVTVISTSPK--K-------------ESEAISKLGADA-F--LVSSDPAK 240 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~--a~~la~~~g~~V~~v~~~~~--~-------------~~~~~~~~g~~~-v--~~~~~~~~ 240 (359)
..++++||.|+ +++|++ .++.+ ..|++|+++....+ + .+.+.++.|... . .|-.+.+.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 45688999986 899999 56666 88999888874221 1 233335666432 2 24444333
Q ss_pred HHHh-------cCCccEEEECCCCh
Q 018246 241 VKAA-------MGTMDYIIDTVSAV 258 (359)
Q Consensus 241 ~~~~-------~~~~d~vid~~g~~ 258 (359)
+.++ .+++|+++++++.+
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 2222 25799999998876
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.1 Score=46.20 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=49.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHH----cCCc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISK----LGAD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ +++|.+++..+...|++|+++.+ ++++.+.+.++ .+.+ ...|..+.+.+.++ .+
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 86 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD 86 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5789999986 99999999999999999988864 44444433222 2322 22355554433332 24
Q ss_pred CccEEEECCC
Q 018246 247 TMDYIIDTVS 256 (359)
Q Consensus 247 ~~d~vid~~g 256 (359)
.+|++++++|
T Consensus 87 ~id~lv~nAg 96 (260)
T PRK08416 87 RVDFFISNAI 96 (260)
T ss_pred CccEEEECcc
Confidence 7899999885
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.081 Score=51.02 Aligned_cols=71 Identities=24% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh-hhH----HHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP-KKE----SEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~-~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+++|+|+|+|.+|+.++..+...|++|+++++.+ +.. +++ .+.|.+.+.... .+ ...+++|+|+.+.|.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~-~~---~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEEL-GELGIELVLGEY-PE---EFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHH-HhcCCEEEeCCc-ch---hHhhcCCEEEECCCC
Confidence 46889999999999999999999999999999875 222 222 345655332221 11 233579999998885
Q ss_pred h
Q 018246 258 V 258 (359)
Q Consensus 258 ~ 258 (359)
.
T Consensus 79 ~ 79 (450)
T PRK14106 79 P 79 (450)
T ss_pred C
Confidence 3
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.12 Score=46.92 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=56.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-------ecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-------LVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-------~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
+|+|+|+|.+|.+.+..+...|.+|+++++ +++.+.+ ++.|.... +.....+........+|++|-|+...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL-RERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHH-HhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 589999999999888888888999999999 7777666 55553211 00000011222335789999998865
Q ss_pred hhHHHHHhc----cccCCEEEEe
Q 018246 259 HSLAPLLGL----LKVNGKLVTV 277 (359)
Q Consensus 259 ~~~~~~~~~----l~~~G~~v~~ 277 (359)
. ++..+.. +.++..++.+
T Consensus 80 ~-~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 80 Q-LDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred C-HHHHHHHHHhhcCCCCEEEEe
Confidence 5 4444443 4445555544
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.12 Score=45.50 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHHH---HHcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAI---SKLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~---~~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.+.++||.|+ |++|.++++.+.+.|++|+++++++++ .+.+. ++.+.. ...|..+.+.+.++ .+.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 86 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA 86 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 999999999999999999999987542 23332 233422 12344444333322 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++.+.|.
T Consensus 87 id~li~~ag~ 96 (254)
T PRK06114 87 LTLAVNAAGI 96 (254)
T ss_pred CCEEEECCCC
Confidence 8999999984
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.087 Score=46.45 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=51.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH--HHHcCCc---EEecCCCHHHHHHhc-------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA--ISKLGAD---AFLVSSDPAKVKAAM-------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~--~~~~g~~---~v~~~~~~~~~~~~~-------~~~d 249 (359)
.+.++||.|+ |++|...++.+...|++|++++++++..+.. .++.+.. ...|..+.+.+..+. +++|
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRID 85 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 4678999986 9999999998888999999999888765222 1223422 223444444333322 4789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+++.++|.
T Consensus 86 ~vi~~ag~ 93 (258)
T PRK08628 86 GLVNNAGV 93 (258)
T ss_pred EEEECCcc
Confidence 99999983
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=47.30 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=62.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEECCC--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGTMDYIIDTVS-- 256 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g-- 256 (359)
.++.+||-+|+|. |..+..+++..+ .+|++++.+++-++.+.++.... .++. .+........+.+|+|+.+..
T Consensus 112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~-gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE-GDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe-ccHHhCCCCCCceeEEEEcChhh
Confidence 5778999998865 666777777764 59999999988877774433211 1111 111111111236998886432
Q ss_pred ----ChhhHHHHHhccccCCEEEEecC
Q 018246 257 ----AVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 257 ----~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
....+..+.+.|+++|+++.++.
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 12357889999999999988754
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.11 Score=47.70 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=59.3
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-----------EecCCCHHHHHHhcCCccEEEEC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-----------FLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-----------v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+|.|+|+|.+|...+..+...|.+|.++++++++.+.+ ++.+... +.... ...+.....|++|-|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEI-NADRENPRYLPGIKLPDNLRATT---DLAEALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHcCcccccCCCCcCCCCeEEeC---CHHHHHhCCCEEEEe
Confidence 58899999999999998888899999999998887777 3433110 11111 122334578999999
Q ss_pred CCChhhHHHHHh----ccccCCEEEEe
Q 018246 255 VSAVHSLAPLLG----LLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~~~~~~~~~~----~l~~~G~~v~~ 277 (359)
+.... +...+. .+.++..++.+
T Consensus 79 v~~~~-~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 79 VPSQA-LREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred CCHHH-HHHHHHHHHhhcCCCCEEEEE
Confidence 99865 444433 34455566666
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.065 Score=49.06 Aligned_cols=33 Identities=42% Similarity=0.687 Sum_probs=31.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~ 215 (359)
.|++|-|+|.|.+|...++.++.+|.+|++.++
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEECC
Confidence 488999999999999999999999999999998
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.082 Score=48.40 Aligned_cols=74 Identities=19% Similarity=0.138 Sum_probs=50.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH--H-cC----CcE-EecCCCHHHHHHhcCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS--K-LG----ADA-FLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~--~-~g----~~~-v~~~~~~~~~~~~~~~~d~vid 253 (359)
.|++|||.|+ |.+|...+..+...|.+|+++.++.++.+...+ . .+ ... ..|..+.+.+..+..++|+||.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 4789999986 999999999888899999988887664333211 1 11 111 1233444455666668999999
Q ss_pred CCC
Q 018246 254 TVS 256 (359)
Q Consensus 254 ~~g 256 (359)
+++
T Consensus 84 ~A~ 86 (322)
T PLN02986 84 TAS 86 (322)
T ss_pred eCC
Confidence 886
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.15 Score=46.27 Aligned_cols=89 Identities=24% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc-CCccEEEECCCChhh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM-GTMDYIIDTVSAVHS 260 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-~~~d~vid~~g~~~~ 260 (359)
-.+.+|.|+|.|.+|.+.+..++..|.+|+++++++. .+.+ +++|... ..+. .++. ...|+|+-|+....
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a-~~~gv~~---~~~~---~e~~~~~aDvVilavp~~~- 104 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIA-AELGVSF---FRDP---DDFCEEHPDVVLLCTSILS- 104 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHH-HHcCCee---eCCH---HHHhhCCCCEEEEecCHHH-
Confidence 3556899999999999999999888999999998864 3444 5677642 2222 2222 36899999998654
Q ss_pred HHHHHh-----ccccCCEEEEecC
Q 018246 261 LAPLLG-----LLKVNGKLVTVGL 279 (359)
Q Consensus 261 ~~~~~~-----~l~~~G~~v~~g~ 279 (359)
+...+. .++++..+++++.
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCC
Confidence 333333 3556777777766
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.15 Score=41.20 Aligned_cols=87 Identities=22% Similarity=0.212 Sum_probs=58.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
.+++|.|+|-|.-|.+.++-+|..|.+|++..+..+ ..+.+ ++-|+... .+.+...+.|+|+-.+....
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A-~~~Gf~v~-------~~~eAv~~aDvV~~L~PD~~q~ 74 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKA-KADGFEVM-------SVAEAVKKADVVMLLLPDEVQP 74 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHH-HHTT-ECC-------EHHHHHHC-SEEEE-S-HHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHH-HHCCCeec-------cHHHHHhhCCEEEEeCChHHHH
Confidence 578999999999999999999999999999988887 45555 77786432 23445567899998887643
Q ss_pred -hH-HHHHhccccCCEEEEe
Q 018246 260 -SL-APLLGLLKVNGKLVTV 277 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~ 277 (359)
++ +.....|+++-.+++.
T Consensus 75 ~vy~~~I~p~l~~G~~L~fa 94 (165)
T PF07991_consen 75 EVYEEEIAPNLKPGATLVFA 94 (165)
T ss_dssp HHHHHHHHHHS-TT-EEEES
T ss_pred HHHHHHHHhhCCCCCEEEeC
Confidence 33 4555688888877765
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.084 Score=48.09 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=58.8
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH------HHHhcCCccEEEECCCChh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK------VKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~------~~~~~~~~d~vid~~g~~~ 259 (359)
+|+|+|+|++|...+-.+...|.+|+.++|.+++.+.+.++-|.. +........ .....+.+|+||-|+-...
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLT-LVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeE-EeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 599999999998877777778999999999887877774343432 111111000 0011237899999887654
Q ss_pred ---hHHHHHhccccCCEEEEe
Q 018246 260 ---SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 260 ---~~~~~~~~l~~~G~~v~~ 277 (359)
++..+...+.++..++.+
T Consensus 83 ~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 83 AEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred HHHHHHHHHhhCCCCCEEEEE
Confidence 233444556677777766
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.099 Score=52.51 Aligned_cols=92 Identities=16% Similarity=0.288 Sum_probs=68.6
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChhhH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVHSL 261 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~ 261 (359)
.++|+|.|.|.+|+..++.++..|.++++++.++++.+.+ ++.|.+.++ |.++.+.+++.. ..+|.++-+.++...-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n 478 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS 478 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence 3679999999999999999999999999999999999988 778865444 345555555443 4899999999876512
Q ss_pred ---HHHHhccccCCEEEE
Q 018246 262 ---APLLGLLKVNGKLVT 276 (359)
Q Consensus 262 ---~~~~~~l~~~G~~v~ 276 (359)
-...+.+.|.-+++.
T Consensus 479 ~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 479 LQLVELVKEHFPHLQIIA 496 (621)
T ss_pred HHHHHHHHHhCCCCeEEE
Confidence 234445556655544
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.093 Score=49.17 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=51.4
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----------CCcEE-ecCCCHHHHHHhcCCc
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----------GADAF-LVSSDPAKVKAAMGTM 248 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----------g~~~v-~~~~~~~~~~~~~~~~ 248 (359)
..+++|||.|+ |.+|..++..+...|++|++++++.+..+.+ +++ +...+ .|..+.+.+.++..++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~ 129 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGC 129 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhc
Confidence 45789999986 9999999999999999999988876655444 222 12222 2455555566666678
Q ss_pred cEEEECC
Q 018246 249 DYIIDTV 255 (359)
Q Consensus 249 d~vid~~ 255 (359)
|.||.+.
T Consensus 130 d~V~hlA 136 (367)
T PLN02686 130 AGVFHTS 136 (367)
T ss_pred cEEEecC
Confidence 8887654
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.1 Score=47.94 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=68.2
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHH-HCCC-eEEEEeCChhhHHHHHHHc----CCcEEecCCCHHHHHHhcCCcc
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGK-AFGL-KVTVISTSPKKESEAISKL----GADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~-~~g~-~V~~v~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d 249 (359)
+...+ ..-.++.|+|+|..|...+.... ..+. +|.+.++++++.+.+.+++ +..... ..+ .+++.. .|
T Consensus 122 ~~La~-~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~-~~~---~~~~l~-aD 195 (326)
T PRK06046 122 KYLAR-KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTV-AED---IEEACD-CD 195 (326)
T ss_pred HHhCC-CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEE-eCC---HHHHhh-CC
Confidence 34444 44568899999999998887666 4466 7888999998887776655 322211 222 223334 89
Q ss_pred EEEECCCChh-hHHHHHhccccCCEEEEecCCCC-CeeeCH
Q 018246 250 YIIDTVSAVH-SLAPLLGLLKVNGKLVTVGLPEK-PLEVPI 288 (359)
Q Consensus 250 ~vid~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~ 288 (359)
+|+.|+++.. .+. .+.++++-.+..+|.... ...++.
T Consensus 196 iVv~aTps~~P~~~--~~~l~~g~hV~~iGs~~p~~~El~~ 234 (326)
T PRK06046 196 ILVTTTPSRKPVVK--AEWIKEGTHINAIGADAPGKQELDP 234 (326)
T ss_pred EEEEecCCCCcEec--HHHcCCCCEEEecCCCCCccccCCH
Confidence 9999888643 222 345689889889987553 234443
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.1 Score=45.67 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=51.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc-E--EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD-A--FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~-~--v~~~~~~~~~~~~-------~~~~ 248 (359)
++.++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+. .+.. . ..|..+.+.+..+ .+++
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 9999999999999999999999988776554222 2321 1 2244444433332 2378
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|++|.+.+
T Consensus 82 d~vi~~ag 89 (250)
T TIGR03206 82 DVLVNNAG 89 (250)
T ss_pred CEEEECCC
Confidence 99999987
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.099 Score=45.01 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=52.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh----c-CCccEEEECCCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA----M-GTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~----~-~~~d~vid~~g~ 257 (359)
++++|.|+ |.+|...++.+...|++|++++++++..+.+ +..+.. ...|-.+.+.+.++ . .++|+++.+.|.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL-QALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH-HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 46888886 9999999988888899999999998877666 445543 33455555444443 2 268999998775
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.11 Score=47.30 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=49.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh----------hhHHHHH---HHcCCc---EEecCCCHHHHHHh-
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP----------KKESEAI---SKLGAD---AFLVSSDPAKVKAA- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~----------~~~~~~~---~~~g~~---~v~~~~~~~~~~~~- 244 (359)
.++++||.|+ +++|+++++.+...|++|++++++. ++.+.+. +..|.. ...|-.+.+.+..+
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 86 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV 86 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 4688999986 8999999999999999999999873 3333322 333432 12344444333322
Q ss_pred ------cCCccEEEECC-C
Q 018246 245 ------MGTMDYIIDTV-S 256 (359)
Q Consensus 245 ------~~~~d~vid~~-g 256 (359)
.+.+|++++++ |
T Consensus 87 ~~~~~~~g~iDilVnnA~g 105 (305)
T PRK08303 87 ERIDREQGRLDILVNDIWG 105 (305)
T ss_pred HHHHHHcCCccEEEECCcc
Confidence 24789999988 5
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.071 Score=54.15 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=53.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc----EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD----AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~----~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|.++++.+...|++|++++++.++.+...+++ +.. ...|-.+.+.+.++ .+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g 492 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG 492 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4788999986 99999999999889999999999987765553332 321 22355554443332 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 493 ~iDilV~nAG~ 503 (676)
T TIGR02632 493 GVDIVVNNAGI 503 (676)
T ss_pred CCcEEEECCCC
Confidence 79999999984
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.097 Score=46.32 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=61.9
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCCh------hhHHHHHHHcCCc--EEecCCCHHHHHHh-------
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSP------KKESEAISKLGAD--AFLVSSDPAKVKAA------- 244 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~------~~~~~~~~~~g~~--~v~~~~~~~~~~~~------- 244 (359)
.|++++|.|+ +++|+++++.+...|++|+++.++. +..+.+.++.+.. ...|-.+.+.+..+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence 4688999985 5999999999989999998876433 2233332222211 12355554433322
Q ss_pred cCCccEEEECCCCh-------h----------------------hHHHHHhccccCCEEEEecCCC
Q 018246 245 MGTMDYIIDTVSAV-------H----------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 245 ~~~~d~vid~~g~~-------~----------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+.+|++++++|.. . ..+.++..|+.+|+++.++...
T Consensus 85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~ 150 (258)
T PRK07370 85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLG 150 (258)
T ss_pred cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence 24799999998731 0 1133555667789998886543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.099 Score=47.95 Aligned_cols=88 Identities=16% Similarity=0.313 Sum_probs=62.3
Q ss_pred CCCEEEEECCchHHHHHHHHHH-HCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGK-AFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~-~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
.|++|.|+|.|.+|...++.++ .+|.+|++.++..... .. ..++.... .+.++....|+|..+..-..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~-~~~~~~~~-------~l~ell~~sDvv~lh~plt~~T 214 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AE-ERFNARYC-------DLDTLLQESDFVCIILPLTDET 214 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hH-HhcCcEec-------CHHHHHHhCCEEEEeCCCChHH
Confidence 6899999999999999999998 8999999888764221 11 34444321 23455567898887665322
Q ss_pred --hH-HHHHhccccCCEEEEecC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..+|.++-
T Consensus 215 ~~li~~~~l~~mk~ga~lIN~aR 237 (323)
T PRK15409 215 HHLFGAEQFAKMKSSAIFINAGR 237 (323)
T ss_pred hhccCHHHHhcCCCCeEEEECCC
Confidence 12 467889999999988853
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.14 Score=50.37 Aligned_cols=88 Identities=26% Similarity=0.405 Sum_probs=65.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|++|.|+|.|.+|...++.++.+|.+|++.++...+ +.. ..+|...+ .+.++....|+|+.++....
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-~~~g~~~~-------~l~ell~~aDiV~l~lP~t~~t~ 209 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-AQLGVELV-------SLDELLARADFITLHTPLTPETR 209 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-HhcCCEEE-------cHHHHHhhCCEEEEccCCChHhh
Confidence 5889999999999999999999999999999985432 222 45565433 13445557899988777432
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..++.++-
T Consensus 210 ~li~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 210 GLIGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred cCcCHHHHhcCCCCeEEEECCC
Confidence 22 467888999998888863
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.12 Score=48.82 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHH------HHHHHc-CCcE-EecCCCHHHHHHhcC----Cc
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKES------EAISKL-GADA-FLVSSDPAKVKAAMG----TM 248 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~------~~~~~~-g~~~-v~~~~~~~~~~~~~~----~~ 248 (359)
..+.+|||.|+ |.+|..+++.+...|.+|++++++.++.+ ...+.. +... ..|..+.+.+.++.. ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 56778999986 99999999999889999999998875421 111122 2332 235566665555443 69
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|+||+|++.
T Consensus 138 D~Vi~~aa~ 146 (390)
T PLN02657 138 DVVVSCLAS 146 (390)
T ss_pred cEEEECCcc
Confidence 999998864
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=43.93 Aligned_cols=93 Identities=23% Similarity=0.260 Sum_probs=62.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC---
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA--- 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~--- 257 (359)
.++++||-+|+|. |..+..+++.. +.+|++++.+++..+.+.+.+..-.++..+-.+. .....+|+|+....-
T Consensus 30 ~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~--~~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 30 ENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW--QPPQALDLIFANASLQWL 106 (258)
T ss_pred cCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc--CCCCCccEEEEccChhhC
Confidence 6788999998763 56677778776 4699999999998888754443222322221111 112378999865431
Q ss_pred ---hhhHHHHHhccccCCEEEEe
Q 018246 258 ---VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 258 ---~~~~~~~~~~l~~~G~~v~~ 277 (359)
...+..+.+.|+++|.++..
T Consensus 107 ~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 107 PDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEE
Confidence 23578899999999999875
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.16 Score=45.30 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=73.8
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+..+.+..++..+---.|++|+|+|- ..+|.=.+.++...||.|++..+....
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~d--------------------- 194 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD--------------------- 194 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCC---------------------
Confidence 3567777776777777665458999999995 899999999999999999887643221
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.+...|+++-++|.+..+. -..++++..++++|...
T Consensus 195 l~~~~k~ADIvIsAvGkp~~i~--~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 195 LKSHTTKADILIVAVGKPNFIT--ADMVKEGAVVIDVGINH 233 (282)
T ss_pred HHHHhhhcCEEEEccCCcCcCC--HHHcCCCcEEEEecccc
Confidence 2333456899999999988443 37899999999999753
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.17 Score=45.01 Aligned_cols=99 Identities=26% Similarity=0.413 Sum_probs=59.1
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhH----------------------HHHHHHcCCc-EEecCC--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKE----------------------SEAISKLGAD-AFLVSS-- 236 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~----------------------~~~~~~~g~~-~v~~~~-- 236 (359)
.+.+|+|+|+|++|..++..+...|. ++++++...-.. .+.+.+++.. .+....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~ 108 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF 108 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence 45789999999999999999999997 899988552111 1111233321 121111
Q ss_pred -CHHHHHHhc-CCccEEEECCCChhhHHHHHhcc-ccCCEEEEecCCC
Q 018246 237 -DPAKVKAAM-GTMDYIIDTVSAVHSLAPLLGLL-KVNGKLVTVGLPE 281 (359)
Q Consensus 237 -~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~ 281 (359)
..+...++. ..+|+|+||.+....-..+.+.. +.+=.++..|+..
T Consensus 109 i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 109 ITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred cChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 123344444 47999999999854233333333 3344566665544
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.096 Score=45.85 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=49.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEE-EeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTV-ISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~-v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
++.++||.|+ |.+|+.++..+...|++|++ .+++.++.+.+.+ ..+... ..|..+.+.+..+ .+.
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR 82 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 99999999999999998876 4666665544322 234321 2344444433332 246
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|.+.|.
T Consensus 83 id~vi~~ag~ 92 (250)
T PRK08063 83 LDVFVNNAAS 92 (250)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=45.45 Aligned_cols=75 Identities=25% Similarity=0.405 Sum_probs=50.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH--HHHcCCc---EEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA--ISKLGAD---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~--~~~~g~~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
.+.+++|.|+ |.+|...++.+...|++|++++++++..+.. .++.+.. ...|..+.+.+.++ .+.+|
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id 84 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID 84 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678999986 9999999999999999999999887532222 1222322 12344554433332 24789
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|.+.|.
T Consensus 85 ~vi~~ag~ 92 (263)
T PRK08226 85 ILVNNAGV 92 (263)
T ss_pred EEEECCCc
Confidence 99998884
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.052 Score=47.75 Aligned_cols=72 Identities=22% Similarity=0.275 Sum_probs=49.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|...++.+...|++|+++++++++. . ...... ...|..+.+.+.++ .+.+|++|.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~--~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 81 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET--V-DGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVN 81 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh--h-cCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4788999986 9999999999999999999999887541 1 111121 22344554433332 246899999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
+.|.
T Consensus 82 ~ag~ 85 (252)
T PRK07856 82 NAGG 85 (252)
T ss_pred CCCC
Confidence 8873
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=47.87 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc-E--EecCCCHHHHHHhcCCccEEEECC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD-A--FLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+++++||-+|+|. |..+..+++..|++|++++.+++..+.+.+ +.|.. . ++..+ .....-..+.||+|+..-
T Consensus 117 ~~~~~VLDiGCG~-G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D-~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGI-GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD-ALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCC-CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC-cccCCCCCCCccEEEECC
Confidence 6788999998764 556778888789999999999987665522 22321 1 11111 101100123799998643
Q ss_pred CC------hhhHHHHHhccccCCEEEEec
Q 018246 256 SA------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 256 g~------~~~~~~~~~~l~~~G~~v~~g 278 (359)
.. ...+..+.+.|+|||+++...
T Consensus 195 ~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 32 235678899999999998864
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.13 Score=45.84 Aligned_cols=85 Identities=22% Similarity=0.293 Sum_probs=58.2
Q ss_pred EEEEECCchHHHHHHHHHHHCC---CeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g---~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+|.|+|+|.+|.+.+..+...| .+|+++++++++.+.+.+++|... . .+. .+.....|+||-|+.... +.
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~-~--~~~---~~~~~~advVil~v~~~~-~~ 76 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRA-A--TDN---QEAAQEADVVVLAVKPQV-ME 76 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCee-c--CCh---HHHHhcCCEEEEEcCHHH-HH
Confidence 5889999999999888888777 589999999988877755556532 1 111 122346799999887665 55
Q ss_pred HHHhccccC--CEEEEe
Q 018246 263 PLLGLLKVN--GKLVTV 277 (359)
Q Consensus 263 ~~~~~l~~~--G~~v~~ 277 (359)
..++.+++. ..++.+
T Consensus 77 ~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 77 EVLSELKGQLDKLVVSI 93 (267)
T ss_pred HHHHHHHhhcCCEEEEe
Confidence 555555542 344444
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.36 Score=36.96 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=59.1
Q ss_pred EEEEECCchHHHHHHHHHHHC--CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCChhh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF--GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAVHS 260 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~--g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~~ 260 (359)
+|.|+|.|.+|......++.. +.++. +.++++++.+.+.+++|.. .+ ++. .++. ..+|+|+.++....-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~--~~~---~~ll~~~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VY--TDL---EELLADEDVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EE--SSH---HHHHHHTTESEEEEESSGGGH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-ch--hHH---HHHHHhhcCCEEEEecCCcch
Confidence 578999999999988767666 34655 5677877888777888887 32 322 2222 279999998887664
Q ss_pred HHHHHhccccCCEEEEe
Q 018246 261 LAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~ 277 (359)
.+.+..+++.|-. +++
T Consensus 76 ~~~~~~~l~~g~~-v~~ 91 (120)
T PF01408_consen 76 AEIAKKALEAGKH-VLV 91 (120)
T ss_dssp HHHHHHHHHTTSE-EEE
T ss_pred HHHHHHHHHcCCE-EEE
Confidence 6666677766664 444
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.31 Score=42.61 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=61.3
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC-hhhHHHHH---HHcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-PKKESEAI---SKLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
+.++||.|+ |.+|...++-+...|++|+++.++ .++..... +..+.. ...|..+.+.+.++ .+++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGVA 85 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 578999986 999999998888899998776643 33332221 233322 12344444333222 2478
Q ss_pred cEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 249 DYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 249 d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
|++|.+.|.. ...+.+.+.++..|+++.++...
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~ 143 (252)
T PRK06077 86 DILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVA 143 (252)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchh
Confidence 9999999731 01234455666788999987644
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.18 Score=45.01 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=73.6
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+..+.+..++..+---.|++|+|+|- ..+|.=.+.++...++.|++..+....
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~n--------------------- 193 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD--------------------- 193 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC---------------------
Confidence 3567777776777776654458999999995 799999999999999999976654222
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+++.+...|+++-++|.+..+. -..+++|..++++|...
T Consensus 194 l~~~~~~ADIvIsAvGkp~~i~--~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 194 LSLYTRQADLIIVAAGCVNLLR--SDMVKEGVIVVDVGINR 232 (282)
T ss_pred HHHHHhhCCEEEEcCCCcCccC--HHHcCCCCEEEEecccc
Confidence 2334456899999999988443 45899999999999653
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.13 Score=43.03 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=76.2
Q ss_pred ccccchhhhhhhHhHhcCC---------CCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc
Q 018246 162 APLLCAGITVYSPMKYYGM---------TEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD 230 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~---------~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~ 230 (359)
..+||+....+..|+...- --.|++|+|+|- ..+|.=.+.++...||+|++.+.+.-.. . .+-+ ..
T Consensus 31 ~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~-~~~~~~~ 107 (197)
T cd01079 31 SILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--F-TRGESIR 107 (197)
T ss_pred CccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--c-ccccccc
Confidence 3466766666666665532 257999999995 7999999999999999999886432111 0 0000 00
Q ss_pred EEecC-CC-HHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 231 AFLVS-SD-PAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 231 ~v~~~-~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+--.. .+ ...+.+.....|+|+-++|.+. +.---+.+++|..++++|...
T Consensus 108 hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~-~~i~~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 108 HEKHHVTDEEAMTLDCLSQSDVVITGVPSPN-YKVPTELLKDGAICINFASIK 159 (197)
T ss_pred cccccccchhhHHHHHhhhCCEEEEccCCCC-CccCHHHcCCCcEEEEcCCCc
Confidence 00000 11 1225566778999999999988 322357899999999998763
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.1 Score=45.58 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=49.9
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc-E--EecCCCHHHHHHh----cCCccEEE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD-A--FLVSSDPAKVKAA----MGTMDYII 252 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~-~--v~~~~~~~~~~~~----~~~~d~vi 252 (359)
++++|.|+ |++|...++.+.+.|++|+++++++++.+...+++ +.. . ..|..+.+.+.++ ...+|+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 47899886 99999999999999999999999988765543332 111 1 1244444333332 23679999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
.++|.
T Consensus 82 ~~ag~ 86 (243)
T PRK07102 82 IAVGT 86 (243)
T ss_pred ECCcC
Confidence 88764
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=45.27 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=50.9
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc--EE--ecCC--CHHH-------HHHh
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD--AF--LVSS--DPAK-------VKAA 244 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~--~v--~~~~--~~~~-------~~~~ 244 (359)
.++.+++|.|+ |.+|...++.+...|++|++++++.++.+.+.++ .+.. .+ .+.. +.+. +.+.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 47889999986 9999999998888899999999998765444332 2321 12 2222 2222 2222
Q ss_pred cCCccEEEECCCC
Q 018246 245 MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ~~~~d~vid~~g~ 257 (359)
.+.+|.++.+.+.
T Consensus 90 ~~~id~vi~~Ag~ 102 (247)
T PRK08945 90 FGRLDGVLHNAGL 102 (247)
T ss_pred hCCCCEEEECCcc
Confidence 2478999998764
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.17 Score=45.19 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=50.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-------HHHH---HHHcCCc---EEecCCCHHHHHHh----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-------ESEA---ISKLGAD---AFLVSSDPAKVKAA---- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-------~~~~---~~~~g~~---~v~~~~~~~~~~~~---- 244 (359)
.+.++||.|+ |++|..+++.+...|++|++++++.+. ++.+ .+..+.+ ...|..+.+.+..+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 84 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA 84 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 4678999986 999999999998899999999987542 2211 1233432 12355555433332
Q ss_pred ---cCCccEEEECCCC
Q 018246 245 ---MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ---~~~~d~vid~~g~ 257 (359)
.+.+|++|+++|.
T Consensus 85 ~~~~g~id~li~~ag~ 100 (273)
T PRK08278 85 VERFGGIDICVNNASA 100 (273)
T ss_pred HHHhCCCCEEEECCCC
Confidence 2479999998874
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.082 Score=49.58 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=50.6
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
..+.+|||+|+ |.+|..++..+...|.+|+++++........ ..++... ..|..+.+.+..+..++|+||.+++
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-ccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 46789999986 9999999999999999999999754321111 1112222 2244444555555568999999874
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.26 Score=45.98 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=47.2
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
...++|....+...+- .++...+.--.|.+|.|-|.|.+|..+++.+...|++|++++.+..
T Consensus 180 ~~r~~aTg~Gv~~~~~-~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 180 LGRSEATGYGVFYAIR-EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcccceehHHHHH-HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 3445566666655554 5555555424899999999999999999999999999999987766
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.19 Score=44.82 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=58.4
Q ss_pred EEEEECCchHHHHHHHHHHHC--CCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF--GLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~--g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+|.|+|.|.+|...++..... +.+ +.+.++++++.+.+.++++... + .+. .++...+|+|++|++.....+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~-~--~~~---~ell~~~DvVvi~a~~~~~~~ 76 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKA-C--LSI---DELVEDVDLVVECASVNAVEE 76 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCee-E--CCH---HHHhcCCCEEEEcCChHHHHH
Confidence 588999999999888776654 455 5567788888777756666432 2 222 233367999999998766456
Q ss_pred HHHhccccCCEEEEe
Q 018246 263 PLLGLLKVNGKLVTV 277 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~ 277 (359)
.+...++.+-.++..
T Consensus 77 ~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 77 VVPKSLENGKDVIIM 91 (265)
T ss_pred HHHHHHHcCCCEEEE
Confidence 667777765555543
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.14 Score=44.96 Aligned_cols=73 Identities=23% Similarity=0.259 Sum_probs=50.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCccE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
++++|.|+ |.+|...++.+...|++|+++.+++++.+.+.+. .+.. ...|-.+.+.+.++ .+..|+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 36889886 9999999999999999999999987765544332 3322 12344555444332 236899
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.+.|.
T Consensus 81 vi~~ag~ 87 (254)
T TIGR02415 81 MVNNAGV 87 (254)
T ss_pred EEECCCc
Confidence 9998874
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.15 Score=42.53 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=55.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHH---HHHcCCcE--EecCCCHHHHHHhcCCccEEEECCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEA---ISKLGADA--FLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~---~~~~g~~~--v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
++++||-+|+|. |..++.+++.. +.+|++++.+++..+.+ .++.+.+. ++..+-.+ + ...+.+|+|+...-
T Consensus 42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~-~~~~~fD~I~s~~~ 118 (181)
T TIGR00138 42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-F-QHEEQFDVITSRAL 118 (181)
T ss_pred CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-c-cccCCccEEEehhh
Confidence 478899888643 44455555544 35999999998755443 23455432 22222111 1 11347999986431
Q ss_pred -C-hhhHHHHHhccccCCEEEEe
Q 018246 257 -A-VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 257 -~-~~~~~~~~~~l~~~G~~v~~ 277 (359)
. ...++.+.+.|+++|+++..
T Consensus 119 ~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 119 ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hCHHHHHHHHHHhcCCCCEEEEE
Confidence 1 22456778899999999876
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.14 Score=44.75 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=49.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHH---Hc-C--Cc-EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAIS---KL-G--AD-AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~---~~-g--~~-~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |.+|..+++.+...|++|++++++.+ +.+.+.+ +. + .. ...|..+.+.+..+ .+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4578999986 99999999988889999999998643 3333211 22 1 11 22355554443332 23
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
.+|++|.++|.
T Consensus 85 ~~d~vi~~ag~ 95 (249)
T PRK09135 85 RLDALVNNASS 95 (249)
T ss_pred CCCEEEECCCC
Confidence 68999999873
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.15 Score=44.64 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=48.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |.+|...+..+...|++|++++++. . +..+.. ...|..+.+.+.++ .+.+|++
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----L-TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL 80 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----h-hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4678999986 9999999999988999999999875 1 222321 12344444433332 2468999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
+.+.|.
T Consensus 81 i~~ag~ 86 (252)
T PRK08220 81 VNAAGI 86 (252)
T ss_pred EECCCc
Confidence 999875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 359 | ||||
| 1yqd_A | 366 | Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ | 1e-131 | ||
| 2cf5_A | 357 | Crystal Structures Of The Arabidopsis Cinnamyl Alco | 2e-78 | ||
| 1uuf_A | 369 | Crystal Structure Of A Zinc-Type Alcohol Dehydrogen | 3e-76 | ||
| 3two_A | 348 | The Crystal Structure Of Cad From Helicobacter Pylo | 3e-59 | ||
| 1ps0_A | 360 | Crystal Structure Of The Nadp(H)-Dependent Cinnamyl | 2e-41 | ||
| 3s1l_A | 340 | Crystal Structure Of Apo-Form Furx Length = 340 | 3e-37 | ||
| 1rjw_A | 339 | Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd | 5e-35 | ||
| 3pii_A | 339 | Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog | 6e-35 | ||
| 1llu_A | 342 | The Ternary Complex Of Pseudomonas Aeruginosa Alcoh | 8e-33 | ||
| 3meq_A | 365 | Crystal Structure Of Alcohol Dehydrogenase From Bru | 1e-32 | ||
| 2hcy_A | 347 | Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi | 4e-25 | ||
| 4eex_A | 348 | Crystal Structure Of Lactococcus Lactis Alcohol Deh | 1e-23 | ||
| 4eez_A | 348 | Crystal Structure Of Lactococcus Lactis Alcohol Deh | 3e-23 | ||
| 1h2b_A | 359 | Crystal Structure Of The Alcohol Dehydrogenase From | 1e-15 | ||
| 1e3j_A | 352 | Ketose Reductase (Sorbitol Dehydrogenase) From Silv | 8e-15 | ||
| 3i4c_A | 347 | Crystal Structure Of Sulfolobus Solfataricus Adh(Ss | 8e-12 | ||
| 4a2c_A | 346 | Crystal Structure Of Galactitol-1-Phosphate Dehydro | 1e-11 | ||
| 1agn_A | 373 | X-Ray Structure Of Human Sigma Alcohol Dehydrogenas | 1e-11 | ||
| 1d1t_A | 373 | Mutant Of Human Sigma Alcohol Dehydrogenase With Le | 1e-11 | ||
| 4ej6_A | 370 | Crystal Structure Of A Putative Zinc-Binding Dehydr | 1e-11 | ||
| 1r37_A | 347 | Alcohol Dehydrogenase From Sulfolobus Solfataricus | 3e-11 | ||
| 1nto_A | 347 | N249y Mutant Of Alcohol Dehydrogenase From The Arch | 4e-11 | ||
| 2eer_A | 347 | Structural Study Of Project Id St2577 From Sulfolob | 4e-11 | ||
| 1ht0_A | 374 | Human Gamma-2 Alcohol Dehydrogense Length = 374 | 5e-11 | ||
| 2xaa_A | 345 | Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube | 5e-11 | ||
| 1hdy_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 5e-11 | ||
| 1jvb_A | 347 | Alcohol Dehydrogenase From The Archaeon Sulfolobus | 1e-10 | ||
| 1cdo_A | 374 | Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co | 3e-10 | ||
| 1hso_A | 374 | Human Alpha Alcohol Dehydrogenase (Adh1a) Length = | 3e-10 | ||
| 4ilk_A | 359 | Crystal Structure Of Short Chain Alcohol Dehydrogen | 4e-10 | ||
| 1hdx_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 4e-10 | ||
| 1htb_A | 374 | Crystallization Of Human Beta3 Alcohol Dehydrogenas | 5e-10 | ||
| 2dfv_A | 347 | Hyperthermophilic Threonine Dehydrogenase From Pyro | 6e-10 | ||
| 2d8a_A | 348 | Crystal Structure Of Ph0655 From Pyrococcus Horikos | 6e-10 | ||
| 2h6e_A | 344 | Crystal Structure Of The D-Arabinose Dehydrogenase | 6e-10 | ||
| 1hdz_A | 374 | Three-Dimensional Structures Of Three Human Alcohol | 7e-10 | ||
| 3ip1_A | 404 | Structure Of Putative Alcohol Dehydrogenase (Tm_042 | 8e-10 | ||
| 2dq4_A | 343 | Crystal Structure Of Threonine 3-Dehydrogenase Leng | 9e-10 | ||
| 1axg_A | 374 | Crystal Structure Of The Val203->ala Mutant Of Live | 2e-09 | ||
| 1qlh_A | 374 | Horse Liver Alcohol Dehydrogenase Complexed To Nad | 2e-09 | ||
| 1ju9_A | 374 | Horse Liver Alcohol Dehydrogenase Val292ser Mutant | 2e-09 | ||
| 1n8k_A | 374 | Horse Liver Alcohol Dehydrogenase Val292thr Mutant | 2e-09 | ||
| 6adh_A | 374 | Structure Of Triclinic Ternary Complex Of Horse Liv | 2e-09 | ||
| 3oq6_A | 374 | Horse Liver Alcohol Dehydrogenase A317c Mutant Comp | 2e-09 | ||
| 1ee2_B | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 2e-09 | ||
| 1ee2_A | 373 | The Structure Of Steroid-Active Alcohol Dehydrogena | 2e-09 | ||
| 1axe_A | 374 | Crystal Structure Of The Active-Site Mutant Phe93-> | 3e-09 | ||
| 1a71_A | 374 | Ternary Complex Of An Active Site Double Mutant Of | 3e-09 | ||
| 1mgo_A | 374 | Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L | 3e-09 | ||
| 3gfb_A | 350 | L-Threonine Dehydrogenase (Tktdh) From The Hyperthe | 4e-09 | ||
| 1vj0_A | 380 | Crystal Structure Of Alcohol Dehydrogenase (Tm0436) | 1e-08 | ||
| 1qv6_A | 374 | Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG | 1e-08 | ||
| 1p0c_A | 373 | Crystal Structure Of The Nadp(H)-Dependent Vertebra | 1e-08 | ||
| 1e3l_A | 376 | P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase | 2e-08 | ||
| 1pl7_A | 356 | Human Sorbitol Dehydrogenase (Apo) Length = 356 | 7e-08 | ||
| 1f8f_A | 371 | Crystal Structure Of Benzyl Alcohol Dehydrogenase F | 7e-08 | ||
| 1mc5_A | 374 | Ternary Complex Of Human Glutathione-Dependent Form | 1e-07 | ||
| 3uko_A | 378 | Crystal Structure Of S-Nitrosoglutathione Reductase | 1e-07 | ||
| 1teh_A | 373 | Structure Of Human Liver Chichi Alcohol Dehydrogena | 1e-07 | ||
| 3qj5_A | 374 | S-Nitrosoglutathione Reductase (Gsnor) In Complex W | 1e-07 | ||
| 4dl9_A | 396 | Crystal Structure Of S-nitrosoglutathione Reductase | 2e-07 | ||
| 3cos_A | 381 | Crystal Structure Of Human Class Ii Alcohol Dehydro | 2e-07 | ||
| 3qe3_A | 355 | Sheep Liver Sorbitol Dehydrogenase Length = 355 | 2e-07 | ||
| 1e3e_A | 376 | Mouse Class Ii Alcohol Dehydrogenase Complex With N | 2e-07 | ||
| 1pl6_A | 356 | Human SdhNADHINHIBITOR COMPLEX Length = 356 | 3e-07 | ||
| 2fzw_A | 373 | Structure Of The Binary Complex Of The E67l Mutant | 8e-07 | ||
| 1kol_A | 398 | Crystal Structure Of Formaldehyde Dehydrogenase Len | 4e-06 | ||
| 2eih_A | 343 | Crystal Structure Of Nad-Dependent Alcohol Dehydrog | 5e-06 | ||
| 3uog_A | 363 | Crystal Structure Of Putative Alcohol Dehydrogenase | 5e-06 | ||
| 2dph_A | 398 | Crystal Structure Of Formaldehyde Dismutase Length | 1e-05 | ||
| 3fpl_A | 351 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 4e-05 | ||
| 1ykf_A | 352 | Nadp-Dependent Alcohol Dehydrogenase From Thermoana | 5e-05 | ||
| 2nvb_A | 352 | Contribution Of Pro275 To The Thermostability Of Th | 5e-05 | ||
| 1jqb_A | 351 | Alcohol Dehydrogenase From Clostridium Beijerinckii | 7e-05 | ||
| 3ftn_A | 352 | Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO | 7e-05 | ||
| 1ped_A | 351 | Bacterial Secondary Alcohol Dehydrogenase (Apo-Form | 8e-05 | ||
| 3fsr_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 8e-05 | ||
| 3fpc_A | 352 | Chimera Of Alcohol Dehydrogenase By Exchange Of The | 1e-04 | ||
| 2b83_A | 351 | A Single Amino Acid Substitution In The Clostridium | 2e-04 |
| >pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366 | Back alignment and structure |
|
| >pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol Dehydrogenases, Atcad5 Length = 357 | Back alignment and structure |
|
| >pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369 | Back alignment and structure |
|
| >pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348 | Back alignment and structure |
|
| >pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl Alcohol Dehydrogenase From Saccharomyces Cerevisiae Length = 360 | Back alignment and structure |
|
| >pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340 | Back alignment and structure |
|
| >pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339 | Back alignment and structure |
|
| >pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339 | Back alignment and structure |
|
| >pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342 | Back alignment and structure |
|
| >pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365 | Back alignment and structure |
|
| >pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347 | Back alignment and structure |
|
| >pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348 | Back alignment and structure |
|
| >pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348 | Back alignment and structure |
|
| >pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359 | Back alignment and structure |
|
| >pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352 | Back alignment and structure |
|
| >pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347 | Back alignment and structure |
|
| >pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346 | Back alignment and structure |
|
| >pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373 | Back alignment and structure |
|
| >pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373 | Back alignment and structure |
|
| >pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370 | Back alignment and structure |
|
| >pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347 | Back alignment and structure |
|
| >pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347 | Back alignment and structure |
|
| >pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347 | Back alignment and structure |
|
| >pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374 | Back alignment and structure |
|
| >pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345 | Back alignment and structure |
|
| >pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1JVB|A Chain A, Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus Length = 347 | Back alignment and structure |
|
| >pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374 | Back alignment and structure |
|
| >pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374 | Back alignment and structure |
|
| >pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359 | Back alignment and structure |
|
| >pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374 | Back alignment and structure |
|
| >pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347 | Back alignment and structure |
|
| >pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348 | Back alignment and structure |
|
| >pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344 | Back alignment and structure |
|
| >pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374 | Back alignment and structure |
|
| >pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From Thermotoga Maritima Length = 404 | Back alignment and structure |
|
| >pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374 | Back alignment and structure |
|
| >pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374 | Back alignment and structure |
|
| >pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374 | Back alignment and structure |
|
| >pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373 | Back alignment and structure |
|
| >pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374 | Back alignment and structure |
|
| >pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374 | Back alignment and structure |
|
| >pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350 | Back alignment and structure |
|
| >pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380 | Back alignment and structure |
|
| >pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374 | Back alignment and structure |
|
| >pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373 | Back alignment and structure |
|
| >pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356 | Back alignment and structure |
|
| >pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371 | Back alignment and structure |
|
| >pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374 | Back alignment and structure |
|
| >pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378 | Back alignment and structure |
|
| >pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373 | Back alignment and structure |
|
| >pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374 | Back alignment and structure |
|
| >pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396 | Back alignment and structure |
|
| >pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381 | Back alignment and structure |
|
| >pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355 | Back alignment and structure |
|
| >pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376 | Back alignment and structure |
|
| >pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356 | Back alignment and structure |
|
| >pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373 | Back alignment and structure |
|
| >pdb|1KOL|A Chain A, Crystal Structure Of Formaldehyde Dehydrogenase Length = 398 | Back alignment and structure |
|
| >pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343 | Back alignment and structure |
|
| >pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363 | Back alignment and structure |
|
| >pdb|2DPH|A Chain A, Crystal Structure Of Formaldehyde Dismutase Length = 398 | Back alignment and structure |
|
| >pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351 | Back alignment and structure |
|
| >pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352 | Back alignment and structure |
|
| >pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352 | Back alignment and structure |
|
| >pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351 | Back alignment and structure |
|
| >pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351 | Back alignment and structure |
|
| >pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352 | Back alignment and structure |
|
| >pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352 | Back alignment and structure |
|
| >pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366 | Back alignment and structure |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 242/357 (67%), Positives = 289/357 (80%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE 60
M+KSPE EHP KA GWAARD +G SPF+FSRR TG +DV K+L+CG+CHSDLH +N+
Sbjct: 5 MSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKND 64
Query: 61 WGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNM 120
WG + YP+VPGHEIVG VT+VG+ V K GDKVGVG LV +C CESC LENYCP M
Sbjct: 65 WGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKM 124
Query: 121 ILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM 180
ILTY SI DGT TYGGYS+ +V ++ Y++RFPDNMPLD GAPLLCAGITVYSP+KY+G+
Sbjct: 125 ILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGL 184
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240
EPGKH+G+ GLGGLGHVAVK KAFG KVTVISTSP K+ EA+ GAD+FLVS D +
Sbjct: 185 DEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQ 244
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300
++AA GT+D IIDTVSAVH L PL GLLK +GKL+ VG PEKPLE+P F+L+ R++V G
Sbjct: 245 MQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAG 304
Query: 301 SNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSK 357
S +GGMKETQEM+DF AKHNI ADIE++ D +NTAMERLAK+DV+YRFVIDVGN+
Sbjct: 305 SGIGGMKETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTL 361
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357 | Back alignment and structure |
|---|
Score = 632 bits (1632), Expect = 0.0
Identities = 176/351 (50%), Positives = 249/351 (70%)
Query: 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYP 67
E +K GWAARD +G SP+ ++ RETG +DV I+I+ CGICH+DLH +N+ G++NYP
Sbjct: 5 EAERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYP 64
Query: 68 IVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSI 127
+VPGHE+VG V +VG++VSKF GD VGVG LV C C C++ LE YCP I +YN +
Sbjct: 65 MVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDV 124
Query: 128 DRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHL 187
+G T GG++ VV Q +V++ P+ M ++ APLLCAG+TVYSP+ ++G+ +PG
Sbjct: 125 YINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRG 184
Query: 188 GVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT 247
G+ GLGG+GH+ VKI KA G VTVIS+S KK EA+ LGAD +++ SD AK+ +
Sbjct: 185 GILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADS 244
Query: 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMK 307
+DY+IDTV H+L P L LLK++GKL+ +G+ PL+ L+ R+++ GS +G MK
Sbjct: 245 LDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMK 304
Query: 308 ETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358
ET+EML+FC + +++ IE+V+MD +NTA ERL K+DV+YRFV+DV S L
Sbjct: 305 ETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSNL 355
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369 | Back alignment and structure |
|---|
Score = 602 bits (1555), Expect = 0.0
Identities = 171/355 (48%), Positives = 220/355 (61%), Gaps = 5/355 (1%)
Query: 2 AKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW 61
+ S + K A P +RRE G +DV I+I +CG+CHSDLH R+EW
Sbjct: 12 STSLYKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEW 71
Query: 62 GVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMI 121
T YP VPGHEIVG V VG+ V K+ GD VGVG +V SC+ CE C+ GLENYC +M
Sbjct: 72 AGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMT 131
Query: 122 LTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNM-PLDAGAPLLCAGITVYSPMKYYG 179
TYNS D T GGYS IVV + YVLR L A APLLCAGIT YSP++++
Sbjct: 132 GTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQ 191
Query: 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239
PGK +GV G+GGLGH+ +K+ A G V +TS K A LGAD + S +
Sbjct: 192 A-GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADEVVNSRNAD 249
Query: 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVP-IFALVGARRLV 298
++ A + + D+I++TV+A H+L LLK +G + VG P P + P +F L+ RR +
Sbjct: 250 EMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAI 309
Query: 299 GGSNVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353
GS +GG+ ETQEMLDFCA+H I ADIE++R DQIN A ER+ + DVKYRFVID
Sbjct: 310 AGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDN 364
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360 | Back alignment and structure |
|---|
Score = 600 bits (1550), Expect = 0.0
Identities = 118/353 (33%), Positives = 191/353 (54%), Gaps = 10/353 (2%)
Query: 8 EHPQKAIGWAARD--NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTN 65
+P+K G A + + + + D+ IKI CG+C SD+HCA WG
Sbjct: 2 SYPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMK 61
Query: 66 YPIVPGHEIVGTVTKVGNNV-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY 124
P+V GHEIVG V K+G S K G +VGVG V SC +C+ C+ E YC + TY
Sbjct: 62 MPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY 121
Query: 125 NSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPG 184
+ DG + GGY++ + V +H+V+ P+N+P APLLC G+TVYSP+ G PG
Sbjct: 122 SQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCG-PG 180
Query: 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK-VKA 243
K +G+ GLGG+G + I KA G + VIS S +K +A+ K+GAD ++ + + +
Sbjct: 181 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEK 239
Query: 244 AMGTMDYIIDTVSAVHSL--APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGS 301
T D I+ S++ + + +KV G++V++ +PE+ + + + S
Sbjct: 240 YFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYS 299
Query: 302 NVGGMKETQEMLDFCAKHNIAADIELVRMDQ--INTAMERLAKSDVKYRFVID 352
+G +KE ++L ++ +I +E + + + ++ A ER+ K DV+YRF +
Sbjct: 300 ALGSIKELNQLLKLVSEKDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLV 352
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348 | Back alignment and structure |
|---|
Score = 586 bits (1513), Expect = 0.0
Identities = 147/352 (41%), Positives = 202/352 (57%), Gaps = 12/352 (3%)
Query: 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIV 69
++ G+A F P FSR G DV I IL+ GICHSD+H A +EW YP++
Sbjct: 2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMI 61
Query: 70 PGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDR 129
PGHEI G + +VG V KFK GD VGVG V SC+ C+ C++ E +C ++ TY+ +D
Sbjct: 62 PGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDS 121
Query: 130 --DGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHL 187
D GGYS+ IVVD++YV+ N PL+ APLLCAGIT YSP+K+ +T G +
Sbjct: 122 FHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVT-KGTKV 180
Query: 188 GVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT 247
GVAG GGLG +AVK A G +V+V + + K+ +A+ +G F
Sbjct: 181 GVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SMGVKHFYTDPK-----QCKEE 234
Query: 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLE--VPIFALVGA-RRLVGGSNVG 304
+D+II T+ + L L LL NG L VGLP + + +F + R V GS +G
Sbjct: 235 LDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIG 294
Query: 305 GMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356
G+KETQEM+DF KHNI +I+L+ I+TA L K+R+VID+ S
Sbjct: 295 GIKETQEMVDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKS 346
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347 | Back alignment and structure |
|---|
Score = 471 bits (1214), Expect = e-168
Identities = 99/352 (28%), Positives = 158/352 (44%), Gaps = 17/352 (4%)
Query: 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPI 68
P+ G ++ G + A+++ I + + G+CH+DLH +W + P+
Sbjct: 3 PETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPL 62
Query: 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID 128
V GHE G V +G NV +K GD G+ L SC CE C+ G E+ CP+ L+
Sbjct: 63 VGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS----- 117
Query: 129 RDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLG 188
G G + D P L AP+LCAGITVY +K G +
Sbjct: 118 --GYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSAN-LMAGHWVA 174
Query: 189 VAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV-----K 242
++G GGLG +AV+ KA G +V I KE +G + F+ + + K
Sbjct: 175 ISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGEVFIDFTKEKDIVGAVLK 233
Query: 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGS 301
A G +I+ + ++ ++ NG V VG+P +F V + GS
Sbjct: 234 ATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGS 293
Query: 302 NVGGMKETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353
VG +T+E LDF A+ + + I++V + + E++ K + R+V+D
Sbjct: 294 YVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDT 345
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339 | Back alignment and structure |
|---|
Score = 467 bits (1203), Expect = e-166
Identities = 108/348 (31%), Positives = 169/348 (48%), Gaps = 15/348 (4%)
Query: 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVP 70
KA + +V ++I CG+CH+DLH A +W V P++P
Sbjct: 2 KAA--VVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIP 59
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
GHE VG V +VG V+ K GD+VG+ L ++C C+ C G E C +
Sbjct: 60 GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA------- 112
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190
G GGY++ YV++ PDN+ + AP+ CAG+T Y +K G +PG+ + +
Sbjct: 113 GYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY 171
Query: 191 GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT 247
G+GGLGHVAV+ KA GL V + +K A +LGAD + +K +G
Sbjct: 172 GIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADLVVNPLKEDAAKFMKEKVGG 230
Query: 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMK 307
+ + T + + ++ G V VGLP + + +PIF V + GS VG K
Sbjct: 231 VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRK 290
Query: 308 ETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGN 355
+ QE L F A+ + IE+ +++IN +R+ K + R V+ + +
Sbjct: 291 DLQEALQFAAEGKVKTIIEVQPLEKINEVFDRMLKGQINGRVVLTLED 338
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340 | Back alignment and structure |
|---|
Score = 460 bits (1186), Expect = e-164
Identities = 118/347 (34%), Positives = 177/347 (51%), Gaps = 15/347 (4%)
Query: 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIV 69
KA R + + G V +KI G+CH+DLH A +W V P +
Sbjct: 3 MKAA--VVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFI 60
Query: 70 PGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDR 129
PGHE VG V+ VG+ VS+ KEGD+VGV L ++C CE C QG E C T
Sbjct: 61 PGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT------ 114
Query: 130 DGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV 189
G GGY + +V D +YV PD + AP+LCAG+TVY +K T PG+ + +
Sbjct: 115 -GYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTD-TRPGQWVVI 172
Query: 190 AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMG 246
+G+GGLGHVAV+ +A GL+V + K + A +LGA+ + + D A ++ +G
Sbjct: 173 SGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RLGAEVAVNARDTDPAAWLQKEIG 231
Query: 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM 306
++ T + + + +G+++ G + GLP PIF +V + GS VG
Sbjct: 232 GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTR 291
Query: 307 KETQEMLDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353
+ QE LDF A ++ A + ++D +N RL + V+ R V+D
Sbjct: 292 SDLQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLDF 338
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344 | Back alignment and structure |
|---|
Score = 261 bits (670), Expect = 1e-85
Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 20/326 (6%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
++V I+I G+C +DL + PI+ GHE GT+ +VG ++K K+GD
Sbjct: 27 QGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGE-LAKVKKGDN 85
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V V C C++G N C N I+ G T GG+S+ ++V L
Sbjct: 86 VVVY-ATWGDLTCRYCREGKFNICKNQIIP-------GQTTNGGFSEYMLVKSSRWLVKL 137
Query: 154 DNMPLDAGAPLLCAGITVYSPMK---YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKV 210
+++ APL AG T ++ + + V G+GGL ++I KA +
Sbjct: 138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNI 197
Query: 211 TVI--STSPKKESEAISKLGADAFLVSSDPAK-VKAAMGTM--DYIIDTVSAVHSLAPLL 265
T++ S S K A +LGAD D + + ID V + L
Sbjct: 198 TIVGISRSKKHRDFA-LELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEETTYNLG 256
Query: 266 GLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI 325
LL G ++ VG+ K + + F + + GSN G + + ++++ I I
Sbjct: 257 KLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKIKPYI 316
Query: 326 ELVRMDQINTAMERLAKSDVKYRFVI 351
V +D IN A L + V R VI
Sbjct: 317 IKVPLDDINKAFTNLDEGRVDGRQVI 342
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359 | Back alignment and structure |
|---|
Score = 262 bits (671), Expect = 1e-85
Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 22/331 (6%)
Query: 33 RETGADDVTIKILFCGICHSDLHCARNEWGV---TNYPIVPGHEIVGTVTKVGNNVSKFK 89
R G DV ++I G+CH+DLH + W P GHE VG + +V V +
Sbjct: 37 RLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE 96
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
+GD V + + C +C+ G + +C N+ G GG+++ + V
Sbjct: 97 KGDPVILH-PAVTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSV 148
Query: 150 LRFPDNMPLDAG---APLLCAGITVYSPMKYYGM-TEPGKHLGVAGLGGLGHVAVKIGKA 205
++ P ++ + APL AGIT Y +K PG ++ + G+GGLGH+AV++ K
Sbjct: 149 IKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKV 208
Query: 206 FG-LKVTVISTSPKKESEAISKLGADAFLVSSD--PAKVKAAMGTM--DYIIDTVSAVHS 260
V + +K + +LGAD + + +V + +D V + +
Sbjct: 209 MTPATVIALDVKEEKL-KLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQAT 267
Query: 261 LAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320
+ LL G+L+ VG + L P ++ + GS VG E E++ +
Sbjct: 268 VDYTPYLLGRMGRLIIVGYGGE-LRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGK 326
Query: 321 IAADIELVRMDQINTAMERLAKSDVKYRFVI 351
+ ++++ ++D+IN +ERL K +V R V+
Sbjct: 327 VRVEVDIHKLDEINDVLERLEKGEVLGRAVL 357
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347 | Back alignment and structure |
|---|
Score = 252 bits (647), Expect = 4e-82
Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 26/332 (7%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV--------TNYPIVPGHEIVGTVTKVGNNVSK 87
V IK+ G+CHSD+H + +G P+ GHEI G + +VG+ V
Sbjct: 24 KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVG 83
Query: 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH 147
+ +GD V V C C+ G E+ C + G G Y++ ++V +
Sbjct: 84 YSKGDLVAVN-PWQGEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHY 135
Query: 148 YVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKA- 205
+ + APL C+GIT Y ++ +P K L V G GGLG +AV+I KA
Sbjct: 136 KYMYKLRRLNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194
Query: 206 FGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGTM--DYIIDTVSAVHS 260
G + + + EA + GAD + +S A+++ + D +ID ++ +
Sbjct: 195 SGATIIGVDVREEAV-EAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKT 253
Query: 261 LAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320
L+ L GK V VGL L + + GS VG + ++
Sbjct: 254 LSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGK 313
Query: 321 IAADI-ELVRMDQINTAMERLAKSDVKYRFVI 351
+ I + +++++ N A++ L R V+
Sbjct: 314 VKPMITKTMKLEEANEAIDNLENFKAIGRQVL 345
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 2e-80
Identities = 82/324 (25%), Positives = 135/324 (41%), Gaps = 12/324 (3%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV--TNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
G ++ +K+ G+CHSD+ P+ GHE VGTV ++G V+ F GD
Sbjct: 24 GPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGVGDA 83
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V V C C +C +G ENYC I G + G ++ ++VD L
Sbjct: 84 VAVY-GPWGCGACHACARGRENYCTRAADL--GITPPGLGSPGSMAEYMIVDSARHLVPI 140
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVT 211
++ A APL AG+T Y + + PG V G+GGLGHV ++I +A +V
Sbjct: 141 GDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVI 200
Query: 212 VISTSPKKESEAISKLGADAFLVSSD--PAKVKAAMGTM--DYIIDTVSAVHSLAPLLGL 267
+ + ++GADA + S ++ G + D V A ++ +
Sbjct: 201 AVDLDDDRL-ALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQV 259
Query: 268 LKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL 327
+ V+G + VG+ F ++ V G E E++ + E
Sbjct: 260 VAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWGTRSELMEVVALARAGRLDIHTET 319
Query: 328 VRMDQINTAMERLAKSDVKYRFVI 351
+D+ A RL + ++ R V+
Sbjct: 320 FTLDEGPAAYRRLREGSIRGRGVV 343
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-49
Identities = 85/334 (25%), Positives = 134/334 (40%), Gaps = 33/334 (9%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVS-----KFKE 90
+ ++IL G+C SD+H R E PI+ GHE G V +V K
Sbjct: 41 PRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGELLKP 100
Query: 91 GDKVGVGVLVASCQKCESCQQGLENY-CPNMILTYNSIDRDGTKTY---GGYSDLIVVD- 145
GD + V +C +C C+ E Y CPN + I+R ++ G YS IV+D
Sbjct: 101 GDLI-VWNRGITCGECYWCKVSKEPYLCPNRKVY--GINRGCSEYPHLRGCYSSHIVLDP 157
Query: 146 QHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205
+ VL+ + LD A +C+G T Y Y + GK + + G G LG V I ++
Sbjct: 158 ETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARS 217
Query: 206 FG-LKVTVISTSPKKESEAISKLGADAFLVSS-----DPAKVKAAMGTM----DYIIDTV 255
G V VI+ SP + A ++GAD L + K + T D+I++
Sbjct: 218 LGAENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMDI-THGRGADFILEAT 275
Query: 256 SAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI---FALVGARRLVGGSNVGGMKETQEM 312
+L LL+ G G+ VP LV G V +
Sbjct: 276 GDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKT 335
Query: 313 LDFCAKHNIAADIELV----RMDQINTAMERLAK 342
+ +++ +L+ + + N A+E +
Sbjct: 336 VSITSRNYQLLS-KLITHRLPLKEANKALELMES 368
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 5e-47
Identities = 63/338 (18%), Positives = 116/338 (34%), Gaps = 40/338 (11%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYP-----IVPGHEIVGTVTKVGNNVSKFKE 90
+ I+ ++ GIC +D + ++ P +V GHE +G V + + F +
Sbjct: 25 SYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEESYHG---FSQ 81
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD V + V C C +C G ++C I + G + D Y++
Sbjct: 82 GDLV-MPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHK----MDGFMREWWYDDPKYLV 136
Query: 151 RFPDNMPLDAGA---PLLCA---------GITVYSPMKYYGMTEPGKHLGVAGLGGLGHV 198
+ P ++ D G PL T + + V G G +G +
Sbjct: 137 KIPKSIE-DIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVL 195
Query: 199 AVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD--PAKVKAAMGTMDYIIDTV- 255
+ + +GL+V + + E E +S K+K ++G D IID
Sbjct: 196 FTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATG 255
Query: 256 SAVHSLAPLLGLLKVNGKLVTVGLPEKPL----EVPIFALVGARRLVGGSNVGGMKETQE 311
+ V+ L ++ LL NG L G + +V + + G G Q+
Sbjct: 256 ADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQ 315
Query: 312 MLDFCAKHNIAADIELVRM-------DQINTAMERLAK 342
+ A + + ++ L +
Sbjct: 316 AVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLRE 353
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 3e-46
Identities = 64/266 (24%), Positives = 111/266 (41%), Gaps = 26/266 (9%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
E G DD+ +K+ CGIC +D H E+ T P+ GHE G V + G+ V G +
Sbjct: 44 EPGPDDLLVKVEACGICGTDRHLLHGEFPST-PPVTLGHEFCGIVVEAGSAVRDIAPGAR 102
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
+ + SC +C CQ G N C N+ G GG+++ ++V + P
Sbjct: 103 ITGDPNI-SCGRCPQCQAGRVNLCRNLRAI-------GIHRDGGFAEYVLVPRKQAFEIP 154
Query: 154 DNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LK 209
+ GA PL C ++ + G + + G G +G + V++ + G
Sbjct: 155 LTLDPVHGAFCEPLACC---LHGVDL--SGIKAGSTVAILGGGVIGLLTVQLARLAGATT 209
Query: 210 VTVISTSPKKESEAISKLGADAFLVSSD---PAKVKAAMGTM----DYIIDTVSAVHSLA 262
V + + K A ++GA A + S + +G + D +I+ ++
Sbjct: 210 VILSTRQATKRRLA-EEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVK 268
Query: 263 PLLGLLKVNGKLVTVGLPEKPLEVPI 288
L K G +V +G+ + +V I
Sbjct: 269 QSTRLAKAGGTVVILGVLPQGEKVEI 294
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 7e-46
Identities = 78/328 (23%), Positives = 131/328 (39%), Gaps = 35/328 (10%)
Query: 34 ETGADDVTIKILFCGICHSDLHCAR-NEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
+ G +V IK+L IC +DLH NEW P + GHE+ G V ++G V +
Sbjct: 26 KPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEGIEV 85
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD V V + C KC +C++G + C N + G T G +++ VV +
Sbjct: 86 GDYVSVETHI-VCGKCYACRRGQYHVCQNTKIF-------GVDTDGVFAEYAVVPAQNIW 137
Query: 151 RFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG 207
+ P ++P + PL A TV + GK + + G G LG + + + KA G
Sbjct: 138 KNPKSIPPEYATLQEPLGNAVDTVLA------GPISGKSVLITGAGPLGLLGIAVAKASG 191
Query: 208 -LKVTVISTSPKKESEAISKLGADAFLVSSD---PAKVKAAMGTM--DYIIDTVSAVHSL 261
V V S + A K+GAD + + +V D ++ A +L
Sbjct: 192 AYPVIVSEPSDFRRELA-KKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKAL 250
Query: 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRL-VGGSNVGGMKET-QEMLDFCAKH 319
L + G++ +GL + + L+ + L + G + ET +
Sbjct: 251 EQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSG 310
Query: 320 NIAADIELV-----RMDQINTAMERLAK 342
+ D ++ D+ A E +
Sbjct: 311 KLNLD-PIITHKYKGFDKYEEAFELMRA 337
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-43
Identities = 67/327 (20%), Positives = 125/327 (38%), Gaps = 35/327 (10%)
Query: 34 ETGADDVTIKILFCGICHSDLHC-ARNEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E G ++ +++ IC +DLH + W P+V GHE G V VG V + +
Sbjct: 22 EPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQV 81
Query: 91 GDKVGV--GVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148
GD V + + C C +C+ G + C N + G GG+++ +VV
Sbjct: 82 GDHVSLESHI---VCHACPACRTGNYHVCLNTQIL-------GVDRDGGFAEYVVVPAEN 131
Query: 149 VLRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKA 205
P ++P + A P A TVY+ G GK + + G G +G +A + +A
Sbjct: 132 AWVNPKDLPFEVAAILEPFGNAVHTVYA-----GSGVSGKSVLITGAGPIGLMAAMVVRA 186
Query: 206 FG-LKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVKAAMGT-MDYIIDTVSAVHSL 261
G + V +P + + A + V+ G+ ++ +++ ++
Sbjct: 187 SGAGPILVSDPNPYRLAFA-RPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAI 245
Query: 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRL-VGGSNVGGMKET-QEMLDFCAKH 319
L L G+ +G+P P+ + + R + G + +T +
Sbjct: 246 HQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSG 305
Query: 320 NIAADIELV----RMDQINTAMERLAK 342
+ L+ + + A LA
Sbjct: 306 RVDLS-PLLTHRLPLSRYREAFGLLAS 331
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 2e-43
Identities = 71/331 (21%), Positives = 126/331 (38%), Gaps = 41/331 (12%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
D+V +KI G+C SDL YPI GHE G + VG+ V GD V
Sbjct: 24 HQDEVRVKIASSGLCGSDLPRIFKNGAHY-YPITLGHEFSGYIDAVGSGVDDLHPGDAVA 82
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
L+ C C C +G + C G++ GG+++ IVV + V P +
Sbjct: 83 CVPLL-PCFTCPECLKGFYSQCAKYDFI-------GSRRDGGFAEYIVVKRKNVFALPTD 134
Query: 156 MPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVT 211
MP++ GA P+ + K++ + G G +G +A++ A G VT
Sbjct: 135 MPIEDGAFIEPITVGLHAFHL-----AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVT 189
Query: 212 VISTSPKKESEAISKLGADAFLVSSD---PAKVKAAMGTM--DYIIDTVSAVHSLAPLLG 266
I S +K + A GA SS+ P I++T ++ +
Sbjct: 190 AIDISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVE 248
Query: 267 LLKVNGKLVTVGLPEKPLEVPIFA----------LVGARRLVGGSNVGGMKETQEMLDFC 316
+ + +L VG + L + ++G+ S+ +E +
Sbjct: 249 IAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWM--NYSSPWPGQEWETASRLL 306
Query: 317 AKHNIAADIELV----RMDQINTAMERLAKS 343
+ ++ + L+ + A+ +A++
Sbjct: 307 TERKLSLE-PLIAHRGSFESFAQAVRDIARN 336
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 5e-43
Identities = 70/328 (21%), Positives = 127/328 (38%), Gaps = 19/328 (5%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G +V +++ + H D+ + P V G + G V VG V F GD+V
Sbjct: 26 GPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFAPGDEV 85
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
V SC +CE C G +N CP + G +G Y++ +V+ + + P
Sbjct: 86 -VINPGLSCGRCERCLAGEDNLCPRYQIL-------GEHRHGTYAEYVVLPEANLAPKPK 137
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVI 213
N+ + A + +T + + PG + V A G+ A++I K FG +V
Sbjct: 138 NLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIAT 197
Query: 214 STSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAPLLGLL 268
+ S K LGAD + + P +V+ G D ++D A++ ++
Sbjct: 198 AGSEDK-LRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGALY-FEGVIKAT 255
Query: 269 KVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL 327
G++ G +P + + + GS + +L F + + +
Sbjct: 256 ANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGKLKPVVGQ 315
Query: 328 V-RMDQINTAMERLAKSDVKYRFVIDVG 354
V ++ L + V + V+ VG
Sbjct: 316 VLPLEAAAEGHRLLEERRVFGKVVLQVG 343
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 8e-43
Identities = 76/279 (27%), Positives = 123/279 (44%), Gaps = 38/279 (13%)
Query: 34 ETGADDVTIKILFCGICHSDLH---CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E D+V +++ + GIC SD+H R + P+V GHE GTV KVG NV K+
Sbjct: 25 EPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK 84
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-GGYSDLIVVDQHYV 149
GD+V V V C++C+ C++G N CP++ T G + V +
Sbjct: 85 GDRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFC-------ATPPDDGNLARYYVHAADFC 136
Query: 150 LRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMT----EPGKHLGVAGLGGLGHVAVKI 202
+ PDN+ L+ GA PL + + G + V G G +G V+V
Sbjct: 137 HKLPDNVSLEEGALLEPLSVG---------VHACRRAGVQLGTTVLVIGAGPIGLVSVLA 187
Query: 203 GKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP--------AKVKAAMGTM-DYIID 253
KA+G V + SP++ A GAD LV ++++A+G + + ID
Sbjct: 188 AKAYGAFVVCTARSPRRLEVA-KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID 246
Query: 254 TVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALV 292
+ + + + G L+ VG+ + + VP+
Sbjct: 247 CSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNAC 285
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 1e-39
Identities = 89/349 (25%), Positives = 133/349 (38%), Gaps = 36/349 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V IKI+ +CH+D + +P++ GH G V VG V+K K GD V
Sbjct: 30 KAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKLKAGDTV- 88
Query: 96 VGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTK--TYGG-----------YSDL 141
+ + + C +C+ C N C + + DGT T G +S+
Sbjct: 89 IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEY 148
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
VV V + PLD L C T Y EPG V GLGG+G +
Sbjct: 149 TVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 208
Query: 202 IGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDYIIDT 254
K G ++ + + K + A + GA + D +K + G +DY +
Sbjct: 209 GCKVAGASRIIGVDINKDKFARAK-EFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 267
Query: 255 VSAVHSLAPLLGLL-KVNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGGMKETQE 311
+ V + L K G V VG+ E+ F LV R G+ GG K +
Sbjct: 268 IGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWK-GTAFGGWKSVES 326
Query: 312 M---LDFCAKHNIAADIELV----RMDQINTAMERLAKSDVKYRFVIDV 353
+ + I D E V D+IN A E + R V+ +
Sbjct: 327 VPKLVSEYMSKKIKVD-EFVTHNLSFDEINKAFELMHSGKS-IRTVVKI 373
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 1e-39
Identities = 74/274 (27%), Positives = 117/274 (42%), Gaps = 29/274 (10%)
Query: 34 ETGADDVTIKILFCGICHSDLHC-ARNEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E G ++V +++ GIC SD+H G + P+V GHE GTV KVG++V K
Sbjct: 28 EPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKP 87
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-GGYSDLIVVDQHYV 149
GD+V + + E C+ G N P++ T G + +
Sbjct: 88 GDRVAIEPGAP-RENDEFCKMGRYNLSPSIFFC-------ATPPDDGNLCRFYKHNAAFC 139
Query: 150 LRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF 206
+ PDN+ + GA PL +++ + G G + V G G +G V + + KA
Sbjct: 140 YKLPDNVTFEEGALIEPLSVG---IHACRR--GGVTLGHKVLVCGAGPIGMVTLLVAKAM 194
Query: 207 G-LKVTVISTSPKKESEAISKLGADAFLVSSDP------AKVKAAMGTM-DYIIDTVSAV 258
G +V V S + S+A ++GAD L S KV+ +G + I+ A
Sbjct: 195 GAAQVVVTDLSATRLSKA-KEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAE 253
Query: 259 HSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALV 292
S+ + + G LV VGL + VP+
Sbjct: 254 ASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAA 287
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 3e-39
Identities = 70/348 (20%), Positives = 129/348 (37%), Gaps = 35/348 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
D+V +K++ G+CH+DL R++ P V GHE G + +G NV++ + GD V
Sbjct: 30 QGDEVLVKVVATGMCHTDLIV-RDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVGDHV- 87
Query: 96 VGVLV-ASCQKCESCQQGLENYCPNM-ILTYNSIDRDGTKTY---------------GGY 138
VL C KC C G YC ++ D +G +
Sbjct: 88 --VLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSF 145
Query: 139 SDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHV 198
+ + ++ ++ ++P++ PL C T P G G +G
Sbjct: 146 ATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLS 205
Query: 199 AVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIID 253
A+ K G + + + A +LGA + S V A G +++ ++
Sbjct: 206 ALLAAKVCGASIIIAVDIVESRLELAK-QLGATHVINSKTQDPVAAIKEITDGGVNFALE 264
Query: 254 TVSAVHSLAPLLGLLKVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGSNVGGMK-ETQ 310
+ + L + L + GK+ VG P + + L+ + + G G +
Sbjct: 265 STGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKF 324
Query: 311 --EMLDFCAKHNIAAD--IELVRMDQINTAMERLAKSDVKYRFVIDVG 354
E++ + D ++ D+IN A K + +I +
Sbjct: 325 IPELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGIT-LKPIIKIA 371
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-38
Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 24/280 (8%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E + + ++ L G+C +D G +V GHE VG V V N ++ +E
Sbjct: 22 EPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV--VDPNDTELEE 79
Query: 91 GDKVGVGVLV-ASCQKCESCQQGLENYCPNMI-LTYNSIDRDGTKTYGGYSDLIVVDQHY 148
GD V V + E ++ + P+ + + G S+ + Y
Sbjct: 80 GDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAH-----GYMSEFFTSPEKY 134
Query: 149 VLRFPDNMPLDAGA---PLLCAGITVY-SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGK 204
++R P + + G P+ + + V G G LG + + + K
Sbjct: 135 LVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLK 193
Query: 205 AFGL---KVTVISTSPKKES--EAISKLGADAFLVSSDP-AKVKAAMGTMDYIIDTVSAV 258
+ + + + + I +L A P V MD+I +
Sbjct: 194 VDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEATGFP 253
Query: 259 HSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLV 298
+ L NG +G+P + A R +V
Sbjct: 254 KHAIQSVQALAPNGVGALLGVP-SDWAFEVDAGAFHREMV 292
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 1e-38
Identities = 75/339 (22%), Positives = 127/339 (37%), Gaps = 36/339 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V I+++ +C +D++ + +P+V GHE G V VG V+ FK GDKV
Sbjct: 32 KACEVRIQVIATCVCPTDINATDPKK-KALFPVVLGHECAGIVESVGPGVTNFKPGDKV- 89
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDR-----DGTK--TYGG----------- 137
+ C++C+ C L N C + D T T G
Sbjct: 90 IPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSS 149
Query: 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
+S VV + + R D L+ + C + Y PG V GLG +G
Sbjct: 150 FSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGL 209
Query: 198 VAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDY 250
A+ K G ++ I + +K +A LGA L + K + G +DY
Sbjct: 210 SAIIGCKIAGASRIIAIDINGEKFPKA-KALGATDCLNPRELDKPVQDVITELTAGGVDY 268
Query: 251 IIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKET 309
+D +L + + G VG + +P ++ R + G+ GG K
Sbjct: 269 SLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSIN-GTFFGGWKSV 327
Query: 310 QE---MLDFCAKHNIAADI---ELVRMDQINTAMERLAK 342
++ D+ + + IN A++ + +
Sbjct: 328 DSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKE 366
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 8e-38
Identities = 66/316 (20%), Positives = 132/316 (41%), Gaps = 21/316 (6%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G D+ ++ L + + D G+ +P VP ++ G V VG +V++F+ GD+V
Sbjct: 52 GEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRV 111
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
+ G + G G S+ +V+ + + + P
Sbjct: 112 -ISTFAPGWLDGLRPGTGRTPAYETL----------GGAHPGVLSEYVVLPEGWFVAAPK 160
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS 214
++ + L CAG+T + + G G + V G GG+ ++I KA G +V V S
Sbjct: 161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTS 220
Query: 215 TSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAPLLGLLK 269
+S +K + LGAD + + +V A G D+I++ L L +
Sbjct: 221 SSREK-LDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAG-LGQSLKAVA 278
Query: 270 VNGKLVTVG-LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELV 328
+G++ +G L + P+ L+ +V G +VG + ++++ + + I++
Sbjct: 279 PDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLGLKPVIDMR 338
Query: 329 -RMDQINTAMERLAKS 343
+ ++ A+ L +
Sbjct: 339 YKFTEVPEALAHLDRG 354
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 8e-38
Identities = 82/338 (24%), Positives = 132/338 (39%), Gaps = 36/338 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V IK++ GIC SD H VT P++ GHE G V +G V+ + GDKV
Sbjct: 32 KAHEVRIKMVATGICRSDDHVVSGT-LVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKV- 89
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNS-IDRDGTK--TYGG-----------YSDL 141
+ + C KC C+ N+C L+ +DGT T G +S
Sbjct: 90 IPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQY 149
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
VVD+ V + PL+ + C T Y G V GLGG+G +
Sbjct: 150 TVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209
Query: 202 IGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDYIIDT 254
KA G ++ + + K ++A ++GA + D K + G +D+ +
Sbjct: 210 GCKAAGAARIIGVDINKDKFAKAK-EVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268
Query: 255 VSAVHSLAPLLGLLKVN-GKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGGMKETQE 311
+ + ++ L + G V VG+P + + L+ R G+ GG K
Sbjct: 269 IGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWK-GAIFGGFKSKDS 327
Query: 312 M---LDFCAKHNIAADIELV----RMDQINTAMERLAK 342
+ + A D L+ ++IN + L
Sbjct: 328 VPKLVADFMAKKFALD-PLITHVLPFEKINEGFDLLRS 364
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-37
Identities = 74/354 (20%), Positives = 132/354 (37%), Gaps = 59/354 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCAR-NEWG------VTNYPIVPGHEIVGTVTKVGNNVSKF 88
++ IK+ CGIC SD+H A+ +E G +T +P+ GHE G V + G
Sbjct: 54 KPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINR 113
Query: 89 KEGDKVGVGVLVA-----SCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIV 143
+ + +G V C C C +G N+C N+ G G +++ +
Sbjct: 114 RTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNEL-------GFNVDGAFAEYVK 166
Query: 144 VDQHYVLRFPD-------NMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLG 193
VD Y + + AG+ P A + + G PG ++ + G G
Sbjct: 167 VDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVA---YNAVIVRGGGIRPGDNVVILGGG 223
Query: 194 GLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSD---PAKVKAAMGTM- 248
+G AV I K G KV + S + + A +LGAD + + V +
Sbjct: 224 PIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELGADHVIDPTKENFVEAVLDYTNGLG 282
Query: 249 -DYIIDTVSAVHSLAPLLGLLKVNGK-----LVTVGLPEKPLEVPIFALVGARRLVGGSN 302
++ + P + + + + V + + + R + GS
Sbjct: 283 AKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ 342
Query: 303 VGGMKET-QEMLDFCAKHNIAADIEL-------VRMDQINTAMERLA--KSDVK 346
T ++ +A+ +++ V M++I ++RL KS VK
Sbjct: 343 GHSGHGTFPRVISL-----MASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLVK 391
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-36
Identities = 82/346 (23%), Positives = 137/346 (39%), Gaps = 33/346 (9%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A+++ IKI+ G+CH+DL+ +P+V GHE G V VG V++F+ G+KV
Sbjct: 32 HANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKV- 90
Query: 96 VGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTK--TYGG-----------YSDL 141
+ + ++ C +C CQ N C + T G +S
Sbjct: 91 IPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQY 150
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
VV+Q V + + PLD L C T + EPG V GLG +G AV
Sbjct: 151 TVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVM 210
Query: 202 IGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDYIIDT 254
+ G ++ + +P K +A GA F+ +D ++ + + G +D+ ++
Sbjct: 211 GCHSAGAKRIIAVDLNPDKFEKAK-VFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 269
Query: 255 VSAVHSLAPLLGLL-KVNGKLVTVGLP-EKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312
V V + L K G V VG + L+ R GS GG K +
Sbjct: 270 VGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWK-GSMFGGFKGKDGV 328
Query: 313 ---LDFCAKHNIAADI---ELVRMDQINTAMERLAKSDVKYRFVID 352
+ + D + ++ +N A++ + R V+
Sbjct: 329 PKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLS 373
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 5e-36
Identities = 94/339 (27%), Positives = 140/339 (41%), Gaps = 34/339 (10%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V IKIL GIC SD E + +P++ GHE VG V +G V+ K GDKV
Sbjct: 33 KAHEVRIKILASGICGSDSS-VLKEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKV- 90
Query: 96 VGVLVASCQKCESCQQGLENYC-PNMILTYNSIDRDGTK--TYGG-----------YSDL 141
+ + V C C +C+ N+C N + + D T T G +++
Sbjct: 91 IPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEY 150
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201
VV V + PL++ + C T Y PG V GLGG+G A+
Sbjct: 151 TVVADIAVAKIDPKAPLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIV 209
Query: 202 IGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAK----VKAAM--GTMDYIIDT 254
KA G ++ + T K +A +LGA L D K V G +DY ++
Sbjct: 210 GCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 268
Query: 255 VSAVHSL-APLLGLLKVNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGGMKETQ- 310
+ ++ L +G V +GL +P+ L+ R L GS GG K +
Sbjct: 269 AGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLK-GSVFGGFKGEEV 327
Query: 311 -EMLDFCAKHNIAADI---ELVRMDQINTAMERLAKSDV 345
++D K I + + +DQIN A E L+
Sbjct: 328 SRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG 366
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 1e-35
Identities = 54/276 (19%), Positives = 98/276 (35%), Gaps = 32/276 (11%)
Query: 34 ETGADDVTIKILFCGICHSDLH-CARNEWG--VTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E +VT+ + GIC SD+H G + V GHE G V V +V K
Sbjct: 37 ELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKV 96
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY-GGYSDLIVVDQHYV 149
GD+V + V C CE C G N C + T G + +
Sbjct: 97 GDRVAIEPQVI-CNACEPCLTGRYNGCERVDFL-------STPPVPGLLRRYVNHPAVWC 148
Query: 150 LRFPDNMPLDAGA---PLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF 206
+ + M + GA PL + + + G + + G G +G + + KA
Sbjct: 149 HKIGN-MSYENGAMLEPL---SVALAGLQR--AGVRLGDPVLICGAGPIGLITMLCAKAA 202
Query: 207 G-LKVTVISTSPKKESEAISKLGADAFLVSSDP-------AKVKAAMGTM--DYIIDTVS 256
G + + + A ++ + + K+ + G + ++
Sbjct: 203 GACPLVITDIDEGRLKFA-KEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTG 261
Query: 257 AVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALV 292
S+A + +K GK+ +G+ + +++P
Sbjct: 262 VESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRAS 297
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-32
Identities = 60/394 (15%), Positives = 113/394 (28%), Gaps = 58/394 (14%)
Query: 9 HPQKAIGWAARDNTGTFSPFHFSRRET---GADDVTIKILFCGICHSDLHCARNEWGVTN 65
+ A + + D+V + ++ I ++ + A E T
Sbjct: 31 RAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTF 90
Query: 66 Y------------------PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCE 107
+ V G + G V + G V ++K GD V V A + E
Sbjct: 91 HFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDH--VIVHPAHVDEQE 148
Query: 108 SCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167
G +GG ++ VV +L P ++ + A
Sbjct: 149 PATHGDGMLGTEQRAWG------FETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLC 202
Query: 168 GITVYSPM--KYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI 224
T Y + + G + + G GGLG A++ K G + +S +KE A+
Sbjct: 203 AGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKE-AAV 261
Query: 225 SKLGADAFLVSSDPAKVKAAMGTM----------------------DYIIDTVSAVHSLA 262
LG D + ++ D + + V
Sbjct: 262 RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-FG 320
Query: 263 PLLGLLKVNGKLVTVG-LPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321
+ + + G +VT G L + + GS+ +E Q +
Sbjct: 321 LSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAV 380
Query: 322 AADIELV-RMDQINTAMERLAKSDVKYRFVIDVG 354
+ V + + A + S + +
Sbjct: 381 VPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCM 414
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-29
Identities = 67/340 (19%), Positives = 124/340 (36%), Gaps = 57/340 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
DV +K+L I SD++ + +G+ P V G+E V V VG+NV+ K GD V
Sbjct: 53 RGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWV 112
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
+ A+ G + V + +++ P
Sbjct: 113 ----IPANAG------------------------------LGTWRTEAVFSEEALIQVPS 138
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKV-TV 212
++PL + A L T Y + + +PG + A G+G ++I A GL+ V
Sbjct: 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINV 198
Query: 213 ISTSPKKE--SEAISKLGADAFLVSSD---PAKVKAAMGTM--DYIIDTVSAVHSLAPLL 265
+ P + S+ + LGA+ + + P ++ V S LL
Sbjct: 199 VRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGG-KSSTELL 257
Query: 266 GLLKVNGKLVTVGLP-EKPLEVPIFALVGARRLVGGSNVGGMKETQ----------EMLD 314
L G +VT G ++P+ + L+ + G + K+ + D
Sbjct: 258 RQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCD 317
Query: 315 FCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353
+ + A V + +A+E K + + ++ +
Sbjct: 318 LIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM 357
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 58/364 (15%), Positives = 127/364 (34%), Gaps = 55/364 (15%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNY------------------PIVPGHEIVGT 77
G + + ++ + ++ +H + E T V G ++ G
Sbjct: 69 GPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGV 128
Query: 78 VTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGG 137
V + G V+ ++ GD+V VA C + + + M+ I T +GG
Sbjct: 129 VLRTGPGVNAWQAGDEV-----VAHCLSV--ELESSDGHNDTMLDPEQRIWGFET-NFGG 180
Query: 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPM--KYYGMTEPGKHLGVAGL-GG 194
+++ +V + ++ PD++ + A T Y + + + G ++ + G GG
Sbjct: 181 LAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGG 240
Query: 195 LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---------------- 238
LG A + A G + +SP+K E +GA+A + +
Sbjct: 241 LGSYATQFALAGGANPICVVSSPQKA-EICRAMGAEAIIDRNAEGYRFWKDENTQDPKEW 299
Query: 239 ----AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG-LPEKPLEVPIFAL 291
+++ G +D + + + + + G + T E L
Sbjct: 300 KRFGKRIRELTGGEDIDIVFEHPGRET-FGASVFVTRKGGTITTCASTSGYMHEYDNRYL 358
Query: 292 VGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIELV-RMDQINTAMERLAKSDVKYRFV 350
+ + + GS+ +E E AK I + V ++ A + ++ + +
Sbjct: 359 WMSLKRIIGSHFANYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVG 418
Query: 351 IDVG 354
+
Sbjct: 419 VLCL 422
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 56/319 (17%), Positives = 115/319 (36%), Gaps = 46/319 (14%)
Query: 12 KAIG-WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP 70
+ WA + T + + ADD+ ++ GI D + + VP
Sbjct: 3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVP 62
Query: 71 GHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD 130
G + G + KVG V G +V Y + + R
Sbjct: 63 GVDGAGVIVKVGAKVDSKMLGRRV--------------------AYHTS-------LKRH 95
Query: 131 GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190
G+ +++ V++ V+ PDN+ + A L C +T + + +T + + +
Sbjct: 96 GS-----FAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPLT-KQREVLIV 149
Query: 191 GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250
G G + ++ ++ G V ++S S + +K G + +P++V
Sbjct: 150 GFGAVNNLLTQMLNNAGYVVDLVSASLSQ--ALAAKRGVRH--LYREPSQVTQ---KYFA 202
Query: 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQ 310
I D V++ + A L+ LK NG ++ + P F + + +G + +
Sbjct: 203 IFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEI---ALGALHDFG 258
Query: 311 EMLDFCAKHNIAADI-ELV 328
+ D+ + L+
Sbjct: 259 DRQDWQILMQQGEALLTLI 277
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-24
Identities = 63/330 (19%), Positives = 123/330 (37%), Gaps = 53/330 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-----TNYPIVPGHEIVGTVTKVGNNVSKFKE 90
+ + IK+ + D V N P G++ G V ++G++V+
Sbjct: 32 RKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNI 91
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GDKV +G+ Y++ + ++
Sbjct: 92 GDKV-MGIA------------------------------GFPDHPCCYAEYVCASPDTII 120
Query: 151 RFPDNMPLD--AGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFG 207
+ + + A P AG+T + + G + + AG GG+GH+A+++ K G
Sbjct: 121 QKLEKLSFLQAASLPT--AGLTALQALNQAEVK-QGDVVLIHAGAGGVGHLAIQLAKQKG 177
Query: 208 LKVTVIST-SPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLG 266
TVI+T S + + LGA+ + + + A +D +ID V +
Sbjct: 178 T--TVITTASKRNH-AFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-DVGIQSID 233
Query: 267 LLKVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAAD 324
LK G +V+V + +EV A L+ N+ + +++ + + +
Sbjct: 234 CLKETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVS---EDKLRIE 290
Query: 325 IELV-RMDQINTAMERLAKSDVKYRFVIDV 353
I + ++ + TA E L V+ + V V
Sbjct: 291 ISRIFQLSEAVTAHELLETGHVRGKLVFKV 320
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 5e-24
Identities = 44/276 (15%), Positives = 89/276 (32%), Gaps = 45/276 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNV-SKFKEGDK 93
G V IK+ I SD+ + ++G G E VGT+ G+ +K G +
Sbjct: 48 GPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKR 107
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V L+ +G +++ V + +
Sbjct: 108 V----------------------AFATGLS----------NWGSWAEYAVAEAAACIPLL 135
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTV 212
D + + GA ++ +T + E K + AG L + + + K G + V
Sbjct: 136 DTVRDEDGAAMIVNPLTAIAMFDIVKQ-EGEKAFVMTAGASQLCKLIIGLAKEEGFRPIV 194
Query: 213 ISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAPLLGL 267
++ + +GA L P A ++ M +D V+ + +
Sbjct: 195 TVRRDEQI-ALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-PLASAIFNA 252
Query: 268 LKVNGKLVTVGL--PEKPLEVPIFALVGARRLVGGS 301
+ + + G P+ + L+ + + G
Sbjct: 253 MPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGF 288
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 1e-23
Identities = 48/248 (19%), Positives = 87/248 (35%), Gaps = 41/248 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
++ I++ CG+ DL + P+VPG E G V +G++V ++ GD+V
Sbjct: 29 QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRV 88
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
M Y +++++ +V + PD
Sbjct: 89 -------------------------MAFV----------NYNAWAEVVCTPVEFVYKIPD 113
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVI 213
+M A +T Y + G + V + GG+G ++ V
Sbjct: 114 DMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVT-VF 172
Query: 214 STSPKKESEAISKLGADAFLVSSD-PAKVKAAMGT-MDYIIDTVSAVHSLAPLLGLLKVN 271
T+ + EAI F ++D +VK +D ++D + + L LLK
Sbjct: 173 GTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPL 231
Query: 272 GKLVTVGL 279
G + G
Sbjct: 232 GTYILYGS 239
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 46/274 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
++V +++L I SDL + P +PG+E VG V VG VS+ G +V
Sbjct: 31 KDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSRELIGKRV 90
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
+ G + + + +V+ PD
Sbjct: 91 L-----------------------------------PLRGEGTWQEYVKTSADFVVPIPD 115
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVI 213
++ A + +T + + L V A +GH+ ++ + ++ +
Sbjct: 116 SIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAV 175
Query: 214 STSPKKESEAISKLGADAFLVSSD---PAKVKAAMGTM--DYIIDTVSAVHSLAPLLGLL 268
+ + K E + +LGA + +S V + D ID++ L L
Sbjct: 176 TRNNKHT-EELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG-PDGNELAFSL 233
Query: 269 KVNGKLVTVGLPEKPLEVPIFALVGARRL-VGGS 301
+ NG +T+GL +V +V ++
Sbjct: 234 RPNGHFLTIGLLSGI-QVNWAEIVTKAKVHANIF 266
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-23
Identities = 55/262 (20%), Positives = 84/262 (32%), Gaps = 45/262 (17%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P + G ++ GTV VG V F+ GD V LT
Sbjct: 64 PAILGMDLAGTVVAVGPEVDSFRVGDAV-------------------------FGLT--- 95
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD--AGAPLLCAGITVYSPMKYYGMTEPG 184
G ++ VD + P + + + PL IT + + + G
Sbjct: 96 --GGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPL--VFITAWEGLVDRAQVQDG 151
Query: 185 KHLGV-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL---VSSDPAK 240
+ + + G GG+GHVA++I A G +V + E + LGA D A
Sbjct: 152 QTVLIQGGGGGVGHVAIQIALARGARVFA-TARGSDL-EYVRDLGATPIDASREPEDYAA 209
Query: 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI----FALVGARR 296
A D + DT+ L +K G +V+ P+ G
Sbjct: 210 EHTAGQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSCLGWGTHKLAPLSFKQATYSGVFT 268
Query: 297 LVGGSNVGGMKETQEMLDFCAK 318
L G+ EML
Sbjct: 269 LHTLLANEGLAHFGEMLREADA 290
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 3e-23
Identities = 50/241 (20%), Positives = 83/241 (34%), Gaps = 44/241 (18%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P+ G ++ G V + G +V FK GD+V +
Sbjct: 95 PLTLGRDVSGVVMECGLDVKYFKPGDEV-WAAV--------------------------- 126
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYG----MTE 182
G S+ +VV + V P ++ A L +T +S + G
Sbjct: 127 ----PPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNC 182
Query: 183 PGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL--VSSDPA 239
GK + + GG+G A+++ KA+ VT S E + KLGAD + S
Sbjct: 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTA-VCSQDAS-ELVRKLGADDVIDYKSGSVE 240
Query: 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKV--NGKLVTVGLPEKPLEVPIFALVGARRL 297
+ ++ D+I+D V + LK VT+ P + G +
Sbjct: 241 EQLKSLKPFDFILDNVGG-STETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQT 299
Query: 298 V 298
Sbjct: 300 G 300
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 4e-23
Identities = 43/267 (16%), Positives = 76/267 (28%), Gaps = 51/267 (19%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
D V +++ I SD G + GTV VG++V+ + GD+V
Sbjct: 35 PRDQVYVRVEAVAINPSDTSMR---GQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRV- 90
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
+ T G +S V + P
Sbjct: 91 --------------------------YGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKG 124
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-------------AGLGGLGHVAVKI 202
+ + A L T MK G+ P G V +++
Sbjct: 125 LSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQM 184
Query: 203 GKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAM-GTMDYIIDTVSAV 258
+ G + + SP + GA+ P ++ + Y +D ++ V
Sbjct: 185 LRLSGYIP-IATCSPHNF-DLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV 242
Query: 259 HSLAPLLGLL-KVNGKLVTV-GLPEKP 283
S + + G V++ PE
Sbjct: 243 ESTTFCFAAIGRAGGHYVSLNPFPEHA 269
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 5e-23
Identities = 51/293 (17%), Positives = 97/293 (33%), Gaps = 72/293 (24%)
Query: 36 GADDVTIKILFCGICHSDLHCAR----------NEWGVTNYPIVPGHEIVGTVTKVGNNV 85
++V +K L + SD++ + +G T G+E + V KVG+NV
Sbjct: 32 APNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNV 91
Query: 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVD 145
S + GD V + + +G + + +
Sbjct: 92 SSLEAGDWV----IPSHVN------------------------------FGTWRTHALGN 117
Query: 146 QHYVLR-----------FPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV--AGL 192
++ P+ + ++ GA + +T Y + +Y PGK + G
Sbjct: 118 DDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGT 177
Query: 193 GGLGHVAVKIGKAFGLKV-TVISTSPKKES--EAISKLGADAFLVSSDP------AKVKA 243
+G A +IGK +VI P + ++ +LGA + +K
Sbjct: 178 SAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKE 237
Query: 244 AMGTM----DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFAL 291
+ ++ V S + L NG ++T G P+ +P
Sbjct: 238 WIKQSGGEAKLALNCVGG-KSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLY 289
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 9e-23
Identities = 53/254 (20%), Positives = 84/254 (33%), Gaps = 54/254 (21%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPI------VPGHEIVGTVTKVGNNVSKFK 89
G + V + + G+C D + Y + VPG E G V S K
Sbjct: 47 GPNVVVVDVKAAGVCFPDYLMTKG-----EYQLKMEPPFVPGIETAGVVRSAPE-GSGIK 100
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
GD+V GGY++ + V +
Sbjct: 101 PGDRVM-----------------------------------AFNFIGGYAERVAVAPSNI 125
Query: 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGL 208
L P + L+ T+Y G G+ + V GG+G A++I K G
Sbjct: 126 LPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA 185
Query: 209 KVTVISTSPKKESEAISKLGADAFLVSSD--PAKVKAAMGTM--DYIIDTVSAVHSLAPL 264
KV + E + +GAD L + V+ A G D ++D + +
Sbjct: 186 KVIAVVNRTAAT-EFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG-PAFDDA 243
Query: 265 LGLLKVNGKLVTVG 278
+ L G+L+ VG
Sbjct: 244 VRTLASEGRLLVVG 257
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 58/233 (24%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
P V G + +G V VGN V+ F +GD V Y S
Sbjct: 60 PRVLGFDAIGVVESVGNEVTMFNQGDIV--------------------YYSG-------S 92
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD--AGAPLLCAGITVY------SPMKYY 178
D++G+ ++ ++++ V + P N+ + PL GIT Y +
Sbjct: 93 PDQNGS-----NAEYQLINERLVAKAPKNISAEQAVSLPL--TGITAYETLFDVFGISRN 145
Query: 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA-ISKLGADAFL--V 234
GK L + G GG+G +A +I KA+GL VI+T+ + E+ K+GAD L
Sbjct: 146 RNENEGKTLLIINGAGGVGSIATQIAKAYGL--RVITTASRNETIEWTKKMGADIVLNHK 203
Query: 235 SSDPAKVKA-AMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEV 286
S + K + +DY+ T + ++ L+K G + T+ E ++
Sbjct: 204 ESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDL 256
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 59/279 (21%), Positives = 102/279 (36%), Gaps = 55/279 (19%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPI------VPGHEIVGTVTKVGNNVSKFK 89
G +V ++ G+ D+ + +YP + G E+ G + VG VS +
Sbjct: 54 GEGEVLVRAEAIGVNRPDIAQRQG-----SYPPPKDASPILGLELSGEIVGVGPGVSGYA 108
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
GDKV L G Y++ ++ +
Sbjct: 109 VGDKV-------------------------CGLANG----------GAYAEYCLLPAGQI 133
Query: 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGL 208
L FP A L TV++ + G+ + + G G+G A+++ +AFG
Sbjct: 134 LPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA 193
Query: 209 KVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT-MDYIIDTVSAVHSLAPL 264
+V + S K EA +LGA + A +KA G +D I+D + A +
Sbjct: 194 EVYATAGSTGK-CEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAY-FERN 251
Query: 265 LGLLKVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGS 301
+ L +G L + +V + ++ R V GS
Sbjct: 252 IASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGS 290
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-21
Identities = 58/273 (21%), Positives = 109/273 (39%), Gaps = 44/273 (16%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
V IK+ CG+ + + + P PG ++ G + VG+N S FK+GD+V
Sbjct: 56 KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
S GGY++ + H V + P+
Sbjct: 116 FTS-STIS---------------------------------GGYAEYALAADHTVYKLPE 141
Query: 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVI 213
+ GA + T Y + + + G+ + V GG+G A +I +A+GLK+
Sbjct: 142 KLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGT 201
Query: 214 STSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLAPLLGLL 268
+ + + + + + + GA + K+K +G +D II+ ++ V+ L+ L LL
Sbjct: 202 AGTEEGQ-KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLL 259
Query: 269 KVNGKLVTVGLPEKPLEVPIFALVGARRLVGGS 301
G+++ VG +E+ + + G
Sbjct: 260 SHGGRVIVVGSR-GTIEINPRDTMAKESSIIGV 291
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 1e-20
Identities = 58/281 (20%), Positives = 103/281 (36%), Gaps = 50/281 (17%)
Query: 12 KAIG---WAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPI 68
KA+G A + + + D+ +++ + D R+
Sbjct: 24 KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83
Query: 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID 128
V G++ G V+ VG +V+ F+ GD+V Y + I
Sbjct: 84 VIGYDAAGIVSAVGPDVTLFRPGDEV--------------------FYAGS-------II 116
Query: 129 RDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD--AGAPLLCAGITVY------SPMKYYGM 180
R GT ++ +VD+ V R P + A PL IT + +
Sbjct: 117 RPGT-----NAEFHLVDERIVGRKPKTLDWAEAAALPL--TSITAWEAFFDRLDVNKPVP 169
Query: 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA-ISKLGADAFL--VSSD 237
L V G GG+G +AV+I + +TVI+T+ + E++ + LGA +
Sbjct: 170 GAAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKSLGAHHVIDHSKPL 228
Query: 238 PAKVKA-AMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277
A+V A +G ++ T A + L+ G+ +
Sbjct: 229 AAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 7e-20
Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 56/276 (20%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPI------VPGHEIVGTVTKVGNNV-SKF 88
G +V +K+ + +DL + Y + G E G V ++G +
Sbjct: 48 GEGEVLLKVAASALNRADLMQRQG-----QYDPPPGASNILGLEASGHVAELGPGCQGHW 102
Query: 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148
K GD M L GG + + V +
Sbjct: 103 KIGDTA-------------------------MALLPG----------GGQAQYVTVPEGL 127
Query: 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFG 207
++ P+ + L A + A +T + + G + G ++ + AGL G+G A+++ + G
Sbjct: 128 LMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAG 187
Query: 208 LKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAAMGT--MDYIIDTVSAVHSLA 262
V + S KK + KLGA A ++ I+D + +
Sbjct: 188 AIPLVTAGSQKK-LQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSY-WE 245
Query: 263 PLLGLLKVNGKLVTVGLPE-KPLEVPIFALVGARRL 297
+ L ++G+ V GL + P+F+ + +R
Sbjct: 246 KNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRG 281
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 5e-19
Identities = 48/250 (19%), Positives = 85/250 (34%), Gaps = 44/250 (17%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
+++ ++ GI D + + + P G E G V+KVG+ V K GD+V
Sbjct: 27 AENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVV 86
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
Y G YS + + P
Sbjct: 87 --------------------YA--------------QSALGAYSSVHNIIADKAAILPAA 112
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVIS 214
+ + A G+TVY ++ +P + A GG+G +A + KA G +I
Sbjct: 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIG 170
Query: 215 TSPKKESEAISK-LGADAFLVSSD---PAKVKAAMGT--MDYIIDTVSAVHSLAPLLGLL 268
T + + GA + + ++K G + + D+V + L L
Sbjct: 171 TVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRD-TWERSLDCL 229
Query: 269 KVNGKLVTVG 278
+ G +V+ G
Sbjct: 230 QRRGLMVSFG 239
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 5e-19
Identities = 55/250 (22%), Positives = 93/250 (37%), Gaps = 44/250 (17%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
G V ++ G+ D + + P G E G V VG+ V++FK GD+V
Sbjct: 27 GPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVA 86
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
Y T G YS++ V+ + +++ D+
Sbjct: 87 --------------------YG--------------TGPLGAYSEVHVLPEANLVKLADS 112
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVIS 214
+ + A L+ G+TV ++ +PG+ + A GG+G +A + KA G +I
Sbjct: 113 VSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIG 170
Query: 215 TSPKKESEAISK-LGADAFLVSSD---PAKVKAAMGT--MDYIIDTVSAVHSLAPLLGLL 268
T E A +K LGA + S +V + D V + L +
Sbjct: 171 TVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ-DTWLTSLDSV 229
Query: 269 KVNGKLVTVG 278
G +V+ G
Sbjct: 230 APRGLVVSFG 239
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 2e-18
Identities = 56/275 (20%), Positives = 98/275 (35%), Gaps = 65/275 (23%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPI------VPGHEIVGTVTKVGNNVSKFK 89
+V +++ G+ +D Y +PG E+VG V
Sbjct: 24 EEGEVVLRVEAVGLNFADHLMRLG-----AYLTRLHPPFIPGMEVVGVV----------- 67
Query: 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149
EG + A GG ++ + V + +
Sbjct: 68 EGRRY-----AALVP------------------------------QGGLAERVAVPKGAL 92
Query: 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGL 208
L P+ + + A + +T Y +K PG+ + V A G LG AV++ +A GL
Sbjct: 93 LPLPEGLSPEEAAAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGL 151
Query: 209 KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLL 268
+V ++ P+K LGA+ ++ + A G +D +++ + LGLL
Sbjct: 152 RVLAAASRPEKL-ALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKE--VEESLGLL 208
Query: 269 KVNGKLVTVGLP--EKPLEVPIFALVGARRLVGGS 301
G+LV +G E +P L+ V G
Sbjct: 209 AHGGRLVYIGAAEGEVA-PIPPLRLMRRNLAVLGF 242
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 3e-18
Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 49/255 (19%)
Query: 36 GADDVTIKILFCGICHSDLHC---ARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
G V ++ G+ D + + V PIV G E V +VG V+ F G+
Sbjct: 27 GPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGE 86
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
+V C G YS + +++
Sbjct: 87 RVC--------------------TC--------------LPPLGAYSQERLYPAEKLIKV 112
Query: 153 PDNMPLD--AGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLK 209
P ++ LD A L+ G+T + +PG ++ + A GG+GH+ V + G
Sbjct: 113 PKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLG-- 170
Query: 210 VTVISTSPKKESEAISK-LGADAFLVSSD---PAKVKAAMGT--MDYIIDTVSAVHSLAP 263
TVI T +E ++ LG + S V+ G +D + D++ +L
Sbjct: 171 ATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKD-TLQK 229
Query: 264 LLGLLKVNGKLVTVG 278
L L+ G G
Sbjct: 230 SLDCLRPRGMCAAYG 244
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 6e-18
Identities = 56/293 (19%), Positives = 102/293 (34%), Gaps = 45/293 (15%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
G D ++ L C SD+H + ++ GHE VG V +VG+ V FK GD+V
Sbjct: 23 GPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHEAVGEVVEVGSEVKDFKPGDRVV 82
Query: 96 VGVLVASCQKCESCQQGLENYCPNMI---LTYNSIDRDGTKTYGGYSDLIVVD--QHYVL 150
V + + Q+G + M+ N D G + + V+ +
Sbjct: 83 VPA-ITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD-------GVFGEFFHVNDADMNLA 134
Query: 151 RFPDNMPLDAGAPL-----------LCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVA 199
P +PL+A + A I + G + V G+G +G ++
Sbjct: 135 HLPKEIPLEAAVMIPDMMTTGFHGAELANI------------KLGDTVCVIGIGPVGLMS 182
Query: 200 VKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDYII 252
V G ++ + + A + GA + + V+ + G D ++
Sbjct: 183 VAGANHLGAGRIFAVGSRKHCCDIA-LEYGATDIINYKNGDIVEQILKATDGKGV-DKVV 240
Query: 253 DTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG 305
VH+ A + ++K + V + + I + GG
Sbjct: 241 IAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGG 293
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 50/201 (24%), Positives = 72/201 (35%), Gaps = 27/201 (13%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ V +K++ IC SD H R +V GHEI G V + G +V + GD
Sbjct: 30 KKIEHGVILKVVSTNICGSDQHMVRGRTTAQV-GLVLGHEITGEVIEKGRDVENLQIGDL 88
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVD--Q-HYV- 149
V +C +C SC++ C + + GY D+ Q YV
Sbjct: 89 V-SVPFNVACGRCRSCKEMHTGVCLTV-------NPARAGGAYGYVDMGDWTGGQAEYVL 140
Query: 150 --------LRFPDNMPLDAGAP--LLCAGI--TVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
L+ PD + I T Y G+ PG + VAG G +G
Sbjct: 141 VPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGV-GPGSTVYVAGAGPVGL 199
Query: 198 VAVKIGKAFG-LKVTVISTSP 217
A + G V V +P
Sbjct: 200 AAAASARLLGAAVVIVGDLNP 220
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-15
Identities = 51/276 (18%), Positives = 88/276 (31%), Gaps = 52/276 (18%)
Query: 16 WAARDNTGTFSPFHFSRRET-----GADDVTIKILFCGICHSDLHCARNEWGV-TNYPIV 69
+ F R+ G D+ ++ F G+ SD++ + + P
Sbjct: 27 LVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFD 86
Query: 70 PGHEIVGTVTKVGNNVS-KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID 128
G E +G V +G + S ++ G V
Sbjct: 87 IGFEGIGEVVALGLSASARYTVGQAVA--------------------------------- 113
Query: 129 RDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLG 188
G +++ VV P P LL +G T Y +K G GK +
Sbjct: 114 ---YMAPGSFAEYTVVPASIATPVPSVKP--EYLTLLVSGTTAYISLKELGGLSEGKKVL 168
Query: 189 V-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKAA 244
V A GG G A+++ K V +S +K + LG D + +K
Sbjct: 169 VTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKS-AFLKSLGCDRPINYKTEPVGTVLKQE 227
Query: 245 MGT-MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGL 279
+D + ++V + L G+L+ +G
Sbjct: 228 YPEGVDVVYESVGGAM-FDLAVDALATKGRLIVIGF 262
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 7e-15
Identities = 37/255 (14%), Positives = 68/255 (26%), Gaps = 72/255 (28%)
Query: 36 GADDVTIKILFCGICHSDLH-----------------------------CARNEWGVTNY 66
G D+V I+I + SDL R+ G +
Sbjct: 31 GPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDA 90
Query: 67 PIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNS 126
+ G+E G V + G++ + K +
Sbjct: 91 SMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI---------------------------- 122
Query: 127 IDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186
YS + L P+ GA +T ++ + E
Sbjct: 123 -------GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRL-EGHSA 174
Query: 187 LGV-AGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVK 242
L A LG + +I G+K+ I ++ + + GA ++ P +
Sbjct: 175 LVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQA-DLLKAQGAVHVCNAASPTFMQDLT 233
Query: 243 AAMGT--MDYIIDTV 255
A+ + D
Sbjct: 234 EALVSTGATIAFDAT 248
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 60/329 (18%), Positives = 113/329 (34%), Gaps = 48/329 (14%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
DVT+ + + + + D + + ++P++PG + GTV + +F G +V
Sbjct: 29 DVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTV--HASEDPRFHAGQEV--- 83
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
+LT + G +GG ++ V +++ P +
Sbjct: 84 -----------------------LLTGWGV---GENHWGGLAERARVKGDWLVALPAGLS 117
Query: 158 LDAGAPLLCAGIT----VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVI 213
+ AG T V + + G+ + GG+G AV + G +V +
Sbjct: 118 SRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAV 177
Query: 214 STSPKKESEAISKLGADAFLVSSDPAKVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNG 272
+ + + LGA+ L + A+ + IDTV LA +L + G
Sbjct: 178 -SGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD-KVLAKVLAQMNYGG 235
Query: 273 KLVTVGL---PEKPLEVPIFALVGARRLVGGSNVG-GMKETQEMLDFCAKH----NIAAD 324
+ GL P V F L RL G +V E K A
Sbjct: 236 CVAACGLAGGFALPTTVMPFILRNV-RLQGVDSVMTPPARRAEAWARLVKDLPESFYAQA 294
Query: 325 IELVRMDQINTAMERLAKSDVKYRFVIDV 353
+ + + + + V+ R ++ +
Sbjct: 295 ATEITLADAPKFADAIINNQVQGRTLVKI 323
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 7e-14
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGV 98
V +K++ IC SD H R + V V GHEI G V + G++V GD V
Sbjct: 34 AVILKVVSTNICGSDQHIYRGRFIVPK-GHVLGHEITGEVVEKGSDVELMDIGDLV-SVP 91
Query: 99 LVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQ-HYV-------- 149
+C +C +C++ + C N ++ ++ G+S Q YV
Sbjct: 92 FNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGG----QAEYVLVPYADYM 147
Query: 150 -LRFPDNMPLDAGAP--LLCAGI--TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGK 204
L+F D L + I T + G+ +PG H+ +AG G +G A +
Sbjct: 148 LLKFGDKEQAMEKIKDLTLISDILPTGFHGCVSAGV-KPGSHVYIAGAGPVGRCAAAGAR 206
Query: 205 AFG 207
G
Sbjct: 207 LLG 209
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 9e-14
Identities = 52/253 (20%), Positives = 89/253 (35%), Gaps = 49/253 (19%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
+++ IK + G+ + + + + + P V G E GTV G V+ F+ GD+V
Sbjct: 34 SEEELLIKNKYTGVNYIESYFRKGIYPCE-KPYVLGREASGTVVAKGKGVTNFEVGDQVA 92
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155
Y T+ YS + Q V++ P
Sbjct: 93 --------------------YI-------------SNSTFAQYS--KISSQGPVMKLPKG 117
Query: 156 MP---LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVT 211
L A L +T S + G ++ + A GG+G + ++ K G
Sbjct: 118 TSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKG--AH 175
Query: 212 VISTSPKKESEAISK-LGADAFLVSSD---PAKVKAAMGT--MDYIIDTVSAVHSLAPLL 265
I+ + E I+K GA+ + +S +V +D D+V + L
Sbjct: 176 TIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK-DTFEISL 234
Query: 266 GLLKVNGKLVTVG 278
LK G V+ G
Sbjct: 235 AALKRKGVFVSFG 247
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 41/249 (16%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
V IK+ + GI + D + + YP++ G + GTV V +N +F EGD+V
Sbjct: 33 GVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTV--VSSNDPRFAEGDEV--- 87
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
I T + G GG S+ V +++ P N+
Sbjct: 88 -----------------------IATSYEL---GVSRDGGLSEYASVPGDWLVPLPQNLS 121
Query: 158 LDAGAPLLCAGITV---YSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVI 213
L AG T ++ G++ + V G GG+G +AV + G V
Sbjct: 122 LKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVA- 180
Query: 214 STSPKKESEAISKLGADAFLVSSD--PAKVKA-AMGTMDYIIDTVSAVHSLAPLLGLLKV 270
ST ++ ++ + +LGA + D +KA + +D V LA LL ++
Sbjct: 181 STGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-KQLASLLSKIQY 239
Query: 271 NGKLVTVGL 279
G + GL
Sbjct: 240 GGSVAVSGL 248
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 68/331 (20%), Positives = 128/331 (38%), Gaps = 49/331 (14%)
Query: 39 DVTIKILFCGICHSDLHCARNEWGVT-NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVG 97
DV +++ + + + D + + + YP VPG ++ G V V + +F+EGD+V
Sbjct: 32 DVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVV--VSSQHPRFREGDEV--- 86
Query: 98 VLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMP 157
I T I G +GGYS+ + +++ P +
Sbjct: 87 -----------------------IATGYEI---GVTHFGGYSEYARLHGEWLVPLPKGLT 120
Query: 158 LDA----GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVI 213
L G A ++++ ++ E G L GG+G +AV + G V
Sbjct: 121 LKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEAS 180
Query: 214 STSPKKESEAISKLGADAFLVSSDPAKVKA---AMGTMDYIIDTVSAVHSLAPLLGLLKV 270
T E + + LGA L D + +D V +LA +L ++
Sbjct: 181 -TGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-RTLATVLSRMRY 238
Query: 271 NGKLVTVGL---PEKPLEVPIFALVGARRLVGGSNVG-GMKETQEMLDFCAKH---NIAA 323
G + GL E P V F L G L+G +V M + + A ++
Sbjct: 239 GGAVAVSGLTGGAEVPTTVHPFILRGV-SLLGIDSVYCPMDLRLRIWERLAGDLKPDLER 297
Query: 324 DIELVRMDQINTAMERLAKSDVKYRFVIDVG 354
+ + + ++ A++R+ + +++ R V+ +
Sbjct: 298 IAQEISLAELPQALKRILRGELRGRTVVRLA 328
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 50/298 (16%), Positives = 88/298 (29%), Gaps = 72/298 (24%)
Query: 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHF-----SRRETGADDVTIKILFCGICHSDLH 55
+ P G+ + G +V I + G+ D
Sbjct: 197 LGSDDVLPVPDGTGWRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDAL 256
Query: 56 CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLEN 115
A G+ G E G V + G V+ GD+V
Sbjct: 257 IAL---GMYPGVASLGSEGAGVVVETGPGVTGLAPGDRV--------------------- 292
Query: 116 YCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPM 175
M + + L V D V R P A + +T
Sbjct: 293 ----MGM-----------IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTA---- 333
Query: 176 KYYGMTEPGK---------HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK 226
YY + + H + GG+G A+++ + G +V ++ K ++ +
Sbjct: 334 -YYALVDLAGLRPGESLLVH---SAAGGVGMAAIQLARHLGAEVYATASEDKWQA---VE 386
Query: 227 LGADAFLVSSDPAKVKAAMG-TMDYIIDTVSAVHSLA-----PLLGLLKVNGKLVTVG 278
L + S + +G T +D V ++SLA L +L G+ + +G
Sbjct: 387 LSREHLASSRTCDFEQQFLGATGGRGVDVV--LNSLAGEFADASLRMLPRGGRFLELG 442
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 4e-06
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV 234
+++ T G ++ V GLG +G + A G KV V + + +G + F
Sbjct: 146 IQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE-MGMEPF-- 202
Query: 235 SSDPAKVKAAMGTMDYIIDTV 255
+K + +D I+T+
Sbjct: 203 --HISKAAQELRDVDVCINTI 221
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 10/152 (6%)
Query: 136 GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV-AGLGG 194
G + +++ QH P L+ A + T Y + G +PG+ + + +G GG
Sbjct: 1620 EGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGG 1679
Query: 195 LGHVAVKIGKAFGLKVTVISTSPKKES---EAISKLGADAFLVSSDPA---KVKAAMGT- 247
+G A+ I + G +V S +K + +L F S D + V
Sbjct: 1680 VGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGK 1739
Query: 248 -MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278
+D ++++++ A + L +G+ + +G
Sbjct: 1740 GVDLVLNSLAEEKLQA-SVRCLAQHGRFLEIG 1770
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 28/107 (26%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKA 243
G+ L + G G +G GK FG+KV +S S ++ + A
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPAL---------NK 190
Query: 244 AMGTMDYIIDTVSAVHSLAPL------------LGLLKVNGKLVTVG 278
+ D I+ S+ P K L VG
Sbjct: 191 MLAQADVIV-------SVLPATRETHHLFTASRFEHCKPGAILFNVG 230
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 28/107 (26%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKA 243
+G+ G G LG + +A+G + S S K S +G + +A
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREEL---------RA 189
Query: 244 AMGTMDYIIDTVSAVHSLAPL------------LGLLKVNGKLVTVG 278
+ +I +L P L L ++ +
Sbjct: 190 FLNQTRVLI-------NLLPNTAQTVGIINSELLDQLPDGAYVLNLA 229
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223
G+ L + G G +G A G+ V ++T+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF 176
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 100.0 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 100.0 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 100.0 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 100.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 100.0 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 100.0 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 100.0 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 100.0 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 100.0 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 100.0 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 100.0 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 100.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 100.0 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 100.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 100.0 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 100.0 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 100.0 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 100.0 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 100.0 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 100.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 100.0 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 100.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 100.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 100.0 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 100.0 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 100.0 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 100.0 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 100.0 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 100.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 100.0 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 100.0 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 100.0 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 100.0 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 100.0 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 100.0 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 100.0 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 100.0 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 100.0 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 100.0 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 100.0 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 100.0 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 100.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 100.0 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 100.0 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 100.0 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 100.0 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 100.0 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 100.0 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 100.0 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 100.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 100.0 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 100.0 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 100.0 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 100.0 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 100.0 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 100.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 100.0 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 100.0 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 100.0 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 100.0 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 100.0 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 100.0 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 100.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 100.0 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 100.0 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 100.0 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 100.0 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 99.87 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.16 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.05 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.04 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 99.03 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.02 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.01 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.82 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.73 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.65 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.57 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.54 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.38 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.3 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.24 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.23 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 98.21 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.2 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.13 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.11 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.09 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.04 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.01 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.01 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.97 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.92 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 97.88 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.86 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.76 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.75 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 97.73 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 97.72 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.72 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.72 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.69 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 97.68 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 97.68 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 97.67 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 97.66 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 97.65 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 97.64 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 97.63 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.63 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.63 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 97.61 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.6 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 97.6 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 97.6 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.59 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 97.57 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 97.56 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.56 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.55 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 97.55 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.55 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 97.5 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 97.5 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.49 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 97.49 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.47 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 97.47 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.47 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 97.46 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 97.45 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 97.45 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 97.45 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 97.44 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.44 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 97.44 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 97.43 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 97.43 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 97.43 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 97.42 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 97.42 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 97.41 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 97.41 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 97.4 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 97.4 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 97.4 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 97.39 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 97.39 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.39 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 97.38 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.38 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 97.37 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 97.36 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.36 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 97.36 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 97.36 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 97.36 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.34 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.34 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 97.34 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 97.34 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.33 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 97.33 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 97.33 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 97.33 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 97.32 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 97.32 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 97.32 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.32 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.31 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.31 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 97.31 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 97.31 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 97.3 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 97.3 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 97.3 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 97.3 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 97.29 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 97.29 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 97.29 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 97.29 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 97.28 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 97.28 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 97.28 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 97.27 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 97.27 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 97.27 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 97.26 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.25 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.25 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 97.24 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 97.24 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 97.24 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.24 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.23 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.23 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.22 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.22 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.22 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 97.22 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.22 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 97.22 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 97.22 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.21 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 97.21 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.21 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 97.21 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 97.21 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 97.21 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 97.21 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 97.2 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 97.2 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 97.2 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 97.2 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 97.2 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 97.19 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.19 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.19 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.19 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.19 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.18 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 97.18 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.17 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.17 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 97.17 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 97.17 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.17 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 97.16 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 97.16 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.16 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.16 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 97.15 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 97.15 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 97.14 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 97.14 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 97.13 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.12 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 97.12 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 97.12 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.11 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 97.11 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 97.1 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 97.1 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 97.1 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.1 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 97.1 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 97.1 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.09 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.09 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.09 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 97.09 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 97.08 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 97.08 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.08 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 97.07 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 97.07 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 97.06 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 97.06 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 97.06 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 97.05 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 97.05 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.05 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.05 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 97.05 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 97.05 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 97.04 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.03 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 97.03 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 97.03 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.03 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 97.03 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 97.03 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.02 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 97.02 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.02 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 97.02 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 97.02 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 97.02 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 97.02 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.01 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.01 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 97.01 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 97.01 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 97.0 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.0 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 96.99 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.99 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.98 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 96.98 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 96.98 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 96.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.96 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 96.96 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 96.96 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 96.95 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 96.94 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 96.94 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 96.94 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.93 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 96.93 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 96.93 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 96.93 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.93 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 96.92 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.92 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 96.92 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 96.92 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 96.92 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 96.91 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.91 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.91 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.91 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 96.91 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 96.9 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 96.89 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.89 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 96.88 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.88 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.88 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 96.87 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.87 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 96.86 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.85 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.84 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 96.84 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.84 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 96.84 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.83 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 96.83 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 96.83 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.82 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.81 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 96.81 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.81 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.8 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 96.8 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 96.8 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.8 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 96.8 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.8 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 96.79 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 96.79 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 96.78 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 96.78 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 96.77 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 96.77 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.76 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.76 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 96.75 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 96.75 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 96.75 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.75 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.75 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.73 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 96.73 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 96.73 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 96.72 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 96.72 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.72 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 96.71 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 96.7 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 96.7 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 96.69 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 96.68 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 96.67 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 96.67 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 96.66 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 96.66 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.65 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.64 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.64 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.64 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 96.64 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.62 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 96.62 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 96.62 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 96.62 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.61 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 96.61 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 96.61 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 96.61 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 96.6 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 96.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 96.59 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.59 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 96.57 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 96.56 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.55 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.54 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.54 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 96.54 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 96.54 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.54 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 96.52 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.52 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.52 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.51 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 96.5 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 96.5 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.49 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 96.49 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 96.48 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.48 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 96.48 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.48 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 96.48 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.46 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.46 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 96.46 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 96.45 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 96.45 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 96.45 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 96.44 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.43 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.43 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 96.41 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.41 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 96.41 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 96.4 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.4 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.4 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 96.4 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 96.39 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.39 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 96.39 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 96.38 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 96.38 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 96.38 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 96.37 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 96.37 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 96.36 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 96.35 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 96.35 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 96.35 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 96.3 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.29 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 96.29 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 96.28 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.28 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.28 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.28 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 96.28 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 96.28 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.27 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.27 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.27 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.26 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 96.26 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 96.26 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 96.25 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.25 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.25 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.24 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 96.24 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.23 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 96.23 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.23 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 96.23 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 96.22 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.22 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.22 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.21 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.21 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 96.19 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 96.19 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 96.17 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.17 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 96.17 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 96.17 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 96.16 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 96.15 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 96.14 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 96.13 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.13 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 96.13 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.12 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 96.12 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 96.11 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 96.11 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.11 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 96.11 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 96.1 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.1 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.09 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 96.09 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.08 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 96.06 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 96.06 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 96.06 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.06 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 96.05 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 96.05 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 96.04 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 96.04 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.04 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.04 |
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-62 Score=455.89 Aligned_cols=355 Identities=68% Similarity=1.195 Sum_probs=317.3
Q ss_pred CCCCCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEE
Q 018246 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTK 80 (359)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~ 80 (359)
|+.+|+..++|+++++..++.++.+++.+++.|+|+++||+|||.++|||++|++.+.|.++...+|.++|||++|+|++
T Consensus 5 ~~~~~~~~~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~ 84 (366)
T 1yqd_A 5 MSKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTE 84 (366)
T ss_dssp ---CHHHHSSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEE
T ss_pred cCCCcchhCCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEE
Confidence 67778777889999999888888899999999999999999999999999999999988765556789999999999999
Q ss_pred eCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccc
Q 018246 81 VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDA 160 (359)
Q Consensus 81 vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~ 160 (359)
+|++|++|++||||++.+....|+.|.+|+.|.++.|.+..+.+.+....|...+|+|+||+++|++.++++|+++++++
T Consensus 85 vG~~V~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~ 164 (366)
T 1yqd_A 85 VGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDG 164 (366)
T ss_dssp ECTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTT
T ss_pred ECCCCCcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHH
Confidence 99999999999999877766789999999999999997765444333223445679999999999999999999999999
Q ss_pred cccccchhhhhhhHhHhcCCCC-CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH
Q 018246 161 GAPLLCAGITVYSPMKYYGMTE-PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 161 aa~l~~~~~ta~~~l~~~~~~~-~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
||++++++.|||++++.... + +|++|||+|+|++|++++|+|+..|++|+++++++++++.+.+++|+++++++++.+
T Consensus 165 aa~l~~~~~ta~~al~~~~~-~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~ 243 (366)
T 1yqd_A 165 GAPLLCAGITVYSPLKYFGL-DEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQE 243 (366)
T ss_dssp TGGGGTHHHHHHHHHHHTTC-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHH
T ss_pred hhhhhhhHHHHHHHHHhcCc-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHH
Confidence 99999999999999988765 6 999999999999999999999999999999999999998885599999999998877
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhC
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKH 319 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g 319 (359)
.+.++.+++|+|||++|....+..++++|+++|+++.+|.......++...++.|++++.|+.....+++.++++++++|
T Consensus 244 ~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g 323 (366)
T 1yqd_A 244 QMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKH 323 (366)
T ss_dssp HHHHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcC
Confidence 77777789999999999876688999999999999999987666678888889999999999888888999999999999
Q ss_pred CCcccEEEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 320 NIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 320 ~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
++++.+++|||+++++||+.+.+++..||+|+.++++
T Consensus 324 ~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~~~ 360 (366)
T 1yqd_A 324 NITADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNT 360 (366)
T ss_dssp TCCCCEEEECGGGHHHHHHHHHTTCCSSEEEECHHHH
T ss_pred CCCCceEEEcHHHHHHHHHHHHcCCcceEEEEEcccc
Confidence 9998889999999999999999988889999998664
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-61 Score=449.22 Aligned_cols=347 Identities=50% Similarity=0.956 Sum_probs=308.3
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
.+|++.++..++.++.+++.+++.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|
T Consensus 6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~ 85 (357)
T 2cf5_A 6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF 85 (357)
T ss_dssp CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence 45777777777777889999999999999999999999999999999998876555678999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||||++.+....|+.|.+|+.|.++.|.+..+.+.+....|...+|+|+||+++|++.++++|+++++++||++++++
T Consensus 86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~ 165 (357)
T 2cf5_A 86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAG 165 (357)
T ss_dssp CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHH
T ss_pred CCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhhH
Confidence 99999988777678999999999999999776544433333344567999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCC-CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCC
Q 018246 169 ITVYSPMKYYGMTE-PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 169 ~ta~~~l~~~~~~~-~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~ 247 (359)
.|||+++..... + +|++|||+|+|++|++++|+|+..|++|+++++++++++.+.+++|+++++++++.+.+.+++++
T Consensus 166 ~ta~~~l~~~~~-~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g 244 (357)
T 2cf5_A 166 VTVYSPLSHFGL-KQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADS 244 (357)
T ss_dssp HHHHHHHHHTST-TSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTT
T ss_pred HHHHHHHHhcCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCC
Confidence 999999987655 7 99999999999999999999999999999999999999888449999999998887777777779
Q ss_pred ccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCee-eCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEE
Q 018246 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLE-VPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIE 326 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~ 326 (359)
+|+|||++|...+++.++++++++|+++.+|....... ++.. ++.|++++.|+..+...+++++++++++|++++.++
T Consensus 245 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~ 323 (357)
T 2cf5_A 245 LDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIE 323 (357)
T ss_dssp EEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCCHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCCHHHHHHHHHHHHcCCCCCceE
Confidence 99999999987668999999999999999998665444 5555 888999999999888899999999999999998889
Q ss_pred EEccccHHHHHHHHHcCCccEEEEEEcCCCc
Q 018246 327 LVRMDQINTAMERLAKSDVKYRFVIDVGNSK 357 (359)
Q Consensus 327 ~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~ 357 (359)
+|||+++++||+.+.+++..||+|++++++.
T Consensus 324 ~~~l~~~~~A~~~~~~~~~~gKvvi~~~~~~ 354 (357)
T 2cf5_A 324 VVKMDYVNTAFERLEKNDVRYRFVVDVEGSN 354 (357)
T ss_dssp EEEGGGHHHHHHHHHTTCSSSEEEEETTSCC
T ss_pred EEeHHHHHHHHHHHHCCCCceEEEEeCCccc
Confidence 9999999999999999888899999998753
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-61 Score=446.24 Aligned_cols=341 Identities=43% Similarity=0.774 Sum_probs=301.0
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
.+||++++. +.++.+++++++.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|
T Consensus 3 m~mka~~~~--~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~ 80 (348)
T 3two_A 3 VQSKGFAIF--SKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKF 80 (348)
T ss_dssp EEEEEEEBC--STTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred eEEEEEEEc--cCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence 357777765 345669999999999999999999999999999999999987767789999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccc--cCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSI--DRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
++||||++.+....|+.|.+|+.|.++.|......+... ...+...+|+|+||+++|+++++++|+++++++||++++
T Consensus 81 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~ 160 (348)
T 3two_A 81 KIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLC 160 (348)
T ss_dssp CTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGT
T ss_pred CCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhh
Confidence 999999887776799999999999999998433222211 112334459999999999999999999999999999999
Q ss_pred hhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcC
Q 018246 167 AGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMG 246 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~ 246 (359)
++.|||+++... .+++|++|||+|+|++|++++|+|+..|++|+++++++++.+.+ +++|+++++ .+.+. +..
T Consensus 161 ~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~v~--~~~~~---~~~ 233 (348)
T 3two_A 161 AGITTYSPLKFS-KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA-LSMGVKHFY--TDPKQ---CKE 233 (348)
T ss_dssp HHHHHHHHHHHT-TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-HHTTCSEEE--SSGGG---CCS
T ss_pred hHHHHHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HhcCCCeec--CCHHH---Hhc
Confidence 999999999877 55999999999999999999999999999999999999999988 889999988 33332 223
Q ss_pred CccEEEECCCChhhHHHHHhccccCCEEEEecCCC-CCee-eCHHHHH-hcCcEEEEeecCCHHHHHHHHHHHHhCCCcc
Q 018246 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLE-VPIFALV-GARRLVGGSNVGGMKETQEMLDFCAKHNIAA 323 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~-~~~~~~~-~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~ 323 (359)
++|+|||++|+...+..++++|+++|+++.+|... .... ++...++ .|++++.|+..++..+++++++++++|++++
T Consensus 234 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~ 313 (348)
T 3two_A 234 ELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNIYP 313 (348)
T ss_dssp CEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCCHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc
Confidence 99999999999866999999999999999999877 5555 7777887 9999999999999999999999999999999
Q ss_pred cEEEEccccHHHHHHHHHcCCccEEEEEEcCCCcC
Q 018246 324 DIELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358 (359)
Q Consensus 324 ~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~~ 358 (359)
.+++|||+++++||+.+.+++..||+|++++++.|
T Consensus 314 ~~~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~~~~ 348 (348)
T 3two_A 314 EIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD 348 (348)
T ss_dssp CEEEECGGGHHHHHHHHHTTCCCSEEEEEGGGCC-
T ss_pred eEEEEEHHHHHHHHHHHHcCCCceEEEEecCCcCC
Confidence 88999999999999999999988999999988754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-60 Score=439.57 Aligned_cols=335 Identities=35% Similarity=0.609 Sum_probs=303.2
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
+||++++..++ +.+++++++.|+|+++||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus 2 ~MkA~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~ 79 (340)
T 3s2e_A 2 MMKAAVVRAFG--APLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRV 79 (340)
T ss_dssp EEEEEEBCSTT--SCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSC
T ss_pred ceEEEEEecCC--CCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcC
Confidence 58888877543 34999999999999999999999999999999999998764 5689999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||||++......|+.|.+|+.|+++.|.+.... |...+|+|+||+++|+++++++|+++++++|+++++++
T Consensus 80 ~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~ 152 (340)
T 3s2e_A 80 KEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNT-------GYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAG 152 (340)
T ss_dssp CTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHH
T ss_pred CCCCEEEecCCCCCCCCChHHhCcCcccCcccccc-------CCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchh
Confidence 99999976555569999999999999999987543 44567999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhc
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAM 245 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~ 245 (359)
.|||+++... .+++|++|||+|+|++|++++|+|++.|++|+++++++++++.+ +++|+++++|+++.+. +.+..
T Consensus 153 ~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~ 230 (340)
T 3s2e_A 153 VTVYKGLKVT-DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEI 230 (340)
T ss_dssp HHHHHHHHTT-TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHcCCCEEEeCCCcCHHHHHHHhC
Confidence 9999999655 55999999999999999999999999999999999999999888 8999999999877533 33333
Q ss_pred CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE
Q 018246 246 GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI 325 (359)
Q Consensus 246 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~ 325 (359)
+++|++||++++...++.++++++++|+++.+|...+..+++...++.+++++.|+...+.++++++++++++|++++.+
T Consensus 231 g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~ 310 (340)
T 3s2e_A 231 GGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAHGDVKATV 310 (340)
T ss_dssp SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCCE
T ss_pred CCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCCCceE
Confidence 58999999999888799999999999999999988777888888999999999999999999999999999999999988
Q ss_pred EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 326 ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 326 ~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
+.++|+++++||+.+.+++..||+||++++
T Consensus 311 ~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~ 340 (340)
T 3s2e_A 311 STAKLDDVNDVFGRLREGKVEGRVVLDFSR 340 (340)
T ss_dssp EEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred EEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 899999999999999999999999999864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-60 Score=441.22 Aligned_cols=344 Identities=49% Similarity=0.856 Sum_probs=299.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
|+..++...+..+.+++.+++.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|++
T Consensus 21 ~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~~v 100 (369)
T 1uuf_A 21 LKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAP 100 (369)
T ss_dssp --CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred ceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCCCCCC
Confidence 34444444445577999999999999999999999999999999999987655567899999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCccccccccccc-CCCCCCCCccceEEEeeCCceEECCCC-CCccccccccchh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID-RDGTKTYGGYSDLIVVDQHYVLRFPDN-MPLDAGAPLLCAG 168 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~g~~a~~~~~~~~~~~~lp~~-l~~~~aa~l~~~~ 168 (359)
||||++.+....|+.|.+|++|.++.|.++.+.+.+.. ..|...+|+|+||+++|++.++++|++ +++++||++++++
T Consensus 101 GDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~ 180 (369)
T 1uuf_A 101 GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAG 180 (369)
T ss_dssp TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHH
T ss_pred CCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhH
Confidence 99999888877899999999999999998632221111 113345699999999999999999999 9999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCc
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 248 (359)
.|||++++.. .+++|++|||+|+|++|++++|+|+..|++|+++++++++++.+ +++|+++++++++.+.+.++.+++
T Consensus 181 ~tA~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~~~g~ 258 (369)
T 1uuf_A 181 ITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALGADEVVNSRNADEMAAHLKSF 258 (369)
T ss_dssp HHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEETTCHHHHHTTTTCE
T ss_pred HHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCcEEeccccHHHHHHhhcCC
Confidence 9999999886 56999999999999999999999999999999999999999888 789999999998877666666799
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEEE
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIEL 327 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~~ 327 (359)
|+|||++|+..+++.++++|+++|+++.+|...... .++...++.|++++.|+.....++++++++++++|++++.+++
T Consensus 259 Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~i~~ 338 (369)
T 1uuf_A 259 DFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEM 338 (369)
T ss_dssp EEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTCCCCEEE
T ss_pred CEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCCHHHHHHHHHHHHhCCCCcceEE
Confidence 999999998766899999999999999999876544 6777788899999999998888999999999999999988888
Q ss_pred EccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 328 VRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 328 ~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
|||+++++||+.+.+++..||+|++++++
T Consensus 339 ~~l~~~~~A~~~~~~~~~~gKvvi~~~~~ 367 (369)
T 1uuf_A 339 IRADQINEAYERMLRGDVKYRFVIDNRTL 367 (369)
T ss_dssp ECGGGHHHHHHHHHTTCSSSEEEEEGGGG
T ss_pred EcHHHHHHHHHHHHcCCCceEEEEecCCC
Confidence 99999999999999888789999999764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-60 Score=440.00 Aligned_cols=345 Identities=33% Similarity=0.623 Sum_probs=300.6
Q ss_pred CCcccceeeeeecCCCCCcccee--eecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFH--FSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (359)
++.+||++++..++ +.+++.+ ++.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++
T Consensus 3 ~p~~mka~~~~~~~--~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~ 80 (360)
T 1piw_A 3 YPEKFEGIAIQSHE--DWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPK 80 (360)
T ss_dssp TTTCEEEEEECCSS--STTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTT
T ss_pred CChheEEEEEecCC--CCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCC
Confidence 34578988876532 3588889 9999999999999999999999999999987665567899999999999999999
Q ss_pred CC-CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 85 VS-KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 85 v~-~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
|+ +|++||||++.+....|+.|.+|+.|.++.|.+....+.+....|...+|+|+||+++|+++++++|+++++++||+
T Consensus 81 v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~ 160 (360)
T 1piw_A 81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAP 160 (360)
T ss_dssp CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGG
T ss_pred CCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhh
Confidence 99 99999999877666699999999999999998751111111112334579999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-HHHH
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP-AKVK 242 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~ 242 (359)
+++++.|||+++.. ..+++|++|||+|+|++|++++|+|+.+|++|+++++++++++.+ +++|+++++++++. +...
T Consensus 161 l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~-~~lGa~~v~~~~~~~~~~~ 238 (360)
T 1piw_A 161 LLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA-MKMGADHYIATLEEGDWGE 238 (360)
T ss_dssp GGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEEGGGTSCHHH
T ss_pred hhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCCEEEcCcCchHHHH
Confidence 99999999999988 456999999999999999999999999999999999999999888 78999999988765 5555
Q ss_pred HhcCCccEEEECCCC--hhhHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhC
Q 018246 243 AAMGTMDYIIDTVSA--VHSLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKH 319 (359)
Q Consensus 243 ~~~~~~d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g 319 (359)
++.+++|+|||++|+ ...++.++++|+++|+++.+|.... . .++...++.|++++.|+..++..+++++++++++|
T Consensus 239 ~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g 317 (360)
T 1piw_A 239 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEK 317 (360)
T ss_dssp HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred HhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhC
Confidence 555789999999998 5558899999999999999998765 4 45666778899999999988889999999999999
Q ss_pred CCcccEEEEcccc--HHHHHHHHHcCCccEEEEEEcCCC
Q 018246 320 NIAADIELVRMDQ--INTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 320 ~i~~~~~~~~l~~--~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
++++.+++|||++ +++||+.+.+++..||+|++++++
T Consensus 318 ~l~~~i~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~~ 356 (360)
T 1piw_A 318 DIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVGYDK 356 (360)
T ss_dssp TCCCCEEEEESSHHHHHHHHHHHHHTCCSSEEEEECCHH
T ss_pred CCcceEEEEeccHhHHHHHHHHHHCCCCceEEEEecCcc
Confidence 9998889999999 999999999888889999998764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-59 Score=431.73 Aligned_cols=334 Identities=28% Similarity=0.496 Sum_probs=304.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||+.++.. .+++.+++.+.+.|+|+||||||||.++|||++|+++++|.++ ..+|.++|||++|+|+++|++|++|++
T Consensus 1 MKA~v~~~-~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~-~~~p~i~GhE~aG~V~~vG~~V~~~~~ 78 (348)
T 4eez_A 1 MKAAVVRH-NPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG-NKAGTVLGHEGIGIVKEIGADVSSLQV 78 (348)
T ss_dssp CEEEEECS-SCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC-CCTTCBCCSEEEEEEEEECTTCCSCCT
T ss_pred CeEEEEEc-CCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC-CCCCcccceeEEEEEEEECceeeeccc
Confidence 77877654 4567799999999999999999999999999999999999876 567999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||||++.+....|+.|.+|..+.++.|...... +...+|+|+||+++|++.++++|+++++++|+++++++.|
T Consensus 79 GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~t 151 (348)
T 4eez_A 79 GDRVSVAWFFEGCGHCEYCVSGNETFCREVKNA-------GYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVT 151 (348)
T ss_dssp TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEeecccccccCccccccCCccccccccccc-------ccccCCcceeeccccccceeecCCCCCHHHHhhcccceee
Confidence 999999988889999999999999999887554 3456799999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhcC
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAMG 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~ 246 (359)
||++++.... ++|++|||+|+|++|++++|+|+++ |++|++++++++|++.+ +++|+++++|+++.+ .+.++++
T Consensus 152 a~~~l~~~~~-~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~-~~~Ga~~~i~~~~~~~~~~v~~~t~ 229 (348)
T 4eez_A 152 TYKAIKVSGV-KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITG 229 (348)
T ss_dssp HHHHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHH-HHTTCSEEEEC-CCCHHHHHHHHTT
T ss_pred EEeeecccCC-CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhh-hhcCCeEEEeCCCCCHHHHhhhhcC
Confidence 9999987766 9999999999999999999999977 56999999999998888 899999999997754 4555554
Q ss_pred --CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCccc
Q 018246 247 --TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAAD 324 (359)
Q Consensus 247 --~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~ 324 (359)
++|++++++++..++..++++++++|+++.+|......+++...++.|++++.|+..+++.+++++++++++|++++.
T Consensus 230 g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~~~l~~~g~i~p~ 309 (348)
T 4eez_A 230 GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAFQFGAEGKVKPI 309 (348)
T ss_dssp SSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECCSCCHHHHHHHHHHHHTTSCCCC
T ss_pred CCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHcCCCEEE
Confidence 799999999999889999999999999999998887888999999999999999999999999999999999999998
Q ss_pred EEEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 325 IELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 325 ~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
+++|||+++++||+.+.+++..||+||+++.
T Consensus 310 ~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk 340 (348)
T 4eez_A 310 VATRKLEEINDIIDEMKAGKIEGRMVIDFTK 340 (348)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred EEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence 8999999999999999999999999999975
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=426.38 Aligned_cols=334 Identities=32% Similarity=0.584 Sum_probs=297.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..++ +.+++++++.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++|++|+
T Consensus 1 Mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~ 78 (339)
T 1rjw_A 1 MKAAVVEQFK--EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLK 78 (339)
T ss_dssp CEEEEBSSTT--SCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred CeEEEEcCCC--CCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCC
Confidence 5677665432 2588999999999999999999999999999999998765 245789999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+....|+.|.+|+.|.++.|.+.... |...+|+|+||+++|+++++++|+++++++||++++++.
T Consensus 79 vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ 151 (339)
T 1rjw_A 79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA-------GYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGV 151 (339)
T ss_dssp TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHH
T ss_pred CCCEEEEecCCCCCCCCchhhCcCcccCCCccee-------ecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHH
Confidence 9999988766657999999999999999876432 334579999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhcC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAMG 246 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~ 246 (359)
|||+++... .+++|++|||+|+|++|++++|+|+..|++|+++++++++++.+ +++|+++++|+++.+ .+.++++
T Consensus 152 ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~d~~~~~~~~~~~~~~~ 229 (339)
T 1rjw_A 152 TTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKVG 229 (339)
T ss_dssp HHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECTTTSCHHHHHHHHHS
T ss_pred HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEecCCCccHHHHHHHHhC
Confidence 999999888 45999999999999999999999999999999999999999888 789999999876543 3444446
Q ss_pred CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccEE
Q 018246 247 TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADIE 326 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~~ 326 (359)
++|++||++|...++..++++|+++|+++.+|...+..+++...++.|++++.|+.....++++++++++++|++++.++
T Consensus 230 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~ 309 (339)
T 1rjw_A 230 GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKTIIE 309 (339)
T ss_dssp SEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCCEE
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEEeccCCHHHHHHHHHHHHcCCCCccEE
Confidence 89999999998766899999999999999999877667788888889999999999888899999999999999998889
Q ss_pred EEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 327 LVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 327 ~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
+|||+++++||+.+.+++..||+|+++++
T Consensus 310 ~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 338 (339)
T 1rjw_A 310 VQPLEKINEVFDRMLKGQINGRVVLTLED 338 (339)
T ss_dssp EEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred EEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence 99999999999999988878999999864
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=429.59 Aligned_cols=332 Identities=26% Similarity=0.437 Sum_probs=291.3
Q ss_pred CcccceeeeeecCCCCCccceeeecCC-CCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCC
Q 018246 8 EHPQKAIGWAARDNTGTFSPFHFSRRE-TGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~ 83 (359)
+.+||++++..++ +.+++++++.|+ |+++||||||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|+
T Consensus 13 ~~~mka~~~~~~g--~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~ 90 (359)
T 1h2b_A 13 VERLKAARLHEYN--KPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAE 90 (359)
T ss_dssp ----CEEEESSTT--SCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECT
T ss_pred hhhceEEEEecCC--CCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECC
Confidence 5578988876432 358899999999 9999999999999999999999998764 346789999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccc-
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA- 162 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa- 162 (359)
+|++|++||||+..+. ..|+.|.+|+.|.++.|.+.... |...+|+|+||+++|+++++++|+++++++|+
T Consensus 91 ~v~~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~ 162 (359)
T 1h2b_A 91 GVEGLEKGDPVILHPA-VTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSVIKLPKDISREKLVE 162 (359)
T ss_dssp TCCSCCTTCEEEECSC-BCCSCSHHHHTTCGGGCTTCBCB-------TTTBCCSSBSEEEECGGGEEECCTTCCHHHHHH
T ss_pred CCCCCCCCCEEEeCCC-CCCCCChhhhCcCcccCCCcccc-------ccCCCCcccceEEechHhEEECCCCCCHHHHhh
Confidence 9999999999966544 48999999999999999976432 33467999999999999999999999999998
Q ss_pred --cccchhhhhhhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCH
Q 018246 163 --PLLCAGITVYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDP 238 (359)
Q Consensus 163 --~l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~ 238 (359)
++++++.|||+++... ..+++|++|||+|+|++|++++|+|+.. |++|+++++++++++.+ +++|+++++|+++.
T Consensus 163 ~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~ 241 (359)
T 1h2b_A 163 MAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA-ERLGADHVVDARRD 241 (359)
T ss_dssp TGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH-HHTTCSEEEETTSC
T ss_pred ccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHhCCCEEEeccch
Confidence 8999999999999885 6669999999999999999999999999 99999999999999888 89999999998765
Q ss_pred --HHHHHhcC--CccEEEECCCChh--hHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHH
Q 018246 239 --AKVKAAMG--TMDYIIDTVSAVH--SLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312 (359)
Q Consensus 239 --~~~~~~~~--~~d~vid~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~ 312 (359)
+.+.+++. ++|+|||++|+.. ++..++++ ++|+++.+|..... .++...++.|++++.|+......+++++
T Consensus 242 ~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 318 (359)
T 1h2b_A 242 PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRVISSEVSFEGSLVGNYVELHEL 318 (359)
T ss_dssp HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHHHhCCcEEEEecCCCHHHHHHH
Confidence 44555553 7999999999985 68888888 99999999986655 7788888899999999998888999999
Q ss_pred HHHHHhCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 313 LDFCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 313 ~~~l~~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++++|++++.+++|||+++++||+.+.+++..||+|+++
T Consensus 319 ~~l~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 359 (359)
T 1h2b_A 319 VTLALQGKVRVEVDIHKLDEINDVLERLEKGEVLGRAVLIP 359 (359)
T ss_dssp HHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred HHHHHcCCCcceEEEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence 99999999988779999999999999999988789999974
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-58 Score=429.58 Aligned_cols=346 Identities=23% Similarity=0.335 Sum_probs=295.9
Q ss_pred CCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCC
Q 018246 4 SPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 83 (359)
+..++.+||++++..++ +.+++++++.|+|+++||||||++++||++|++.+.|..+...+|.++|||++|+|+++|+
T Consensus 2 ~~~~~~tmkA~v~~~~~--~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~ 79 (378)
T 3uko_A 2 TQGQVITCKAAVAYEPN--KPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGE 79 (378)
T ss_dssp CTTSCEEEEEEEBCSTT--SCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECT
T ss_pred CcccceeeEEEEEecCC--CccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCC
Confidence 45577889998876533 3499999999999999999999999999999999999877677899999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCccccccc--ccccCC-------------CCCCCCccceEEEeeCCc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY--NSIDRD-------------GTKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~--~~~~~~-------------g~~~~g~~a~~~~~~~~~ 148 (359)
+|++|++||||++.+.. .|+.|.+|++|.++.|.+..... +....+ .....|+|+||+++|++.
T Consensus 80 ~v~~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~ 158 (378)
T 3uko_A 80 GVTEVQAGDHVIPCYQA-ECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVS 158 (378)
T ss_dssp TCCSCCTTCEEEECSSC-CCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred CCCcCCCCCEEEEecCC-CCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhh
Confidence 99999999999776654 89999999999999999864321 100011 112347999999999999
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL 227 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~ 227 (359)
++++|+++++++|+++++++.|||+++.+...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++
T Consensus 159 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l 237 (378)
T 3uko_A 159 VAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF 237 (378)
T ss_dssp EEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT
T ss_pred eEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc
Confidence 999999999999999999999999999888788999999999999999999999999999 899999999999888 899
Q ss_pred CCcEEecCC--CH---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEE
Q 018246 228 GADAFLVSS--DP---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLV 298 (359)
Q Consensus 228 g~~~v~~~~--~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i 298 (359)
|++++++++ +. +.+.++++ ++|+|||++|++.+++.++++++++ |+++.+|.... ..+++...++. ++++
T Consensus 238 Ga~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i 316 (378)
T 3uko_A 238 GVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVW 316 (378)
T ss_dssp TCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEE
T ss_pred CCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhc-CcEE
Confidence 999999886 22 34555554 8999999999987799999999996 99999997653 45667666654 8999
Q ss_pred EEeecC---CHHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 299 GGSNVG---GMKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 299 ~g~~~~---~~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
.|+... ..+++.++++++++|++++ .+ ++|||+++++||+.+.+++.. |+||++++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~~~~ 378 (378)
T 3uko_A 317 KGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLDTSK 378 (378)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEETTC
T ss_pred EEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEecCC
Confidence 998765 4577999999999999864 45 899999999999999888765 99999874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-58 Score=423.49 Aligned_cols=334 Identities=25% Similarity=0.400 Sum_probs=294.3
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC--CCCCCCcccccccEEEEEeCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG--VTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
||++++..+++ .+++++++.|+|+++||||||++++||++|++.+.|.++ ...+|.++|||++|+|+++|++|++|
T Consensus 1 MkA~~~~~~g~--~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~ 78 (345)
T 3jv7_A 1 MKAVQYTEIGS--EPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGF 78 (345)
T ss_dssp CEEEEECSTTS--CCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSC
T ss_pred CeEEEEcCCCC--ceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCC
Confidence 67777665433 389999999999999999999999999999999998754 35678999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCc-ccccccccccCCCCCCCCccceEEEee-CCceEECCCCCCccccccccc
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCP-NMILTYNSIDRDGTKTYGGYSDLIVVD-QHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~g~~a~~~~~~-~~~~~~lp~~l~~~~aa~l~~ 166 (359)
++||||++.+.. .|+.|.+|++|.++.|. +..+.+ ...|...+|+|+||+++| ++.++++|+ +++++||++++
T Consensus 79 ~vGdrV~~~~~~-~cg~C~~c~~g~~~~c~~~~~~~~---~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~ 153 (345)
T 3jv7_A 79 GVGDAVAVYGPW-GCGACHACARGRENYCTRAADLGI---TPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTD 153 (345)
T ss_dssp CTTCEEEECCSC-CCSSSHHHHTTCGGGCSSHHHHTC---CCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGT
T ss_pred CCCCEEEEecCC-CCCCChHHHCcCcCcCcccccccc---ccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhh
Confidence 999999887765 99999999999999994 332211 112445679999999999 999999999 99999999999
Q ss_pred hhhhhhhHhHh-cCCCCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHH
Q 018246 167 AGITVYSPMKY-YGMTEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVK 242 (359)
Q Consensus 167 ~~~ta~~~l~~-~~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~ 242 (359)
++.|||+++.. ...+++|++|||+|+|++|++++|+|++. |++|+++++++++++.+ +++|+++++++++. +.+.
T Consensus 154 ~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~v~ 232 (345)
T 3jv7_A 154 AGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA-REVGADAAVKSGAGAADAIR 232 (345)
T ss_dssp TTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH-HHTTCSEEEECSTTHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCCEEEcCCCcHHHHHH
Confidence 99999999998 45669999999999999999999999999 56999999999999888 89999999988652 3455
Q ss_pred HhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhC
Q 018246 243 AAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKH 319 (359)
Q Consensus 243 ~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g 319 (359)
++++ ++|+|||++|++.+++.++++|+++|+++.+|...+ ..+++. .++.+++++.++...+.++++++++++++|
T Consensus 233 ~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g 311 (345)
T 3jv7_A 233 ELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGTRSELMEVVALARAG 311 (345)
T ss_dssp HHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCCHHHHHHHHHHHHTT
T ss_pred HHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCCHHHHHHHHHHHHcC
Confidence 5554 899999999998669999999999999999998776 667775 778899999999999999999999999999
Q ss_pred CCcccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 320 NIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 320 ~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++.+++|+|+++++||+.+.+++..||+||++
T Consensus 312 ~l~~~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p 345 (345)
T 3jv7_A 312 RLDIHTETFTLDEGPAAYRRLREGSIRGRGVVVP 345 (345)
T ss_dssp CCCCCEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred CCceEEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence 9999889999999999999999999999999864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=420.61 Aligned_cols=338 Identities=29% Similarity=0.500 Sum_probs=298.0
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
+|.+||++++..++ ..+++++++.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++|
T Consensus 2 ~p~~mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v 79 (347)
T 2hcy_A 2 IPETQKGVIFYESH--GKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENV 79 (347)
T ss_dssp CCSEEEEEEESSTT--CCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTC
T ss_pred CCcccEEEEEeCCC--CCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCC
Confidence 56679998876543 2589999999999999999999999999999999998765 24578999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
++|++||||++.+....|+.|.+|+.|.++.|.+.... |...+|+|+||+++|+++++++|+++++++|++++
T Consensus 80 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~ 152 (347)
T 2hcy_A 80 KGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLS-------GYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPIL 152 (347)
T ss_dssp CSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEB-------TTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGG
T ss_pred CCCcCCCEEEEecCCCCCCCChhhhCCCcccCcccccc-------ccCCCCcceeEEEeccccEEECCCCCCHHHHHHHh
Confidence 99999999988766657999999999999999976432 33457999999999999999999999999999999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-H---HH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD-P---AK 240 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~---~~ 240 (359)
+++.|||+++... .+++|++|||+|+ |++|++++++++..|++|+++++++++.+.+ +++|+++++|.++ . +.
T Consensus 153 ~~~~ta~~~l~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~ 230 (347)
T 2hcy_A 153 CAGITVYKALKSA-NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSIGGEVFIDFTKEKDIVGA 230 (347)
T ss_dssp THHHHHHHHHHTT-TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHTTCCEEEETTTCSCHHHH
T ss_pred hhHHHHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHcCCceEEecCccHhHHHH
Confidence 9999999999877 5699999999997 9999999999999999999999999998777 7899998888663 2 23
Q ss_pred HHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHh
Q 018246 241 VKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318 (359)
Q Consensus 241 ~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~ 318 (359)
+.+++. ++|++||++|....++.++++|+++|+++.+|...+ ..+++...++.|++++.|+......+++++++++++
T Consensus 231 ~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~ 310 (347)
T 2hcy_A 231 VLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFAR 310 (347)
T ss_dssp HHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCCHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCCHHHHHHHHHHHHh
Confidence 444433 799999999986668999999999999999998763 467788888899999999988888999999999999
Q ss_pred CCCcccEEEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 319 HNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 319 g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
|++++.+++|||+++++||+.+.+++..||+|+++++
T Consensus 311 g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 347 (347)
T 2hcy_A 311 GLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK 347 (347)
T ss_dssp TSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred CCCccceEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence 9999888999999999999999988878999998863
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-58 Score=423.35 Aligned_cols=330 Identities=27% Similarity=0.374 Sum_probs=274.7
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC--CCCCCCcccccccEEEEEeCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG--VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
+||++++..++ +.+++++++.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++ ++
T Consensus 3 ~mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~ 79 (344)
T 2h6e_A 3 KSKAALLKKFS--EPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK 79 (344)
T ss_dssp EEEBCEECSCC--C-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred eeEEEEEecCC--CCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence 68888876532 3588999999999999999999999999999999998765 3467899999999999999999 99
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEee-CCceEECCCCCCccccccccc
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVD-QHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~-~~~~~~lp~~l~~~~aa~l~~ 166 (359)
|++||||+..+. ..|+.|.+|+.|.++.|.+.... |...+|+|+||+++| +++++++ +++++++|+++++
T Consensus 80 ~~~GdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~ 150 (344)
T 2h6e_A 80 VKKGDNVVVYAT-WGDLTCRYCREGKFNICKNQIIP-------GQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLAD 150 (344)
T ss_dssp CCTTCEEEECSC-BCCSCSTTGGGTCGGGCTTCBCB-------TTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGT
T ss_pred CCCCCEEEECCC-CCCCCChhhhCCCcccCCCcccc-------ccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhh
Confidence 999999965544 48999999999999999976322 334679999999999 9999999 9999999999999
Q ss_pred hhhhhhhHhHhc----CCCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHcCCcEEecCCC-HH
Q 018246 167 AGITVYSPMKYY----GMTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKLGADAFLVSSD-PA 239 (359)
Q Consensus 167 ~~~ta~~~l~~~----~~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~~ 239 (359)
++.|||+++... +.+ +|++|||+|+|++|++++|+|+.+ |++|+++++++++++.+ +++|+++++++++ .+
T Consensus 151 ~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~ 228 (344)
T 2h6e_A 151 AGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFA-LELGADYVSEMKDAES 228 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH-HHHTCSEEECHHHHHH
T ss_pred hhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH-HHhCCCEEeccccchH
Confidence 999999999887 366 999999999999999999999999 99999999999999888 7899999998876 55
Q ss_pred HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHH
Q 018246 240 KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCA 317 (359)
Q Consensus 240 ~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~ 317 (359)
.+.+++. ++|+|||++|+..+++.++++++++|+++.+|.......++...++.|++++.|+.....+++++++++++
T Consensus 229 ~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~ 308 (344)
T 2h6e_A 229 LINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSE 308 (344)
T ss_dssp HHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEecCCHHHHHHHHHHHH
Confidence 5666653 79999999999866999999999999999999876666788888889999999998888899999999999
Q ss_pred hCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 318 KHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 318 ~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+|++++.+++|||+++++||+.+.+++..||+|+++
T Consensus 309 ~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 344 (344)
T 2h6e_A 309 SGKIKPYIIKVPLDDINKAFTNLDEGRVDGRQVITP 344 (344)
T ss_dssp TTSSCCCEEEECC----------------CEEEECC
T ss_pred cCCCCcceEEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence 999988779999999999999999888789999864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-58 Score=426.42 Aligned_cols=338 Identities=22% Similarity=0.362 Sum_probs=291.0
Q ss_pred CCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCC
Q 018246 4 SPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 83 (359)
.+.++.+||++++..+ +.+++++++.|+|+++||+|||.+++||++|++.+.|.++ ..+|.++|||++|+|+++|+
T Consensus 17 ~~~~p~~mkA~v~~~~---~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~ 92 (370)
T 4ej6_A 17 NLYFQSMMKAVRLESV---GNISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGS 92 (370)
T ss_dssp ----CCEEEEEEEEET---TEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECT
T ss_pred ccccchheEEEEEecC---CceEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECC
Confidence 3567888999887753 5699999999999999999999999999999999999764 56789999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
+|++|++||||++.+. ..|+.|.+|+.|.++.|.+.... |...+|+|+||+++|++.++++|+++++++||
T Consensus 93 ~v~~~~vGdrV~~~~~-~~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa- 163 (370)
T 4ej6_A 93 AVRDIAPGARITGDPN-ISCGRCPQCQAGRVNLCRNLRAI-------GIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA- 163 (370)
T ss_dssp TCCSSCTTCEEEECCE-ECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-
T ss_pred CCCCCCCCCEEEECCC-CCCCCChHHhCcCcccCCCcccc-------CCCCCCcceEEEEEchhhEEECCCCCCHHHHh-
Confidence 9999999999988776 49999999999999999987543 34467999999999999999999999999987
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHH--
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAK-- 240 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~-- 240 (359)
+..++.|||+++.... +++|++|||+|+|++|++++|+|++.|+ +|+++++++++.+.+ +++|+++++|+++.+.
T Consensus 164 l~~~~~ta~~~l~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~ 241 (370)
T 4ej6_A 164 FCEPLACCLHGVDLSG-IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEVGATATVDPSAGDVVE 241 (370)
T ss_dssp GHHHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHTCSEEECTTSSCHHH
T ss_pred hhhHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCCEEECCCCcCHHH
Confidence 7778999999995554 5999999999999999999999999999 899999999998877 8999999999876543
Q ss_pred -HHH---hc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCCHHHHHHHH
Q 018246 241 -VKA---AM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGGMKETQEML 313 (359)
Q Consensus 241 -~~~---~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 313 (359)
+.+ ++ +++|+|||++|+..+++.++++|+++|+++.+|.... ..+++...++.|++++.|+.... .++++++
T Consensus 242 ~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-~~~~~~~ 320 (370)
T 4ej6_A 242 AIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINP-FVHRRAA 320 (370)
T ss_dssp HHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCT-TCHHHHH
T ss_pred HHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccCh-HHHHHHH
Confidence 333 33 3899999999987779999999999999999998665 56788899999999999988765 5699999
Q ss_pred HHHHhCCCc--ccE-EEEccccHHHHHHHHHcCC-ccEEEEEEcCCCc
Q 018246 314 DFCAKHNIA--ADI-ELVRMDQINTAMERLAKSD-VKYRFVIDVGNSK 357 (359)
Q Consensus 314 ~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~-~~gkvvv~~~~~~ 357 (359)
+++++|+++ +.+ ++|||+++++||+.+.+++ ..+|+++++++-.
T Consensus 321 ~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~ia 368 (370)
T 4ej6_A 321 DLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAERVA 368 (370)
T ss_dssp HHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC-----
T ss_pred HHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccccc
Confidence 999999995 445 8999999999999998876 4589998887643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=418.15 Aligned_cols=344 Identities=26% Similarity=0.356 Sum_probs=290.1
Q ss_pred CCCCCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEE
Q 018246 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTK 80 (359)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~ 80 (359)
|..+ ..|.+||++++..+ .+.+++++++.|+|+++||||||++++||++|++++.|.++ ..+|.++|||++|+|++
T Consensus 1 ~~~~-~~p~~mka~~~~~~--g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~ 76 (373)
T 1p0f_A 1 MCTA-GKDITCKAAVAWEP--HKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVES 76 (373)
T ss_dssp -CCT-TSCEEEEEEEBSST--TSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEE
T ss_pred Cccc-CCcceeEEEEEEcC--CCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEE
Confidence 6644 46777888876543 33588999999999999999999999999999999998765 56789999999999999
Q ss_pred eCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccc-cccCC-------------CCCCCCccceEEEeeC
Q 018246 81 VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SIDRD-------------GTKTYGGYSDLIVVDQ 146 (359)
Q Consensus 81 vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~~~-------------g~~~~g~~a~~~~~~~ 146 (359)
+|++|++|++||||++.+.. .|+.|.+|++|.++.|.+....++ +...+ +...+|+|+||+++|+
T Consensus 77 vG~~v~~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~ 155 (373)
T 1p0f_A 77 IGAGVTCVKPGDKVIPLFVP-QCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVAD 155 (373)
T ss_dssp ECTTCCSCCTTCEEEECSSC-CCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEET
T ss_pred ECCCCCccCCCCEEEECCCC-CCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEch
Confidence 99999999999999887654 899999999999999998643210 11000 1123599999999999
Q ss_pred CceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHH
Q 018246 147 HYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAIS 225 (359)
Q Consensus 147 ~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~ 225 (359)
++++++|++++++ ||++++++.|||+++.....+++|++|||+|+|++|++++|+|+++|+ +|+++++++++++.+ +
T Consensus 156 ~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~ 233 (373)
T 1p0f_A 156 IAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-I 233 (373)
T ss_dssp TSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-H
T ss_pred hhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-H
Confidence 9999999999999 999999999999999877777999999999999999999999999999 899999999999888 8
Q ss_pred HcCCcEEecCCC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCc
Q 018246 226 KLGADAFLVSSD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARR 296 (359)
Q Consensus 226 ~~g~~~v~~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~ 296 (359)
++|+++++++++ . +.+.+++. ++|+|||++|+..++..++++++++ |+++.+|.... ...++...++.++
T Consensus 234 ~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~- 312 (373)
T 1p0f_A 234 ELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR- 312 (373)
T ss_dssp HTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-
T ss_pred HcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-
Confidence 999999998763 1 33455554 8999999999877689999999999 99999997653 4677777777788
Q ss_pred EEEEeecC--CHHHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 297 LVGGSNVG--GMKETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 297 ~i~g~~~~--~~~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++.|+... ..++++++++++++|+++ +.+ ++|||+++++||+.+.+++. +|+|+++
T Consensus 313 ~i~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~ 373 (373)
T 1p0f_A 313 SLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY 373 (373)
T ss_dssp EEEECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred eEEeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence 99998653 346899999999999996 445 89999999999999987764 7999864
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=419.17 Aligned_cols=341 Identities=21% Similarity=0.320 Sum_probs=288.9
Q ss_pred CCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCC
Q 018246 6 ETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
..|.+||++++.. ..+.+++++++.|+|+++||||||++++||++|++.+.|. +...+|.++|||++|+|+++|++|
T Consensus 4 ~~p~~mka~~~~~--~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v 80 (376)
T 1e3i_A 4 GKVIKCKAAIAWK--TGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGV 80 (376)
T ss_dssp TSCEEEEEEEBCS--TTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTC
T ss_pred CCChheeEEEEec--CCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCC
Confidence 3556678777654 3335889999999999999999999999999999999886 445678999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccc----ccc-ccccCCC-------------CCCCCccceEEEeeCC
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMI----LTY-NSIDRDG-------------TKTYGGYSDLIVVDQH 147 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~----~~~-~~~~~~g-------------~~~~g~~a~~~~~~~~ 147 (359)
++|++||||++.+.. .|+.|.+|++|.++.|.+.. ... .+...+| ....|+|+||+++|++
T Consensus 81 ~~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~ 159 (376)
T 1e3i_A 81 TNFKPGDKVIPFFAP-QCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEA 159 (376)
T ss_dssp CSCCTTCEEEECSSC-CCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred ccCCCCCEEEECCcC-CCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccc
Confidence 999999999887654 89999999999999998754 100 0111011 1135999999999999
Q ss_pred ceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHH
Q 018246 148 YVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISK 226 (359)
Q Consensus 148 ~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~ 226 (359)
.++++|+++++++|+++++++.|||+++.....+++|++|||+|+|++|++++|+|+++|+ +|+++++++++++.+ ++
T Consensus 160 ~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~ 238 (376)
T 1e3i_A 160 NLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KA 238 (376)
T ss_dssp GEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HH
T ss_pred cEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HH
Confidence 9999999999999999999999999999877777999999999999999999999999999 899999999999888 89
Q ss_pred cCCcEEecCCC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCCCeeeCHHHHHhcCcEEE
Q 018246 227 LGADAFLVSSD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEKPLEVPIFALVGARRLVG 299 (359)
Q Consensus 227 ~g~~~v~~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~k~~~i~ 299 (359)
+|+++++|+++ . +.+.+++. ++|+|||++|+..++..++++++++ |+++.+|......+++...++.++ ++.
T Consensus 239 lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~ 317 (376)
T 1e3i_A 239 LGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SIN 317 (376)
T ss_dssp TTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEE
T ss_pred hCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEE
Confidence 99999998763 2 33445443 8999999999877689999999999 999999985556678888888888 999
Q ss_pred EeecC---CHHHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 300 GSNVG---GMKETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 300 g~~~~---~~~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
|+... ..++++++++++++|+++ +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus 318 g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~ 376 (376)
T 1e3i_A 318 GTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKS-IRTILTF 376 (376)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred EEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCc-ceEEEeC
Confidence 98754 246799999999999996 445 89999999999999988774 7999874
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-56 Score=414.64 Aligned_cols=341 Identities=23% Similarity=0.334 Sum_probs=289.5
Q ss_pred CCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhh-hhccCCCCCCCCCcccccccEEEEEeCCC
Q 018246 6 ETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLH-CARNEWGVTNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~-~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (359)
-.+.+||++++..+ .+.+++.+++.|+|+++||||||.+++||++|++ .+.|.++ ..+|.++|||++|+|+++|++
T Consensus 4 ~~~~~mka~~~~~~--~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~ 80 (374)
T 1cdo_A 4 GKVIKCKAAVAWEA--NKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG 80 (374)
T ss_dssp TSCEEEEEEEBCST--TSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred CCcceeEEEEEecC--CCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence 34567888776543 3358899999999999999999999999999999 8888765 567899999999999999999
Q ss_pred CCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccc-cccCCCC-------------CCCCccceEEEeeCCceE
Q 018246 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SIDRDGT-------------KTYGGYSDLIVVDQHYVL 150 (359)
Q Consensus 85 v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~~~g~-------------~~~g~~a~~~~~~~~~~~ 150 (359)
|++|++||||++.+.. .|+.|.+|++|.++.|.+.....+ +...+|. ..+|+|+||+++|+++++
T Consensus 81 V~~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~ 159 (374)
T 1cdo_A 81 VTEFQPGEKVIPLFIS-QCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVA 159 (374)
T ss_dssp CCSCCTTCEEEECSSC-CCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred CccCCCCCEEEeCCCC-CCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheE
Confidence 9999999999887654 899999999999999997643211 1100110 135999999999999999
Q ss_pred ECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC
Q 018246 151 RFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA 229 (359)
Q Consensus 151 ~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~ 229 (359)
++|+++++++||++++++.|||+++.....+++|++|||+|+|++|++++|+|+++|+ +|+++++++++++.+ +++|+
T Consensus 160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa 238 (374)
T 1cdo_A 160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA-KVFGA 238 (374)
T ss_dssp ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTC
T ss_pred ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHhCC
Confidence 9999999999999999999999999877777999999999999999999999999999 899999999999888 89999
Q ss_pred cEEecCCC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC-CeeeCHHHHHhcCcEEEEe
Q 018246 230 DAFLVSSD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK-PLEVPIFALVGARRLVGGS 301 (359)
Q Consensus 230 ~~v~~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~ 301 (359)
++++++++ . +.+.+++. ++|+|||++|...++..++++++++ |+++.+|.... ..+++...++.++ ++.|+
T Consensus 239 ~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~ 317 (374)
T 1cdo_A 239 TDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGS 317 (374)
T ss_dssp CEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEEC
T ss_pred ceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEE
Confidence 99998763 1 33444443 8999999999876689999999999 99999998664 5677888888888 99998
Q ss_pred ecC---CHHHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 302 NVG---GMKETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 302 ~~~---~~~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
... ..++++++++++++|+++ +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus 318 ~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~ 374 (374)
T 1cdo_A 318 MFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL 374 (374)
T ss_dssp SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred ecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence 654 246799999999999986 445 89999999999999988775 7999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-57 Score=418.40 Aligned_cols=338 Identities=21% Similarity=0.318 Sum_probs=293.3
Q ss_pred CCCCCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEE
Q 018246 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVT 79 (359)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~ 79 (359)
|+...+++.+||++++..+ .++.+++.+.+.|+|+++||||||.+++||++|++++.|.++ ...+|.++|||++|+|+
T Consensus 18 ~~~~~~m~~~mkA~~~~~~-~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~ 96 (363)
T 3uog_A 18 LYFQSMMSKWMQEWSTETV-APHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVE 96 (363)
T ss_dssp -----CCCSEEEEEEBSCT-TTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEE
T ss_pred eEEeccCchhhEEEEEccC-CCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEE
Confidence 4555677888999998875 567899999999999999999999999999999999998775 45679999999999999
Q ss_pred EeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcc
Q 018246 80 KVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD 159 (359)
Q Consensus 80 ~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~ 159 (359)
++|++|++|++||||++.+. .+|..|. +.|.+..... ...|...+|+|+||+++|+++++++|++++++
T Consensus 97 ~vG~~v~~~~vGDrV~~~~~-------~~c~~g~-~~c~~~~~~~---~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~ 165 (363)
T 3uog_A 97 AVGKSVTRFRPGDRVISTFA-------PGWLDGL-RPGTGRTPAY---ETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAA 165 (363)
T ss_dssp EECTTCCSCCTTCEEEECSS-------TTCCSSS-CCSCSSCCCC---CCTTTTSCCCCBSEEEEEGGGEEECCTTSCHH
T ss_pred EECCCCCCCCCCCEEEEecc-------ccccccc-cccccccccc---cccCcCCCCcceeEEEechHHeEECCCCCCHH
Confidence 99999999999999987653 2678888 8897532110 11244567999999999999999999999999
Q ss_pred ccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-
Q 018246 160 AGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP- 238 (359)
Q Consensus 160 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~- 238 (359)
+||++++++.|||+++.....+++|++|||+|+|++|++++|+|+..|++|+++++++++++.+ +++|+++++|.+..
T Consensus 166 ~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~ 244 (363)
T 3uog_A 166 EASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FALGADHGINRLEED 244 (363)
T ss_dssp HHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCSEEEETTTSC
T ss_pred HHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHcCCCEEEcCCccc
Confidence 9999999999999999877778999999999999999999999999999999999999999888 89999999985433
Q ss_pred --HHHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHH
Q 018246 239 --AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEML 313 (359)
Q Consensus 239 --~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 313 (359)
+.+.++++ ++|+||||+|... +..++++++++|+++.+|...+ ...++...++.|++++.|+.....+++++++
T Consensus 245 ~~~~v~~~~~g~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 323 (363)
T 3uog_A 245 WVERVYALTGDRGADHILEIAGGAG-LGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLV 323 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTSSC-HHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCCHHHHHHHH
Confidence 34555554 8999999999655 9999999999999999998765 3677888888999999999999999999999
Q ss_pred HHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 314 DFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 314 ~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++++++++.+ ++|||+++++||+.+.+++ .||+||++
T Consensus 324 ~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~ 363 (363)
T 3uog_A 324 GAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF 363 (363)
T ss_dssp HHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred HHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence 999999999887 8999999999999999988 89999975
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-56 Score=413.79 Aligned_cols=340 Identities=23% Similarity=0.340 Sum_probs=288.3
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
.|.+||++++..+ .+.+++++++.|+|+++||||||.+++||++|++++.|.++.. +|.++|||++|+|+++|++|+
T Consensus 5 ~~~~mkA~~~~~~--g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~P~v~GhE~~G~V~~vG~~v~ 81 (374)
T 2jhf_A 5 KVIKCKAAVLWEE--KKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP-LPVIAGHEAAGIVESIGEGVT 81 (374)
T ss_dssp SCEEEEEEEBCST--TSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-SSBCCCCSEEEEEEEECTTCC
T ss_pred CceeEEEEEEecC--CCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCCC-CCcccCcCceEEEEEECCCCC
Confidence 4566888776543 3358899999999999999999999999999999999876533 789999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccc-cccCC-------------CCCCCCccceEEEeeCCceEEC
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SIDRD-------------GTKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~~~-------------g~~~~g~~a~~~~~~~~~~~~l 152 (359)
+|++||||++.+.. .|+.|.+|++|.++.|.+.....+ +...+ +...+|+|+||+++|+++++++
T Consensus 82 ~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i 160 (374)
T 2jhf_A 82 TVRPGDKVIPLFTP-QCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKI 160 (374)
T ss_dssp SCCTTCEEEECSSC-CCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred CCCCCCEEEECCCC-CCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEEC
Confidence 99999999887654 899999999999999998643211 11000 1123599999999999999999
Q ss_pred CCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcE
Q 018246 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 153 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
|+++++++|+++++++.|||+++.....+++|++|||+|+|++|++++|+|+++|+ +|+++++++++++.+ +++|+++
T Consensus 161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~ 239 (374)
T 2jhf_A 161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEVGATE 239 (374)
T ss_dssp CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSE
T ss_pred CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCce
Confidence 99999999999999999999999877777999999999999999999999999999 899999999999888 8999999
Q ss_pred EecCCC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEee
Q 018246 232 FLVSSD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSN 302 (359)
Q Consensus 232 v~~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~ 302 (359)
++|+++ . +.+.+++. ++|+|||++|...++..++++++++ |+++.+|.... ..+++...++.++ ++.|+.
T Consensus 240 vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~ 318 (374)
T 2jhf_A 240 CVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAI 318 (374)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred EecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEec
Confidence 998763 1 33445543 8999999999877689999999999 99999997653 4677777888888 999987
Q ss_pred cCC---HHHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 303 VGG---MKETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 303 ~~~---~~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
... .++++++++++++|+++ +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus 319 ~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~ 374 (374)
T 2jhf_A 319 FGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF 374 (374)
T ss_dssp GGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred cCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence 542 46799999999999986 345 89999999999999988774 7999874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-56 Score=416.39 Aligned_cols=341 Identities=23% Similarity=0.309 Sum_probs=289.1
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
.|.+||++++.. ..+.+++++++.|+|+++||+|||++++||++|++++.|.++...+|.++|||++|+|+++|++|+
T Consensus 3 ~p~~mkA~~~~~--~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~ 80 (373)
T 2fzw_A 3 EVIKCKAAVAWE--AGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVT 80 (373)
T ss_dssp CCEEEEEEEBCS--TTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCC
T ss_pred CccceEEEEEec--CCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCC
Confidence 345678777654 333588999999999999999999999999999999998766556799999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccc-cccC-------------CCCCCCCccceEEEeeCCceEEC
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SIDR-------------DGTKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~~-------------~g~~~~g~~a~~~~~~~~~~~~l 152 (359)
+|++||||++.+.. .|+.|.+|+.|.++.|.+.....+ +... .+...+|+|+||+++|++.++++
T Consensus 81 ~~~vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i 159 (373)
T 2fzw_A 81 KLKAGDTVIPLYIP-QCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI 159 (373)
T ss_dssp SCCTTCEEEECSSC-CCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred CCCCCCEEEECCCC-CCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEEC
Confidence 99999999887654 899999999999999987532110 0000 01123599999999999999999
Q ss_pred CCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcE
Q 018246 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 153 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|+++
T Consensus 160 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~ 238 (373)
T 2fzw_A 160 DPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEFGATE 238 (373)
T ss_dssp CTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHHTCSE
T ss_pred CCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCCce
Confidence 99999999999999999999999877777999999999999999999999999999 899999999999888 8999999
Q ss_pred EecCCC--H---HHHHHhcC-CccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEee
Q 018246 232 FLVSSD--P---AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSN 302 (359)
Q Consensus 232 v~~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~ 302 (359)
++++++ . +.+.+++. ++|+|||++|...++..++++++++ |+++.+|.... ..+++...++.++ ++.|+.
T Consensus 239 vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~ 317 (373)
T 2fzw_A 239 CINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTA 317 (373)
T ss_dssp EECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred EeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEec
Confidence 998763 1 34455544 8999999999977689999999999 99999997653 4577777777788 999986
Q ss_pred cC---CHHHHHHHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 303 VG---GMKETQEMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 303 ~~---~~~~~~~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.. ..++++++++++++|+++ +.+ ++|||+++++||+.+.+++. +|+||++
T Consensus 318 ~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~ 373 (373)
T 2fzw_A 318 FGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI 373 (373)
T ss_dssp GGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred cCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence 54 256799999999999986 445 89999999999999988775 6999874
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-57 Score=417.63 Aligned_cols=331 Identities=22% Similarity=0.303 Sum_probs=275.3
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhcc-CCC--CCCCCCcccccccEEEEEeCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARN-EWG--VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
.+||++++..++ ..+++.+++.|+|+++||||||.+++||++|++.+.| .++ ...+|.++|||++|+|+++|++|
T Consensus 3 ~~mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v 80 (348)
T 2d8a_A 3 EKMVAIMKTKPG--YGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGV 80 (348)
T ss_dssp CEEEEEEECSSS--SSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTC
T ss_pred CcceEEEEECCC--CCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCC
Confidence 368888876533 2789999999999999999999999999999999988 432 24578999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
++|++||||++.+.. .|+.|.+|++|.++.|.+..+. |...+|+|+||+++|++.++++|+++++++||.+.
T Consensus 81 ~~~~vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~ 152 (348)
T 2d8a_A 81 EGIEVGDYVSVETHI-VCGKCYACRRGQYHVCQNTKIF-------GVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE 152 (348)
T ss_dssp CSCCTTCEEEECCEE-CCSCCC------------CEET-------TTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH
T ss_pred CcCCCCCEEEEcCCC-CCCCChhhhCcCcccCCCCCee-------cCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh
Confidence 999999999887765 8999999999999999986532 33467999999999999999999999999998775
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KV 241 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~ 241 (359)
++.|||+++. ...+ +|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++++.+ .+
T Consensus 153 -~~~ta~~~l~-~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~v 228 (348)
T 2d8a_A 153 -PLGNAVDTVL-AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA-KKVGADYVINPFEEDVVKEV 228 (348)
T ss_dssp -HHHHHHHHHT-TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH-HHHTCSEEECTTTSCHHHHH
T ss_pred -HHHHHHHHHH-hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEECCCCcCHHHHH
Confidence 7789999994 5566 99999999999999999999999999 999999999998888 799999999887643 34
Q ss_pred HHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCH-HHHHhcCcEEEEeecCC-HHHHHHHHHHHH
Q 018246 242 KAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI-FALVGARRLVGGSNVGG-MKETQEMLDFCA 317 (359)
Q Consensus 242 ~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~k~~~i~g~~~~~-~~~~~~~~~~l~ 317 (359)
.++++ ++|+|||++|....+..++++++++|+++.+|.......++. ..++.|++++.|+.... ..++++++++++
T Consensus 229 ~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~ 308 (348)
T 2d8a_A 229 MDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQ 308 (348)
T ss_dssp HHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHH
Confidence 45543 799999999997668999999999999999998766667777 77888999999987766 788999999999
Q ss_pred hCCC--cccE-EEEc-cccHHHHHHHHHcCCccEEEEEEcC
Q 018246 318 KHNI--AADI-ELVR-MDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 318 ~g~i--~~~~-~~~~-l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
+|++ ++.+ ++|| |+++++||+.+.+ ...||+|++++
T Consensus 309 ~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~ 348 (348)
T 2d8a_A 309 SGKLNLDPIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK 348 (348)
T ss_dssp HTCCCCTTTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred cCCCChHHhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence 9996 5666 7999 9999999999977 55799999864
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=417.87 Aligned_cols=338 Identities=20% Similarity=0.323 Sum_probs=288.6
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
.+||++++..+ .+.+++++++.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++|++|
T Consensus 5 ~~mka~~~~~~--g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~ 81 (371)
T 1f8f_A 5 KDIIAAVTPCK--GADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTEL 81 (371)
T ss_dssp EEEEEEEBCST--TCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred ccceEEEEcCC--CCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCC
Confidence 35888876643 23488999999999999999999999999999999998765 4578999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccc-ccc-----c-c---CCC------CCCCCccceEEEeeCCceEEC
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT-YNS-----I-D---RDG------TKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~-~~~-----~-~---~~g------~~~~g~~a~~~~~~~~~~~~l 152 (359)
++||||++.+ ..|+.|.+|++|.++.|.++... +.+ . . .+| ...+|+|+||+++|+++++++
T Consensus 82 ~~GdrV~~~~--~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~i 159 (371)
T 1f8f_A 82 QVGDHVVLSY--GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV 159 (371)
T ss_dssp CTTCEEEECC--CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred CCCCEEEecC--CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEEC
Confidence 9999998877 58999999999999999876421 100 0 0 011 123599999999999999999
Q ss_pred CCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcE
Q 018246 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 153 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
|+++++++|+++++++.|||+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++
T Consensus 160 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~ 238 (371)
T 1f8f_A 160 TKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQLGATH 238 (371)
T ss_dssp CTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHHTCSE
T ss_pred CCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcCCCE
Confidence 99999999999999999999999777777999999999999999999999999999 799999999999888 8999999
Q ss_pred EecCCCHH---HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC
Q 018246 232 FLVSSDPA---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG 305 (359)
Q Consensus 232 v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~ 305 (359)
++++++.+ .+.+++. ++|+|||++|...+++.++++|+++|+++.+|.... ..+++...++.|++++.|+....
T Consensus 239 vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 318 (371)
T 1f8f_A 239 VINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGS 318 (371)
T ss_dssp EEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGG
T ss_pred EecCCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCC
Confidence 99987643 3444444 799999999987768999999999999999997653 45778888889999999987643
Q ss_pred ---HHHHHHHHHHHHhCCCcc--cE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 306 ---MKETQEMLDFCAKHNIAA--DI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 306 ---~~~~~~~~~~l~~g~i~~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
.++++++++++++|++++ .+ + |||+++++||+.+.+++. +|+|+++.
T Consensus 319 ~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~~ 371 (371)
T 1f8f_A 319 GSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKIA 371 (371)
T ss_dssp SCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEECC
T ss_pred CchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEeeC
Confidence 367999999999999975 35 6 999999999999988775 79999863
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=414.61 Aligned_cols=333 Identities=21% Similarity=0.341 Sum_probs=293.1
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+..++.+..+++++.+.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++|+
T Consensus 1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~ 80 (343)
T 2eih_A 1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA 80 (343)
T ss_dssp CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence 67777765554445888999999999999999999999999999999987653 36789999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+. ..|+.|.+|+.|.++.|.+.... |...+|+|+||+++|++.++++|+++++++|+++++++.
T Consensus 81 vGdrV~~~~~-~~cg~c~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ 152 (343)
T 2eih_A 81 PGDEVVINPG-LSCGRCERCLAGEDNLCPRYQIL-------GEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFL 152 (343)
T ss_dssp TTCEEEECCE-ECCSCSHHHHTTCGGGCTTCEET-------TTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHH
T ss_pred CCCEEEECCC-CCcccchhhccCccccccccccc-------CcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHH
Confidence 9999988874 48999999999999999987532 334569999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~ 245 (359)
|||+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|+++++|+++.+ .+.+++
T Consensus 153 ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~-~~~ga~~~~d~~~~~~~~~~~~~~ 231 (343)
T 2eih_A 153 TAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA-KALGADETVNYTHPDWPKEVRRLT 231 (343)
T ss_dssp HHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTSTTHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEcCCcccHHHHHHHHh
Confidence 99999988767799999999997 9999999999999999999999999999888 789999998876643 344444
Q ss_pred C--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc
Q 018246 246 G--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 246 ~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+ ++|++||++|. ..+..++++|+++|+++.+|..... ..++...++.|++++.|+.....++++++++++++|+++
T Consensus 232 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~ 310 (343)
T 2eih_A 232 GGKGADKVVDHTGA-LYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGKLK 310 (343)
T ss_dssp TTTCEEEEEESSCS-SSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCCGGGHHHHHHHHHHTSSC
T ss_pred CCCCceEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCccHHHHHHHHHHHHcCCCC
Confidence 3 79999999994 4599999999999999999986543 346777788899999998877788899999999999999
Q ss_pred ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 323 ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 323 ~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+.+ ++|||+++++||+.+.+++..||+|+++
T Consensus 311 ~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 342 (343)
T 2eih_A 311 PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV 342 (343)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence 887 8999999999999999888789999975
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-57 Score=416.32 Aligned_cols=329 Identities=20% Similarity=0.301 Sum_probs=286.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
||++++..+++ .+++++++.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++|++
T Consensus 1 Mka~~~~~~g~--~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~ 78 (343)
T 2dq4_A 1 MRALAKLAPEE--GLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRR 78 (343)
T ss_dssp CEEEEECSSSS--SCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred CeEEEEeCCCC--cEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCc
Confidence 67777664432 288999999999999999999999999999999988654 3457899999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
|++||||++.+.. .|+.|.+|+.|.++.|.++... |...+|+|+||+++|+++++++|+++++++|+.+ .+
T Consensus 79 ~~vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~ 149 (343)
T 2dq4_A 79 PQVGDHVSLESHI-VCHACPACRTGNYHVCLNTQIL-------GVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EP 149 (343)
T ss_dssp SCTTCEEEECCEE-CCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HH
T ss_pred CCCCCEEEECCCC-CCCCChhhhCcCcccCCCccee-------cCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hH
Confidence 9999999887665 7999999999999999987532 3345699999999999999999999999999877 56
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~ 243 (359)
+.|||+++.....+ +|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++ +++++++++.+ .+.+
T Consensus 150 ~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~l-a~~v~~~~~~~~~~~~~~ 226 (343)
T 2dq4_A 150 FGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFA-RPY-ADRLVNPLEEDLLEVVRR 226 (343)
T ss_dssp HHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGG-TTT-CSEEECTTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-HHhccCcCccCHHHHHHH
Confidence 77999999756667 99999999999999999999999999 999999999998888 788 99999887643 3333
Q ss_pred hcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCH-HHHHhcCcEEEEeecC-CHHHHHHHHHHHHhCC
Q 018246 244 AMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPI-FALVGARRLVGGSNVG-GMKETQEMLDFCAKHN 320 (359)
Q Consensus 244 ~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~k~~~i~g~~~~-~~~~~~~~~~~l~~g~ 320 (359)
+++ ++|+|||++|+...+..++++|+++|+++.+|.......++. ..++.|++++.|+... ...+++++++++++|+
T Consensus 227 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~ 306 (343)
T 2dq4_A 227 VTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGR 306 (343)
T ss_dssp HHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTS
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCC
Confidence 333 899999999996668999999999999999998766678888 7888999999998776 6788999999999999
Q ss_pred C--cccE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 321 I--AADI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 321 i--~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
+ ++.+ ++|||+++++||+.+.+++. ||+|++++
T Consensus 307 ~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~ 342 (343)
T 2dq4_A 307 VDLSPLLTHRLPLSRYREAFGLLASGQA-VKVILDPK 342 (343)
T ss_dssp SCCGGGEEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred CChHHheeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence 5 5666 89999999999999998877 99999875
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-56 Score=412.71 Aligned_cols=331 Identities=23% Similarity=0.332 Sum_probs=285.6
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC-C--CCCCCCcccccccEEEEEeCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW-G--VTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~--~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
+||++++.. ++.+++.+++.|+|+++||+|||.++|||++|++.+.|.. . ...+|.++|||++|+|+++|++|+
T Consensus 7 ~mka~~~~~---~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~ 83 (356)
T 1pl8_A 7 NNLSLVVHG---PGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK 83 (356)
T ss_dssp CCEEEEEEE---TTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred CceEEEEec---CCcEEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence 478877664 4568899999999999999999999999999999887532 1 135689999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCC-CCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
+|++||||++.+.. .|+.|.+|+.|.++.|.+..+. |. ..+|+|+||+++|+++++++|+++++++|+.+
T Consensus 84 ~~~vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~-------g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~- 154 (356)
T 1pl8_A 84 HLKPGDRVAIEPGA-PRENDEFCKMGRYNLSPSIFFC-------ATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI- 154 (356)
T ss_dssp SCCTTCEEEECSEE-CSSCCHHHHTTCGGGCTTCEET-------TBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-
T ss_pred CCCCCCEEEEeccC-CCCCChHHHCcCcccCCCcccc-------CcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-
Confidence 99999999887765 8999999999999999986542 11 24699999999999999999999999998765
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCC---CHHH-
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSS---DPAK- 240 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~---~~~~- 240 (359)
.++.|||+++... .+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|++++++++ ..+.
T Consensus 155 ~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~~~~~~~~~ 232 (356)
T 1pl8_A 155 EPLSVGIHACRRG-GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQISKESPQEIA 232 (356)
T ss_dssp HHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEECSSCCHHHHH
T ss_pred chHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEEEcCcccccchHH
Confidence 5788999999554 45999999999999999999999999999 999999999999888 899999999987 2333
Q ss_pred --HHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHH
Q 018246 241 --VKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCA 317 (359)
Q Consensus 241 --~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~ 317 (359)
+.+.+ +++|+|||++|+..++..++++|+++|+++.+|.......++...++.|++++.|+..+ ..++++++++++
T Consensus 233 ~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~l~~ 311 (356)
T 1pl8_A 233 RKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY-CNTWPVAISMLA 311 (356)
T ss_dssp HHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSC-SSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEEeccc-HHHHHHHHHHHH
Confidence 33333 48999999999987689999999999999999976555678888889999999998765 567999999999
Q ss_pred hCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 318 KHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 318 ~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+|+++ +.+ ++|||+++++||+.+.++ ..||+|++++++
T Consensus 312 ~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~~~ 352 (356)
T 1pl8_A 312 SKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCDPS 352 (356)
T ss_dssp TTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECCTT
T ss_pred cCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCCCC
Confidence 99974 555 899999999999999988 779999999765
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=416.93 Aligned_cols=337 Identities=18% Similarity=0.240 Sum_probs=284.6
Q ss_pred CCCCCCCCcccceeeeeecCCCCCccceeeecC--------CCCCCeEEEEEeeeecchhhhhhhccCC-C--CCCCCCc
Q 018246 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRR--------ETGADDVTIKILFCGICHSDLHCARNEW-G--VTNYPIV 69 (359)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~--~~~~p~~ 69 (359)
|+++ ++.+|+++.+. .++.+++.+++.| +|+++||||||++++||++|++++.+.. + ...+|.+
T Consensus 1 m~~~--~~~~mka~~~~---~~~~l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v 75 (363)
T 3m6i_A 1 MASS--ASKTNIGVFTN---PQHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHV 75 (363)
T ss_dssp ------CCSCCEEEEEC---TTCCEEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEE
T ss_pred CCCC--CcccceeEEEe---CCCcEEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcc
Confidence 6654 45568887755 5667999999999 9999999999999999999999887432 2 2456899
Q ss_pred ccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCce
Q 018246 70 PGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYV 149 (359)
Q Consensus 70 ~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~ 149 (359)
+|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+.|.++.|.+..+... ...+|+|+||+++|++++
T Consensus 76 ~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~c~~g~~~~c~~~~~~g~------~~~~G~~aey~~v~~~~~ 148 (363)
T 3m6i_A 76 LGHESAGEVIAVHPSVKSIKVGDRVAIEPQV-ICNACEPCLTGRYNGCERVDFLST------PPVPGLLRRYVNHPAVWC 148 (363)
T ss_dssp CCCEEEEEEEEECTTCCSCCTTCEEEECCEE-CCSCSHHHHTTCGGGCTTCEETTS------TTSCCSCBSEEEEEGGGE
T ss_pred cCcceEEEEEEECCCCCCCCCCCEEEEeccc-CCCCCHHHHCcCcccCCCccccCC------CCCCccceeEEEEehhhE
Confidence 9999999999999999999999999887764 999999999999999998754321 125699999999999999
Q ss_pred EECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcC
Q 018246 150 LRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLG 228 (359)
Q Consensus 150 ~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g 228 (359)
+++|+ +++++||.+ .++.|||+++.... +++|++|||+|+|++|++++|+|+..|++ |+++++++++++.+ +++
T Consensus 149 ~~iP~-~s~~~aa~~-~~~~ta~~~l~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l- 223 (363)
T 3m6i_A 149 HKIGN-MSYENGAML-EPLSVALAGLQRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA-KEI- 223 (363)
T ss_dssp EECTT-CCHHHHHHH-HHHHHHHHHHHHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HHH-
T ss_pred EECCC-CCHHHHHhh-hHHHHHHHHHHHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-
Confidence 99999 999999977 57889999995555 59999999999999999999999999996 99999999999888 777
Q ss_pred CcEEecCC----C-HH---HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEE
Q 018246 229 ADAFLVSS----D-PA---KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLV 298 (359)
Q Consensus 229 ~~~v~~~~----~-~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i 298 (359)
++++++++ + .+ .+.++++ ++|+|||++|+..+++.++++|+++|+++.+|.......++...++.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i 303 (363)
T 3m6i_A 224 CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDL 303 (363)
T ss_dssp CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEE
T ss_pred chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEE
Confidence 54444332 2 22 3444443 8999999999987689999999999999999987777778888999999999
Q ss_pred EEeecCCHHHHHHHHHHHHhCCC--cccE-EEEccccHHHHHHHHHcC-CccEEEEEEcCC
Q 018246 299 GGSNVGGMKETQEMLDFCAKHNI--AADI-ELVRMDQINTAMERLAKS-DVKYRFVIDVGN 355 (359)
Q Consensus 299 ~g~~~~~~~~~~~~~~~l~~g~i--~~~~-~~~~l~~~~~a~~~~~~~-~~~gkvvv~~~~ 355 (359)
.++..+ .++++++++++++|++ ++.+ ++|||+++++||+.+.++ ...+|+|++.++
T Consensus 304 ~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 363 (363)
T 3m6i_A 304 QFQYRY-CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE 363 (363)
T ss_dssp EECCSC-SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred EEccCC-HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence 998876 6789999999999999 5556 899999999999999987 566999999864
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=417.17 Aligned_cols=343 Identities=22% Similarity=0.316 Sum_probs=292.7
Q ss_pred CCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCC
Q 018246 5 PETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~ 84 (359)
.+|..+||++++..++ +.+++++++.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++| +
T Consensus 12 ~~~~~~mka~~~~~~g--~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~ 88 (380)
T 1vj0_A 12 HMMGLKAHAMVLEKFN--QPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-G 88 (380)
T ss_dssp --CCEEEEEEEBCSTT--SCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-S
T ss_pred hHhhhheEEEEEecCC--CCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-C
Confidence 3566778888876543 479999999999999999999999999999999999876545678999999999999999 9
Q ss_pred CC------CCCCCCEEEEeccccCCCCCcccc-CCCCCCCcccccccc-cccCCCCCCCCccceEEEe-eCCceEECCCC
Q 018246 85 VS------KFKEGDKVGVGVLVASCQKCESCQ-QGLENYCPNMILTYN-SIDRDGTKTYGGYSDLIVV-DQHYVLRFPDN 155 (359)
Q Consensus 85 v~------~~~vGdrV~v~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~-~~~~~g~~~~g~~a~~~~~-~~~~~~~lp~~ 155 (359)
|+ +|++||||++.+.. .|+.|.+|+ .|.++.|.+..+... .........+|+|+||+++ |++.++++|++
T Consensus 89 V~~~~~~~~~~vGdrV~~~~~~-~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~ 167 (380)
T 1vj0_A 89 EKRDLNGELLKPGDLIVWNRGI-TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEK 167 (380)
T ss_dssp CCBCTTSCBCCTTCEEEECSEE-CCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTT
T ss_pred ccccccCCCCCCCCEEEEcccC-CCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCC
Confidence 99 99999999887765 799999999 999999998643210 0000001346999999999 99999999999
Q ss_pred CCcc-ccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEe
Q 018246 156 MPLD-AGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFL 233 (359)
Q Consensus 156 l~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~ 233 (359)
++++ +|+.+. ++.|||+++.....+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++
T Consensus 168 l~~~~~Aa~~~-~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi 245 (380)
T 1vj0_A 168 DDLDVLAMAMC-SGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIGADLTL 245 (380)
T ss_dssp SCHHHHHHHTT-HHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTTCSEEE
T ss_pred CChHHhHhhhc-HHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH-HHcCCcEEE
Confidence 9999 555555 899999999665416999999999999999999999999995 999999999999888 799999999
Q ss_pred cCC---CHH---HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCC-C-CeeeCHHH-HHhcCcEEEEee
Q 018246 234 VSS---DPA---KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-K-PLEVPIFA-LVGARRLVGGSN 302 (359)
Q Consensus 234 ~~~---~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~~~~-~~~k~~~i~g~~ 302 (359)
+++ +.+ .+.++++ ++|+|||++|+...+..++++|+++|+++.+|... + ..+++... ++.|++++.|+.
T Consensus 246 ~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~ 325 (380)
T 1vj0_A 246 NRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIW 325 (380)
T ss_dssp ETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECC
T ss_pred eccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEee
Confidence 987 443 3444443 79999999998766999999999999999999876 5 67788888 889999999998
Q ss_pred cCCHHHHHHHHHHHHh--CCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 303 VGGMKETQEMLDFCAK--HNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 303 ~~~~~~~~~~~~~l~~--g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
.....+++++++++++ |++++.+ ++|||+++++||+.+.+++.. |+||+++
T Consensus 326 ~~~~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~~ 379 (380)
T 1vj0_A 326 VSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-KVILYPE 379 (380)
T ss_dssp CCCHHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-CEEEECC
T ss_pred cCCHHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-eEEEEeC
Confidence 8888999999999999 9998776 899999999999999988888 9999875
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-56 Score=410.09 Aligned_cols=331 Identities=24% Similarity=0.365 Sum_probs=285.3
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhcc-CCC--CCCCCCcccccccEEEEEeCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARN-EWG--VTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g-~~~--~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
+||++.+.. ++.+++++.+.|+|+++||||||.+++||++|++.+.+ .++ ...+|.++|||++|+|+++|++|+
T Consensus 4 ~mka~~~~~---~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~ 80 (352)
T 1e3j_A 4 DNLSAVLYK---QNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK 80 (352)
T ss_dssp CCEEEEEEE---TTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred cCEEEEEEc---CCcEEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence 488888764 45688999999999999999999999999999998874 332 135689999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCC-CCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
+|++||||++.+.. .|+.|.+|+.|.++.|.+..+. |. ..+|+|+||+++|+++++++|+++++++|+.+
T Consensus 81 ~~~vGdrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~-------g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~- 151 (352)
T 1e3j_A 81 HLKKGDRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFC-------ATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL- 151 (352)
T ss_dssp SCCTTCEEEECCEE-CCSSSHHHHTTCGGGCTTCEET-------TBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-
T ss_pred CCCCCCEEEEcCcC-CCCCChhhhCcCcccCCCCccc-------CcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-
Confidence 99999999887654 8999999999999999986542 11 24699999999999999999999999998865
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-H---HHH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD-P---AKV 241 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~---~~~ 241 (359)
.++.|||+++... .+++|++|||+|+|++|++++|+|+.+|++|+++++++++++.+ +++|+++++++++ . +.+
T Consensus 152 ~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~i 229 (352)
T 1e3j_A 152 EPLSVGVHACRRA-GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVVDPAKEEESSI 229 (352)
T ss_dssp HHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEECCTTTSCHHHH
T ss_pred chHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHhCCCEEEcCcccccHHHHH
Confidence 5788999999554 45999999999999999999999999999999999999999888 8999999998764 3 334
Q ss_pred HHhc-----CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHH
Q 018246 242 KAAM-----GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFC 316 (359)
Q Consensus 242 ~~~~-----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l 316 (359)
.+.+ +++|++||++|+..+++.++++++++|+++.+|.......++...++.|++++.|+..+ ..+++++++++
T Consensus 230 ~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~l~ 308 (352)
T 1e3j_A 230 IERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRY-CNDYPIALEMV 308 (352)
T ss_dssp HHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSC-SSCHHHHHHHH
T ss_pred HHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEEeccc-hHHHHHHHHHH
Confidence 4433 37999999999987689999999999999999976555677888889999999998765 56799999999
Q ss_pred HhCCCc--ccE-EEEccccHHHHHHHHHcCC-ccEEEEEEcCC
Q 018246 317 AKHNIA--ADI-ELVRMDQINTAMERLAKSD-VKYRFVIDVGN 355 (359)
Q Consensus 317 ~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~-~~gkvvv~~~~ 355 (359)
++|+++ +.+ ++|||+++++||+.+.+++ ..||+|+++++
T Consensus 309 ~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~ 351 (352)
T 1e3j_A 309 ASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ 351 (352)
T ss_dssp HTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred HcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 999974 555 8999999999999999887 57999998864
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-56 Score=411.21 Aligned_cols=329 Identities=26% Similarity=0.413 Sum_probs=289.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC--------CCCCCCcccccccEEEEEeC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG--------VTNYPIVPGHEIVGTVTKVG 82 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~~G~V~~vG 82 (359)
||++.+..++ +.+++.+++.|+|+++||||||.+++||++|++++.|.++ ...+|.++|||++|+|+++|
T Consensus 1 Mka~~~~~~g--~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG 78 (347)
T 1jvb_A 1 MRAVRLVEIG--KPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG 78 (347)
T ss_dssp CEEEEECSTT--SCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEEC
T ss_pred CeEEEEecCC--CCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEEC
Confidence 5777666432 3588999999999999999999999999999999988654 24678999999999999999
Q ss_pred CCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeC-CceEECCCCCCcccc
Q 018246 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQ-HYVLRFPDNMPLDAG 161 (359)
Q Consensus 83 ~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~-~~~~~lp~~l~~~~a 161 (359)
++|++|++||||+..+. ..|+.|.+|+.|.++.|.+.... |...+|+|+||+++|+ +.++++ +++++++|
T Consensus 79 ~~v~~~~vGdrV~~~~~-~~Cg~C~~C~~g~~~~C~~~~~~-------G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~a 149 (347)
T 1jvb_A 79 DEVVGYSKGDLVAVNPW-QGEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYMYKL-RRLNAVEA 149 (347)
T ss_dssp TTCCSCCTTCEEEECCE-ECCSSSHHHHTTCGGGCSSCEEB-------TTTBCCSSBSEEEESCGGGEEEC-SSSCHHHH
T ss_pred CCCCCCCCCCEEEeCCC-CCCCCChhhhCcCcccCcccccc-------cccCCCcceeEEEecCccceEEe-CCCCHHHc
Confidence 99999999999966554 48999999999999999986432 3346799999999999 999999 99999999
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
+++++++.|||+++.. ..+++|++|||+|+| ++|++++|+++.. |++|+++++++++.+.+ +++|+++++++++.+
T Consensus 150 a~l~~~~~ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 227 (347)
T 1jvb_A 150 APLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVINASMQD 227 (347)
T ss_dssp GGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEEETTTSC
T ss_pred ccchhhHHHHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhCCCEEecCCCcc
Confidence 9999999999999976 556999999999985 9999999999999 99999999999998888 789999999877643
Q ss_pred H---HHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCC-CCeeeCHHHHHhcCcEEEEeecCCHHHHHHHH
Q 018246 240 K---VKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGGMKETQEML 313 (359)
Q Consensus 240 ~---~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 313 (359)
. +.+++ +++|++||++|+...++.++++++++|+++.+|... .. +++...++.|++++.|+.....+++++++
T Consensus 228 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 306 (347)
T 1jvb_A 228 PLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGNQSDFLGIM 306 (347)
T ss_dssp HHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccCHHHHHHHH
Confidence 3 45555 489999999999866899999999999999999866 45 77888888999999999988889999999
Q ss_pred HHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 314 DFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 314 ~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++++|++++.+ ++|||+++++||+.+.+++..||+|+++
T Consensus 307 ~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 347 (347)
T 1jvb_A 307 RLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347 (347)
T ss_dssp HHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence 999999998877 8999999999999999988889999874
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=405.43 Aligned_cols=328 Identities=22% Similarity=0.330 Sum_probs=281.0
Q ss_pred cceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++. .++.++++++|.|++ +||||||||+++|||++|++.+.|..+ ..+|+++|||++|+|+++|++|++++
T Consensus 1 MkAvv~~---~~g~l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~ 76 (346)
T 4a2c_A 1 MKSVVND---TDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLH 76 (346)
T ss_dssp CEEEEEC---SSSCEEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred CCEEEEe---cCCCEEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCccccc
Confidence 7787755 456799999999984 799999999999999999999988755 56799999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+.. .|+.|.+|+.|.++.|.+..+. |...+|+|+||+++|+++++++|+++++++||++.. +.
T Consensus 77 ~GdrV~~~~~~-~~g~c~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~-~~ 147 (346)
T 4a2c_A 77 PGDAVACVPLL-PCFTCPECLKGFYSQCAKYDFI-------GSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEP-IT 147 (346)
T ss_dssp TTCEEEECCEE-CCSCSHHHHTTCGGGCSSCEEB-------TTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHH-HH
T ss_pred CCCeEEeeecc-CCCCcccccCCccccCCCcccc-------cCCCCcccccccccchheEEECCCCCCHHHHHhchH-HH
Confidence 99999877655 8999999999999999987654 456779999999999999999999999999987653 34
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAM 245 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~ 245 (359)
++++++. ...+++|++|||+|+|++|++++|+|+++|+ .+++++++++|++.+ +++|+++++|+++.+ .+..++
T Consensus 148 ~~~~~~~-~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~~lGa~~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 148 VGLHAFH-LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HHHHHHH-HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHG
T ss_pred HHHHHHH-HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHH-HHcCCeEEEeCCCCCHHHHHHhhc
Confidence 4455554 4455999999999999999999999999999 567888999998888 899999999987743 344444
Q ss_pred --CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeee---CHHHHHhcCcEEEEeecC-----CHHHHHHHHHH
Q 018246 246 --GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEV---PIFALVGARRLVGGSNVG-----GMKETQEMLDF 315 (359)
Q Consensus 246 --~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~~k~~~i~g~~~~-----~~~~~~~~~~~ 315 (359)
.++|+|+|++|...+++.++++++++|+++.+|.......+ ++..++.|++++.|+... ..+++++++++
T Consensus 226 ~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l 305 (346)
T 4a2c_A 226 ELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRL 305 (346)
T ss_dssp GGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHH
T ss_pred ccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHH
Confidence 38999999999988899999999999999999987765544 445678899999997653 24679999999
Q ss_pred HHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 316 CAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 316 l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
+++|+++ +.+ ++|||+++++||+.+.+++..||+||.+
T Consensus 306 ~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P 346 (346)
T 4a2c_A 306 LTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346 (346)
T ss_dssp HHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred HHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence 9999985 445 8999999999999999999889999863
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-55 Score=404.56 Aligned_cols=333 Identities=18% Similarity=0.301 Sum_probs=283.0
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhh-hhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLH-CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~-~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..+ +.+++.+++.|+|+++||+|||++++||++|++ ++.|.++ ..+|.++|||++|+|+++|++|++|+
T Consensus 1 MkA~~~~~~---~~~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~ 76 (352)
T 3fpc_A 1 MKGFAMLSI---GKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFK 76 (352)
T ss_dssp CEEEEEEET---TEEEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCC
T ss_pred CeEEEEccC---CCceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCC
Confidence 677776643 448889999999999999999999999999999 5677665 45789999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCC--ceEECCCCCCccccccccch
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQH--YVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~--~~~~lp~~l~~~~aa~l~~~ 167 (359)
+||||++.+.. .|+.|.+|+.|.++.|.+....+. .+...+|+|+||+++|+. .++++|+++++++|++++++
T Consensus 77 vGdrV~~~~~~-~c~~c~~c~~g~~~~~~~~~~~~~----~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~ 151 (352)
T 3fpc_A 77 PGDRVVVPAIT-PDWRTSEVQRGYHQHSGGMLAGWK----FSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDM 151 (352)
T ss_dssp TTCEEEECSBC-CCSSSHHHHTTCGGGTTSTTTTBC----BTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTH
T ss_pred CCCEEEEcccc-CCCCchhhcCCCcCCccccccccc----cccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccch
Confidence 99999887655 899999999999999976532211 134567999999999976 89999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHH
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKA 243 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~ 243 (359)
+.|||+++.. ..+++|++|||+|+|++|++++|+|++.|+ +|+++++++++++.+ +++|+++++++++.+ .+.+
T Consensus 152 ~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~v~~ 229 (352)
T 3fpc_A 152 MTTGFHGAEL-ANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEYGATDIINYKNGDIVEQILK 229 (352)
T ss_dssp HHHHHHHHHH-TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHHTCCEEECGGGSCHHHHHHH
T ss_pred hHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhCCceEEcCCCcCHHHHHHH
Confidence 9999999954 455999999999999999999999999999 899999999998888 899999999886643 4455
Q ss_pred hcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC--eeeCHH--HHHhcCcEEEEeecCC-HHHHHHHHHHH
Q 018246 244 AMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP--LEVPIF--ALVGARRLVGGSNVGG-MKETQEMLDFC 316 (359)
Q Consensus 244 ~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~--~~~~k~~~i~g~~~~~-~~~~~~~~~~l 316 (359)
+++ ++|+|||++|++.+++.++++|+++|+++.+|..... .+++.. .+..+++++.++.... ..+++++++++
T Consensus 230 ~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~ 309 (352)
T 3fpc_A 230 ATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLV 309 (352)
T ss_dssp HTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHH
T ss_pred HcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHH
Confidence 554 7999999999976699999999999999999976543 333332 2345789999987643 67899999999
Q ss_pred HhCCCccc--E-EEEc-cccHHHHHHHHHcCCcc-EEEEEEcC
Q 018246 317 AKHNIAAD--I-ELVR-MDQINTAMERLAKSDVK-YRFVIDVG 354 (359)
Q Consensus 317 ~~g~i~~~--~-~~~~-l~~~~~a~~~~~~~~~~-gkvvv~~~ 354 (359)
++|++++. + ++|+ |+++++||+.+.+++.. +|+|++++
T Consensus 310 ~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~ 352 (352)
T 3fpc_A 310 FYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA 352 (352)
T ss_dssp HTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred HcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence 99999763 4 8999 99999999999987654 89999874
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-55 Score=412.60 Aligned_cols=321 Identities=21% Similarity=0.346 Sum_probs=279.8
Q ss_pred CccceeeecCC-CCCCeEEEEEeeeecchhhhhhhccCCC-------CCCCCCcccccccEEEEEeCCCC------CCCC
Q 018246 24 TFSPFHFSRRE-TGADDVTIKILFCGICHSDLHCARNEWG-------VTNYPIVPGHEIVGTVTKVGNNV------SKFK 89 (359)
Q Consensus 24 ~~~~~~~~~~~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~-------~~~~p~~~G~e~~G~V~~vG~~v------~~~~ 89 (359)
.+++.+++.|+ |+++||||||.+++||++|++++.|... ...+|.++|||++|+|+++|++| ++|+
T Consensus 41 ~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~ 120 (404)
T 3ip1_A 41 EVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFE 120 (404)
T ss_dssp EEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECC
T ss_pred ceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCC
Confidence 68889999999 9999999999999999999999886421 24678999999999999999999 8999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCc------ccccc
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPL------DAGAP 163 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~------~~aa~ 163 (359)
+||||++.+.. .|+.|.+|+.|.++.|.+.... |...+|+|+||+++|++.++++|+++++ .++++
T Consensus 121 vGdrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~ 192 (404)
T 3ip1_A 121 IGEPVCAEEML-WCGHCRPCAEGFPNHCENLNEL-------GFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGS 192 (404)
T ss_dssp TTCEEEECSEE-CCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHH
T ss_pred CCCEEEECCcc-CCCCCHHHHCcCcccCcccccc-------CCCCCCCCcceEEechHHeEeccccccccccccchhHHh
Confidence 99999887765 8999999999999999987543 4456799999999999999999998864 44889
Q ss_pred ccchhhhhhhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHH--
Q 018246 164 LLCAGITVYSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPA-- 239 (359)
Q Consensus 164 l~~~~~ta~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~-- 239 (359)
++.++.|||+++... ..+++|++|||+|+|++|++++|+|+..|+ +|+++++++++++.+ +++|+++++++++.+
T Consensus 193 l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~ 271 (404)
T 3ip1_A 193 LVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELGADHVIDPTKENFV 271 (404)
T ss_dssp THHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHTCSEEECTTTSCHH
T ss_pred hhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcCCCEEEcCCCCCHH
Confidence 999999999999754 367999999999999999999999999999 999999999999888 899999999987653
Q ss_pred -HHHHhcC--CccEEEECCCCh-hhHHHHHhcc----ccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC-HHHHH
Q 018246 240 -KVKAAMG--TMDYIIDTVSAV-HSLAPLLGLL----KVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG-MKETQ 310 (359)
Q Consensus 240 -~~~~~~~--~~d~vid~~g~~-~~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~-~~~~~ 310 (359)
.+.++++ ++|+|||++|+. .++..++++| +++|+++.+|...+..+++...++.+++++.|+.... ..+++
T Consensus 272 ~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 351 (404)
T 3ip1_A 272 EAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFP 351 (404)
T ss_dssp HHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCSTTHHH
T ss_pred HHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCchHHHH
Confidence 4555554 799999999998 2466777777 9999999999988778899999999999999988654 67899
Q ss_pred HHHHHHHhCCCc--ccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCCcC
Q 018246 311 EMLDFCAKHNIA--ADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358 (359)
Q Consensus 311 ~~~~~l~~g~i~--~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~~ 358 (359)
++++++++| ++ +.+ ++|||+++++||+.+. .||+||+++++.+
T Consensus 352 ~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~~~~~ 397 (404)
T 3ip1_A 352 RVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVTMLNE 397 (404)
T ss_dssp HHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEEEECC
T ss_pred HHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecCCCCC
Confidence 999999999 75 344 8999999999999887 5789988877543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-54 Score=411.06 Aligned_cols=339 Identities=17% Similarity=0.231 Sum_probs=294.7
Q ss_pred CCcccceeeeeecC-------------CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccC-------------
Q 018246 7 TEHPQKAIGWAARD-------------NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNE------------- 60 (359)
Q Consensus 7 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~------------- 60 (359)
.|.+||++++...+ .++.+++++++.|+|+++||||||.+++||++|++...+.
T Consensus 27 iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~ 106 (456)
T 3krt_A 27 LPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGR 106 (456)
T ss_dssp CCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHT
T ss_pred CCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhccc
Confidence 67789999888541 1356889999999999999999999999999998764321
Q ss_pred CC----CCCCC-CcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCC-CC
Q 018246 61 WG----VTNYP-IVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KT 134 (359)
Q Consensus 61 ~~----~~~~p-~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ 134 (359)
.. ...+| .++|||++|+|+++|++|++|++||||++.+. .|..|..|..+.++.|.+.... |. ..
T Consensus 107 ~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~--~c~~~~~~~~~~~~~c~~~~~~-------G~~~~ 177 (456)
T 3krt_A 107 VSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL--SVELESSDGHNDTMLDPEQRIW-------GFETN 177 (456)
T ss_dssp SCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE--ECCCCSGGGTTSGGGCTTCEET-------TTTSS
T ss_pred cccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC--cccccccccccccccCcccccc-------ccCCC
Confidence 11 12456 68999999999999999999999999988654 7899999999999999887543 22 23
Q ss_pred CCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhc--CCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEE
Q 018246 135 YGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYY--GMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVT 211 (359)
Q Consensus 135 ~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~ 211 (359)
+|+|+||+++|+++++++|+++++++||++++++.|||+++... ..+++|++|||+|+ |++|++++|+|+..|++|+
T Consensus 178 ~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi 257 (456)
T 3krt_A 178 FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPI 257 (456)
T ss_dssp SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEE
Confidence 59999999999999999999999999999999999999999764 66799999999997 9999999999999999999
Q ss_pred EEeCChhhHHHHHHHcCCcEEecCCCH--------------------HHHHHhcC--CccEEEECCCChhhHHHHHhccc
Q 018246 212 VISTSPKKESEAISKLGADAFLVSSDP--------------------AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLK 269 (359)
Q Consensus 212 ~v~~~~~~~~~~~~~~g~~~v~~~~~~--------------------~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~ 269 (359)
++++++++++.+ +++|+++++++.+. +.+.++++ ++|+|||++|+.. +..++++++
T Consensus 258 ~~~~~~~~~~~~-~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~-~~~~~~~l~ 335 (456)
T 3krt_A 258 CVVSSPQKAEIC-RAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRET-FGASVFVTR 335 (456)
T ss_dssp EEESSHHHHHHH-HHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHH-HHHHHHHEE
T ss_pred EEECCHHHHHHH-HhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchh-HHHHHHHhh
Confidence 999999999888 89999999987653 34455553 8999999999954 999999999
Q ss_pred cCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccE
Q 018246 270 VNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKY 347 (359)
Q Consensus 270 ~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~g 347 (359)
++|+++.+|...+ ...++...++.+++++.|+...+..++.++++++++|++++.+ ++|||+++++||+.+.+++..|
T Consensus 336 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~G 415 (456)
T 3krt_A 336 KGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQG 415 (456)
T ss_dssp EEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSS
T ss_pred CCcEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCC
Confidence 9999999998765 4577888888999999999999999999999999999999887 8999999999999999999999
Q ss_pred EEEEEcCCC
Q 018246 348 RFVIDVGNS 356 (359)
Q Consensus 348 kvvv~~~~~ 356 (359)
|+||.+.++
T Consensus 416 Kvvv~~~~~ 424 (456)
T 3krt_A 416 KVGVLCLAP 424 (456)
T ss_dssp EEEEESSCS
T ss_pred cEEEEeCCC
Confidence 999998764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=408.12 Aligned_cols=339 Identities=20% Similarity=0.280 Sum_probs=286.2
Q ss_pred ccceeeeeecCCCCCccceeeecCCC-CC-----CeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRET-GA-----DDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 83 (359)
+||++++.. ++.+++.+++.|+| ++ +||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|+
T Consensus 2 ~MkA~~~~~---~~~l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~ 77 (398)
T 2dph_A 2 GNKSVVYHG---TRDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGS 77 (398)
T ss_dssp CEEEEEEEE---TTEEEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECT
T ss_pred ccEEEEEEc---CCCEEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECC
Confidence 588888764 35688999999987 68 9999999999999999999998653 45789999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccc-cccCCCC---CCCCccceEEEeeCC--ceEECCCCCC
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN-SIDRDGT---KTYGGYSDLIVVDQH--YVLRFPDNMP 157 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~-~~~~~g~---~~~g~~a~~~~~~~~--~~~~lp~~l~ 157 (359)
+|++|++||||++.+.. .|+.|.+|++|.++.|.+...... .....|. ..+|+|+||+++|++ .++++|++++
T Consensus 78 ~v~~~~vGDrV~~~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~ 156 (398)
T 2dph_A 78 DVELMDIGDLVSVPFNV-ACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQ 156 (398)
T ss_dssp TCCSCCTTCEEECCSBC-CCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHH
T ss_pred CCCCCCCCCEEEEcCCC-CCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCC
Confidence 99999999999877655 899999999999999987211000 0000111 246999999999987 8999999999
Q ss_pred ccc----cccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEE
Q 018246 158 LDA----GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAF 232 (359)
Q Consensus 158 ~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v 232 (359)
+++ ++++++++.|||+++. ...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|++ +
T Consensus 157 ~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~-~ 233 (398)
T 2dph_A 157 AMEKIKDLTLISDILPTGFHGCV-SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLL-SDAGFE-T 233 (398)
T ss_dssp HHHTHHHHTTTTTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HTTTCE-E
T ss_pred hhhhcchhhhhcCHHHHHHHHHH-HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH-HHcCCc-E
Confidence 998 8999999999999995 4556999999999999999999999999999 999999999999888 899995 7
Q ss_pred ecCCCH----HHHHHhcC--CccEEEECCCChh--------------hHHHHHhccccCCEEEEecCC------------
Q 018246 233 LVSSDP----AKVKAAMG--TMDYIIDTVSAVH--------------SLAPLLGLLKVNGKLVTVGLP------------ 280 (359)
Q Consensus 233 ~~~~~~----~~~~~~~~--~~d~vid~~g~~~--------------~~~~~~~~l~~~G~~v~~g~~------------ 280 (359)
+++++. +.+.++++ ++|+|||++|+.. +++.++++|+++|+++.+|..
T Consensus 234 i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~ 313 (398)
T 2dph_A 234 IDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDA 313 (398)
T ss_dssp EETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHH
T ss_pred EcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccc
Confidence 887653 33445554 7999999999752 589999999999999999976
Q ss_pred -CCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc--c--cE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 281 -EKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA--A--DI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 281 -~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~--~--~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
.....++...++.|++++.++......+++++++++++|+++ + .+ ++|||+++++||+.+.+++. ||+|++++
T Consensus 314 ~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvv~~~ 392 (398)
T 2dph_A 314 GSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP-AKFVIDPH 392 (398)
T ss_dssp HTTEEEEEHHHHHHTTCEEECSSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTCS-CEEEECTT
T ss_pred cCCcccccHHHHhhcCCEEEEeccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCCc-eEEEEecC
Confidence 234567777888999999998776677899999999999998 6 33 89999999999999998887 99999987
Q ss_pred CCc
Q 018246 355 NSK 357 (359)
Q Consensus 355 ~~~ 357 (359)
...
T Consensus 393 ~~~ 395 (398)
T 2dph_A 393 GML 395 (398)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=403.43 Aligned_cols=327 Identities=18% Similarity=0.204 Sum_probs=280.0
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCC---CCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNY---PIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~---p~~~G~e~~G~V~~vG~~v~~ 87 (359)
||++++..++ ..+++++++.|+|+++||||||.+++||++|++++.|.++...+ |.++|||++| |+++|++ ++
T Consensus 1 MkA~~~~~~~--~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~ 76 (357)
T 2b5w_A 1 MKAIAVKRGE--DRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TE 76 (357)
T ss_dssp CEEEEEETTC--SSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SS
T ss_pred CeEEEEeCCC--CceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CC
Confidence 6777765432 24889999999999999999999999999999999987654456 8899999999 9999999 99
Q ss_pred CCCCCEEEEeccccC--CCCCccccCCCCCCCcccccccccccCCCC-CCCCccceEEEeeCCceEECCCCCCccccccc
Q 018246 88 FKEGDKVGVGVLVAS--CQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~--~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l 164 (359)
|++||||++.+.. . |+.|.+|+.|.++.|.+..+.. .|. ..+|+|+||+++|++.++++|++++ + +|++
T Consensus 77 ~~vGdrV~~~~~~-~~~cg~C~~C~~g~~~~C~~~~~~~-----~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~-~aal 148 (357)
T 2b5w_A 77 LEEGDIVVPTVRR-PPASGTNEYFERDQPDMAPDGMYFE-----RGIVGAHGYMSEFFTSPEKYLVRIPRSQA-E-LGFL 148 (357)
T ss_dssp CCTTCEEEECSEE-CCTTCCCHHHHTTCGGGCCTTSCEE-----ETTBEECCSCBSEEEEEGGGEEECCGGGS-T-TGGG
T ss_pred CCCCCEEEECCcC-CCCCCCChHHhCcCcccCCCCcccc-----cCccCCCcceeeEEEEchHHeEECCCCcc-h-hhhh
Confidence 9999999877654 4 9999999999999999865321 011 2459999999999999999999999 5 4568
Q ss_pred cchhhhhhhHhHhcCCCCCC------CEEEEECCchHHHHH-HHHH-HHCCCe-EEEEeCChh---hHHHHHHHcCCcEE
Q 018246 165 LCAGITVYSPMKYYGMTEPG------KHLGVAGLGGLGHVA-VKIG-KAFGLK-VTVISTSPK---KESEAISKLGADAF 232 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g------~~VlI~G~g~vG~~a-~~la-~~~g~~-V~~v~~~~~---~~~~~~~~~g~~~v 232 (359)
+.++.|||+++... .+++| ++|||+|+|++|+++ +|+| +.+|++ |++++++++ +++.+ +++|++++
T Consensus 149 ~~~~~ta~~al~~~-~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~lGa~~v 226 (357)
T 2b5w_A 149 IEPISITEKALEHA-YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EELDATYV 226 (357)
T ss_dssp HHHHHHHHHHHHHH-HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHTTCEEE
T ss_pred hchHHHHHHHHHhc-CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHcCCccc
Confidence 88999999999554 45899 999999999999999 9999 999996 999999998 88888 89999999
Q ss_pred ecCCCHHH--HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC-CCeeeCHHHH----HhcCcEEEEeecCC
Q 018246 233 LVSSDPAK--VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFAL----VGARRLVGGSNVGG 305 (359)
Q Consensus 233 ~~~~~~~~--~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~----~~k~~~i~g~~~~~ 305 (359)
++++.+. +.++.+++|+|||++|+..+++.++++++++|+++.+|... ...+++...+ +.|++++.|+....
T Consensus 227 -~~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 305 (357)
T 2b5w_A 227 -DSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSH 305 (357)
T ss_dssp -ETTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCC
T ss_pred -CCCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCC
Confidence 8765322 44443489999999999866899999999999999999876 5567777777 89999999998888
Q ss_pred HHHHHHHHHHHHhC--C-CcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 306 MKETQEMLDFCAKH--N-IAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 306 ~~~~~~~~~~l~~g--~-i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
.++++++++++++| + +++.+ ++|||+++++||+.+ ...||+|+++++
T Consensus 306 ~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~~~ 356 (357)
T 2b5w_A 306 VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTIKTAIEFST 356 (357)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCCEEEEECCC
T ss_pred HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCceEEEEecC
Confidence 89999999999999 8 67776 899999999999987 346999999864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=402.63 Aligned_cols=339 Identities=22% Similarity=0.280 Sum_probs=284.5
Q ss_pred ccceeeeeecCCCCCccceeeecCCCC-CCe------EEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETG-ADD------VTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVG 82 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e------VlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG 82 (359)
+||++++.. ++.+++++++.|+|+ ++| |||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|
T Consensus 2 ~Mka~~~~~---~~~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG 77 (398)
T 1kol_A 2 GNRGVVYLG---SGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKG 77 (398)
T ss_dssp CEEEEEEEE---TTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEEC
T ss_pred ccEEEEEec---CCceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEEC
Confidence 588887764 346889999999997 898 99999999999999999998654 4568999999999999999
Q ss_pred CCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCC----CCCCccceEEEeeCC--ceEECCCCC
Q 018246 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT----KTYGGYSDLIVVDQH--YVLRFPDNM 156 (359)
Q Consensus 83 ~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~g~~a~~~~~~~~--~~~~lp~~l 156 (359)
++|++|++||||++.+. ..|+.|.+|++|.++.|.+......+. ..|. ..+|+|+||+++|++ +++++|+++
T Consensus 78 ~~v~~~~vGDrV~~~~~-~~cg~C~~C~~g~~~~C~~~~~~~~~~-~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~ 155 (398)
T 1kol_A 78 RDVENLQIGDLVSVPFN-VACGRCRSCKEMHTGVCLTVNPARAGG-AYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRD 155 (398)
T ss_dssp TTCCSCCTTCEEECCSE-ECCSSSHHHHTTCGGGCSSSCSSSSCE-EBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHH
T ss_pred CCCCcCCCCCEEEECCc-CCCCCChHHhCcCcccCCCcccccccc-eeeeccCCCCCceeeeEEEecchhCeEEECCCCc
Confidence 99999999999977654 489999999999999998764211000 0011 246999999999987 899999999
Q ss_pred Cccc----cccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcE
Q 018246 157 PLDA----GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 157 ~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
++++ ++++++++.|||++++. ..+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.+ +++|++
T Consensus 156 ~~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~lGa~- 232 (398)
T 1kol_A 156 KAMEKIRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQGFE- 232 (398)
T ss_dssp HHHHTHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCE-
T ss_pred chhhhcccccccccHHHHHHHHHHH-cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HHcCCc-
Confidence 9888 78999999999999974 556999999999999999999999999999 799999999999888 899997
Q ss_pred EecCCCH----HHHHHhcC--CccEEEECCCChh---------------hHHHHHhccccCCEEEEecCC-CC-------
Q 018246 232 FLVSSDP----AKVKAAMG--TMDYIIDTVSAVH---------------SLAPLLGLLKVNGKLVTVGLP-EK------- 282 (359)
Q Consensus 232 v~~~~~~----~~~~~~~~--~~d~vid~~g~~~---------------~~~~~~~~l~~~G~~v~~g~~-~~------- 282 (359)
++++++. +.+.++++ ++|+|||++|+.. ++..++++++++|+++.+|.. .+
T Consensus 233 ~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~ 312 (398)
T 1kol_A 233 IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDA 312 (398)
T ss_dssp EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSH
T ss_pred EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCccccccc
Confidence 6776542 34555554 7999999999862 588999999999999999865 11
Q ss_pred -----CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCc---cc-EEEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 283 -----PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIA---AD-IELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 283 -----~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~---~~-~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
...++...++.|++++.++......+++++++++.+|+++ +. .++|+|+++++||+.+.+++. ||+||++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvi~~ 391 (398)
T 1kol_A 313 AAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP-KKFVIDP 391 (398)
T ss_dssp HHHTTCCCCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTCS-CEEEECT
T ss_pred ccccccccccHHHHhhcccEEEecccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCCc-eEEEEEe
Confidence 2456677788899999987665567789999999999998 33 489999999999999998887 9999999
Q ss_pred CCCcC
Q 018246 354 GNSKL 358 (359)
Q Consensus 354 ~~~~~ 358 (359)
+..++
T Consensus 392 ~~~~~ 396 (398)
T 1kol_A 392 HKTFS 396 (398)
T ss_dssp TCSSC
T ss_pred CCccc
Confidence 87654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=395.34 Aligned_cols=311 Identities=19% Similarity=0.259 Sum_probs=277.4
Q ss_pred CCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCC
Q 018246 6 ETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~ 84 (359)
.++.+||++++..++.++.+++.+.+.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus 24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~ 103 (353)
T 4dup_A 24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG 103 (353)
T ss_dssp CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence 3677899999988777788999999999999999999999999999999999998763 456899999999999999999
Q ss_pred CCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccc
Q 018246 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 85 v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l 164 (359)
|++|++||||+... .+|+|+||+++|++.++++|+++++++||++
T Consensus 104 v~~~~vGdrV~~~~-----------------------------------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l 148 (353)
T 4dup_A 104 VSGYAVGDKVCGLA-----------------------------------NGGAYAEYCLLPAGQILPFPKGYDAVKAAAL 148 (353)
T ss_dssp CCSCCTTCEEEEEC-----------------------------------SSCCSBSEEEEEGGGEEECCTTCCHHHHHTS
T ss_pred CCCCCCCCEEEEec-----------------------------------CCCceeeEEEEcHHHcEeCCCCCCHHHHhhh
Confidence 99999999997543 3499999999999999999999999999999
Q ss_pred cchhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---
Q 018246 165 LCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK--- 240 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~--- 240 (359)
++++.|||+++.....+++|++|||+| +|++|++++|+|+..|++|+++++++++++.+ +++|++.++++++.+.
T Consensus 149 ~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~~~~~~~~~~~ 227 (353)
T 4dup_A 149 PETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEAC-ERLGAKRGINYRSEDFAAV 227 (353)
T ss_dssp HHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCCEEEeCCchHHHHH
Confidence 999999999998888889999999995 59999999999999999999999999999888 7899999998876533
Q ss_pred HHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-ee-eCHHHHHhcCcEEEEeecCCHHH---------
Q 018246 241 VKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LE-VPIFALVGARRLVGGSNVGGMKE--------- 308 (359)
Q Consensus 241 ~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~-~~~~~~~~k~~~i~g~~~~~~~~--------- 308 (359)
+.+.++ ++|++|||+|+.. +..++++++++|+++.+|...+. .. ++...++.|++++.|+....+.+
T Consensus 228 ~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~ 306 (353)
T 4dup_A 228 IKAETGQGVDIILDMIGAAY-FERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDD 306 (353)
T ss_dssp HHHHHSSCEEEEEESCCGGG-HHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHH
T ss_pred HHHHhCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHH
Confidence 333333 8999999999976 99999999999999999987653 33 77888889999999998766543
Q ss_pred -HHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 309 -TQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 309 -~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++++++++|++++.+ ++|+|+++++||+.+.+++..||+||++
T Consensus 307 ~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~ 353 (353)
T 4dup_A 307 LLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV 353 (353)
T ss_dssp HHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred HHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 78899999999999887 8999999999999999999889999975
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-53 Score=405.19 Aligned_cols=340 Identities=19% Similarity=0.197 Sum_probs=288.4
Q ss_pred CCCcccceeeeeecC-----------CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhc----------------
Q 018246 6 ETEHPQKAIGWAARD-----------NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCAR---------------- 58 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~---------------- 58 (359)
.+|.+||++++..++ .++.+++++++.|+|+++||+|||.++|||++|++...
T Consensus 20 ~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~ 99 (447)
T 4a0s_A 20 PVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQ 99 (447)
T ss_dssp CCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTT
T ss_pred CCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhccc
Confidence 367889999988654 12368899999999999999999999999999985421
Q ss_pred cCCC-CCCCC-CcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCC-C
Q 018246 59 NEWG-VTNYP-IVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKT-Y 135 (359)
Q Consensus 59 g~~~-~~~~p-~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 135 (359)
|.+. ...+| .++|||++|+|+++|++|++|++||||++.+.. .|+.| +|..+.++.|.+.... |... +
T Consensus 100 g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~-~~~~~-~~~~~~~~~c~~~~~~-------G~~~~~ 170 (447)
T 4a0s_A 100 GGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAH-VDEQE-PATHGDGMLGTEQRAW-------GFETNF 170 (447)
T ss_dssp CGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEE-CCTTS-GGGGTCTTCSTTCEET-------TTTSSS
T ss_pred CccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCc-CcCcc-cccccccccccccccc-------cccCCC
Confidence 1111 12345 699999999999999999999999999887653 45444 5666889999877543 2222 5
Q ss_pred CccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhc--CCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEE
Q 018246 136 GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYY--GMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTV 212 (359)
Q Consensus 136 g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~ 212 (359)
|+|+||+++|+++++++|+++++++||++++++.|||+++... ..+++|++|||+|+ |++|++++|+|++.|++|++
T Consensus 171 G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~ 250 (447)
T 4a0s_A 171 GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVA 250 (447)
T ss_dssp CSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999643 66799999999997 99999999999999999999
Q ss_pred EeCChhhHHHHHHHcCCcEEecCCCH---------------------HHHHHhcC-CccEEEECCCChhhHHHHHhcccc
Q 018246 213 ISTSPKKESEAISKLGADAFLVSSDP---------------------AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKV 270 (359)
Q Consensus 213 v~~~~~~~~~~~~~~g~~~v~~~~~~---------------------~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~ 270 (359)
+++++++++.+ +++|+++++++.+. +.+.+.++ ++|++||++|+.. +..+++++++
T Consensus 251 ~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~~-~~~~~~~l~~ 328 (447)
T 4a0s_A 251 VVSSAQKEAAV-RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARR 328 (447)
T ss_dssp EESSHHHHHHH-HHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHHH-HHHHHHHSCT
T ss_pred EeCCHHHHHHH-HhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCchH-HHHHHHHHhc
Confidence 99999999888 89999998876432 23334444 7999999999865 8999999999
Q ss_pred CCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEE
Q 018246 271 NGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYR 348 (359)
Q Consensus 271 ~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gk 348 (359)
+|+++.+|...+ ...++...++.+++++.|+...+..++.++++++++|++++.+ ++|||+++++||+.+.+++..||
T Consensus 329 ~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~GK 408 (447)
T 4a0s_A 329 GGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGK 408 (447)
T ss_dssp TCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSSE
T ss_pred CCEEEEEecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCceE
Confidence 999999997765 4567888888999999999999999999999999999999887 89999999999999999998999
Q ss_pred EEEEcCCC
Q 018246 349 FVIDVGNS 356 (359)
Q Consensus 349 vvv~~~~~ 356 (359)
+||.+.++
T Consensus 409 vvv~~~~~ 416 (447)
T 4a0s_A 409 VAVLCMAP 416 (447)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99998665
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-53 Score=388.14 Aligned_cols=314 Identities=18% Similarity=0.203 Sum_probs=274.7
Q ss_pred CCCCCCCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEE
Q 018246 1 MAKSPETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTK 80 (359)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~ 80 (359)
|.++ ++.+||++++..++.++.+++.+.+.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|++
T Consensus 1 M~~~--~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~ 77 (334)
T 3qwb_A 1 MKCT--IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVA 77 (334)
T ss_dssp ------CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEE
T ss_pred CCCC--CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEE
Confidence 5543 67789999988776667799999999999999999999999999999999999776 45799999999999999
Q ss_pred eCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEee-CCceEECCCCCCcc
Q 018246 81 VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVD-QHYVLRFPDNMPLD 159 (359)
Q Consensus 81 vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~-~~~~~~lp~~l~~~ 159 (359)
+|++|++|++||||++.. +|+|+||+++| ++.++++|++++++
T Consensus 78 vG~~v~~~~~GdrV~~~~------------------------------------~G~~aey~~v~~~~~~~~~P~~~~~~ 121 (334)
T 3qwb_A 78 KGKGVTNFEVGDQVAYIS------------------------------------NSTFAQYSKISSQGPVMKLPKGTSDE 121 (334)
T ss_dssp ECTTCCSCCTTCEEEEEC------------------------------------SSCSBSEEEEETTSSEEECCTTCCHH
T ss_pred ECCCCCCCCCCCEEEEee------------------------------------CCcceEEEEecCcceEEECCCCCCHH
Confidence 999999999999997542 49999999999 99999999999999
Q ss_pred c---cccccchhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 160 A---GAPLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 160 ~---aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
+ ++++++.+.|||+++.....+++|++|||+| +|++|++++|+|+..|++|+++++++++++.+ +++|+++++++
T Consensus 122 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~ 200 (334)
T 3qwb_A 122 ELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEYGAEYLINA 200 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEET
T ss_pred HhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCcEEEeC
Confidence 9 8889999999999999888889999999998 59999999999999999999999999999877 88999999998
Q ss_pred CCHH---HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecC----C
Q 018246 236 SDPA---KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVG----G 305 (359)
Q Consensus 236 ~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~----~ 305 (359)
++.+ .+.+.++ ++|++|||+|+.. ++.++++|+++|+++.+|...+. ..++...++.|++++.++... .
T Consensus 201 ~~~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (334)
T 3qwb_A 201 SKEDILRQVLKFTNGKGVDASFDSVGKDT-FEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIAD 279 (334)
T ss_dssp TTSCHHHHHHHHTTTSCEEEEEECCGGGG-HHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCS
T ss_pred CCchHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCC
Confidence 7653 3444443 7999999999855 99999999999999999987654 367778888899999975543 2
Q ss_pred HHH----HHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 306 MKE----TQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 306 ~~~----~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
..+ ++++++++++|++++.+ ++|||+++++||+.+.+++..||+|+++++
T Consensus 280 ~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q 334 (334)
T 3qwb_A 280 PEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ 334 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 333 47899999999999887 899999999999999999989999999864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-52 Score=384.28 Aligned_cols=312 Identities=21% Similarity=0.302 Sum_probs=269.8
Q ss_pred ccceeeeeecC---CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCC
Q 018246 10 PQKAIGWAARD---NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
+||++++..++ .++.+++.+++.|+|+++||+|||++++||++|++.+.|. ...+|.++|||++|+|+++|++|+
T Consensus 2 ~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v~ 79 (346)
T 3fbg_A 2 SLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEVT 79 (346)
T ss_dssp CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTCC
T ss_pred CcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCCC
Confidence 48999988765 5778999999999999999999999999999999999886 356789999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
+|++||||+.... ...+|+|+||+++|++.++++|+++++++|+++++
T Consensus 80 ~~~~GdrV~~~~~--------------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~ 127 (346)
T 3fbg_A 80 MFNQGDIVYYSGS--------------------------------PDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPL 127 (346)
T ss_dssp SCCTTCEEEECCC--------------------------------TTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHH
T ss_pred cCCCCCEEEEcCC--------------------------------CCCCcceeEEEEEChHHeEECCCCCCHHHhhhcch
Confidence 9999999975421 13469999999999999999999999999999999
Q ss_pred hhhhhhhHhHhcCCCC------CCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH-
Q 018246 167 AGITVYSPMKYYGMTE------PGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP- 238 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~------~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~- 238 (359)
++.|||+++.....++ +|++|||+| +|++|++++|+|+..|++|+++++++++++.+ +++|+++++++++.
T Consensus 128 ~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~ 206 (346)
T 3fbg_A 128 TGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT-KKMGADIVLNHKESL 206 (346)
T ss_dssp HHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH-HHHTCSEEECTTSCH
T ss_pred hHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEEECCccH
Confidence 9999999998887777 999999995 69999999999999999999999999999888 78999999988752
Q ss_pred -HHHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCH----------
Q 018246 239 -AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM---------- 306 (359)
Q Consensus 239 -~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~---------- 306 (359)
+.+.+..+ ++|++|||+|+...++.++++|+++|+++.++... .+++...+..|++++.++.....
T Consensus 207 ~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (346)
T 3fbg_A 207 LNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFE--NDQDLNALKPKSLSFSHEFMFARPLNQTDDMIK 284 (346)
T ss_dssp HHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCS--SCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHH
T ss_pred HHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCC--CCCccccccccceEEEEEEEecccccchhhHHH
Confidence 33444433 89999999999877899999999999999987643 45666677789999998765432
Q ss_pred --HHHHHHHHHHHhCCCcccE-EEE---ccccHHHHHHHHHcCCccEEEEEEcCCCcC
Q 018246 307 --KETQEMLDFCAKHNIAADI-ELV---RMDQINTAMERLAKSDVKYRFVIDVGNSKL 358 (359)
Q Consensus 307 --~~~~~~~~~l~~g~i~~~~-~~~---~l~~~~~a~~~~~~~~~~gkvvv~~~~~~~ 358 (359)
+.++++++++++|++++.+ ++| +++++++||+.+.+++..||+|+++++..+
T Consensus 285 ~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~~~~ 342 (346)
T 3fbg_A 285 HHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNEGHH 342 (346)
T ss_dssp HHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC-----
T ss_pred HHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCCccc
Confidence 4478899999999999887 677 999999999999999999999999998643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=386.85 Aligned_cols=308 Identities=21% Similarity=0.321 Sum_probs=266.4
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
.|.+||++++..++.++.+++.+++.|+|++|||||||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|+++
T Consensus 18 ~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v 97 (342)
T 4eye_A 18 GPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGS 97 (342)
T ss_dssp CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECCTTS
T ss_pred CCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEECCCC
Confidence 57789999988777778899999999999999999999999999999999999875 34679999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
+ |++||||++.. .+|+|+||+++|++.++++|+++++++|++++
T Consensus 98 ~-~~vGDrV~~~~-----------------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~ 141 (342)
T 4eye_A 98 G-IKPGDRVMAFN-----------------------------------FIGGYAERVAVAPSNILPTPPQLDDAEAVALI 141 (342)
T ss_dssp S-CCTTCEEEEEC-----------------------------------SSCCSBSEEEECGGGEEECCTTSCHHHHHHHT
T ss_pred C-CCCCCEEEEec-----------------------------------CCCcceEEEEEcHHHeEECCCCCCHHHHHHhh
Confidence 9 99999997553 34999999999999999999999999999999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH--HHHH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP--AKVK 242 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~--~~~~ 242 (359)
+++.|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++++.+ +++|+++++++++. +.+.
T Consensus 142 ~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~v~~~~~~~~~~v~ 220 (342)
T 4eye_A 142 ANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFV-KSVGADIVLPLEEGWAKAVR 220 (342)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEESSTTHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCcEEecCchhHHHHHH
Confidence 999999999988888899999999997 9999999999999999999999999999888 88999999988721 3344
Q ss_pred HhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecCCH---------HHHH
Q 018246 243 AAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVGGM---------KETQ 310 (359)
Q Consensus 243 ~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~~~---------~~~~ 310 (359)
++++ ++|++|||+|+.. +..++++++++|+++.+|...+. ..++...++.|++++.|+....+ +.++
T Consensus 221 ~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 299 (342)
T 4eye_A 221 EATGGAGVDMVVDPIGGPA-FDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQA 299 (342)
T ss_dssp HHTTTSCEEEEEESCC--C-HHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHH
T ss_pred HHhCCCCceEEEECCchhH-HHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHH
Confidence 4544 7999999999975 99999999999999999976543 35666667889999999876432 4588
Q ss_pred HHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 311 EMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 311 ~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++++++| +++.+ ++|+|+++++||+.+.+++..||+||++
T Consensus 300 ~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P 342 (342)
T 4eye_A 300 GLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP 342 (342)
T ss_dssp HHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred HHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence 999999999 98877 8999999999999999999899999974
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-52 Score=386.59 Aligned_cols=314 Identities=17% Similarity=0.227 Sum_probs=271.9
Q ss_pred CCCcccceeeeeec---CCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeC
Q 018246 6 ETEHPQKAIGWAAR---DNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVG 82 (359)
Q Consensus 6 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG 82 (359)
..+.+||++++..+ +.+..+++.+++.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|
T Consensus 18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG 97 (363)
T 4dvj_A 18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG 97 (363)
T ss_dssp -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence 34567999998766 457789999999999999999999999999999999999987766789999999999999999
Q ss_pred CCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccc
Q 018246 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 162 (359)
Q Consensus 83 ~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa 162 (359)
++|++|++||||+... +...+|+|+||+++|++.++++|+++++++||
T Consensus 98 ~~v~~~~vGdrV~~~~--------------------------------~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa 145 (363)
T 4dvj_A 98 PDVTLFRPGDEVFYAG--------------------------------SIIRPGTNAEFHLVDERIVGRKPKTLDWAEAA 145 (363)
T ss_dssp TTCCSCCTTCEEEECC--------------------------------CTTSCCSCBSEEEEEGGGCEECCTTSCHHHHH
T ss_pred CCCCCCCCCCEEEEcc--------------------------------CCCCCccceEEEEeCHHHeeECCCCCCHHHHH
Confidence 9999999999997532 11346999999999999999999999999999
Q ss_pred cccchhhhhhhHhHhcCCCC-----CCCEEEEEC-CchHHHHHHHHHHH-CCCeEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 163 PLLCAGITVYSPMKYYGMTE-----PGKHLGVAG-LGGLGHVAVKIGKA-FGLKVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~-----~g~~VlI~G-~g~vG~~a~~la~~-~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
+++++++|||+++.....++ +|++|||+| +|++|++++|+|++ .|++|+++++++++.+.+ +++|+++++++
T Consensus 146 ~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~-~~lGad~vi~~ 224 (363)
T 4dvj_A 146 ALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV-KSLGAHHVIDH 224 (363)
T ss_dssp TSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH-HHTTCSEEECT
T ss_pred hhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH-HHcCCCEEEeC
Confidence 99999999999998877777 899999998 69999999999998 588999999999999888 89999999998
Q ss_pred CCH--HHHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCH------
Q 018246 236 SDP--AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM------ 306 (359)
Q Consensus 236 ~~~--~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~------ 306 (359)
++. +.+.++.+ ++|+||||+|+...++.++++|+++|+++.+|.. ..++...++.|++++.++.....
T Consensus 225 ~~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~---~~~~~~~~~~k~~~i~~~~~~~~~~~~~~ 301 (363)
T 4dvj_A 225 SKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDP---SAFDIMLFKRKAVSIHHELMFTRPMFGTP 301 (363)
T ss_dssp TSCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCC---SSCCGGGGTTTTCEEEECCTTHHHHHTCT
T ss_pred CCCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCC---CccchHHHhhccceEEEEEeeccccccCc
Confidence 652 23444433 8999999999886689999999999999999653 35667777889999998766432
Q ss_pred ------HHHHHHHHHHHhCCCcccE-EEE---ccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 307 ------KETQEMLDFCAKHNIAADI-ELV---RMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 307 ------~~~~~~~~~l~~g~i~~~~-~~~---~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
+.++++++++++|++++.+ +++ +++++++||+.+.+++..||+||++..
T Consensus 302 ~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~~ 360 (363)
T 4dvj_A 302 DMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIEGFG 360 (363)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECSC
T ss_pred chhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEEEeCcc
Confidence 4578999999999999877 566 999999999999999989999998854
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=381.56 Aligned_cols=309 Identities=19% Similarity=0.212 Sum_probs=266.4
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC-----CCCCCCCcccccccEEEEEeCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW-----GVTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~-----~~~~~p~~~G~e~~G~V~~vG~ 83 (359)
.+||++.+..++.+..+++.+.+.|+|+++||||||.+++||++|++.+.|.. ....+|.++|||++|+|+++|+
T Consensus 5 ~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~ 84 (321)
T 3tqh_A 5 KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS 84 (321)
T ss_dssp CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred ccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence 36999998877777779999999999999999999999999999999998831 2356789999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
+|++|++||||++.+.. ...+|+|+||+++|++.++++|+++++++|++
T Consensus 85 ~v~~~~~GdrV~~~~~~-------------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~ 133 (321)
T 3tqh_A 85 DVNNVNIGDKVMGIAGF-------------------------------PDHPCCYAEYVCASPDTIIQKLEKLSFLQAAS 133 (321)
T ss_dssp TCCSCCTTCEEEEECST-------------------------------TTCCCCSBSEEEECGGGEEECCTTSCHHHHHH
T ss_pred CCCCCCCCCEEEEccCC-------------------------------CCCCCcceEEEEecHHHhccCCCCCCHHHHhh
Confidence 99999999999865421 02359999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHH
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVK 242 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~ 242 (359)
+++++.|||+++ +...+++|++|||+| +|++|++++|+|+..|++|+++++ +++.+.+ +++|+++++|+++.+.+.
T Consensus 134 l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~~~~-~~lGa~~~i~~~~~~~~~ 210 (321)
T 3tqh_A 134 LPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFL-KALGAEQCINYHEEDFLL 210 (321)
T ss_dssp SHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHHHHH-HHHTCSEEEETTTSCHHH
T ss_pred hhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchHHHH-HHcCCCEEEeCCCcchhh
Confidence 999999999999 556669999999997 699999999999999999999884 5566666 899999999988766344
Q ss_pred HhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEee-cCCHHHHHHHHHHHHhCCC
Q 018246 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSN-VGGMKETQEMLDFCAKHNI 321 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~-~~~~~~~~~~~~~l~~g~i 321 (359)
+...++|+||||+|++. +..++++++++|+++.+|...... ....+..+++++.++. ....++++++++++++|++
T Consensus 211 ~~~~g~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l 287 (321)
T 3tqh_A 211 AISTPVDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTITAGR--VIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKL 287 (321)
T ss_dssp HCCSCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTTHHH--HHHHHHHTTCEEECCCCCCCHHHHHHHHHHHHTTSS
T ss_pred hhccCCCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCCchh--hhhhhhhcceEEEEEecCCCHHHHHHHHHHHHCCCc
Confidence 44479999999999988 699999999999999998654222 2234567899999843 4567889999999999999
Q ss_pred cccE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 322 AADI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 322 ~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
++.+ ++|||+++++||+.+.+++..||+|++++
T Consensus 288 ~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~ 321 (321)
T 3tqh_A 288 RIEISRIFQLSEAVTAHELLETGHVRGKLVFKVR 321 (321)
T ss_dssp CCCEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred ccccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 9887 89999999999999999998899999874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=391.36 Aligned_cols=328 Identities=19% Similarity=0.274 Sum_probs=273.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCC-CeEEEEEeeeecchhhhhhhcc--CCCCCCC---CCcccccccEEEEEeCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGA-DDVTIKILFCGICHSDLHCARN--EWGVTNY---PIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~eVlV~v~~~~i~~~D~~~~~g--~~~~~~~---p~~~G~e~~G~V~~vG~~ 84 (359)
||++++..++. .+++++++.|+|++ +||+|||.+++||++|++.+.| .++...+ |.++|||++|+|++ ++
T Consensus 1 MkA~~~~~~g~--~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~ 76 (366)
T 2cdc_A 1 MKAIIVKPPNA--GVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY 76 (366)
T ss_dssp CEEEEECTTSC--CCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC
T ss_pred CeEEEEeCCCC--ceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC
Confidence 67777664432 38899999999999 9999999999999999999998 5543455 89999999999999 77
Q ss_pred CCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCC-CCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTK-TYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 85 v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
++|++||||++.+.. .|+.|.+|+.|.++.|.+..+... |.. .+|+|+||+++|++.++++|++++ ++| +
T Consensus 77 -~~~~~GDrV~~~~~~-~cg~C~~C~~g~~~~C~~~~~~~~-----g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~A-a 147 (366)
T 2cdc_A 77 -HGFSQGDLVMPVNRR-GCGICRNCLVGRPDFCETGEFGEA-----GIHKMDGFMREWWYDDPKYLVKIPKSIE-DIG-I 147 (366)
T ss_dssp -SSCCTTCEEEECSEE-CCSSSHHHHTTCGGGCSSSCCEEE-----TTBEECCSCBSEEEECGGGEEEECGGGT-TTG-G
T ss_pred -CCCCCCCEEEEcCCC-CCCCChhhhCcCcccCCCCCcccC-----CccCCCCceeEEEEechHHeEECcCCcc-hhh-h
Confidence 889999999887665 899999999999999997643210 122 459999999999999999999999 776 5
Q ss_pred ccchhhhhhhHhH--h--cCCCC--C-------CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHHc
Q 018246 164 LLCAGITVYSPMK--Y--YGMTE--P-------GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP---KKESEAISKL 227 (359)
Q Consensus 164 l~~~~~ta~~~l~--~--~~~~~--~-------g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~~ 227 (359)
++.++.|||+++. . ...++ + |++|||+|+|++|++++|+|+..|++|+++++++ ++.+.+ +++
T Consensus 148 l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~ 226 (366)
T 2cdc_A 148 LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET 226 (366)
T ss_dssp GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH
T ss_pred hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh
Confidence 7788999999998 3 44557 8 9999999999999999999999999999999998 888777 789
Q ss_pred CCcEEecCCC--HHHHHHhcCCccEEEECCCChhhH-HHHHhccccCCEEEEecCCCCC-eeeCHHH---HHhcCcEEEE
Q 018246 228 GADAFLVSSD--PAKVKAAMGTMDYIIDTVSAVHSL-APLLGLLKVNGKLVTVGLPEKP-LEVPIFA---LVGARRLVGG 300 (359)
Q Consensus 228 g~~~v~~~~~--~~~~~~~~~~~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~---~~~k~~~i~g 300 (359)
|++++ | ++ .+.+.+..+++|++||++|....+ +.++++|+++|+++.+|..... ..++... ++.|++++.|
T Consensus 227 ga~~v-~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g 304 (366)
T 2cdc_A 227 KTNYY-N-SSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIG 304 (366)
T ss_dssp TCEEE-E-CTTCSHHHHHHHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEE
T ss_pred CCcee-c-hHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEE
Confidence 99988 7 54 122333125899999999997658 9999999999999999987654 6777777 8899999999
Q ss_pred eecCCHHHHHHHHHHHHhCC------CcccE-EEEccccHHHHHHHH-HcCCccEEEEEEcC
Q 018246 301 SNVGGMKETQEMLDFCAKHN------IAADI-ELVRMDQINTAMERL-AKSDVKYRFVIDVG 354 (359)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~g~------i~~~~-~~~~l~~~~~a~~~~-~~~~~~gkvvv~~~ 354 (359)
+..+...+++++++++++|+ +++.+ ++|||+++++||+.+ .++...||+|++++
T Consensus 305 ~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~~~ 366 (366)
T 2cdc_A 305 LVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRILWE 366 (366)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEEECC
T ss_pred ecCCCHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEEecC
Confidence 98888899999999999999 55766 899999999999984 44556799999874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-52 Score=380.91 Aligned_cols=307 Identities=22% Similarity=0.304 Sum_probs=270.0
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++++..+++++.+++.+.+.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++|++
T Consensus 2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~ 81 (325)
T 3jyn_A 2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV 81 (325)
T ss_dssp EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence 89999888777888999999999999999999999999999999999998876678999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||||++.. ..+|+|+||+++|+++++++|+++++++|+++++.++|
T Consensus 82 GdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~t 127 (325)
T 3jyn_A 82 GDRVAYGT----------------------------------GPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLT 127 (325)
T ss_dssp TCEEEESS----------------------------------SSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEec----------------------------------CCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHH
Confidence 99997532 23599999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHHHhcC
Q 018246 171 VYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVKAAMG 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~ 246 (359)
||+++.....+++|++|||+| +|++|++++|+|+..|++|+++++++++++.+ +++|+++++++++.+ .+.+.++
T Consensus 128 a~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~Ga~~~~~~~~~~~~~~~~~~~~ 206 (325)
T 3jyn_A 128 VQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA-KALGAWETIDYSHEDVAKRVLELTD 206 (325)
T ss_dssp HHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHhC
Confidence 999999888889999999998 59999999999999999999999999999888 789999999987653 3444443
Q ss_pred --CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhc-CcEEEEeec----CCHHH----HHHHHH
Q 018246 247 --TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGA-RRLVGGSNV----GGMKE----TQEMLD 314 (359)
Q Consensus 247 --~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k-~~~i~g~~~----~~~~~----~~~~~~ 314 (359)
++|++||++|+.. +..++++++++|+++.+|...+.. .++...++.+ .+++.+... ....+ ++++++
T Consensus 207 ~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (325)
T 3jyn_A 207 GKKCPVVYDGVGQDT-WLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFD 285 (325)
T ss_dssp TCCEEEEEESSCGGG-HHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHH
T ss_pred CCCceEEEECCChHH-HHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHH
Confidence 7999999999955 999999999999999999876543 5777777777 667665332 22233 458899
Q ss_pred HHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 315 FCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 315 ~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++|++++.+ ++|||+++++||+.+.+++..||+||.+
T Consensus 286 l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p 325 (325)
T 3jyn_A 286 MLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP 325 (325)
T ss_dssp HHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred HHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 99999999877 8999999999999999999999999863
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-52 Score=382.96 Aligned_cols=309 Identities=19% Similarity=0.312 Sum_probs=260.7
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
+||++++..++.+..+++.+.+.|+|+++||+|||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|++|++|
T Consensus 3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~~ 82 (349)
T 4a27_A 3 EMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGY 82 (349)
T ss_dssp CEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCSC
T ss_pred eeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCCC
Confidence 59999988776667799999999999999999999999999999999999865 35678999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||||+..+ .+|+|+||+++|+++++++|+++++++|+++++++
T Consensus 83 ~~GdrV~~~~-----------------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~ 127 (349)
T 4a27_A 83 EIGDRVMAFV-----------------------------------NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNF 127 (349)
T ss_dssp CTTCEEEEEC-----------------------------------SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHH
T ss_pred CCCCEEEEec-----------------------------------CCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHH
Confidence 9999997543 34999999999999999999999999999999999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEecCCCH---HHHHH
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDP---AKVKA 243 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~ 243 (359)
.|||+++.+...+++|++|||+|+ |++|++++|+|+..| ++|++++ ++++.+.+ + +|++++++ ++. +.+.+
T Consensus 128 ~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~-~-~ga~~~~~-~~~~~~~~~~~ 203 (349)
T 4a27_A 128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAI-K-DSVTHLFD-RNADYVQEVKR 203 (349)
T ss_dssp HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHH-G-GGSSEEEE-TTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHH-H-cCCcEEEc-CCccHHHHHHH
Confidence 999999988888899999999997 999999999999996 5888888 56677766 5 99999998 443 33444
Q ss_pred hcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-----------------CeeeCHHHHHhcCcEEEEeecCC
Q 018246 244 AMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-----------------PLEVPIFALVGARRLVGGSNVGG 305 (359)
Q Consensus 244 ~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----------------~~~~~~~~~~~k~~~i~g~~~~~ 305 (359)
+++ ++|+||||+|+.. +..++++|+++|+++.+|.... ...++...++.+++++.|+....
T Consensus 204 ~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~ 282 (349)
T 4a27_A 204 ISAEGVDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLN 282 (349)
T ss_dssp HCTTCEEEEEEECC--------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECHHH
T ss_pred hcCCCceEEEECCCchh-HHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehh
Confidence 444 8999999999987 6899999999999999986531 12356677888999999987632
Q ss_pred -----------HHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCCcC
Q 018246 306 -----------MKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNSKL 358 (359)
Q Consensus 306 -----------~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~~ 358 (359)
.++++++++++++|++++.+ ++|||+++++||+.+.+++..||+||++++++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~~~~~~ 347 (349)
T 4a27_A 283 LLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEKTPT 347 (349)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSSEEEEETTCCC-
T ss_pred eeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCCCCceEEEecCCCCC
Confidence 56799999999999999887 799999999999999999989999999998754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-53 Score=384.90 Aligned_cols=298 Identities=18% Similarity=0.262 Sum_probs=246.0
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+||++++.. .++.+++.+.+.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|+
T Consensus 4 tMka~~~~~--~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~ 81 (315)
T 3goh_A 4 QHQVWAYQT--KTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKM 81 (315)
T ss_dssp EEEEEEEET--TTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred ceEEEEEeC--CCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence 689988763 567799999999999999999999999999999999999877678899999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+. ...+|+|+||+++|++.++++|+++++++||++++++.
T Consensus 82 vGdrV~~~~~--------------------------------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 129 (315)
T 3goh_A 82 LGRRVAYHTS--------------------------------LKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLL 129 (315)
T ss_dssp TTCEEEEECC--------------------------------TTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHH
T ss_pred CCCEEEEeCC--------------------------------CCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHH
Confidence 9999986541 23469999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d 249 (359)
|||+++ ....+++|++|||+|+|++|++++|+|+..|++|++++ ++++.+.+ +++|++++++ + .+++.+++|
T Consensus 130 ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~-~~lGa~~v~~--d---~~~v~~g~D 201 (315)
T 3goh_A 130 TAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALA-AKRGVRHLYR--E---PSQVTQKYF 201 (315)
T ss_dssp HHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH-HHHTEEEEES--S---GGGCCSCEE
T ss_pred HHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH-HHcCCCEEEc--C---HHHhCCCcc
Confidence 999999 66667999999999999999999999999999999999 88998888 8999999985 2 233455999
Q ss_pred EEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeec------CCH-------HHHHHHHHHH
Q 018246 250 YIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNV------GGM-------KETQEMLDFC 316 (359)
Q Consensus 250 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~------~~~-------~~~~~~~~~l 316 (359)
+||||+|+.. +..++++|+++|+++.+|.......++ .+.+++.+..... ... +.++++++++
T Consensus 202 vv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (315)
T 3goh_A 202 AIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDP---AFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLI 277 (315)
T ss_dssp EEECC--------TTGGGEEEEEEEEEECCC-------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccc---hhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHH
Confidence 9999999987 688999999999999997654322222 2234444443322 222 2478899999
Q ss_pred HhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 317 AKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 317 ~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
++|++++.+ ++|||+++++||+.+. ...||+|+++++
T Consensus 278 ~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~~ 315 (315)
T 3goh_A 278 AQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLNE 315 (315)
T ss_dssp HTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESCC
T ss_pred HCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEecC
Confidence 999999877 8999999999999998 566999999864
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=382.13 Aligned_cols=312 Identities=20% Similarity=0.295 Sum_probs=262.4
Q ss_pred CCCcccceeeeeecCCCC-CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCC
Q 018246 6 ETEHPQKAIGWAARDNTG-TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~ 83 (359)
+++.+||++.+..++.+. .+++.+.+.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|+
T Consensus 22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~ 101 (357)
T 1zsy_A 22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS 101 (357)
T ss_dssp CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence 466778988876543321 2788889999999999999999999999999999987653 34689999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
+|++|++||||++.+. .+|+|+||+++|++.++++|+++++++||+
T Consensus 102 ~v~~~~vGdrV~~~~~----------------------------------~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~ 147 (357)
T 1zsy_A 102 NVTGLKPGDWVIPANA----------------------------------GLGTWRTEAVFSEEALIQVPSDIPLQSAAT 147 (357)
T ss_dssp TCCSCCTTCEEEESSS----------------------------------CSCCSBSEEEEEGGGEEEECSSSCHHHHHH
T ss_pred CCCCCCCCCEEEEcCC----------------------------------CCccceeEEecCHHHcEECCCCCCHHHHhh
Confidence 9999999999975431 249999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh----hHHHHHHHcCCcEEecCCCH
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK----KESEAISKLGADAFLVSSDP 238 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~----~~~~~~~~~g~~~v~~~~~~ 238 (359)
+++.++|||+++.....+++|++|||+|+ |++|++++|+|+..|++|++++++++ +.+.+ +++|+++++++++.
T Consensus 148 l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~-~~lGa~~vi~~~~~ 226 (357)
T 1zsy_A 148 LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRL-KSLGAEHVITEEEL 226 (357)
T ss_dssp TTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHH-HHTTCSEEEEHHHH
T ss_pred hcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHH-HhcCCcEEEecCcc
Confidence 99999999999988877899999999997 99999999999999998887775533 34555 89999999986532
Q ss_pred --HHHHHhcC---CccEEEECCCChhhHHHHHhccccCCEEEEecCCC-CCeeeCHHHHHhcCcEEEEeecCC-------
Q 018246 239 --AKVKAAMG---TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-KPLEVPIFALVGARRLVGGSNVGG------- 305 (359)
Q Consensus 239 --~~~~~~~~---~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~k~~~i~g~~~~~------- 305 (359)
+.+.+++. ++|+||||+|+.. ...++++++++|+++.+|... ....++...++.|++++.|+....
T Consensus 227 ~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 305 (357)
T 1zsy_A 227 RRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSP 305 (357)
T ss_dssp HSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCH
T ss_pred hHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCH
Confidence 22333332 5999999999877 567899999999999998644 356677778888999999986542
Q ss_pred ---HHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 306 ---MKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 306 ---~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.+.++++++++++|++++.+ ++|||+++++||+.+.+++..||+|+++
T Consensus 306 ~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 357 (357)
T 1zsy_A 306 DQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM 357 (357)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence 13478899999999998876 8999999999999999888789999974
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-52 Score=385.14 Aligned_cols=310 Identities=15% Similarity=0.194 Sum_probs=263.1
Q ss_pred CCcccceeeee--ec-CCCCCccceee---------ecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCccccc
Q 018246 7 TEHPQKAIGWA--AR-DNTGTFSPFHF---------SRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHE 73 (359)
Q Consensus 7 ~~~~~~~~~~~--~~-~~~~~~~~~~~---------~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e 73 (359)
++.+||++++. .+ +.++.+++.++ +.|+|+++||||||++++||++|++.+.|.++ ...+|.++|||
T Consensus 7 ~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E 86 (349)
T 3pi7_A 7 IPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFE 86 (349)
T ss_dssp CCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCSE
T ss_pred CchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccce
Confidence 56789999887 44 36677899888 99999999999999999999999999999765 34679999999
Q ss_pred ccEEEEEeCCCC-CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEEC
Q 018246 74 IVGTVTKVGNNV-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 74 ~~G~V~~vG~~v-~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~l 152 (359)
++|+|+++|++| ++|++||||++.. |...+|+|+||+++|++.++++
T Consensus 87 ~~G~V~~vG~~v~~~~~vGdrV~~~~--------------------------------g~~~~G~~aey~~v~~~~~~~i 134 (349)
T 3pi7_A 87 GVGTIVAGGDEPYAKSLVGKRVAFAT--------------------------------GLSNWGSWAEYAVAEAAACIPL 134 (349)
T ss_dssp EEEEEEEECSSHHHHHHTTCEEEEEC--------------------------------TTSSCCSSBSEEEEEGGGEEEC
T ss_pred EEEEEEEECCCccCCCCCCCEEEEec--------------------------------cCCCCccceeeEeechHHeEEC
Confidence 999999999999 9999999998653 2245699999999999999999
Q ss_pred CCCCCccccccccchhhhhhhHhHhcCCCCCC-CEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc
Q 018246 153 PDNMPLDAGAPLLCAGITVYSPMKYYGMTEPG-KHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD 230 (359)
Q Consensus 153 p~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~ 230 (359)
|+++++++||++++.++|||+++.... ++| ++|||+| +|++|++++|+|++.|++|+++++++++++.+ +++|++
T Consensus 135 P~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~~Ga~ 211 (349)
T 3pi7_A 135 LDTVRDEDGAAMIVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALL-KDIGAA 211 (349)
T ss_dssp CTTCCC--GGGSSHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHH-HHHTCS
T ss_pred CCCCCHHHHhhccccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCC
Confidence 999999999999999999997776655 555 7888884 69999999999999999999999999999888 899999
Q ss_pred EEecCCCHHH---HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCH-HHHHhcCcEEEEeec
Q 018246 231 AFLVSSDPAK---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPI-FALVGARRLVGGSNV 303 (359)
Q Consensus 231 ~v~~~~~~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-~~~~~k~~~i~g~~~ 303 (359)
+++|+++.+. +.++++ ++|++|||+|+.. +..++++++++|+++.+|.... ...++. ..++.|++++.|+..
T Consensus 212 ~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~ 290 (349)
T 3pi7_A 212 HVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWL 290 (349)
T ss_dssp EEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCH
T ss_pred EEEECCcHHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEe
Confidence 9999877543 444443 8999999999987 7899999999999999996553 456777 788899999999876
Q ss_pred CC---------HHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 304 GG---------MKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 304 ~~---------~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
.. .++++++++++++|++++.+ ++|||+++++||+. .++...||+||++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~-~~~~~~gKvvl~p 349 (349)
T 3pi7_A 291 SEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPA-ELTKPNGKVFIRP 349 (349)
T ss_dssp HHHHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHH-HHTSSSSCEEEEC
T ss_pred hhhhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHH-HhCCCCceEEEeC
Confidence 54 35588888999999998877 89999999999994 4455669999974
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=381.78 Aligned_cols=310 Identities=19% Similarity=0.274 Sum_probs=268.2
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..++++..+++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++| +++|+
T Consensus 1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~ 78 (324)
T 3nx4_A 1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH 78 (324)
T ss_dssp CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence 78888888777767999999999999999999999999999999999998763 5679999999999999998 57899
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+.. .|...+|+|+||+++|+++++++|+++++++||++++.+.
T Consensus 79 vGdrV~~~~~~-----------------------------~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 129 (324)
T 3nx4_A 79 AGQEVLLTGWG-----------------------------VGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGF 129 (324)
T ss_dssp TTCEEEEECTT-----------------------------BTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEcccc-----------------------------cCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHH
Confidence 99999865310 1234569999999999999999999999999999999999
Q ss_pred hhhhHhHhc--CCCCC--CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh
Q 018246 170 TVYSPMKYY--GMTEP--GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA 244 (359)
Q Consensus 170 ta~~~l~~~--~~~~~--g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~ 244 (359)
|||+++... ..+++ |+ |||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++|+++.+.++++
T Consensus 130 ta~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~~ 207 (324)
T 3nx4_A 130 TAMLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL-KSLGANRILSRDEFAESRPL 207 (324)
T ss_dssp HHHHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTCSEEEEGGGSSCCCSS
T ss_pred HHHHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhcCCCEEEecCCHHHHHhh
Confidence 999888643 33455 45 999997 9999999999999999999999999999888 89999999988764433333
Q ss_pred c-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH------HHHHHHHHHH
Q 018246 245 M-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM------KETQEMLDFC 316 (359)
Q Consensus 245 ~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~------~~~~~~~~~l 316 (359)
+ +++|++||++|++. ++.++++++++|+++.+|...+ ..+++...++.|++++.|+..... +.++++++++
T Consensus 208 ~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 286 (324)
T 3nx4_A 208 EKQLWAGAIDTVGDKV-LAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDL 286 (324)
T ss_dssp CCCCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHS
T ss_pred cCCCccEEEECCCcHH-HHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHH
Confidence 3 38999999999874 9999999999999999998765 357777888899999999865432 4588889999
Q ss_pred HhCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 317 AKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 317 ~~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
++|++++..++|+|+++++||+.+.+++..||+|++++
T Consensus 287 ~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~ 324 (324)
T 3nx4_A 287 PESFYAQAATEITLADAPKFADAIINNQVQGRTLVKIK 324 (324)
T ss_dssp CHHHHHHHEEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred HcCCCCCCceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence 99999877889999999999999999998999999875
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-51 Score=378.33 Aligned_cols=312 Identities=18% Similarity=0.249 Sum_probs=266.7
Q ss_pred CCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCC
Q 018246 6 ETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~ 84 (359)
..+.+||++.+..++.+..+++.+++.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus 18 ~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~~ 97 (354)
T 2j8z_A 18 LYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPG 97 (354)
T ss_dssp ---CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECSC
T ss_pred cchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECCC
Confidence 4667799988876555567889999999999999999999999999999999987653 346899999999999999999
Q ss_pred C-CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccc
Q 018246 85 V-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAP 163 (359)
Q Consensus 85 v-~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~ 163 (359)
| ++|++||||+... .+|+|+||+++|++.++++|+++++++||+
T Consensus 98 v~~~~~vGdrV~~~~-----------------------------------~~G~~aey~~v~~~~~~~iP~~ls~~~aa~ 142 (354)
T 2j8z_A 98 CQGHWKIGDTAMALL-----------------------------------PGGGQAQYVTVPEGLLMPIPEGLTLTQAAA 142 (354)
T ss_dssp C--CCCTTCEEEEEC-----------------------------------SSCCSBSEEEEEGGGEEECCTTCCHHHHTT
T ss_pred cCCCCCCCCEEEEec-----------------------------------CCCcceeEEEeCHHHcEECCCCCCHHHHHh
Confidence 9 9999999997542 349999999999999999999999999999
Q ss_pred ccchhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---
Q 018246 164 LLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA--- 239 (359)
Q Consensus 164 l~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--- 239 (359)
+++++.|||+++.....+++|++|||+| +|++|++++|+++..|++|+++++++++++.+ +++|++.++|+++.+
T Consensus 143 l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 221 (354)
T 2j8z_A 143 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLGAAAGFNYKKEDFSE 221 (354)
T ss_dssp SHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHH
T ss_pred ccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCChHHHH
Confidence 9999999999998777779999999998 59999999999999999999999999999888 899999999887643
Q ss_pred HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCH-HHHHhcCcEEEEeecCCHH-H------
Q 018246 240 KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPI-FALVGARRLVGGSNVGGMK-E------ 308 (359)
Q Consensus 240 ~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-~~~~~k~~~i~g~~~~~~~-~------ 308 (359)
.+.+.+. ++|++|||+|+.. +..++++|+++|+++.+|...+ ...++. ..++.|++++.|+...... +
T Consensus 222 ~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 300 (354)
T 2j8z_A 222 ATLKFTKGAGVNLILDCIGGSY-WEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLV 300 (354)
T ss_dssp HHHHHTTTSCEEEEEESSCGGG-HHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCchH-HHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHH
Confidence 3334443 7999999999975 8999999999999999997654 356777 7788899999998765421 1
Q ss_pred ---HHHHHHHHHhC---CCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 309 ---TQEMLDFCAKH---NIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 309 ---~~~~~~~l~~g---~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
++++++++++| ++++.+ ++|||+++++||+.+.+++..||+|++++
T Consensus 301 ~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 353 (354)
T 2j8z_A 301 NAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELP 353 (354)
T ss_dssp HHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred HHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence 24578888999 888877 89999999999999998887899999885
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-51 Score=377.06 Aligned_cols=309 Identities=19% Similarity=0.203 Sum_probs=262.5
Q ss_pred CcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC--CCCCCCcccccccEEEEEeCCCC
Q 018246 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG--VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~--~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
+.+||++++..++++ +++.+++.|+|+++||||||.+++||++|++++.|..+ ...+|.++|||++|+|+++|++|
T Consensus 5 ~~~mka~~~~~~~~~--l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v 82 (343)
T 3gaz_A 5 TPTMIAAVVEEANGP--FVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEV 82 (343)
T ss_dssp -CEEEEEEECSTTCC--EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTC
T ss_pred chhheEEEEecCCCc--eEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCC
Confidence 456888887754333 99999999999999999999999999999999988643 25678999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
++|++||||+.... +. ...+|+|+||+++|++.++++|+++++++|++++
T Consensus 83 ~~~~vGdrV~~~~~------------g~------------------~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~ 132 (343)
T 3gaz_A 83 DSFRVGDAVFGLTG------------GV------------------GGLQGTHAQFAAVDARLLASKPAALTMRQASVLP 132 (343)
T ss_dssp CSCCTTCEEEEECC------------SS------------------TTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSH
T ss_pred CCCCCCCEEEEEeC------------CC------------------CCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhh
Confidence 99999999975321 00 0145999999999999999999999999999999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCH---HHH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDP---AKV 241 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~---~~~ 241 (359)
+++.|||+++.....+++|++|||+| +|++|++++|+|+..|++|+++ +++++++.+ +++|++. ++ ++. +.+
T Consensus 133 ~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~lGa~~-i~-~~~~~~~~~ 208 (343)
T 3gaz_A 133 LVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDLGATP-ID-ASREPEDYA 208 (343)
T ss_dssp HHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHHTSEE-EE-TTSCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHcCCCE-ec-cCCCHHHHH
Confidence 99999999997777779999999999 5999999999999999999999 888888887 8999988 66 332 334
Q ss_pred HHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCH-----------HH
Q 018246 242 KAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM-----------KE 308 (359)
Q Consensus 242 ~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~-----------~~ 308 (359)
.+.+. ++|++|||+|+.. +..++++|+++|+++.+|... .++...++.|++++.++..... ++
T Consensus 209 ~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 284 (343)
T 3gaz_A 209 AEHTAGQGFDLVYDTLGGPV-LDASFSAVKRFGHVVSCLGWG---THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEM 284 (343)
T ss_dssp HHHHTTSCEEEEEESSCTHH-HHHHHHHEEEEEEEEESCCCS---CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHH
T ss_pred HHHhcCCCceEEEECCCcHH-HHHHHHHHhcCCeEEEEcccC---ccccchhhhcCcEEEEEEeccchhcccchHHHHHH
Confidence 44443 8999999999865 999999999999999998764 4466777889999999776432 56
Q ss_pred HHHHHHHHHhCCCcccE--EEEccccHHHHHHHHHcCCc----cEEEEEEcCCC
Q 018246 309 TQEMLDFCAKHNIAADI--ELVRMDQINTAMERLAKSDV----KYRFVIDVGNS 356 (359)
Q Consensus 309 ~~~~~~~l~~g~i~~~~--~~~~l~~~~~a~~~~~~~~~----~gkvvv~~~~~ 356 (359)
++++++++++|++++.+ ++|||+++++||+.+.+++. +||+|+++..+
T Consensus 285 ~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~~~ 338 (343)
T 3gaz_A 285 LREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVEGH 338 (343)
T ss_dssp HHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC--
T ss_pred HHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEeccc
Confidence 89999999999998876 48999999999999998765 58999998765
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=373.74 Aligned_cols=309 Identities=21% Similarity=0.336 Sum_probs=264.5
Q ss_pred CcccceeeeeecCCCCCccc-eeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCC
Q 018246 8 EHPQKAIGWAARDNTGTFSP-FHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
+.+||++.+..++.+..+++ .+++.|+|+++||+|||.+++||++|++++.|.++ ...+|.++|||++|+|+++|++|
T Consensus 27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v 106 (351)
T 1yb5_A 27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA 106 (351)
T ss_dssp -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence 34689988876666667888 78999999999999999999999999999998764 34578999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
++|++||||++.+ ..+|+|+||+++|++.++++|+++++++||+++
T Consensus 107 ~~~~vGdrV~~~~----------------------------------~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~ 152 (351)
T 1yb5_A 107 SAFKKGDRVFTSS----------------------------------TISGGYAEYALAADHTVYKLPEKLDFKQGAAIG 152 (351)
T ss_dssp TTCCTTCEEEESC----------------------------------CSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTH
T ss_pred CCCCCCCEEEEeC----------------------------------CCCCcceeEEEECHHHeEECCCCCCHHHHHhhh
Confidence 9999999997543 124999999999999999999999999999999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---H
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---V 241 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~ 241 (359)
+++.|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|++.++|+++.+. +
T Consensus 153 ~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~d~~~~~~~~~~ 231 (351)
T 1yb5_A 153 IPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHEVFNHREVNYIDKI 231 (351)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSTTHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHcCCCEEEeCCCchHHHHH
Confidence 999999999987777799999999997 9999999999999999999999999998877 8999999998876543 3
Q ss_pred HHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeec--CCHHHHH----HHH
Q 018246 242 KAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNV--GGMKETQ----EML 313 (359)
Q Consensus 242 ~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~--~~~~~~~----~~~ 313 (359)
.+.++ ++|++||++|+.. +..++++++++|+++.+|.. +...++...++.|++++.|+.. ....++. .+.
T Consensus 232 ~~~~~~~~~D~vi~~~G~~~-~~~~~~~l~~~G~iv~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~ 309 (351)
T 1yb5_A 232 KKYVGEKGIDIIIEMLANVN-LSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQ 309 (351)
T ss_dssp HHHHCTTCEEEEEESCHHHH-HHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTCEEEECCGGGCCHHHHHHHHHHHH
T ss_pred HHHcCCCCcEEEEECCChHH-HHHHHHhccCCCEEEEEecC-CCCccCHHHHHhCCcEEEEEEeecCCHHHHHHHHHHHH
Confidence 33333 7999999999865 88999999999999999965 3466777788899999999854 2345554 455
Q ss_pred HHHHhCCCcccE-EEEccccHHHHHHH-HHcCCccEEEEEEc
Q 018246 314 DFCAKHNIAADI-ELVRMDQINTAMER-LAKSDVKYRFVIDV 353 (359)
Q Consensus 314 ~~l~~g~i~~~~-~~~~l~~~~~a~~~-~~~~~~~gkvvv~~ 353 (359)
+++.+|++++.+ ++|||+++++||+. +.++...||+|+++
T Consensus 310 ~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~ 351 (351)
T 1yb5_A 310 AGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL 351 (351)
T ss_dssp HHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred HHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 577889998877 89999999999998 55566679999974
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-51 Score=376.52 Aligned_cols=311 Identities=17% Similarity=0.222 Sum_probs=263.0
Q ss_pred cccceeeeeecCCC-CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCC
Q 018246 9 HPQKAIGWAARDNT-GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
.+||++++..++++ +.+++.+++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|+
T Consensus 3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v~ 82 (340)
T 3gms_A 3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVS 82 (340)
T ss_dssp CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTSC
T ss_pred cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCCC
Confidence 36899988876655 45889999999999999999999999999999999998763 57799999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
+|++||||+.. ..+|+|+||+++|++.++++|+++++++||++++
T Consensus 83 ~~~vGdrV~~~-----------------------------------~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~ 127 (340)
T 3gms_A 83 RELIGKRVLPL-----------------------------------RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYI 127 (340)
T ss_dssp GGGTTCEEEEC-----------------------------------SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSH
T ss_pred CCCCCCEEEec-----------------------------------CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcc
Confidence 99999999743 2459999999999999999999999999999999
Q ss_pred hhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HHH
Q 018246 167 AGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KVK 242 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~ 242 (359)
.++|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++++.+ +++|+++++|+++.+ .+.
T Consensus 128 ~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lga~~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 128 NPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEEL-LRLGAAYVIDTSTAPLYETVM 206 (340)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEETTTSCHHHHHH
T ss_pred hHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HhCCCcEEEeCCcccHHHHHH
Confidence 99999999988888899999999997 5999999999999999999999999999888 789999999887643 344
Q ss_pred HhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHH-hcCcEEEEeecC----------CHHHH
Q 018246 243 AAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALV-GARRLVGGSNVG----------GMKET 309 (359)
Q Consensus 243 ~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~k~~~i~g~~~~----------~~~~~ 309 (359)
+.++ ++|++|||+|+.. ...++++|+++|+++.+|...+ ..++...+. ..++++..+... ...++
T Consensus 207 ~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (340)
T 3gms_A 207 ELTNGIGADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSG-IQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETF 284 (340)
T ss_dssp HHTTTSCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTS-CCCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHH
T ss_pred HHhCCCCCcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCC-CCCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHH
Confidence 4443 7999999999987 6667799999999999998654 244444443 244555443321 13568
Q ss_pred HHHHHHHHhCCCcc-cE-EEEccccHHHHHHHHHcCCc-cEEEEEEcCCCc
Q 018246 310 QEMLDFCAKHNIAA-DI-ELVRMDQINTAMERLAKSDV-KYRFVIDVGNSK 357 (359)
Q Consensus 310 ~~~~~~l~~g~i~~-~~-~~~~l~~~~~a~~~~~~~~~-~gkvvv~~~~~~ 357 (359)
+++++++++|++++ .+ ++|||+++++||+.+.+++. .||+++++.++.
T Consensus 285 ~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~~~ 335 (340)
T 3gms_A 285 RHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSYEGH 335 (340)
T ss_dssp HHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC---
T ss_pred HHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEeccc
Confidence 99999999999986 34 89999999999999999875 499999998864
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=372.70 Aligned_cols=309 Identities=18% Similarity=0.217 Sum_probs=264.0
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC-CC--CCCCCcccccccEEEEEeCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW-GV--TNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~--~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
||++.+..++.++.+++.+.+.|+|+++||+|||.+++||++|++++.|.+ +. ..+|.++|||++|+|+++|++|++
T Consensus 2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (333)
T 1wly_A 2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD 81 (333)
T ss_dssp CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence 788887766656678899999999999999999999999999999998876 22 457899999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccc--ccccc
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDA--GAPLL 165 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~--aa~l~ 165 (359)
|++||||++.+. .+|+|+||+++|++.++++|+++++++ |++++
T Consensus 82 ~~~GdrV~~~~~----------------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~ 127 (333)
T 1wly_A 82 FTVGERVCTCLP----------------------------------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLM 127 (333)
T ss_dssp CCTTCEEEECSS----------------------------------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHH
T ss_pred CCCCCEEEEecC----------------------------------CCCcceeEEEecHHHcEeCCCCCChHHhCccchh
Confidence 999999964321 149999999999999999999999999 99999
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH---HH
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA---KV 241 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~---~~ 241 (359)
+++.|||+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++.+.+ +++|+++++|+++.+ .+
T Consensus 128 ~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~i 206 (333)
T 1wly_A 128 LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA-RKLGCHHTINYSTQDFAEVV 206 (333)
T ss_dssp HHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHH
T ss_pred hhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCCEEEECCCHHHHHHH
Confidence 999999999987777799999999996 9999999999999999999999999998888 789999998876643 33
Q ss_pred HHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHH-HHHhcC--cEEEEeecC---CH----HH
Q 018246 242 KAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIF-ALVGAR--RLVGGSNVG---GM----KE 308 (359)
Q Consensus 242 ~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~-~~~~k~--~~i~g~~~~---~~----~~ 308 (359)
.+.+ .++|++||++|+. .++.++++++++|+++.+|...+ ...++.. .++.|+ +++.|+... .. ++
T Consensus 207 ~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ 285 (333)
T 1wly_A 207 REITGGKGVDVVYDSIGKD-TLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEG 285 (333)
T ss_dssp HHHHTTCCEEEEEECSCTT-THHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHH
T ss_pred HHHhCCCCCeEEEECCcHH-HHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHH
Confidence 3443 3799999999994 49999999999999999997653 3456776 777888 999887541 22 35
Q ss_pred HHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 309 TQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 309 ~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
++++++++++|++++.+ ++|||+++++||+.+.+++..||+|+.+++
T Consensus 286 ~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~ 333 (333)
T 1wly_A 286 SKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA 333 (333)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred HHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 88999999999999877 899999999999999988888999998753
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=370.31 Aligned_cols=316 Identities=16% Similarity=0.142 Sum_probs=257.3
Q ss_pred CCcccceeeeeecCCCCCccce-eeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPF-HFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV 85 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v 85 (359)
++.+||++++. .++.+++. +++.|+|+++||||||.+++||++|++++.|. ..+|.++|||++|+|+++|++|
T Consensus 8 ~p~~mkA~v~~---~~~~l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v 81 (371)
T 3gqv_A 8 PPPQQTALTVN---DHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDV 81 (371)
T ss_dssp CCSCEEEEEEC---TTSCEEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTC
T ss_pred CchhceeEEEc---CCCceEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCC
Confidence 45678888765 44679998 99999999999999999999999999998763 3468999999999999999999
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
++|++||||+.. |..|..+ ...+|+|+||+++|++.++++|+++++++|++++
T Consensus 82 ~~~~~GdrV~~~--------~~~~~~~-------------------~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~ 134 (371)
T 3gqv_A 82 THIQVGDRVYGA--------QNEMCPR-------------------TPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALP 134 (371)
T ss_dssp CSCCTTCEEEEE--------CCTTCTT-------------------CTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSH
T ss_pred CCCCCCCEEEEe--------ccCCCCC-------------------CCCCCcCcCeEEEchhheEECCCCCCHHHHhhhh
Confidence 999999999643 3333332 1346999999999999999999999999999999
Q ss_pred chhhhhhhHhHhc-CCC-----------CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE
Q 018246 166 CAGITVYSPMKYY-GMT-----------EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF 232 (359)
Q Consensus 166 ~~~~ta~~~l~~~-~~~-----------~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v 232 (359)
+++.|||+++.+. ..+ ++|++|||+|+ |++|++++|+|+..|++|+++. ++++++.+ +++|++++
T Consensus 135 ~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~-~~lGa~~v 212 (371)
T 3gqv_A 135 AGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLA-KSRGAEEV 212 (371)
T ss_dssp HHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHTTCSEE
T ss_pred hhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHH-HHcCCcEE
Confidence 9999999999776 442 89999999998 9999999999999999999987 78888877 89999999
Q ss_pred ecCCCHH---HHHHhcC-CccEEEECCCChhhHHHHHhcc-ccCCEEEEecCCCC------Ceee---CHHHHHhcCcEE
Q 018246 233 LVSSDPA---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLL-KVNGKLVTVGLPEK------PLEV---PIFALVGARRLV 298 (359)
Q Consensus 233 ~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~------~~~~---~~~~~~~k~~~i 298 (359)
+|+++.+ .+.++++ ++|+||||+|+..+++.++++| +++|+++.+|.... .... ....++.|++++
T Consensus 213 i~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 292 (371)
T 3gqv_A 213 FDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTW 292 (371)
T ss_dssp EETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSC
T ss_pred EECCCchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccc
Confidence 9987754 3445554 6999999999987799999999 59999999986442 1222 234567789998
Q ss_pred EEeecCC--HH-------HHHHHHHHHHhCCCcccE---EEEccccHHHHHHHHHcCCccE-EEEEEcCCCc
Q 018246 299 GGSNVGG--MK-------ETQEMLDFCAKHNIAADI---ELVRMDQINTAMERLAKSDVKY-RFVIDVGNSK 357 (359)
Q Consensus 299 ~g~~~~~--~~-------~~~~~~~~l~~g~i~~~~---~~~~l~~~~~a~~~~~~~~~~g-kvvv~~~~~~ 357 (359)
.|+.... .. .++++++++++|++++.. +.|||+++++||+.+.+++..| |+|+++++..
T Consensus 293 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~~~~~~ 364 (371)
T 3gqv_A 293 PAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVRLEGPL 364 (371)
T ss_dssp STTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEEECCC-
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEEeCCcc
Confidence 8875432 21 245888999999998753 5699999999999999998877 7788887754
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-50 Score=372.70 Aligned_cols=309 Identities=17% Similarity=0.235 Sum_probs=261.1
Q ss_pred cccceeeeeecCCC-CCccceeeecCCCC--CCeEEEEEeeeecchhhhhhhccCCCC-CCCC---------Cccccccc
Q 018246 9 HPQKAIGWAARDNT-GTFSPFHFSRRETG--ADDVTIKILFCGICHSDLHCARNEWGV-TNYP---------IVPGHEIV 75 (359)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p---------~~~G~e~~ 75 (359)
.+||++.+..++.+ ..+++++++.|+|+ ++||+|||.+++||++|++.+.|.++. ..+| .++|||++
T Consensus 2 ~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~~ 81 (364)
T 1gu7_A 2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL 81 (364)
T ss_dssp EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred ceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCceeE
Confidence 46888887654332 23888889888877 999999999999999999999987653 3445 89999999
Q ss_pred EEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCC-
Q 018246 76 GTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD- 154 (359)
Q Consensus 76 G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~- 154 (359)
|+|+++|++|++|++||||++.+. .+|+|+||+++|++.++++|+
T Consensus 82 G~V~~vG~~v~~~~vGdrV~~~~~----------------------------------~~G~~aey~~v~~~~~~~~P~~ 127 (364)
T 1gu7_A 82 FEVIKVGSNVSSLEAGDWVIPSHV----------------------------------NFGTWRTHALGNDDDFIKLPNP 127 (364)
T ss_dssp EEEEEECTTCCSCCTTCEEEESSS----------------------------------CCCCSBSEEEEEGGGEEEECCH
T ss_pred EEEEEeCCCCCcCCCCCEEEecCC----------------------------------CCCcchheEecCHHHeEEcCCc
Confidence 999999999999999999975431 349999999999999999998
Q ss_pred ----------CCCccccccccchhhhhhhHhHhcCCCCCC-CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh---
Q 018246 155 ----------NMPLDAGAPLLCAGITVYSPMKYYGMTEPG-KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK--- 219 (359)
Q Consensus 155 ----------~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g-~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~--- 219 (359)
++++++||++++++.|||+++.+...+++| ++|||+|+ |++|++++|+|+..|++|+++++++++
T Consensus 128 ~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~ 207 (364)
T 1gu7_A 128 AQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE 207 (364)
T ss_dssp HHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred cccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHH
Confidence 899999999999999999999988777999 99999997 999999999999999999998876654
Q ss_pred -HHHHHHHcCCcEEecCCC---H---HHHHHhc----CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeC
Q 018246 220 -ESEAISKLGADAFLVSSD---P---AKVKAAM----GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVP 287 (359)
Q Consensus 220 -~~~~~~~~g~~~v~~~~~---~---~~~~~~~----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~ 287 (359)
.+.+ +++|+++++++++ . +.+.+++ +++|+||||+|+.. ...++++++++|+++.+|.... ...++
T Consensus 208 ~~~~~-~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~ 285 (364)
T 1gu7_A 208 VVASL-KELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIP 285 (364)
T ss_dssp HHHHH-HHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEEC
T ss_pred HHHHH-HhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccCCEEEEecCCCCCCcccC
Confidence 4556 8999999998764 2 2455554 38999999999987 4488999999999999997653 56788
Q ss_pred HHHHHhcCcEEEEeecCC---------HHHHHHHHHHHHhCCCcccE-EEEccc---cHHHHHHHHHcCCccEEEEEEc
Q 018246 288 IFALVGARRLVGGSNVGG---------MKETQEMLDFCAKHNIAADI-ELVRMD---QINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 288 ~~~~~~k~~~i~g~~~~~---------~~~~~~~~~~l~~g~i~~~~-~~~~l~---~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
...++.|++++.|+.... ..+++++++++++|++++.. .+++++ ++++||+.+.+++..||+|+++
T Consensus 286 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 364 (364)
T 1gu7_A 286 TSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 364 (364)
T ss_dssp HHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred HHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence 888888999999987643 25689999999999998754 667664 9999999999888789999974
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=364.93 Aligned_cols=307 Identities=20% Similarity=0.262 Sum_probs=263.5
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++.+..++.+..+++.+.+.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|++
T Consensus 2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~ 81 (327)
T 1qor_A 2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA 81 (327)
T ss_dssp CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence 78888776655667888999999999999999999999999999999987765567899999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGIT 170 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~t 170 (359)
||||. .+. ..+|+|+||+++|++.++++|+++++++|+++++++.|
T Consensus 82 GdrV~-~~g---------------------------------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~t 127 (327)
T 1qor_A 82 GDRVV-YAQ---------------------------------SALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLT 127 (327)
T ss_dssp TCEEE-ESC---------------------------------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEE-ECC---------------------------------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHH
Confidence 99994 320 12499999999999999999999999999999999999
Q ss_pred hhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhcC
Q 018246 171 VYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAMG 246 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~ 246 (359)
||+++.....+++|++|||+| +|++|++++|+++..|++|+++++++++.+.+ +++|+++++++++.+. +.+.+.
T Consensus 128 a~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 128 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAGAWQVINYREEDLVERLKEITG 206 (327)
T ss_dssp HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEEEECCCccHHHHHHHHhC
Confidence 999998777779999999998 49999999999999999999999999998888 7799999998766433 333332
Q ss_pred --CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhc-CcEEEEeec----CC----HHHHHHHHH
Q 018246 247 --TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGA-RRLVGGSNV----GG----MKETQEMLD 314 (359)
Q Consensus 247 --~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k-~~~i~g~~~----~~----~~~~~~~~~ 314 (359)
++|++||++|. ..++.++++++++|+++.+|...+. ..++...++.| ++++.+... .. .+.++++++
T Consensus 207 ~~~~D~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (327)
T 1qor_A 207 GKKVRVVYDSVGR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFS 285 (327)
T ss_dssp TCCEEEEEECSCG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCch-HHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHH
Confidence 79999999994 4599999999999999999976543 45777777778 888876433 11 345789999
Q ss_pred HHHhCCCcccE---EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 315 FCAKHNIAADI---ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 315 ~l~~g~i~~~~---~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++|++++.+ ++|+|+++++||+.+.+++..||+|+++
T Consensus 286 l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 327 (327)
T 1qor_A 286 LIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_dssp HHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred HHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 99999998765 5999999999999999888889999864
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=364.61 Aligned_cols=314 Identities=19% Similarity=0.231 Sum_probs=258.2
Q ss_pred CCCcccceeeeeecCCCCCccc-eeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCC---------------CCCCCC
Q 018246 6 ETEHPQKAIGWAARDNTGTFSP-FHFSRRET-GADDVTIKILFCGICHSDLHCARNEWG---------------VTNYPI 68 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~---------------~~~~p~ 68 (359)
.++.+|+++.+..++.+..+++ .+.+.|.+ +++||||||.++|||++|++.+.|..+ ...+|.
T Consensus 17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~ 96 (375)
T 2vn8_A 17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL 96 (375)
T ss_dssp -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence 3556788888776655667888 88899985 999999999999999999999988531 123789
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc
Q 018246 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~ 148 (359)
++|||++|+|+++|++|++|++||||++.+. ...+|+|+||+++|++.
T Consensus 97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~--------------------------------~~~~G~~aey~~v~~~~ 144 (375)
T 2vn8_A 97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVP--------------------------------PWKQGTLSEFVVVSGNE 144 (375)
T ss_dssp CCCCEEEEEEEEECTTCCSCCTTCEEEEECC--------------------------------TTSCCSSBSEEEEEGGG
T ss_pred ccceeeeEEEEEeCCCCCCCCCCCEEEEecC--------------------------------CCCCccceeEEEEcHHH
Confidence 9999999999999999999999999986541 12359999999999999
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcCC----CCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHH
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGM----TEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~----~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~ 223 (359)
++++|+++++++||++++++.|||+++..... +++|++|||+| +|++|++++|+|+..|++|++++ ++++.+.+
T Consensus 145 ~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~ 223 (375)
T 2vn8_A 145 VSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV 223 (375)
T ss_dssp EEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH
T ss_pred eeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH
Confidence 99999999999999999999999999987666 79999999999 59999999999999999999988 57788777
Q ss_pred HHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCCh-hhHHHHHhccccCCEEEEecCCCCC-ee---eCH------HH
Q 018246 224 ISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAV-HSLAPLLGLLKVNGKLVTVGLPEKP-LE---VPI------FA 290 (359)
Q Consensus 224 ~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~-~~---~~~------~~ 290 (359)
+++|+++++|+++.+..+++. .++|++||++|+. .++..++++++++|+++.+|..... .. ++. ..
T Consensus 224 -~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~ 302 (375)
T 2vn8_A 224 -RKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVT 302 (375)
T ss_dssp -HHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHH
T ss_pred -HHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehh
Confidence 899999999987654444443 4899999999998 4568899999999999999875421 10 111 12
Q ss_pred HHh-------cCcEEEEeec-CCHHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 291 LVG-------ARRLVGGSNV-GGMKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 291 ~~~-------k~~~i~g~~~-~~~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++. ++..+.+... ...++++++++++++|++++.+ ++|||+++++||+.+.+++..||+|+++
T Consensus 303 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 374 (375)
T 2vn8_A 303 VGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV 374 (375)
T ss_dssp HHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred hccccccccccCcceEEEEeCCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence 222 4455544332 2456789999999999999877 7999999999999999988889999976
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=358.04 Aligned_cols=303 Identities=18% Similarity=0.207 Sum_probs=261.9
Q ss_pred cccceeeeeec--C--CCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCccccc----ccEEEEE
Q 018246 9 HPQKAIGWAAR--D--NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHE----IVGTVTK 80 (359)
Q Consensus 9 ~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e----~~G~V~~ 80 (359)
.+||++++..+ + .++.+++.+.+.|+|+++||||||++++||++|++.+.+... ..+|.++||| ++|+|++
T Consensus 6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~~ 84 (336)
T 4b7c_A 6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVLV 84 (336)
T ss_dssp CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEEE
T ss_pred ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEEe
Confidence 46888888742 2 467899999999999999999999999999999988876432 3457777877 7999999
Q ss_pred eCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccc
Q 018246 81 VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDA 160 (359)
Q Consensus 81 vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~ 160 (359)
. ++++|++||||++. |+|+||+++|+++++++|+++++.+
T Consensus 85 ~--~v~~~~vGdrV~~~--------------------------------------G~~aey~~v~~~~~~~~P~~~~~~~ 124 (336)
T 4b7c_A 85 S--KHPGFQAGDYVNGA--------------------------------------LGVQDYFIGEPKGFYKVDPSRAPLP 124 (336)
T ss_dssp E--CSTTCCTTCEEEEE--------------------------------------CCSBSEEEECCTTCEEECTTTSCGG
T ss_pred c--CCCCCCCCCEEecc--------------------------------------CCceEEEEechHHeEEcCCCCCchH
Confidence 4 58899999999732 8999999999999999999998777
Q ss_pred c--ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 161 G--APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 161 a--a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
+ +++++++.|||+++.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+.+++|+++++|+++
T Consensus 125 ~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~ 204 (336)
T 4b7c_A 125 RYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKN 204 (336)
T ss_dssp GGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTT
T ss_pred HHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCC
Confidence 6 7899999999999988877899999999997 999999999999999999999999999988868999999998876
Q ss_pred HHH---HHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-------CeeeCHHHHHhcCcEEEEeecCCH
Q 018246 238 PAK---VKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-------PLEVPIFALVGARRLVGGSNVGGM 306 (359)
Q Consensus 238 ~~~---~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~k~~~i~g~~~~~~ 306 (359)
.+. +.+.++ ++|++||++|+.. +..++++++++|+++.+|.... ...++...++.|++++.|+..+.+
T Consensus 205 ~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 283 (336)
T 4b7c_A 205 EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDY 283 (336)
T ss_dssp SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGG
T ss_pred HHHHHHHHHhcCCCceEEEECCCcch-HHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhh
Confidence 533 334443 7999999999865 9999999999999999987551 135666778899999999887664
Q ss_pred -----HHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 307 -----KETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 307 -----~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++++++++++|++++.. ..+||+++++||+.+.+++..||+||++
T Consensus 284 ~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 336 (336)
T 4b7c_A 284 AQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV 336 (336)
T ss_dssp GGGHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred hhhhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 6789999999999999877 6789999999999999999889999975
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-49 Score=361.31 Aligned_cols=311 Identities=18% Similarity=0.292 Sum_probs=256.1
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
+||++++..++.+..+++.+.+.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++ ++++|
T Consensus 3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~~ 80 (328)
T 1xa0_A 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPRF 80 (328)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSSC
T ss_pred cceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCCC
Confidence 699998887654456889999999999999999999999999999999886542 357899999999999995 56889
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||||++.+.. .|...+|+|+||+++|++.++++|+++++++|+++++++
T Consensus 81 ~vGdrV~~~~~~-----------------------------~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~ 131 (328)
T 1xa0_A 81 REGDEVIATGYE-----------------------------IGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAG 131 (328)
T ss_dssp CTTCEEEEESTT-----------------------------BTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEcccc-----------------------------CCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhH
Confidence 999999764310 022346999999999999999999999999999999999
Q ss_pred hhhhhHhHhc--CCCCCCC-EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH--HHH
Q 018246 169 ITVYSPMKYY--GMTEPGK-HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA--KVK 242 (359)
Q Consensus 169 ~ta~~~l~~~--~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--~~~ 242 (359)
.|||.++... ..+++|+ +|||+|+ |++|++++|+|+..|++|+++++++++++.+ +++|+++++|+++.+ .+.
T Consensus 132 ~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~-~~lGa~~~i~~~~~~~~~~~ 210 (328)
T 1xa0_A 132 FTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKEVLAREDVMAERIR 210 (328)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSEEEECC--------
T ss_pred HHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCcEEEecCCcHHHHHH
Confidence 9999887532 4568886 9999997 9999999999999999999999999999888 889999999887542 233
Q ss_pred HhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeec--CCH----HHHHHHHH
Q 018246 243 AAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNV--GGM----KETQEMLD 314 (359)
Q Consensus 243 ~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~--~~~----~~~~~~~~ 314 (359)
.+.+ ++|++||++|+. .+..++++++++|+++.+|...+ ..+++...++.|++++.|+.. ... +.++.+++
T Consensus 211 ~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~ 289 (328)
T 1xa0_A 211 PLDKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAG 289 (328)
T ss_dssp -CCSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHT
T ss_pred HhcCCcccEEEECCcHH-HHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHH
Confidence 3333 799999999986 49999999999999999997654 456666778889999999743 222 23556666
Q ss_pred HHHhCCCcccEEEEccccHHHHHHHHHcCCccEEEEEEcC
Q 018246 315 FCAKHNIAADIELVRMDQINTAMERLAKSDVKYRFVIDVG 354 (359)
Q Consensus 315 ~l~~g~i~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~~ 354 (359)
+++++ +++.+++|||+++++||+.+.+++..||+|++++
T Consensus 290 ~~~~g-l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~ 328 (328)
T 1xa0_A 290 DLKPD-LERIAQEISLAELPQALKRILRGELRGRTVVRLA 328 (328)
T ss_dssp TTCCC-HHHHEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred HHHcC-CceeeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence 66667 7776799999999999999998888899999863
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=363.38 Aligned_cols=309 Identities=18% Similarity=0.274 Sum_probs=260.4
Q ss_pred CCcccceeeeeecCCC--CCccc-eeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeC
Q 018246 7 TEHPQKAIGWAARDNT--GTFSP-FHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVG 82 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG 82 (359)
++.+||++.+..++.+ +.+++ ++++.|+|+++||||||.+++||++|++.+.|.++ ...+|.++|||++|+|+++|
T Consensus 20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG 99 (362)
T 2c0c_A 20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG 99 (362)
T ss_dssp HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence 3557898887754332 35788 89999999999999999999999999999998764 24678999999999999999
Q ss_pred CCCC-CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccc
Q 018246 83 NNVS-KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAG 161 (359)
Q Consensus 83 ~~v~-~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~a 161 (359)
++|+ +|++||||++.. +|+|+||+++|++.++++|+. + .++
T Consensus 100 ~~V~~~~~vGdrV~~~~------------------------------------~G~~aey~~v~~~~~~~~P~~-~-~~a 141 (362)
T 2c0c_A 100 LSASARYTVGQAVAYMA------------------------------------PGSFAEYTVVPASIATPVPSV-K-PEY 141 (362)
T ss_dssp TTGGGTCCTTCEEEEEC------------------------------------SCCSBSEEEEEGGGCEECSSS-C-HHH
T ss_pred CCccCCCCCCCEEEEcc------------------------------------CCcceeEEEEcHHHeEECCCC-c-hHh
Confidence 9999 999999997542 399999999999999999996 3 467
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH-
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA- 239 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~- 239 (359)
++++++++|||+++.+...+++|++|||+| +|++|++++|+|+..|++|+++++++++++.+ +++|+++++++++.+
T Consensus 142 aal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~Ga~~~~~~~~~~~ 220 (362)
T 2c0c_A 142 LTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFL-KSLGCDRPINYKTEPV 220 (362)
T ss_dssp HTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTTSCH
T ss_pred hcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHcCCcEEEecCChhH
Confidence 788999999999998887789999999999 59999999999999999999999999998888 789999999876543
Q ss_pred --HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCe------ee---C-HHHHHhcCcEEEEeecCC-
Q 018246 240 --KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPL------EV---P-IFALVGARRLVGGSNVGG- 305 (359)
Q Consensus 240 --~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~---~-~~~~~~k~~~i~g~~~~~- 305 (359)
.+.+..+ ++|++|||+|+.. ++.++++++++|+++.+|...... .+ . ...++.|++++.|+....
T Consensus 221 ~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~ 299 (362)
T 2c0c_A 221 GTVLKQEYPEGVDVVYESVGGAM-FDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHY 299 (362)
T ss_dssp HHHHHHHCTTCEEEEEECSCTHH-HHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGGGC
T ss_pred HHHHHHhcCCCCCEEEECCCHHH-HHHHHHHHhcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhhhh
Confidence 3333333 7999999999854 899999999999999998754211 00 1 246678999999987643
Q ss_pred ----HHHHHHHHHHHHhCCCcccEE---------EEccccHHHHHHHHHcCCccEEEEEEcCC
Q 018246 306 ----MKETQEMLDFCAKHNIAADIE---------LVRMDQINTAMERLAKSDVKYRFVIDVGN 355 (359)
Q Consensus 306 ----~~~~~~~~~~l~~g~i~~~~~---------~~~l~~~~~a~~~~~~~~~~gkvvv~~~~ 355 (359)
.++++++++++++|++++.+. .++|+++++||+.+.+++..||+|+++++
T Consensus 300 ~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~ 362 (362)
T 2c0c_A 300 LSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELPH 362 (362)
T ss_dssp GGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEECCC
T ss_pred hhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEcCC
Confidence 356899999999999987643 57999999999999988888999998764
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=364.87 Aligned_cols=313 Identities=20% Similarity=0.288 Sum_probs=260.0
Q ss_pred CcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCC
Q 018246 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
+.+||++++..++.+..+++++.+.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++ +++
T Consensus 2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~ 79 (330)
T 1tt7_A 2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDP 79 (330)
T ss_dssp CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SST
T ss_pred CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCC
Confidence 34699998877655557899999999999999999999999999999999886542 357899999999999996 468
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
+|++||||++.+.. .|...+|+|+||+++|++.++++|+++++++|+++++
T Consensus 80 ~~~vGdrV~~~~~~-----------------------------~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~ 130 (330)
T 1tt7_A 80 RFAEGDEVIATSYE-----------------------------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGT 130 (330)
T ss_dssp TCCTTCEEEEESTT-----------------------------BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHH
T ss_pred CCCCCCEEEEcccc-----------------------------cCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccc
Confidence 89999999765310 0223569999999999999999999999999999999
Q ss_pred hhhhhhhHhHhc--CCCCCCC-EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH--H
Q 018246 167 AGITVYSPMKYY--GMTEPGK-HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA--K 240 (359)
Q Consensus 167 ~~~ta~~~l~~~--~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~--~ 240 (359)
++.|||.++... ..+++|+ +|||+|+ |++|++++|+|+..|++|+++++++++++.+ +++|+++++|+++.+ .
T Consensus 131 ~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~-~~lGa~~v~~~~~~~~~~ 209 (330)
T 1tt7_A 131 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDGT 209 (330)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSSC
T ss_pred hHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCcEEEECCCchHHH
Confidence 999999887532 4568886 9999997 9999999999999999999999999999888 789999998865321 1
Q ss_pred HHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeec--CCH----HHHHHH
Q 018246 241 VKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNV--GGM----KETQEM 312 (359)
Q Consensus 241 ~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~--~~~----~~~~~~ 312 (359)
+.++. +++|++|||+|++. +..++++++++|+++.+|...+ ..+++...++.|++++.|+.. ... +.++.+
T Consensus 210 ~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 288 (330)
T 1tt7_A 210 LKALSKQQWQGAVDPVGGKQ-LASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERM 288 (330)
T ss_dssp CCSSCCCCEEEEEESCCTHH-HHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHT
T ss_pred HHHhhcCCccEEEECCcHHH-HHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHH
Confidence 12222 37999999999964 9999999999999999998654 466777788889999999743 222 235666
Q ss_pred HHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 313 LDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 313 ~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++.++++++.+ ++|||+++++||+.+.+++..||+|+++
T Consensus 289 ~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~ 330 (330)
T 1tt7_A 289 SSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL 330 (330)
T ss_dssp TTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred HHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 6777788998877 8999999999999998888889999864
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=353.76 Aligned_cols=312 Identities=13% Similarity=0.135 Sum_probs=260.7
Q ss_pred CCCCcccceeee-eec---CCC--CCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhcc----CCC-CCCCCCcccc
Q 018246 5 PETEHPQKAIGW-AAR---DNT--GTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARN----EWG-VTNYPIVPGH 72 (359)
Q Consensus 5 ~~~~~~~~~~~~-~~~---~~~--~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g----~~~-~~~~p~~~G~ 72 (359)
..++.+||++++ ..+ +.| +.+++.+++.|+| +++||||||.+++||++|++.+.+ .+. ...+|.++||
T Consensus 3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~ 82 (357)
T 2zb4_A 3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG 82 (357)
T ss_dssp ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence 345678999888 333 333 6789999999999 999999999999999999988775 232 2456889999
Q ss_pred cccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEEC
Q 018246 73 EIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152 (359)
Q Consensus 73 e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~l 152 (359)
|++|+|++ ++|++|++||||++.. |+|+||+++|++.++++
T Consensus 83 E~~G~V~~--~~v~~~~vGdrV~~~~-------------------------------------G~~aey~~v~~~~~~~i 123 (357)
T 2zb4_A 83 GGIGIIEE--SKHTNLTKGDFVTSFY-------------------------------------WPWQTKVILDGNSLEKV 123 (357)
T ss_dssp EEEEEEEE--ECSTTCCTTCEEEEEE-------------------------------------EESBSEEEEEGGGCEEC
T ss_pred cEEEEEEe--cCCCCCCCCCEEEecC-------------------------------------CCcEEEEEEchHHceec
Confidence 99999999 8899999999997542 79999999999999999
Q ss_pred CCCC-----CccccccccchhhhhhhHhHhcCCCCCC--CEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCChhhHHHH
Q 018246 153 PDNM-----PLDAGAPLLCAGITVYSPMKYYGMTEPG--KHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTSPKKESEA 223 (359)
Q Consensus 153 p~~l-----~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~ 223 (359)
|+++ +++ ++++++++.|||+++.....+++| ++|||+|+ |++|++++|+++..|+ +|+++++++++.+.+
T Consensus 124 P~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~ 202 (357)
T 2zb4_A 124 DPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILL 202 (357)
T ss_dssp CGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 9999 555 788999999999999777777999 99999997 9999999999999999 999999999998888
Q ss_pred HHHcCCcEEecCCCHH---HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC---CeeeC-------HH
Q 018246 224 ISKLGADAFLVSSDPA---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK---PLEVP-------IF 289 (359)
Q Consensus 224 ~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~~~-------~~ 289 (359)
.+++|+++++|+++.+ .+.+.+. ++|++||++|+.. +..++++++++|+++.+|.... ..+++ ..
T Consensus 203 ~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~ 281 (357)
T 2zb4_A 203 TSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGNI-SDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEA 281 (357)
T ss_dssp HHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEESCCHHH-HHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHH
T ss_pred HHHcCCceEEecCchHHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHHhccCcEEEEECCccccccCccccccchhhhhh
Confidence 4459999999876643 3444443 7999999999754 8999999999999999987542 22222 24
Q ss_pred HHHhcCcEEEEeecCC-----HHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCCc
Q 018246 290 ALVGARRLVGGSNVGG-----MKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNSK 357 (359)
Q Consensus 290 ~~~~k~~~i~g~~~~~-----~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~~ 357 (359)
.++.|++++.|+.... .++++++++++++|++++.. ..|||+++++||+.+.+++..||+|++++++.
T Consensus 282 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~~~ 355 (357)
T 2zb4_A 282 IQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEEI 355 (357)
T ss_dssp HHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEECCCCC
T ss_pred hhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCCCCceEEEEEeccc
Confidence 6778999999987644 46689999999999998876 67999999999999999887899999998764
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=346.18 Aligned_cols=290 Identities=22% Similarity=0.343 Sum_probs=247.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+..++.+. .+.+.+.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+
T Consensus 1 Mka~~~~~~g~~~--~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~---------- 68 (302)
T 1iz0_A 1 MKAWVLKRLGGPL--ELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE---------- 68 (302)
T ss_dssp CEEEEECSTTSCE--EEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET----------
T ss_pred CeEEEEcCCCCch--heEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE----------
Confidence 5777765443332 34588889999999999999999999999999987653 3578999999999998
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
||||++.+ .+|+|+||+++|++.++++|+++++++||++++++.
T Consensus 69 -GdrV~~~~-----------------------------------~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ 112 (302)
T 1iz0_A 69 -GRRYAALV-----------------------------------PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFL 112 (302)
T ss_dssp -TEEEEEEC-----------------------------------SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHH
T ss_pred -CcEEEEec-----------------------------------CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHH
Confidence 99997553 349999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC-HHHHHHhcCC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD-PAKVKAAMGT 247 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~ 247 (359)
|||+++.... +++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++ .+..+.+ ++
T Consensus 113 ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~~~~~~~~~~~-~~ 189 (302)
T 1iz0_A 113 TAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAATYAEVPERAKAW-GG 189 (302)
T ss_dssp HHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEEGGGHHHHHHHT-TS
T ss_pred HHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEECCcchhHHHHh-cC
Confidence 9999998766 799999999997 9999999999999999999999999998888 7899999998876 5555554 78
Q ss_pred ccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC-eeeCHHHHHhcCcEEEEeecC----CHHHHHHHHH---HHHhC
Q 018246 248 MDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP-LEVPIFALVGARRLVGGSNVG----GMKETQEMLD---FCAKH 319 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~----~~~~~~~~~~---~l~~g 319 (359)
+|++|| +|+. .+..++++++++|+++.+|..... ..++...++.|++++.|+... ..++++++++ ++.+|
T Consensus 190 ~d~vid-~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g 267 (302)
T 1iz0_A 190 LDLVLE-VRGK-EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGR 267 (302)
T ss_dssp EEEEEE-CSCT-THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTT
T ss_pred ceEEEE-CCHH-HHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcC
Confidence 999999 9985 499999999999999999876542 356667788899999998753 4577999999 99999
Q ss_pred CCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 320 NIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 320 ~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
++++.+ ++|||+++++||+.+.+++..||+|+++
T Consensus 268 ~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 302 (302)
T 1iz0_A 268 ELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL 302 (302)
T ss_dssp TBCCCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred CcccccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 998877 8999999999999998888789999864
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-48 Score=360.26 Aligned_cols=306 Identities=15% Similarity=0.118 Sum_probs=251.1
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC--------------------------
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-------------------------- 62 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-------------------------- 62 (359)
..|+++... ..+..+++.+++.|+|+++||||||++++||++|++++.|.++
T Consensus 6 ~~mka~v~~--~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~ 83 (379)
T 3iup_A 6 LQLRSRIKS--SGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRS 83 (379)
T ss_dssp EEEEEEECT--TSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHH
T ss_pred hhHHHHHhc--CCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccc
Confidence 346666543 2344689999999999999999999999999999999988521
Q ss_pred ---CCCCCCcccccccEEEEEeCCCC-CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCcc
Q 018246 63 ---VTNYPIVPGHEIVGTVTKVGNNV-SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGY 138 (359)
Q Consensus 63 ---~~~~p~~~G~e~~G~V~~vG~~v-~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~ 138 (359)
...+|.++|||++|+|+++|++| ++|++||||++.+ +|+|
T Consensus 84 ~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~------------------------------------~G~~ 127 (379)
T 3iup_A 84 MAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG------------------------------------GAMY 127 (379)
T ss_dssp HGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC------------------------------------SCCS
T ss_pred cccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC------------------------------------CCcc
Confidence 13468899999999999999999 8899999997542 3999
Q ss_pred ceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEE--CCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 139 SDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA--GLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 139 a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~--G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
+||+++|+++++++|+++++++|+++++.++|||+++.... ++|++|||+ |+|++|++++|+|+..|++|++++++
T Consensus 128 aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~ 205 (379)
T 3iup_A 128 SQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR--LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRK 205 (379)
T ss_dssp BSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH--HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred eeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 99999999999999999999999999999999998877665 799999999 56999999999999999999999999
Q ss_pred hhhHHHHHHHcCCcEEecCCCHHH---HHHhcC--CccEEEECCCChhhHHHHHhccc-----cC-----------CEEE
Q 018246 217 PKKESEAISKLGADAFLVSSDPAK---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLK-----VN-----------GKLV 275 (359)
Q Consensus 217 ~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~-----~~-----------G~~v 275 (359)
+++.+.+ +++|+++++|+++.+. +.++++ ++|+||||+|+...++.++++++ ++ |+++
T Consensus 206 ~~~~~~~-~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv 284 (379)
T 3iup_A 206 QEQADLL-KAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVY 284 (379)
T ss_dssp HHHHHHH-HHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEE
T ss_pred HHHHHHH-HhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEE
Confidence 9999888 8999999999877543 444443 89999999999776788888885 44 5555
Q ss_pred EecCCCCCeeeCHHHHHhcCcEEEEeecCCH------HH----HHHHHHHHHhCCCcccE-EEEccccH--HHHHHHHHc
Q 018246 276 TVGLPEKPLEVPIFALVGARRLVGGSNVGGM------KE----TQEMLDFCAKHNIAADI-ELVRMDQI--NTAMERLAK 342 (359)
Q Consensus 276 ~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~------~~----~~~~~~~l~~g~i~~~~-~~~~l~~~--~~a~~~~~~ 342 (359)
.+|... ..++++..++.+++++.|+....+ ++ ++++++++.+ ++++.+ ++|||+++ ++||+.+.+
T Consensus 285 ~~G~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~ 362 (379)
T 3iup_A 285 LYGGLD-TSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNK 362 (379)
T ss_dssp ECCCSE-EEEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTT
T ss_pred EecCCC-CCccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhc
Confidence 555433 223334455678999999776433 22 3555666666 577777 89999999 999999999
Q ss_pred CCccEEEEEEcCCCc
Q 018246 343 SDVKYRFVIDVGNSK 357 (359)
Q Consensus 343 ~~~~gkvvv~~~~~~ 357 (359)
++..||+||+++...
T Consensus 363 ~~~~gKvVv~~~~g~ 377 (379)
T 3iup_A 363 RATGEKYLINPNKGL 377 (379)
T ss_dssp CCTTCCEEEETTTTC
T ss_pred CCCCceEEEeCCCCC
Confidence 988899999998653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=329.66 Aligned_cols=304 Identities=18% Similarity=0.151 Sum_probs=252.0
Q ss_pred CCCCCcccceeeeeec--CC--CCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEE
Q 018246 4 SPETEHPQKAIGWAAR--DN--TGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVT 79 (359)
Q Consensus 4 ~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~ 79 (359)
||+.+.+||++.+..+ +. ++.+++.+.+.|+|++|||||||.+++||+.|+.. . ....+|.++|||++|+|+
T Consensus 1 ~~~~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~---~~~~~p~~~g~e~~G~Vv 76 (333)
T 1v3u_A 1 SPEFMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S---KRLKEGAVMMGQQVARVV 76 (333)
T ss_dssp ---CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T---TTCCTTSBCCCCEEEEEE
T ss_pred CCcccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c---CcCCCCcccccceEEEEE
Confidence 5667778999988764 22 35688899999999999999999999999998732 2 123467889999999999
Q ss_pred EeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCC----
Q 018246 80 KVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN---- 155 (359)
Q Consensus 80 ~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~---- 155 (359)
+. ++++|++||||++. |+|+||+++|++.++++|++
T Consensus 77 ~~--~v~~~~vGdrV~~~--------------------------------------g~~aey~~v~~~~~~~iP~~~~~~ 116 (333)
T 1v3u_A 77 ES--KNSAFPAGSIVLAQ--------------------------------------SGWTTHFISDGKGLEKLLTEWPDK 116 (333)
T ss_dssp EE--SCTTSCTTCEEEEC--------------------------------------CCSBSEEEESSTTEEECC--CCTT
T ss_pred ec--CCCCCCCCCEEEec--------------------------------------CceEEEEEechHHeEEcCcccccC
Confidence 95 67889999999732 78999999999999999997
Q ss_pred CCccc-cccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe
Q 018246 156 MPLDA-GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL 233 (359)
Q Consensus 156 l~~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~ 233 (359)
+++++ ++++++++.|||+++.....+++|++|||+|+ |++|++++++++..|++|+++++++++.+.+ +++|++.++
T Consensus 117 ~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~ 195 (333)
T 1v3u_A 117 LPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAF 195 (333)
T ss_dssp SCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEE
T ss_pred CCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCcEEE
Confidence 88888 58999999999999987777799999999997 9999999999999999999999999999888 899999988
Q ss_pred cCCC-H---HHHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC------Ce-eeCHHHHHhcCcEEEEe
Q 018246 234 VSSD-P---AKVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK------PL-EVPIFALVGARRLVGGS 301 (359)
Q Consensus 234 ~~~~-~---~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~-~~~~~~~~~k~~~i~g~ 301 (359)
|.++ . +.+.+.. +++|++||++|... +..++++++++|+++.+|.... .. ..+...++.|++++.|+
T Consensus 196 d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~ 274 (333)
T 1v3u_A 196 NYKTVNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGF 274 (333)
T ss_dssp ETTSCSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEEC
T ss_pred ecCCHHHHHHHHHHHhCCCCeEEEECCChHH-HHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEE
Confidence 8765 3 2334443 37999999999865 8999999999999999997643 11 23667788999999998
Q ss_pred ecCC------HHHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEc
Q 018246 302 NVGG------MKETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDV 353 (359)
Q Consensus 302 ~~~~------~~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 353 (359)
..+. .++++++++++++|++++.. ..++|+++++||+.+.+++..||+|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 333 (333)
T 1v3u_A 275 IVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVVTA 333 (333)
T ss_dssp CGGGCCTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred ehhhcchHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence 7643 34678899999999998876 6789999999999999988889999974
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=335.46 Aligned_cols=308 Identities=16% Similarity=0.154 Sum_probs=253.7
Q ss_pred Ccccceeeeeec--CCCC--Cccce--eeecCC-CCCCeEEEEEeeeecchhhhhhhccCCCC----CCCCCcccccccE
Q 018246 8 EHPQKAIGWAAR--DNTG--TFSPF--HFSRRE-TGADDVTIKILFCGICHSDLHCARNEWGV----TNYPIVPGHEIVG 76 (359)
Q Consensus 8 ~~~~~~~~~~~~--~~~~--~~~~~--~~~~~~-~~~~eVlV~v~~~~i~~~D~~~~~g~~~~----~~~p~~~G~e~~G 76 (359)
+.+||++.+..+ +.++ .++++ +++.|. |+++||||||.++++|+.|+ ...|.+.. ..+|.++|||++|
T Consensus 2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G 80 (345)
T 2j3h_A 2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG 80 (345)
T ss_dssp EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence 345777766654 4566 68887 788886 89999999999999988875 44454322 2468899999999
Q ss_pred EEEE--eCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc--eEEC
Q 018246 77 TVTK--VGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY--VLRF 152 (359)
Q Consensus 77 ~V~~--vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~--~~~l 152 (359)
++++ +|+++++|++||||++. |+|+||++++++. ++++
T Consensus 81 ~~~~GvV~~~v~~~~vGdrV~~~--------------------------------------g~~aey~~v~~~~~~~~~i 122 (345)
T 2j3h_A 81 YGVSRIIESGHPDYKKGDLLWGI--------------------------------------VAWEEYSVITPMTHAHFKI 122 (345)
T ss_dssp EEEEEEEEECSTTCCTTCEEEEE--------------------------------------EESBSEEEECCCTTTCEEE
T ss_pred ceEEEEEecCCCCCCCCCEEEee--------------------------------------cCceeEEEecccccceeec
Confidence 9999 99999999999999632 7899999999876 9999
Q ss_pred CC---CCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC
Q 018246 153 PD---NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG 228 (359)
Q Consensus 153 p~---~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g 228 (359)
|+ +++++ ++++++++.|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++++++.+.+++|
T Consensus 123 p~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g 201 (345)
T 2j3h_A 123 QHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG 201 (345)
T ss_dssp CCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSC
T ss_pred CCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC
Confidence 96 35555 67899999999999987777799999999997 999999999999999999999999999988844799
Q ss_pred CcEEecCCCH----HHHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC------CeeeCHHHHHhcCcE
Q 018246 229 ADAFLVSSDP----AKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK------PLEVPIFALVGARRL 297 (359)
Q Consensus 229 ~~~v~~~~~~----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~k~~~ 297 (359)
+++++|+++. +.+.+.++ ++|++||++|+. .+..++++++++|+++.+|.... ...++...++.++++
T Consensus 202 ~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (345)
T 2j3h_A 202 FDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNR 280 (345)
T ss_dssp CSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCE
T ss_pred CceEEecCCHHHHHHHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhcee
Confidence 9999887542 33444443 799999999985 48999999999999999987542 235566678889999
Q ss_pred EEEeecCCH-----HHHHHHHHHHHhCCCcccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 298 VGGSNVGGM-----KETQEMLDFCAKHNIAADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 298 i~g~~~~~~-----~~~~~~~~~l~~g~i~~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+.|+..+.+ +.++++++++++|++++.+ .+|+|+++++||+.+.+++..||+|+.++++
T Consensus 281 i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~~ 345 (345)
T 2j3h_A 281 IQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345 (345)
T ss_dssp EEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTCCSSEEEEESSCC
T ss_pred eceeeehhhhhhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHcCCCceEEEEEeCCC
Confidence 999766542 2388999999999999877 5899999999999999988889999998753
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=367.31 Aligned_cols=296 Identities=17% Similarity=0.202 Sum_probs=249.9
Q ss_pred eecCCCCCccceeeec--CCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEE
Q 018246 17 AARDNTGTFSPFHFSR--RETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKV 94 (359)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV 94 (359)
..++.++.+++.+.+. |+|++|||+|||.++|||++|++++.|.++ .|.++|||++|+|+++|++|++|++||||
T Consensus 216 ~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~vGDrV 292 (795)
T 3slk_A 216 TRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLAPGDRV 292 (795)
T ss_dssp SSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSCTTCEE
T ss_pred CCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCCCCCEE
Confidence 3344556677776654 678999999999999999999999998764 35579999999999999999999999999
Q ss_pred EEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhH
Q 018246 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSP 174 (359)
Q Consensus 95 ~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~ 174 (359)
+.. .+|+|++|+++|++.++++|+++++++||+++++++|||++
T Consensus 293 ~~~------------------------------------~~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~a 336 (795)
T 3slk_A 293 MGM------------------------------------IPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYA 336 (795)
T ss_dssp EEC------------------------------------CSSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCC
T ss_pred EEE------------------------------------ecCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHH
Confidence 743 23899999999999999999999999999999999999999
Q ss_pred hHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH---HHHhcC--Cc
Q 018246 175 MKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK---VKAAMG--TM 248 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~--~~ 248 (359)
+.+...+++|++|||+|+ |++|++++|+||+.|++|+++++++ +.+.+ + +|+++++++++.+. +.+.++ ++
T Consensus 337 l~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~~l-~-lga~~v~~~~~~~~~~~i~~~t~g~Gv 413 (795)
T 3slk_A 337 LVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQAV-E-LSREHLASSRTCDFEQQFLGATGGRGV 413 (795)
T ss_dssp CCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGGGS-C-SCGGGEECSSSSTHHHHHHHHSCSSCC
T ss_pred HHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhhhh-h-cChhheeecCChhHHHHHHHHcCCCCe
Confidence 998888899999999996 9999999999999999999999766 54444 3 99999999877543 445554 89
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC------HHHHHHHHHHHHhCCCc
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG------MKETQEMLDFCAKHNIA 322 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~------~~~~~~~~~~l~~g~i~ 322 (359)
|+|||+++++. ++.++++|+++|+++.+|........... ...+++++.+..... .+.++++++++++|+++
T Consensus 414 DvVld~~gg~~-~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~ 491 (795)
T 3slk_A 414 DVVLNSLAGEF-ADASLRMLPRGGRFLELGKTDVRDPVEVA-DAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLE 491 (795)
T ss_dssp SEEEECCCTTT-THHHHTSCTTCEEEEECCSTTCCCHHHHH-HHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCC
T ss_pred EEEEECCCcHH-HHHHHHHhcCCCEEEEeccccccCccccc-ccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcC
Confidence 99999999866 89999999999999999876533222222 234778887765432 24588999999999998
Q ss_pred ccE-EEEccccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 323 ADI-ELVRMDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 323 ~~~-~~~~l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
+.+ ++||++++++||+.+.+++..||+||++++.
T Consensus 492 p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~~~ 526 (795)
T 3slk_A 492 PLPVTAWDVRQAPEALRHLSQARHVGKLVLTMPPV 526 (795)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHTCCCBEEEEECCCC
T ss_pred CCcceeEcHHHHHHHHHHHhcCCccceEEEecCcc
Confidence 865 8999999999999999999999999998764
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=310.92 Aligned_cols=274 Identities=18% Similarity=0.219 Sum_probs=226.3
Q ss_pred CCeEEEEEeeeecchhhhhhhccCCCCC-------CCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccc
Q 018246 37 ADDVTIKILFCGICHSDLHCARNEWGVT-------NYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESC 109 (359)
Q Consensus 37 ~~eVlV~v~~~~i~~~D~~~~~g~~~~~-------~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~ 109 (359)
++||+|+|.++|+|++|+++..|.++.. ..|.++|+|++|+|. +||||+...
T Consensus 1559 ~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV~g~~----------- 1617 (2512)
T 2vz8_A 1559 CQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRVMGMV----------- 1617 (2512)
T ss_dssp HHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCEEEEC-----------
T ss_pred CCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEEEEee-----------
Confidence 7999999999999999999999876422 235689999999873 799997442
Q ss_pred cCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEE
Q 018246 110 QQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV 189 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI 189 (359)
..|+|++|+++|++.++++|+++++++||++++++.|||+++...+.+++|++|||
T Consensus 1618 ------------------------~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI 1673 (2512)
T 2vz8_A 1618 ------------------------PAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLI 1673 (2512)
T ss_dssp ------------------------SSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred ------------------------cCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 34899999999999999999999999999999999999999988888899999999
Q ss_pred ECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcEEecCCCHHH---HHHhcC--CccEEEECCCChhh
Q 018246 190 AGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADAFLVSSDPAK---VKAAMG--TMDYIIDTVSAVHS 260 (359)
Q Consensus 190 ~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~v~~~~~~~~---~~~~~~--~~d~vid~~g~~~~ 260 (359)
+|+ |++|++++|+|+..|++|+++++++++.+.+.+. +|+++++++++.+. +.+.++ ++|+|||++++..
T Consensus 1674 ~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~~- 1752 (2512)
T 2vz8_A 1674 HSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEK- 1752 (2512)
T ss_dssp TTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHHH-
T ss_pred EeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCchH-
Confidence 975 9999999999999999999999999998888443 67899999877544 334443 7999999998655
Q ss_pred HHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC-----HHHHHHHHHHH----HhCCCcccE-EEEc
Q 018246 261 LAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG-----MKETQEMLDFC----AKHNIAADI-ELVR 329 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~-----~~~~~~~~~~l----~~g~i~~~~-~~~~ 329 (359)
+..++++++++|+++.+|.... ........++.+++++.++.... ..++.++++++ .++++++.+ ++||
T Consensus 1753 l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~ 1832 (2512)
T 2vz8_A 1753 LQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFP 1832 (2512)
T ss_dssp HHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEE
T ss_pred HHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEec
Confidence 9999999999999999986431 11111234567899999876532 24556666555 467787765 8999
Q ss_pred cccHHHHHHHHHcCCccEEEEEEcCCC
Q 018246 330 MDQINTAMERLAKSDVKYRFVIDVGNS 356 (359)
Q Consensus 330 l~~~~~a~~~~~~~~~~gkvvv~~~~~ 356 (359)
++++++||+.+.+++..||+|+.++.+
T Consensus 1833 l~ei~eA~~~l~~g~~~GKvVi~~~~~ 1859 (2512)
T 2vz8_A 1833 RTKVEAAFRYMAQGKHIGKVVIQVREE 1859 (2512)
T ss_dssp SSTHHHHHHHHHTTCCSSEEEEECSCC
T ss_pred HHHHHHHHHhhhccCccceEEEECCCc
Confidence 999999999999998889999999754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=168.59 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=132.6
Q ss_pred CceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH
Q 018246 147 HYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS 225 (359)
Q Consensus 147 ~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~ 225 (359)
+.++++|+++++++|+++++++.|||+++.....+++|++|||+|+ |++|++++++++..|++|+++++++++.+.+ +
T Consensus 2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~ 80 (198)
T 1pqw_A 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-S 80 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-H
T ss_pred CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-H
Confidence 4688999999999999999999999999988777799999999985 9999999999999999999999999888777 7
Q ss_pred HcCCcEEecCCCHHH---HHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEE
Q 018246 226 KLGADAFLVSSDPAK---VKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLV 298 (359)
Q Consensus 226 ~~g~~~v~~~~~~~~---~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i 298 (359)
++|++.+++.++.+. +.+.. .++|+++|++|... +..++++|+++|+++.+|.... ..+++.. .+.+++++
T Consensus 81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~ 158 (198)
T 1pqw_A 81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKSASF 158 (198)
T ss_dssp TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTTCEE
T ss_pred HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCCcEE
Confidence 899988888765433 33333 27999999998755 8999999999999999987542 2234332 35688888
Q ss_pred EEeec------CC---HHHHHHHHHHHHhCCCcccE
Q 018246 299 GGSNV------GG---MKETQEMLDFCAKHNIAADI 325 (359)
Q Consensus 299 ~g~~~------~~---~~~~~~~~~~l~~g~i~~~~ 325 (359)
.++.. .. .+.++++++++++|++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~ 194 (198)
T 1pqw_A 159 SVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP 194 (198)
T ss_dssp EECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred EEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence 86432 11 35688999999999998754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=105.00 Aligned_cols=167 Identities=13% Similarity=0.043 Sum_probs=108.1
Q ss_pred CCCCCEEEEecc------ccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcc--
Q 018246 88 FKEGDKVGVGVL------VASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLD-- 159 (359)
Q Consensus 88 ~~vGdrV~v~~~------~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~-- 159 (359)
+++||||++.+. .-.|+.|.+|+.|..+.|......+ |+.. ....++.|+...+.
T Consensus 4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~~-----------G~~~------~~~~~~~p~~~~~~~~ 66 (248)
T 2yvl_A 4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPE-----------GVKI------NGFEVYRPTLEEIILL 66 (248)
T ss_dssp CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCCT-----------TEEE------TTEEEECCCHHHHHHH
T ss_pred CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCCC-----------CCEE------EEEEEeCCCHHHHHHh
Confidence 899999998872 3378889999999888887542221 2221 23334444322111
Q ss_pred ---ccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC-c--
Q 018246 160 ---AGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA-D-- 230 (359)
Q Consensus 160 ---~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~-~-- 230 (359)
..+.+.... .+...+.... +.++++||.+|+| .|..+..+++. +.+|++++.+++..+.+.+. .+. .
T Consensus 67 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~vldiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 142 (248)
T 2yvl_A 67 GFERKTQIIYPK-DSFYIALKLN-LNKEKRVLEFGTG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNV 142 (248)
T ss_dssp TSCCSSCCCCHH-HHHHHHHHTT-CCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTE
T ss_pred cCcCCCCcccch-hHHHHHHhcC-CCCCCEEEEeCCC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcE
Confidence 111111122 2223344443 4899999999998 69999999998 88999999999988777433 232 1
Q ss_pred EEecCCCHHHHHHh--cCCccEEEECCCCh-hhHHHHHhccccCCEEEEec
Q 018246 231 AFLVSSDPAKVKAA--MGTMDYIIDTVSAV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 231 ~v~~~~~~~~~~~~--~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
.++..+-.+ .. ..++|+|+...+.. ..+..+.+.|+++|+++...
T Consensus 143 ~~~~~d~~~---~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 143 KFFNVDFKD---AEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEECSCTTT---SCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred EEEEcChhh---cccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 222111111 11 13799999988766 57899999999999998864
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-12 Score=122.33 Aligned_cols=180 Identities=12% Similarity=0.141 Sum_probs=128.9
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc
Q 018246 69 VPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 69 ~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~ 148 (359)
..|++.++.|.++|++++++.+|+++++.... . + +. .....|++++|+..+...
T Consensus 76 ~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk-~---------~---------~~-------~~~~~G~~~~~~~~~~~~ 129 (404)
T 1gpj_A 76 KRGSEAVRHLFRVASGLESMMVGEQEILRQVK-K---------A---------YD-------RAARLGTLDEALKIVFRR 129 (404)
T ss_dssp EEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHH-H---------H---------HH-------HHHHHTCCCHHHHHHHHH
T ss_pred ecCchHhhhheeeccCCCCCcCCcchhHHHHH-H---------H---------HH-------HHHHcCCchHHHHHHHHH
Confidence 47999999999999999999999987321100 0 0 00 001237788888888888
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcC----CCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHH
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYG----MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEA 223 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~----~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~ 223 (359)
++++|+.++.+.++. ..+..++|.++.... . .+|++|+|+|+|.+|.++++.++..|+ +|+++++++++.+.+
T Consensus 130 a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~-l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~l 207 (404)
T 1gpj_A 130 AINLGKRAREETRIS-EGAVSIGSAAVELAERELGS-LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVEL 207 (404)
T ss_dssp HHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSC-CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred HhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhcc-ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 888898887777654 345567777665432 2 579999999999999999999999999 999999999987555
Q ss_pred HHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH--HHHHhc--c--ccCCEEEEecCC
Q 018246 224 ISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL--APLLGL--L--KVNGKLVTVGLP 280 (359)
Q Consensus 224 ~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~--~~~~~~--l--~~~G~~v~~g~~ 280 (359)
.+++|++ +++.. .+.+...++|+|++|++....+ ...+.. + ++++.++.++..
T Consensus 208 a~~~g~~-~~~~~---~l~~~l~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia 266 (404)
T 1gpj_A 208 ARDLGGE-AVRFD---ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA 266 (404)
T ss_dssp HHHHTCE-ECCGG---GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred HHHcCCc-eecHH---hHHHHhcCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence 5888876 34332 2334445899999999865432 134554 4 556777766653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-10 Score=101.54 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
++++|+|+|+|.+|+.+++.++..|++|+++++++++.+.+.+.+|.....+..+.+.+.+...++|++++|++...
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~ 244 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA 244 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence 46899999999999999999999999999999999998888555787644444445555555568999999998653
Q ss_pred ---hHHHHHhccccCCEEEEecCCCCC-------eeeCHHHHHhcCcEEEEeec------------CCHHHHHHHHHHHH
Q 018246 260 ---SLAPLLGLLKVNGKLVTVGLPEKP-------LEVPIFALVGARRLVGGSNV------------GGMKETQEMLDFCA 317 (359)
Q Consensus 260 ---~~~~~~~~l~~~G~~v~~g~~~~~-------~~~~~~~~~~k~~~i~g~~~------------~~~~~~~~~~~~l~ 317 (359)
.....++.|+++|.+++++...+. .+++...+..+++++.+... ++...+..+++++.
T Consensus 245 ~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~ 324 (369)
T 2eez_A 245 PKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAE 324 (369)
T ss_dssp -CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHh
Confidence 246788999999999999876531 22333334457777766432 12234677778887
Q ss_pred hCC
Q 018246 318 KHN 320 (359)
Q Consensus 318 ~g~ 320 (359)
+|.
T Consensus 325 ~g~ 327 (369)
T 2eez_A 325 KGL 327 (369)
T ss_dssp HTT
T ss_pred cCh
Confidence 774
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7.9e-10 Score=101.80 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=97.6
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE--EecCCCHHHHHHhcCCccEEEECCCChhh-
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA--FLVSSDPAKVKAAMGTMDYIIDTVSAVHS- 260 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~vid~~g~~~~- 260 (359)
+++|+|+|+|++|+++++.++.+|++|+++++++++.+.+ ++++... +++.+ .+.+.+...++|+||+|++.+..
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~DvVI~~~~~~~~~ 244 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYL-ETLFGSRVELLYSN-SAEIETAVAEADLLIGAVLVPGRR 244 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHHGGGSEEEECC-HHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-HHhhCceeEeeeCC-HHHHHHHHcCCCEEEECCCcCCCC
Confidence 4899999999999999999999999999999999999888 5554332 34333 23333444589999999986542
Q ss_pred -----HHHHHhccccCCEEEEecCCCC-------CeeeCHHHHHhcCcEEEEeec------------CCHHHHHHHHHHH
Q 018246 261 -----LAPLLGLLKVNGKLVTVGLPEK-------PLEVPIFALVGARRLVGGSNV------------GGMKETQEMLDFC 316 (359)
Q Consensus 261 -----~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~k~~~i~g~~~------------~~~~~~~~~~~~l 316 (359)
....++.|+++|.+++++...+ ..+++...+..+++++.+... .....+..+++++
T Consensus 245 ~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~l~~l~ 324 (361)
T 1pjc_A 245 APILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLA 324 (361)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999987543 223444445567888877432 1123356777888
Q ss_pred HhCC
Q 018246 317 AKHN 320 (359)
Q Consensus 317 ~~g~ 320 (359)
.+|.
T Consensus 325 ~~G~ 328 (361)
T 1pjc_A 325 NQGL 328 (361)
T ss_dssp HHGG
T ss_pred hCCc
Confidence 7773
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.2e-10 Score=102.97 Aligned_cols=157 Identities=14% Similarity=0.144 Sum_probs=110.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCC----------------------HH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSD----------------------PA 239 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~----------------------~~ 239 (359)
++++|+|+|+|.+|++++++++.+|++|+++++++++.+.+ +++|++.+ ++..+ ..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~-~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 249 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 249 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence 68999999999999999999999999999999999998888 67998755 22211 11
Q ss_pred HHHHhcCCccEEEECC---CCh--hh-HHHHHhccccCCEEEEecCCC-CCe--eeCHHHHHhcCcEEEEeecCCHHHHH
Q 018246 240 KVKAAMGTMDYIIDTV---SAV--HS-LAPLLGLLKVNGKLVTVGLPE-KPL--EVPIFALVGARRLVGGSNVGGMKETQ 310 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~---g~~--~~-~~~~~~~l~~~G~~v~~g~~~-~~~--~~~~~~~~~k~~~i~g~~~~~~~~~~ 310 (359)
.+.+...++|+|++++ |.+ .. ....++.|++++.+++++... +.. ..+...+..+++++.+..........
T Consensus 250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~~~~~ 329 (384)
T 1l7d_A 250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAA 329 (384)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGGGGHH
T ss_pred HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcchhHH
Confidence 2455567899999999 532 22 367899999999999998643 222 22333455688999987664333356
Q ss_pred HHHHHHHhCCCcc---cEE----EEccccHHHHHHHH
Q 018246 311 EMLDFCAKHNIAA---DIE----LVRMDQINTAMERL 340 (359)
Q Consensus 311 ~~~~~l~~g~i~~---~~~----~~~l~~~~~a~~~~ 340 (359)
++.+++.++.+.. ... .+.++.-++.++..
T Consensus 330 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 366 (384)
T 1l7d_A 330 DASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGT 366 (384)
T ss_dssp HHHHHHHHHHHHHHGGGEETTTTEECCCTTCHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhCCcchhhccccCHHHhcC
Confidence 6888888886632 221 45555556666544
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-10 Score=102.88 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=97.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS-- 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~-- 260 (359)
++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.+|.....+......+.+...++|+|++|++.+.+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t 246 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKA 246 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 689999999999999999999999999999999999988884457865323333334455555689999999976543
Q ss_pred ----HHHHHhccccCCEEEEecCCCC-------CeeeCHHHHHhcCcEEEEeecCC------------HHHHHHHHHHHH
Q 018246 261 ----LAPLLGLLKVNGKLVTVGLPEK-------PLEVPIFALVGARRLVGGSNVGG------------MKETQEMLDFCA 317 (359)
Q Consensus 261 ----~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~k~~~i~g~~~~~------------~~~~~~~~~~l~ 317 (359)
....++.|+++|.+++++...+ +.+++...+..+++.+.+..... ...+..+++++.
T Consensus 247 ~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~ 326 (377)
T 2vhw_A 247 PKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELAD 326 (377)
T ss_dssp CCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999985432 22333333345677766533311 122466667776
Q ss_pred hC
Q 018246 318 KH 319 (359)
Q Consensus 318 ~g 319 (359)
+|
T Consensus 327 ~g 328 (377)
T 2vhw_A 327 HG 328 (377)
T ss_dssp HH
T ss_pred CC
Confidence 66
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=95.54 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=95.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCC-------------CHH-------HH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSS-------------DPA-------KV 241 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~-------------~~~-------~~ 241 (359)
++++|+|+|+|.+|+.++++|+.+|++|+++++++++++.+ +++|++.+. +.. ..+ .+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 249 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF 249 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence 58899999999999999999999999999999999998888 788987542 211 111 23
Q ss_pred HHhcCCccEEEECCCCh-----hhH-HHHHhccccCCEEEEecCCC-CCeeeCH--H-HHHhcCcEEEEeecCCHHHH-H
Q 018246 242 KAAMGTMDYIIDTVSAV-----HSL-APLLGLLKVNGKLVTVGLPE-KPLEVPI--F-ALVGARRLVGGSNVGGMKET-Q 310 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~-----~~~-~~~~~~l~~~G~~v~~g~~~-~~~~~~~--~-~~~~k~~~i~g~~~~~~~~~-~ 310 (359)
.+...++|+|+++++.+ ..+ ...++.|++++.+++++... +...... . .+..+++++.|.... ...+ .
T Consensus 250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~-p~~~~~ 328 (401)
T 1x13_A 250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDL-PGRLPT 328 (401)
T ss_dssp HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCT-GGGSHH
T ss_pred HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCC-cccCHH
Confidence 44445899999995321 223 67899999999999998643 3333221 1 145688999987653 2223 2
Q ss_pred HHHHHHHhCCC
Q 018246 311 EMLDFCAKHNI 321 (359)
Q Consensus 311 ~~~~~l~~g~i 321 (359)
.+.+++.++.+
T Consensus 329 ~a~~ll~~~~~ 339 (401)
T 1x13_A 329 QSSQLYGTNLV 339 (401)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhHH
Confidence 35555555544
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-08 Score=92.57 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=117.9
Q ss_pred hhhhhhhHhHhcC-CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc
Q 018246 167 AGITVYSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM 245 (359)
Q Consensus 167 ~~~ta~~~l~~~~-~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~ 245 (359)
...++|+++.... ...+|++|+|+|.|.+|+.+++.++.+|++|+++++++++.+.+ +++|++ +++ +.++.
T Consensus 256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-~~~Ga~-~~~------l~e~l 327 (494)
T 3ce6_A 256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-MMEGFD-VVT------VEEAI 327 (494)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-ECC------HHHHG
T ss_pred hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCE-Eec------HHHHH
Confidence 3455666665443 35799999999999999999999999999999999999988777 688886 322 12334
Q ss_pred CCccEEEECCCChhhHH-HHHhccccCCEEEEecCCCCCeeeCHHHHHhcCc---EEEEeec-CCHHHHHHHHHHHHhCC
Q 018246 246 GTMDYIIDTVSAVHSLA-PLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARR---LVGGSNV-GGMKETQEMLDFCAKHN 320 (359)
Q Consensus 246 ~~~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~---~i~g~~~-~~~~~~~~~~~~l~~g~ 320 (359)
.+.|+|+++++....+. ..++.|+++|+++.+|... ..++...+..+.+ ++.+... .....+...+.++.+++
T Consensus 328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~--~eId~~aL~~~aL~~~~I~~~ldv~~~~~~~~~l~LL~~gr 405 (494)
T 3ce6_A 328 GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD--NEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIVLSEGR 405 (494)
T ss_dssp GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG--GGBCHHHHHHTTCEEEEEETTEEEEECTTTCCEEEEEGGGS
T ss_pred hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC--CccCHHHHHHhhhccceEEEEEEEeecCCcchHHHHHhCCC
Confidence 68999999999877565 7899999999999998754 2466666655444 4443211 11111122333445555
Q ss_pred Cc------ccE-----EEEccccHHHHHHHHHcCCccEEEE
Q 018246 321 IA------ADI-----ELVRMDQINTAMERLAKSDVKYRFV 350 (359)
Q Consensus 321 i~------~~~-----~~~~l~~~~~a~~~~~~~~~~gkvv 350 (359)
+. |.+ +.+ ++++.++++.+.+++..++.|
T Consensus 406 lvnL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~~~~~~V 445 (494)
T 3ce6_A 406 LLNLGNATGHPSFVMSNSF-ANQTIAQIELWTKNDEYDNEV 445 (494)
T ss_dssp CHHHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGGGCCSSE
T ss_pred EEeccCCCCCccccchHHH-HHHHHHHHHHHHcCCCCCCEE
Confidence 53 221 123 568888888888765544444
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-08 Score=78.32 Aligned_cols=107 Identities=16% Similarity=0.074 Sum_probs=80.0
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCc
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 248 (359)
..++.++..... ..+++|+|+|+|.+|.+.++.++..|++|++.++++++.+.+.++++.... ...+. .+...++
T Consensus 7 sv~~~a~~~~~~-~~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~-~~~~~---~~~~~~~ 81 (144)
T 3oj0_A 7 SIPSIVYDIVRK-NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV-LINDI---DSLIKNN 81 (144)
T ss_dssp SHHHHHHHHHHH-HCCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEE-ECSCH---HHHHHTC
T ss_pred cHHHHHHHHHHh-ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceE-eecCH---HHHhcCC
Confidence 344666665554 458999999999999999999988999999999999998887688885432 23332 2333579
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
|+|+.+++....+- ....+++++.++.++.+.
T Consensus 82 Divi~at~~~~~~~-~~~~l~~g~~vid~~~p~ 113 (144)
T 3oj0_A 82 DVIITATSSKTPIV-EERSLMPGKLFIDLGNPP 113 (144)
T ss_dssp SEEEECSCCSSCSB-CGGGCCTTCEEEECCSSC
T ss_pred CEEEEeCCCCCcEe-eHHHcCCCCEEEEccCCc
Confidence 99999999765221 236788999999997754
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=85.35 Aligned_cols=120 Identities=19% Similarity=0.207 Sum_probs=86.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec-------------CCC----------HH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV-------------SSD----------PA 239 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~-------------~~~----------~~ 239 (359)
++.+|+|+|+|.+|+.++++++.+|++|++.++++++++.+ +++|++.+.. +.. ..
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~ 267 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV-ASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA 267 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH-HHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence 67899999999999999999999999999999999999888 6788763321 110 12
Q ss_pred HHHHhcCCccEEEECCCCh-----h-hHHHHHhccccCCEEEEecCCC-CCeee--CHHHHHhcCcEEEEeec
Q 018246 240 KVKAAMGTMDYIIDTVSAV-----H-SLAPLLGLLKVNGKLVTVGLPE-KPLEV--PIFALVGARRLVGGSNV 303 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~-----~-~~~~~~~~l~~~G~~v~~g~~~-~~~~~--~~~~~~~k~~~i~g~~~ 303 (359)
.+.+...+.|+||.++..+ . .-+..++.|++++.+|+++... +.... +...+..+++++.+...
T Consensus 268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~n 340 (405)
T 4dio_A 268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHLN 340 (405)
T ss_dssp HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECSS
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeCC
Confidence 3444456899999996422 1 3478999999999999997533 22221 11123346788887665
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-07 Score=84.73 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=86.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec---------CC----------CHHHHHH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV---------SS----------DPAKVKA 243 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~---------~~----------~~~~~~~ 243 (359)
++.+|+|+|+|.+|+.+++.++.+|++|++.++++++++.+ +++|++.+.. +. ....+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e 261 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV-RSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED 261 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH-HHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence 67899999999999999999999999999999999999998 7788764320 00 0123445
Q ss_pred hcCCccEEEECCCCh-----h-hHHHHHhccccCCEEEEecCCCC-Cee--eCHHHHHhcCcEEEEeec
Q 018246 244 AMGTMDYIIDTVSAV-----H-SLAPLLGLLKVNGKLVTVGLPEK-PLE--VPIFALVGARRLVGGSNV 303 (359)
Q Consensus 244 ~~~~~d~vid~~g~~-----~-~~~~~~~~l~~~G~~v~~g~~~~-~~~--~~~~~~~~k~~~i~g~~~ 303 (359)
...+.|+||.++..+ . ..+..++.|++++.+++++...+ ... .+...+..+++++.+...
T Consensus 262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~n 330 (381)
T 3p2y_A 262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPLN 330 (381)
T ss_dssp HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCSC
T ss_pred HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeCC
Confidence 557999999986322 1 34789999999999999976443 221 111123345677776444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-06 Score=63.78 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
.+.+|+|+|+|.+|..+++.+...| .+|+++++++++.+.+ ...+... ..+..+.+.+.+...++|+||++++....
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL-NRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH-HTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH-HhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence 4568999999999999999999999 6999999999988877 4566543 34556666677777799999999987653
Q ss_pred HHHHHhccccCCEEEEe
Q 018246 261 LAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~ 277 (359)
......+.+.+-+++.+
T Consensus 83 ~~~~~~~~~~g~~~~~~ 99 (118)
T 3ic5_A 83 PIIAKAAKAAGAHYFDL 99 (118)
T ss_dssp HHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 44444445555555554
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=71.34 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-+|++|+|+|.|.+|+.+++.++..|++|++.++++++.+.+ +++|+..+ +. +.+.++....|+|+.+++....-
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~-~~---~~l~~~l~~aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI-AEMGMEPF-HI---SKAAQELRDVDVCINTIPALVVT 227 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTSEEE-EG---GGHHHHTTTCSEEEECCSSCCBC
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHCCCeec-Ch---hhHHHHhcCCCEEEECCChHHhC
Confidence 478999999999999999999999999999999998887666 57786543 22 23455567899999999865433
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEE
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVG 299 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~ 299 (359)
...+..|++++.++.++.......+ .....+++.+.
T Consensus 228 ~~~l~~mk~~~~lin~ar~~~~~~~--~~a~~~Gv~~~ 263 (293)
T 3d4o_A 228 ANVLAEMPSHTFVIDLASKPGGTDF--RYAEKRGIKAL 263 (293)
T ss_dssp HHHHHHSCTTCEEEECSSTTCSBCH--HHHHHHTCEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCCCH--HHHHHCCCEEE
Confidence 5678899999999999864433333 33334555554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-06 Score=67.93 Aligned_cols=96 Identities=11% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH-HcCCcEEe-cCCCHHHHHHh-cCCccEEEECCCC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS-KLGADAFL-VSSDPAKVKAA-MGTMDYIIDTVSA 257 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~-~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~ 257 (359)
..++.+|+|+|+|.+|+.+++.++..|.+|+++++++++.+.+ + +.|...+. +..+.+.+.+. ..++|+|+.+++.
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~-~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRL-NSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND 94 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGS-CTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH-HhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence 3578899999999999999999999999999999999988766 4 56665443 33344444443 3479999999998
Q ss_pred hhhHHHHHhcccc-C--CEEEEe
Q 018246 258 VHSLAPLLGLLKV-N--GKLVTV 277 (359)
Q Consensus 258 ~~~~~~~~~~l~~-~--G~~v~~ 277 (359)
......+...++. + .+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 95 DSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred cHHHHHHHHHHHHHCCCCeEEEE
Confidence 7644444444443 3 344443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.5e-06 Score=76.03 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=81.2
Q ss_pred hhHhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+.++.+. +..-.|++|+|+|.|.+|+.+++.++.+|++|+++++++.+...+ ...|... . .+.++....|+
T Consensus 207 ~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-~~~G~~v-~------~Leeal~~ADI 278 (435)
T 3gvp_A 207 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-CMDGFRL-V------KLNEVIRQVDI 278 (435)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEE-C------CHHHHTTTCSE
T ss_pred HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-HHcCCEe-c------cHHHHHhcCCE
Confidence 4455443 344689999999999999999999999999999999998776666 4566532 1 14556678999
Q ss_pred EEECCCChhhHH-HHHhccccCCEEEEecCCCC
Q 018246 251 IIDTVSAVHSLA-PLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 251 vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~ 282 (359)
++.|.+....++ ..++.|++++.++.+|....
T Consensus 279 Vi~atgt~~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 279 VITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp EEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred EEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence 999988776564 88999999999999986643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.6e-06 Score=71.47 Aligned_cols=99 Identities=22% Similarity=0.250 Sum_probs=77.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.+++|.+. ..|-.+.+.++++ .++.|+.
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 107 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL 107 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6899999986 899999999999999999999999999998888888532 2355555444433 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++++|.. ...+.++..|+.+|++|.++...
T Consensus 108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~ 162 (273)
T 4fgs_A 108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTA 162 (273)
T ss_dssp EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehh
Confidence 9999852 12355677888999999997644
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=70.95 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-+|++|+|+|.|.+|+.+++.++..|++|++.++++++.+.+ .++|... ++. ..+.++..+.|+|+.+++....-
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~-~~~---~~l~~~l~~aDvVi~~~p~~~i~ 229 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI-TEMGLVP-FHT---DELKEHVKDIDICINTIPSMILN 229 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCEE-EEG---GGHHHHSTTCSEEEECCSSCCBC
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCeE-Ech---hhHHHHhhCCCEEEECCChhhhC
Confidence 478999999999999999999999999999999999887666 5677643 222 23455667899999999875533
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEE
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVG 299 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~ 299 (359)
...+..|++++.++.++.......+ .....++..+.
T Consensus 230 ~~~~~~mk~g~~lin~a~g~~~~~~--~~a~~~G~~~i 265 (300)
T 2rir_A 230 QTVLSSMTPKTLILDLASRPGGTDF--KYAEKQGIKAL 265 (300)
T ss_dssp HHHHTTSCTTCEEEECSSTTCSBCH--HHHHHHTCEEE
T ss_pred HHHHHhCCCCCEEEEEeCCCCCcCH--HHHHHCCCEEE
Confidence 5678899999999999865433333 33334555554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=64.52 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHh--cCCccEEEECCCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAA--MGTMDYIIDTVSAV 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~--~~~~d~vid~~g~~ 258 (359)
.+++|+|+|.|.+|..+++.++.. |.+|+++++++++.+.+ ++.|...+. |..+.+.+.++ ..++|+|+.+++..
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~-~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~ 116 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH-RSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHH 116 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH-HHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH-HHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCCh
Confidence 366899999999999999999998 99999999999998887 677876554 55555666666 45899999999976
Q ss_pred hhHHHH---HhccccCCEEEEe
Q 018246 259 HSLAPL---LGLLKVNGKLVTV 277 (359)
Q Consensus 259 ~~~~~~---~~~l~~~G~~v~~ 277 (359)
...... .+.+.+..+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 117 QGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE
Confidence 533333 3344445566654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.11 E-value=5.6e-06 Score=73.07 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=69.1
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCC-c--EEecCCCHHHHHHhc-CCcc
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGA-D--AFLVSSDPAKVKAAM-GTMD 249 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~-~--~v~~~~~~~~~~~~~-~~~d 249 (359)
..+.++++||.+|+|. |..+..+++.. +.+|++++.+++..+.+.+. .+. . .++.. +.. ..+. +.+|
T Consensus 108 ~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~--~~~~~~~~D 183 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-DIS--EGFDEKDVD 183 (277)
T ss_dssp TTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-CGG--GCCSCCSEE
T ss_pred hCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-CHH--HcccCCccC
Confidence 3458999999999887 88888999986 45999999999988777433 243 1 22211 111 1122 3699
Q ss_pred EEEECCCCh-hhHHHHHhccccCCEEEEec
Q 018246 250 YIIDTVSAV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 250 ~vid~~g~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
+|+...... ..+..+.+.|+++|+++...
T Consensus 184 ~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 184 ALFLDVPDPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp EEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 999877655 56889999999999998874
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-06 Score=76.41 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
.++.+||.+|+|. |..+..+++.. |.+|++++.+++..+.+.+....-.++..+.. .+....+.+|+|+.... ...
T Consensus 84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~-~~~ 160 (269)
T 1p91_A 84 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYA-PCK 160 (269)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESC-CCC
T ss_pred CCCCEEEEECCCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchh-hCCCCCCceeEEEEeCC-hhh
Confidence 5788999999988 98999999986 77999999999999888444332233222211 11111137999996444 445
Q ss_pred HHHHHhccccCCEEEEecC
Q 018246 261 LAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~ 279 (359)
+..+.+.|+|+|+++....
T Consensus 161 l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 161 AEELARVVKPGGWVITATP 179 (269)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEEc
Confidence 8999999999999988743
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=9.1e-06 Score=71.76 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=73.2
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vi 252 (359)
...++++++||.+|+|+.++.++.+|+..|++|++++.+++..+.+.+. .|.+ .++..+..+ +. ...||+|+
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~--d~~FDvV~ 193 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-ID--GLEFDVLM 193 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GG--GCCCSEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CC--CCCcCEEE
Confidence 3456899999999999888888888888899999999999988877432 3432 222222111 11 35899999
Q ss_pred ECCCCh---hhHHHHHhccccCCEEEEecC
Q 018246 253 DTVSAV---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 253 d~~g~~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.....+ ..++.+.+.|+|||+++....
T Consensus 194 ~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 194 VAALAEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 765543 468899999999999997753
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.8e-05 Score=71.99 Aligned_cols=112 Identities=16% Similarity=0.214 Sum_probs=84.7
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
+..-.|++|+|+|.|.+|...++.++.+|++|+++++++.+...+ ...|.... .+.++....|+++.+.+..
T Consensus 206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A-~~~G~~~~-------sL~eal~~ADVVilt~gt~ 277 (436)
T 3h9u_A 206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA-AMEGYQVL-------LVEDVVEEAHIFVTTTGND 277 (436)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-------CHHHHTTTCSEEEECSSCS
T ss_pred CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH-HHhCCeec-------CHHHHHhhCCEEEECCCCc
Confidence 333579999999999999999999999999999999998776666 56665432 2456667899999988876
Q ss_pred hhHH-HHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEE
Q 018246 259 HSLA-PLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGG 300 (359)
Q Consensus 259 ~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g 300 (359)
..++ ..+..|+++..++.+|.. ...++...+..+..+..+
T Consensus 278 ~iI~~e~l~~MK~gAIVINvgRg--~vEID~~~L~~~~~~~~~ 318 (436)
T 3h9u_A 278 DIITSEHFPRMRDDAIVCNIGHF--DTEIQVAWLKANAKERVE 318 (436)
T ss_dssp CSBCTTTGGGCCTTEEEEECSSS--GGGBCHHHHHHHCSEEEE
T ss_pred CccCHHHHhhcCCCcEEEEeCCC--CCccCHHHHHhhcCceEe
Confidence 5454 778899999999998743 445666666554444333
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-05 Score=71.79 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred hhHhHh-cCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKY-YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~-~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+.++.+ .+..-.|++|+|+|.|.+|+.+++.++.+|++|+++++++.+...+ ...|... ++ +.++....|+
T Consensus 234 vdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-~~~G~~v-v~------LeElL~~ADI 305 (464)
T 3n58_A 234 VDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-AMDGFEV-VT------LDDAASTADI 305 (464)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEE-CC------HHHHGGGCSE
T ss_pred HHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-HhcCcee-cc------HHHHHhhCCE
Confidence 444433 3444689999999999999999999999999999999988776555 4556542 21 3445568999
Q ss_pred EEECCCChhhH-HHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAVHSL-APLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~ 281 (359)
|+.+.+....+ ...+..|++++.++.+|...
T Consensus 306 Vv~atgt~~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 306 VVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp EEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred EEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence 99999877644 68899999999999998654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=74.87 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=74.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|++++|.|+|++|+++++.++..|++|+++++++.+...+ ...|++ +.+ ..+....+|+++++.|....+
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~A-a~~g~d-v~~------lee~~~~aDvVi~atG~~~vl 334 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQA-TMEGLQ-VLT------LEDVVSEADIFVTTTGNKDII 334 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-ECC------GGGTTTTCSEEEECSSCSCSB
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHhCCc-cCC------HHHHHHhcCEEEeCCCChhhh
Confidence 479999999999999999999999999999999999887777 455653 211 123445799999999976655
Q ss_pred -HHHHhccccCCEEEEecCCC
Q 018246 262 -APLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 262 -~~~~~~l~~~G~~v~~g~~~ 281 (359)
...++.|++++.++.+|...
T Consensus 335 ~~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 MLDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp CHHHHTTSCTTEEEEESSSTT
T ss_pred hHHHHHhcCCCeEEEEcCCCC
Confidence 45899999999999998653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=56.80 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChhh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVHS 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~ 260 (359)
-.++|+|+|.|.+|...++.++..|.+|+++++++++.+.+ ++.|...+. |..+.+.+.+.. ..+|+++.+++....
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~-~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL-RERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE 84 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence 35679999999999999999999999999999999999888 667876554 445555555543 489999999997651
Q ss_pred H---HHHHhccccCCEEEEe
Q 018246 261 L---APLLGLLKVNGKLVTV 277 (359)
Q Consensus 261 ~---~~~~~~l~~~G~~v~~ 277 (359)
. -...+.+.+..+++..
T Consensus 85 n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 85 AGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp HHHHHHHHHHHCSSSEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEE
Confidence 1 2345556667776654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=97.88 E-value=9.2e-05 Score=64.38 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.++++... ..|-.+.+.+.++ .+++|++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 86 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLL 86 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 5789999986 999999999999999999999999999888867766432 2355555443332 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++++|.. ...+.+...++.+|++|.++...
T Consensus 87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 141 (255)
T 4eso_A 87 HINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA 141 (255)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence 9998742 11234555667789999997644
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-05 Score=69.45 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=66.9
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHcC----------------CcEEecCC
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKLG----------------ADAFLVSS 236 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~g----------------~~~v~~~~ 236 (359)
+.... +.+|++||-+|+|. |..+..+++..| .+|++++.+++..+.+.+.+. .-.++..+
T Consensus 98 l~~l~-~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d 175 (336)
T 2b25_A 98 LSMMD-INPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 175 (336)
T ss_dssp HHHHT-CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred HHhcC-CCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence 33343 48999999999877 778888888766 599999999988777743221 11222221
Q ss_pred CHHHHHHhc-CCccEEEECCCChh-hHHHHHhccccCCEEEEecC
Q 018246 237 DPAKVKAAM-GTMDYIIDTVSAVH-SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 237 ~~~~~~~~~-~~~d~vid~~g~~~-~~~~~~~~l~~~G~~v~~g~ 279 (359)
-.+....+. +.+|+|+.....+. .+..+.+.|+|+|+++....
T Consensus 176 ~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 176 ISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp TTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred hHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 111111122 36999987655443 47899999999999997643
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00028 Score=60.87 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=68.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
++|||.|+ +++|++.++.+...|++|+++++++++.+.+.++.+.. ...|-.+.+.++++ .+++|+++++
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVNN 82 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNN 82 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 68999986 99999999999999999999999999988885444422 22355555444433 2589999999
Q ss_pred CCCh-------------------------hhHHHHHhcc-ccCCEEEEecCCC
Q 018246 255 VSAV-------------------------HSLAPLLGLL-KVNGKLVTVGLPE 281 (359)
Q Consensus 255 ~g~~-------------------------~~~~~~~~~l-~~~G~~v~~g~~~ 281 (359)
+|.. ...+.+...| +.+|++|.+++..
T Consensus 83 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~ 135 (247)
T 3ged_A 83 ACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTR 135 (247)
T ss_dssp CCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecc
Confidence 8742 1122334444 4579999987644
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=65.10 Aligned_cols=109 Identities=11% Similarity=0.162 Sum_probs=73.5
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC---hhhHHHHHHHcC----C-cEEecCCCHHHHH
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS---PKKESEAISKLG----A-DAFLVSSDPAKVK 242 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~---~~~~~~~~~~~g----~-~~v~~~~~~~~~~ 242 (359)
..+|+..+.--.++++||+|+|++|.+++..+...|+ +|+++.|+ .++.+.+.++++ . -.+++.++.+.+.
T Consensus 142 ~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~ 221 (315)
T 3tnl_A 142 MRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLR 221 (315)
T ss_dssp HHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred HHHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHH
Confidence 4455554432468899999999999999999999999 99999999 777766655443 2 2345555544455
Q ss_pred HhcCCccEEEECCCChhh-----HHH-HHhccccCCEEEEecCC
Q 018246 243 AAMGTMDYIIDTVSAVHS-----LAP-LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~~-----~~~-~~~~l~~~G~~v~~g~~ 280 (359)
+....+|+||+|++.... ... ....++++..++++-..
T Consensus 222 ~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~ 265 (315)
T 3tnl_A 222 KEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYK 265 (315)
T ss_dssp HHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCS
T ss_pred hhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccC
Confidence 555689999999874320 001 23456666666676544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00028 Score=61.13 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcEE---ecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADAF---LVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++.++..++ .|.+.. .|-.+++.++++ .++.
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 87 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV 87 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence 6889999886 9999999999999999999999999887665443 344332 244555444333 2489
Q ss_pred cEEEECCCCh-------------------------hhHHHHHhcc---ccCCEEEEecCCC
Q 018246 249 DYIIDTVSAV-------------------------HSLAPLLGLL---KVNGKLVTVGLPE 281 (359)
Q Consensus 249 d~vid~~g~~-------------------------~~~~~~~~~l---~~~G~~v~~g~~~ 281 (359)
|++++++|.. ...+.++..| ..+|++|.++...
T Consensus 88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~ 148 (255)
T 4g81_D 88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT 148 (255)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence 9999999852 1223455556 2468999997654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0003 Score=60.99 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
+|+++||.|+ +++|++.++.+...|++|+++++++++++.+.++ .|.+. ..|-.+.+.++++ .++.
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 85 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI 85 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 9999999999999999999999999887666443 45432 2355565544443 2589
Q ss_pred cEEEECCCCh--------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 249 DYIIDTVSAV--------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 249 d~vid~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
|++++++|.. ...+.++..|. .+|++|.++...
T Consensus 86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~ 146 (254)
T 4fn4_A 86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIA 146 (254)
T ss_dssp CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechh
Confidence 9999998731 11234555553 368999997644
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0001 Score=57.66 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=56.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEECCCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAA-MGTMDYIIDTVSAV 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~ 258 (359)
++++|+|+|+|.+|...++.++..|.+|+++++++++.+.+ ++.+...+. +..+.+.+.++ ..++|+++.+++..
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT-TTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 35679999999999999999999999999999998887666 455554332 34445555554 35899999999974
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00027 Score=55.28 Aligned_cols=75 Identities=21% Similarity=0.096 Sum_probs=60.4
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVH 259 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~ 259 (359)
..+|+|+|+|.+|...++.+...|.+|+++++++++.+.+ ++.+...+. |..+.+.+.++. .++|+++.+++...
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~-~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL-EDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 4679999999999999999999999999999999998888 566765433 455566666553 48999999999654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00051 Score=57.45 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=70.1
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhcCCc
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~ 248 (359)
+..... .++++||-+|+|. |..++.+++. +.+|++++.+++..+.+.+. .|.. .++..+..+.+. ....+
T Consensus 48 l~~l~~-~~~~~vLDlGcG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~ 123 (204)
T 3njr_A 48 LAALAP-RRGELLWDIGGGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLP 123 (204)
T ss_dssp HHHHCC-CTTCEEEEETCTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCC
T ss_pred HHhcCC-CCCCEEEEecCCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCC
Confidence 333443 7899999999986 8888888888 88999999999988776433 3433 233222222111 12479
Q ss_pred cEEEECCCChh-hHHHHHhccccCCEEEEecC
Q 018246 249 DYIIDTVSAVH-SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 249 d~vid~~g~~~-~~~~~~~~l~~~G~~v~~g~ 279 (359)
|+|+...+... .+..+.+.|+|+|+++....
T Consensus 124 D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 124 EAVFIGGGGSQALYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp SEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence 99997654332 67899999999999988643
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00031 Score=61.10 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=58.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|++++++.++.+.+.++++... ..|..+.+.+.++ .+++|++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 86 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL 86 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999986 999999999999999999999999998888767776432 2355555444433 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 87 v~~Ag~ 92 (259)
T 4e6p_A 87 VNNAAL 92 (259)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999984
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0004 Score=60.68 Aligned_cols=75 Identities=28% Similarity=0.398 Sum_probs=58.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF---LVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.... .|..+.+.+.++ .+++|++
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDIL 105 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999986 9999999999999999999999999998888777775422 355555444433 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 106 vnnAg~ 111 (266)
T 3grp_A 106 VNNAGI 111 (266)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999984
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.5e-05 Score=64.53 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHhc---CCccEEEECCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAAM---GTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~---~~~d~vid~~g 256 (359)
-.|+++||.|+ +++|++.++.+...|++|+++++++++.+.. ..-.+ ....|-.+.+.++++. ++.|+.++++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG 87 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP-RHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG 87 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC-CCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh-hcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 36999999986 9999999999999999999999998776533 11111 2334556665555543 58999999998
Q ss_pred Ch-----------------------hhHHHHHhccc-cCCEEEEecCCC
Q 018246 257 AV-----------------------HSLAPLLGLLK-VNGKLVTVGLPE 281 (359)
Q Consensus 257 ~~-----------------------~~~~~~~~~l~-~~G~~v~~g~~~ 281 (359)
.. ...+.+...|+ .+|++|.+++..
T Consensus 88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~ 136 (242)
T 4b79_A 88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY 136 (242)
T ss_dssp CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 42 11233455564 579999997644
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00045 Score=60.01 Aligned_cols=99 Identities=13% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCC-c---EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGA-D---AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~-~---~v~~~~~~~~~~~~-------~ 245 (359)
.|+++||.|+ | ++|++.++.+...|++|++++++++..+.+.+ +.+. . ...|-.+.+.+.++ .
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV 84 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6889999986 5 89999999999999999999999877665533 3342 1 22455555443333 3
Q ss_pred CCccEEEECCCChh-----------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 246 GTMDYIIDTVSAVH-----------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 246 ~~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+++|++++++|... ........++.+|++|.+++..
T Consensus 85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~ 149 (256)
T 4fs3_A 85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLG 149 (256)
T ss_dssp CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGG
T ss_pred CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 58999999887310 0122345667889999997644
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00027 Score=62.02 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=57.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.. ...|..+.+.+.++ .+++|++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 106 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDVL 106 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5688999886 99999999999999999999999999888876777632 22355555444433 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 107 VnnAg~ 112 (272)
T 4dyv_A 107 FNNAGT 112 (272)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999884
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00045 Score=60.74 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++... ..|-.+.+.+.++ .+++|++
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 105 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVL 105 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999986 999999999999999999999999998888767776432 2355555444333 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 106 v~nAg~ 111 (277)
T 4dqx_A 106 VNNAGF 111 (277)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999984
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00031 Score=60.71 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=57.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+.++.. ...|-.+.+.+.++ .+++|++
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 87 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL 87 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999986 99999999999999999999999998887776665532 23455665444433 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 88 v~nAg~ 93 (248)
T 3op4_A 88 VNNAGI 93 (248)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999884
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00025 Score=62.27 Aligned_cols=97 Identities=24% Similarity=0.278 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHc----C--Cc--EEecCCCHHHHHHh-cCC
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKL----G--AD--AFLVSSDPAKVKAA-MGT 247 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~----g--~~--~v~~~~~~~~~~~~-~~~ 247 (359)
..++++++||.+|+| .|..+..+++.. +.+|++++.+++..+.+.+.+ | .. .++..+ .... .. .+.
T Consensus 95 ~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d-~~~~-~~~~~~ 171 (280)
T 1i9g_A 95 GDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD-LADS-ELPDGS 171 (280)
T ss_dssp TTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC-GGGC-CCCTTC
T ss_pred cCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc-hHhc-CCCCCc
Confidence 345899999999988 688888999875 459999999999887774432 4 22 222221 1111 11 237
Q ss_pred ccEEEECCCCh-hhHHHHHhccccCCEEEEec
Q 018246 248 MDYIIDTVSAV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 248 ~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
+|+|+...... ..+..+.+.|+++|+++...
T Consensus 172 ~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 172 VDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp EEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 99998766654 56889999999999998864
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00039 Score=59.36 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-cEEe-cCCCHHHHHHhcCCccEEEECCCChh
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-DAFL-VSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
.+.+|||.|+ |.+|...++.+...|++|++++|++++.+.+ ...++ ..+. |.. +.+.+..+++|+||+++|...
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~-~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~~~ 96 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL-RERGASDIVVANLE--EDFSHAFASIDAVVFAAGSGP 96 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHTTCSEEEECCTT--SCCGGGGTTCSEEEECCCCCT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH-HhCCCceEEEcccH--HHHHHHHcCCCEEEECCCCCC
Confidence 5789999997 9999999999999999999999999988777 55566 4332 333 334445568999999998531
Q ss_pred -------------hHHHHHhcccc--CCEEEEecCCC
Q 018246 260 -------------SLAPLLGLLKV--NGKLVTVGLPE 281 (359)
Q Consensus 260 -------------~~~~~~~~l~~--~G~~v~~g~~~ 281 (359)
....+++.++. .+++|.++...
T Consensus 97 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 133 (236)
T 3e8x_A 97 HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG 133 (236)
T ss_dssp TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 01223333332 37899987654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00031 Score=61.81 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=58.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.. ...|..+.+.+.++ .+++|++
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 107 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL 107 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5788999986 99999999999999999999999999888877777632 22355665444333 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 108 vnnAg~ 113 (277)
T 3gvc_A 108 VANAGV 113 (277)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999984
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00057 Score=62.64 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=75.1
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
-+|+|+|+|.+|..+++.+.. ...|.+++++.++.+.+ ++......+|..+.+.+..+..+.|+|+++++.......+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~-~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~ 94 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV-KEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSI 94 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH-TTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH-hccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchHH
Confidence 369999999999998887754 46899999999888777 4444344567777788888888999999999876546677
Q ss_pred HhccccCCEEEEecCCC
Q 018246 265 LGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 265 ~~~l~~~G~~v~~g~~~ 281 (359)
-.|++.+-.++++....
T Consensus 95 ~~~~~~g~~yvD~s~~~ 111 (365)
T 3abi_A 95 KAAIKSKVDMVDVSFMP 111 (365)
T ss_dssp HHHHHHTCEEEECCCCS
T ss_pred HHHHhcCcceEeeeccc
Confidence 78889999999986543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00048 Score=59.35 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=58.7
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHhc---CCccEEEEC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAAM---GTMDYIIDT 254 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~---~~~d~vid~ 254 (359)
.++++|||.|+ |++|...++.+...|++|+++++++++.+.+.+++.... ..|..+.+.+.++. +++|+++++
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ 91 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCN 91 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEEC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 57899999986 999999999999999999999999998888766665432 23445555444443 479999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 92 Ag~ 94 (249)
T 3f9i_A 92 AGI 94 (249)
T ss_dssp CC-
T ss_pred CCC
Confidence 884
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00093 Score=51.74 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEECCCChh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAA-MGTMDYIIDTVSAVH 259 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~ 259 (359)
+.+|+|+|+|.+|...++.+...|.+|+++++++++.+.+.++++...+. +..+.+.+.+. ..++|+|+.+++...
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence 35799999999999999999999999999999998887774556765433 33444444433 358999999998764
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00087 Score=58.41 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=70.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.. ...|-.+.+.+.++ .+.+|++
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l 84 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV 84 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 4678999986 99999999999999999999999998888776666532 12355555444333 2478999
Q ss_pred EECCCChh-------------------------hHHHHHhccccCCEEEEecCCCC
Q 018246 252 IDTVSAVH-------------------------SLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 252 id~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
++++|... ..+.+...++.+|++|.++....
T Consensus 85 vnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~ 140 (263)
T 2a4k_A 85 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG 140 (263)
T ss_dssp EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence 99987321 11233344434799999976543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00033 Score=61.76 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=54.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC----Cc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG----AD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g----~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++. .. ...|-.+.+.+.++ .++
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 111 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR 111 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999986 999999999999999999999999988766644432 11 22355665444333 258
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 112 iD~lvnnAG~ 121 (281)
T 4dry_A 112 LDLLVNNAGS 121 (281)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0006 Score=57.54 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=68.4
Q ss_pred CEEEEECC-chHHHHHHHHHH-HCCCeEEEEeCChh-hHHHHHHHcC--Cc-EEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 185 KHLGVAGL-GGLGHVAVKIGK-AFGLKVTVISTSPK-KESEAISKLG--AD-AFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~-~~g~~V~~v~~~~~-~~~~~~~~~g--~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
++|||.|+ |.+|...++.+. ..|++|++++++++ +.+.+. ..+ .. ...|..+.+.+.++..++|++|+++|..
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~ 84 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES 84 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence 46999986 999999998888 89999999999988 665552 223 22 2235666777777778999999999863
Q ss_pred hh-HHHHHhccccC--CEEEEecCCC
Q 018246 259 HS-LAPLLGLLKVN--GKLVTVGLPE 281 (359)
Q Consensus 259 ~~-~~~~~~~l~~~--G~~v~~g~~~ 281 (359)
.. ...+++.++.. +++|.++...
T Consensus 85 n~~~~~~~~~~~~~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 85 GSDMASIVKALSRXNIRRVIGVSMAG 110 (221)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred ChhHHHHHHHHHhcCCCeEEEEeece
Confidence 21 33445555433 6898886544
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00056 Score=60.49 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=72.3
Q ss_pred hhHhHhc-CCCCCCCEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CC-cEEecCCCHHHHHHh
Q 018246 172 YSPMKYY-GMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GA-DAFLVSSDPAKVKAA 244 (359)
Q Consensus 172 ~~~l~~~-~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~ 244 (359)
...++.. +.--+|+++||+| +|++|.+++..+...|++|++++|++++.+.+.+++ +. ....|..+.+.+.+.
T Consensus 106 ~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~ 185 (287)
T 1lu9_A 106 VALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEA 185 (287)
T ss_dssp HHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHH
T ss_pred HHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHH
Confidence 3444443 2223678999999 699999999999999999999999988877664443 32 233466666667777
Q ss_pred cCCccEEEECCCChh--hHHHHHhccccCCEEEEecC
Q 018246 245 MGTMDYIIDTVSAVH--SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 245 ~~~~d~vid~~g~~~--~~~~~~~~l~~~G~~v~~g~ 279 (359)
...+|+++++++... .-..-+..+...-.+..+..
T Consensus 186 ~~~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~ 222 (287)
T 1lu9_A 186 VKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNA 222 (287)
T ss_dssp TTTCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCC
T ss_pred HHhCCEEEECCCccccCCChhHcCchHHHHHHHHhhh
Confidence 778999999997421 00112333455556665543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=62.44 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=70.6
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEE
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v 251 (359)
..+++..+.--++++++|+|+|++|.+++..+...|++|++++|+.++.+.+.++++...-++..+.+.+.+ +++|++
T Consensus 107 ~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~--~~~Div 184 (271)
T 1nyt_A 107 LSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEG--HEFDLI 184 (271)
T ss_dssp HHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTT--CCCSEE
T ss_pred HHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhcc--CCCCEE
Confidence 344544332236789999999999999999999999999999999998877767765310011111111111 689999
Q ss_pred EECCCChhhHH----HHHhccccCCEEEEecCC
Q 018246 252 IDTVSAVHSLA----PLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 252 id~~g~~~~~~----~~~~~l~~~G~~v~~g~~ 280 (359)
+++++.... . .....++++..++++...
T Consensus 185 Vn~t~~~~~-~~~~~i~~~~l~~~~~v~D~~y~ 216 (271)
T 1nyt_A 185 INATSSGIS-GDIPAIPSSLIHPGIYCYDMFYQ 216 (271)
T ss_dssp EECCSCGGG-TCCCCCCGGGCCTTCEEEESCCC
T ss_pred EECCCCCCC-CCCCCCCHHHcCCCCEEEEeccC
Confidence 999997652 1 012345666777777654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00066 Score=59.25 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=56.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|++.++.+...|++|+++++++++.+.+.+++ +... ..|-.+.+.+.++ .+++
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 82 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI 82 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 99999999999999999999999998877664443 4322 2355555444333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 83 D~lVnnAG~ 91 (264)
T 3tfo_A 83 DVLVNNAGV 91 (264)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00047 Score=60.64 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=57.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++... ..|..+.+.+.++ .+++|++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l 83 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL 83 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4678999986 999999999999999999999999998887766666432 2355555444433 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 84 v~~Ag~ 89 (281)
T 3m1a_A 84 VNNAGR 89 (281)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999984
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0006 Score=60.60 Aligned_cols=106 Identities=16% Similarity=0.117 Sum_probs=74.6
Q ss_pred hhHhHhcC-CCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCC
Q 018246 172 YSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 172 ~~~l~~~~-~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~ 247 (359)
..++...+ .--.+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++.. .+++ .+.+.+...+
T Consensus 128 ~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~---~~~~~~~~~~ 204 (297)
T 2egg_A 128 VQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS---LAEAETRLAE 204 (297)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC---HHHHHHTGGG
T ss_pred HHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee---HHHHHhhhcc
Confidence 33444443 21367899999999999999999999998 9999999999988887777752 2222 1334445568
Q ss_pred ccEEEECCCChhh-----HHHHHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAVHS-----LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~~~-----~~~~~~~l~~~G~~v~~g~~ 280 (359)
+|+|++|++.... .......++++..++++...
T Consensus 205 aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~ 242 (297)
T 2egg_A 205 YDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYN 242 (297)
T ss_dssp CSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCS
T ss_pred CCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCC
Confidence 9999999986541 00112456777788888664
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00063 Score=58.68 Aligned_cols=75 Identities=29% Similarity=0.357 Sum_probs=58.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF---LVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.... .|-.+.+.+.++ .+++|++
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 84 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL 84 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence 5789999986 9999999999999999999999999988888777775432 244554443333 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 85 v~nAg~ 90 (247)
T 3rwb_A 85 VNNASI 90 (247)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999984
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00077 Score=58.99 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=67.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC--cEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA--DAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
-.+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++. ..++...+ +.. ..+|+||++++..
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~---l~~--~~~DivInaTp~g 192 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA---LEG--QSFDIVVNATSAS 192 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG---GTT--CCCSEEEECSSGG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH---hcc--cCCCEEEECCCCC
Confidence 368899999999999999999999997 999999999998888777764 22332221 111 5799999998754
Q ss_pred hhH---HHHHhccccCCEEEEecCC
Q 018246 259 HSL---APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 259 ~~~---~~~~~~l~~~G~~v~~g~~ 280 (359)
..- ......++++..++++-..
T Consensus 193 m~~~~~~i~~~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 193 LTADLPPLPADVLGEAALAYELAYG 217 (272)
T ss_dssp GGTCCCCCCGGGGTTCSEEEESSCS
T ss_pred CCCCCCCCCHHHhCcCCEEEEeecC
Confidence 310 0123456777777777554
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00058 Score=60.80 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++ .+++
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 109 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGV 109 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 6789999986 99999999999999999999999998877664443 332 22455555444433 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 110 d~lvnnAg~ 118 (301)
T 3tjr_A 110 DVVFSNAGI 118 (301)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999999984
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00048 Score=61.46 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=70.3
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC---hhhHHHHHHHcC----Cc-EEecCCCHHHHH
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS---PKKESEAISKLG----AD-AFLVSSDPAKVK 242 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~---~~~~~~~~~~~g----~~-~v~~~~~~~~~~ 242 (359)
..+++..+.--.++++||+|+|++|.+++..+...|+ +|+++.|+ .++.+.+.++++ .. .+++..+.+...
T Consensus 136 ~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~ 215 (312)
T 3t4e_A 136 IRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFT 215 (312)
T ss_dssp HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhH
Confidence 3445544332468899999999999999999999999 89999999 777666655443 21 334444432223
Q ss_pred HhcCCccEEEECCCChhh--HHH----HHhccccCCEEEEecCC
Q 018246 243 AAMGTMDYIIDTVSAVHS--LAP----LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~~--~~~----~~~~l~~~G~~v~~g~~ 280 (359)
+....+|+||+|++.... -.. -...+.++..++++-..
T Consensus 216 ~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~ 259 (312)
T 3t4e_A 216 EALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYN 259 (312)
T ss_dssp HHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCS
T ss_pred hhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccC
Confidence 334468999999875320 000 12456666666666443
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00092 Score=58.63 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=55.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---C---Cc---EEecCCCHHHHHHhc-------
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---G---AD---AFLVSSDPAKVKAAM------- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g---~~---~v~~~~~~~~~~~~~------- 245 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ . .. ...|..+.+.+.++.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 84 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence 4678999986 99999999999999999999999998877665544 2 11 223555554444332
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 85 g~id~lv~~Ag~ 96 (278)
T 1spx_A 85 GKLDILVNNAGA 96 (278)
T ss_dssp SCCCEEEECCC-
T ss_pred CCCCEEEECCCC
Confidence 489999999874
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0013 Score=56.76 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=56.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF---LVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.++++.... .|..+.+.+.++ .+.+|++
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 84 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL 84 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4678999986 9999999999999999999999999888777566654321 344555443332 2478999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 85 v~~Ag~ 90 (253)
T 1hxh_A 85 VNNAGI 90 (253)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999884
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0015 Score=56.37 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=54.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----C--Cc-EEecC--CCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----G--AD-AFLVS--SDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g--~~-~v~~~--~~~~~~~~~-------~ 245 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ + .. ...|. .+.+.+.++ .
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY 90 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence 5789999986 99999999999999999999999998876654433 2 22 22344 444433332 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 91 g~id~lv~nAg~ 102 (252)
T 3f1l_A 91 PRLDGVLHNAGL 102 (252)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 479999999884
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00064 Score=59.26 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=66.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHH-CCCeEEEEeCChhhHHHHHHHc---CC--c-EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKA-FGLKVTVISTSPKKESEAISKL---GA--D-AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~-~g~~V~~v~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~~-------~~ 247 (359)
.+++|||.|+ |++|..+++.+.. .|++|++++++.++.+.+.+++ +. . ...|-.+.+.+.++. ++
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 5678999986 9999999988888 9999999999987766553433 32 2 223555554444332 48
Q ss_pred ccEEEECCCCh----------h---------------hHHHHHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAV----------H---------------SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~----------~---------------~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+|++|+++|.. . .++.+...+++.|++|.++..
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~ 140 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI 140 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence 99999998732 0 122344455567899988653
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00087 Score=57.68 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=57.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++|... ..|-.+.+.+.++ .+++|++++
T Consensus 4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn 83 (245)
T 1uls_A 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH 83 (245)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999986 999999999999999999999999988877756666432 2355555444333 247999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 84 ~Ag~ 87 (245)
T 1uls_A 84 YAGI 87 (245)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9983
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0012 Score=53.31 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=69.2
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAIS---KLGAD--AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
++++++||.+|+|. |..+..+++.. +.+|++++.+++..+.+.+ +.|.. ..+..+..+.+....+.+|+|+..
T Consensus 23 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence 37899999999986 88899999887 4599999999988777733 23432 222222222222222579999976
Q ss_pred CCCh--hhHHHHHhccccCCEEEEecC
Q 018246 255 VSAV--HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 255 ~g~~--~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.... ..+..+.+.|+++|+++....
T Consensus 102 ~~~~~~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 102 GGLTAPGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp C-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred CcccHHHHHHHHHHhcCCCCEEEEEee
Confidence 5433 368999999999999987643
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0011 Score=56.69 Aligned_cols=75 Identities=19% Similarity=0.325 Sum_probs=57.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-CcE-EecCCCHHHHHHhc---CCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-ADA-FLVSSDPAKVKAAM---GTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~~---~~~d~vid~~g 256 (359)
+++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++. ... ..|..+.+.+.++. +++|++|+++|
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag 85 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA 85 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCc
Confidence 5789999986 999999999999999999999999888776655543 322 23556665555554 36899999987
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 86 ~ 86 (244)
T 3d3w_A 86 V 86 (244)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0013 Score=57.00 Aligned_cols=74 Identities=23% Similarity=0.267 Sum_probs=54.0
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhc-------CCcc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAM-------GTMD 249 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-------~~~d 249 (359)
++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++. +++|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 81 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 468999986 99999999999999999999999988766553332 432 123555554444332 4899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 82 ~lv~nAg~ 89 (256)
T 1geg_A 82 VIVNNAGV 89 (256)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00086 Score=58.86 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=54.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC--c---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA--D---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~--~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.++ .+. . ...|..+.+.+.++ .+
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 4678999986 9999999999999999999999998876655332 231 1 12355555444333 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++|+++|.
T Consensus 111 ~iD~vi~~Ag~ 121 (279)
T 1xg5_A 111 GVDICINNAGL 121 (279)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999999873
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0019 Score=57.08 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=67.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHH-H---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESE-A---ISKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~-~---~~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++... + .++.|.+. ..|..+.+.+.++ .++
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 125 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS 125 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999986 999999999999999999999988764222 2 23445332 2355555443333 248
Q ss_pred ccEEEECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|++++++|.. ...+.++..|+.+|++|.++...
T Consensus 126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~ 185 (291)
T 3ijr_A 126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIV 185 (291)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTH
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechH
Confidence 99999987731 12334556677889999987543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.002 Score=56.12 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-----Cc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-----AD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-----~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++. .. ...|..+.+.+.++ .+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4678999986 999999999999999999999999887665434332 11 12355555444333 24
Q ss_pred CccEEEECCCChh-----------------hHHHHHhcccc-----CCEEEEecCCC
Q 018246 247 TMDYIIDTVSAVH-----------------SLAPLLGLLKV-----NGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~~-----------------~~~~~~~~l~~-----~G~~v~~g~~~ 281 (359)
++|++++++|... ....++..+.. .|+++.++...
T Consensus 86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~ 142 (267)
T 2gdz_A 86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 142 (267)
T ss_dssp CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence 7899999998420 11234444533 58999887543
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0021 Score=56.18 Aligned_cols=98 Identities=19% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-hhHHHHH---HHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-KKESEAI---SKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-~~~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.+.++.+...|++|++++++. ++.+.+. ++.|... ..|..+.+.+.++ .++
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 109 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG 109 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 6789999986 9999999999999999999986554 4444332 3345332 2355555444333 248
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+|++++++|.. ...+.+...|+.+|++|.++..
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~ 167 (271)
T 3v2g_A 110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN 167 (271)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence 99999998741 1234456677788999998653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00092 Score=58.52 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+. .+.. ...|-.+.+.+.++ .+++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 106 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL 106 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 5788999986 9999999999999999999999998877655333 3322 23455665444433 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 107 D~lvnnAg~ 115 (270)
T 3ftp_A 107 NVLVNNAGI 115 (270)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999983
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00055 Score=59.94 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=58.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhc-------CCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~-------~~~d~v 251 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.. ...|..+.+.+.++. +++|++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 89 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV 89 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999986 99999999999999999999999999888876777632 234556654444332 489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 90 v~nAg~ 95 (271)
T 3tzq_B 90 DNNAAH 95 (271)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0022 Score=55.74 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=55.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+..+ .+.+
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 107 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRC 107 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 5789999986 99999999999999999999999998876664443 332 22355555444333 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 108 d~lv~~Ag~ 116 (262)
T 3rkr_A 108 DVLVNNAGV 116 (262)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999999985
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0006 Score=59.06 Aligned_cols=75 Identities=21% Similarity=0.318 Sum_probs=57.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHhc-------CCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~-------~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++... ..|..+.+.+.++. +++|++
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l 83 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL 83 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4678999986 999999999999999999999999988877756665321 23555554444332 489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 84 v~nAg~ 89 (254)
T 1hdc_A 84 VNNAGI 89 (254)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00086 Score=57.83 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE----EecCCCHHHHHHh------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA----FLVSSDPAKVKAA------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~----v~~~~~~~~~~~~------~~~~d~v 251 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++... ..|..+.+.+.++ .+++|++
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l 89 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL 89 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence 5688999986 999999999999999999999999988777656655322 2355555444433 2589999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 90 i~~Ag~ 95 (254)
T 2wsb_A 90 VNSAGI 95 (254)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999874
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0018 Score=56.29 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=55.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ |... ..|..+.+.+.++ .+++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 85 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI 85 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 4688999986 99999999999999999999999988776554433 4321 2355555443332 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 86 d~lv~nAg~ 94 (262)
T 1zem_A 86 DFLFNNAGY 94 (262)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0017 Score=56.52 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCCEEEEECC-ch--HHHHHHHHHHHCCCeEEEEeCChhhHH---HHHHHcCC---c-EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GG--LGHVAVKIGKAFGLKVTVISTSPKKES---EAISKLGA---D-AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~--vG~~a~~la~~~g~~V~~v~~~~~~~~---~~~~~~g~---~-~v~~~~~~~~~~~~-------~ 245 (359)
.++++||.|+ |. +|.+.++.+...|++|+++++++...+ .+.++.+. . ...|-.+.+.+.++ .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999986 55 999999999999999999998875433 33334442 1 22344444333332 2
Q ss_pred CCccEEEECCCChh-----------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 246 GTMDYIIDTVSAVH-----------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 246 ~~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+|++++++|... ..+.+...++++|+++.++...
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~ 150 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLG 150 (266)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 47999999987421 1234556677789999997644
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=55.01 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid 253 (359)
.++++++||.+|+|. |..+..+++... .+|++++.+++..+.+.+. .|.+ .++..+..+... ....+|+|+.
T Consensus 37 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~ 114 (204)
T 3e05_A 37 RLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPDRVFI 114 (204)
T ss_dssp TCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCSEEEE
T ss_pred CCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCCEEEE
Confidence 348899999999985 888889998863 5999999999988777432 3332 222222111111 1147999998
Q ss_pred CCCC---hhhHHHHHhccccCCEEEEec
Q 018246 254 TVSA---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 254 ~~g~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
.... ...+..+.+.|+++|+++...
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 115 GGSGGMLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp SCCTTCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 7652 345788999999999998864
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0021 Score=56.23 Aligned_cols=75 Identities=19% Similarity=0.345 Sum_probs=55.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c---EEecCCCHHHHHHhc-------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D---AFLVSSDPAKVKAAM-------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~~-------~~~d 249 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++. . ...|..+.+.+.++. +++|
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 94 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD 94 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 5678999986 9999999999999999999999998877666555542 1 123555554444332 4899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|+++|.
T Consensus 95 ~li~~Ag~ 102 (278)
T 2bgk_A 95 IMFGNVGV 102 (278)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998873
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00023 Score=60.96 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=69.2
Q ss_pred CEEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
.+|||.|+ |.+|..+++.+...| ++|++++|++++.+.+ ...++. ...|..+.+.+.++..++|+||.+.+...
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~ 102 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-YPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLD 102 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-CCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTHH
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-ccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCchh
Confidence 57999986 999999999999999 7999999998765433 111222 22356677778888889999999988754
Q ss_pred -hHHHHHhccccC--CEEEEecCCC
Q 018246 260 -SLAPLLGLLKVN--GKLVTVGLPE 281 (359)
Q Consensus 260 -~~~~~~~~l~~~--G~~v~~g~~~ 281 (359)
..+.+++.++.. +++|.++...
T Consensus 103 ~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 103 IQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEecce
Confidence 123455555443 6899887644
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0013 Score=57.03 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHHHHHc----CCcE-E--ecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAISKL----GADA-F--LVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~~~~----g~~~-v--~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++ .+.+.+++ +... . .|-.+.+.+.++ .+
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 82 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG 82 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4678999986 999999999999999999999998877 55543333 4332 1 355555444333 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 83 ~iD~lv~~Ag~ 93 (260)
T 1x1t_A 83 RIDILVNNAGI 93 (260)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 79999999873
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=55.42 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHh-------cCCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.++++ .. ...|..+.+.+.++ .+++|+++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 83 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV 83 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3568999886 999999999999999999999999888777655554 22 22355555443332 24799999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|.
T Consensus 84 ~~Ag~ 88 (234)
T 2ehd_A 84 NNAGV 88 (234)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99873
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00069 Score=64.07 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=69.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
.+.+|+|+|+|.+|.+++..+... |.+|++++|++++.+.+.+..+... .++..+.+.+.++..++|+|++|++....
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~ 101 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH 101 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh
Confidence 456899999999999999888877 6799999999988877744444432 34555555555555689999999997542
Q ss_pred HHHHHhccccCCEEEEecC
Q 018246 261 LAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~ 279 (359)
......+++.+-.+++...
T Consensus 102 ~~v~~a~l~~g~~vvd~~~ 120 (467)
T 2axq_A 102 PNVVKSAIRTKTDVVTSSY 120 (467)
T ss_dssp HHHHHHHHHHTCEEEECSC
T ss_pred HHHHHHHHhcCCEEEEeec
Confidence 3334456777777777643
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0014 Score=56.31 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=53.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.+.++.+...|++|+++++ ++++.+.+.++ .+.. ...|..+.+.+.++ .++
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ 82 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 99999999999999999999998 77666554333 3432 22355555444433 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 83 id~lv~nAg~ 92 (246)
T 2uvd_A 83 VDILVNNAGV 92 (246)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00084 Score=57.44 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.++++.. ...|-.+.+.+.++ .+++|+++
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv 82 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL 82 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 578999986 99999999999999999999999999888776665432 22355555443333 24799999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|.
T Consensus 83 nnAg~ 87 (235)
T 3l6e_A 83 HCAGT 87 (235)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99884
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0008 Score=58.39 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=58.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++... ..|..+.+.+.++ .+++|++
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 87 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL 87 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5789999986 999999999999999999999999999888877777432 2355555443333 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 88 i~~Ag~ 93 (261)
T 3n74_A 88 VNNAGI 93 (261)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999873
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00072 Score=63.94 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=73.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|++|.|+|.|.+|..+++.++.+|++|++.++++.+...+ ...|... . .+.++....|+|+.+++....+
T Consensus 275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-~~~G~~~-~------~l~ell~~aDiVi~~~~t~~lI 346 (494)
T 3d64_A 275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-AMEGYRV-V------TMEYAADKADIFVTATGNYHVI 346 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-HTTTCEE-C------CHHHHTTTCSEEEECSSSSCSB
T ss_pred cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-HHcCCEe-C------CHHHHHhcCCEEEECCCccccc
Confidence 578999999999999999999999999999999998775344 3456542 1 2456667899999998765544
Q ss_pred -HHHHhccccCCEEEEecCC
Q 018246 262 -APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 262 -~~~~~~l~~~G~~v~~g~~ 280 (359)
...+..|+++..++.+|..
T Consensus 347 ~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 347 NHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp CHHHHHHCCTTEEEEECSSS
T ss_pred CHHHHhhCCCCcEEEEcCCC
Confidence 5778999999999999754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0036 Score=49.46 Aligned_cols=94 Identities=21% Similarity=0.121 Sum_probs=64.4
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCC-hhhHHHHHHHc--CCcEEe-cCCCHHHHHHh-cCCccEEEECCCCh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS-PKKESEAISKL--GADAFL-VSSDPAKVKAA-MGTMDYIIDTVSAV 258 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~-~~~~~~~~~~~--g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~ 258 (359)
..+|+|+|+|.+|...++.+...|.+|++++++ +++.+.+.+.+ |...+. |..+.+.+.+. ..++|+|+-+++..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 457899999999999999999999999999997 45555553333 444433 34445556555 46899999999876
Q ss_pred h---hHHHHHhccccCCEEEEe
Q 018246 259 H---SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 259 ~---~~~~~~~~l~~~G~~v~~ 277 (359)
. ......+.+.+..+++..
T Consensus 83 ~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 83 ADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE
Confidence 5 112334445455666654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0023 Score=56.27 Aligned_cols=99 Identities=23% Similarity=0.257 Sum_probs=66.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHH---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEA---ISKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~---~~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|++++++.++ .+.+ +++.|.+. ..|..+.+.+.++ .++
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 107 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 107 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999986 999999999999999999999988654 2222 13445332 2355554433332 247
Q ss_pred ccEEEECCCChh-------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAVH-------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|++++++|... .++.+...|+.+|++|.++...
T Consensus 108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 166 (283)
T 1g0o_A 108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT 166 (283)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechh
Confidence 999999988421 1234555666779999997643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0014 Score=58.89 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=55.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC--c---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA--D---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~--~---~v~~~~~~~~~~~~-------~~ 246 (359)
.+++|||.|+ |++|..+++.+...|++|+++++++++.+.+.+.+ +. . ...|..+.+.+.++ .+
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG 86 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 5789999986 99999999999999999999999998876664433 22 1 22355555443333 25
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 87 ~id~lv~nAg~ 97 (319)
T 3ioy_A 87 PVSILCNNAGV 97 (319)
T ss_dssp CEEEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 89999999983
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=55.38 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=73.1
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
.|.+|||+|+|.+|...++.+...|++|++++.... +++.+.++.+...+-..-.. .-..++|+||-+++.+. .
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~----~dL~~adLVIaAT~d~~-~ 104 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGE----EDLLNVFFIVVATNDQA-V 104 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCG----GGSSSCSEEEECCCCTH-H
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCH----hHhCCCCEEEECCCCHH-H
Confidence 578899999999999999999999999999987653 34444333334433211111 12348999999999987 6
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHHHHh-cCcEEEEeecC
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFALVG-ARRLVGGSNVG 304 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-k~~~i~g~~~~ 304 (359)
+..+...+..|..|.+.......+|-+...+. ..+++.-+..+
T Consensus 105 N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G 148 (223)
T 3dfz_A 105 NKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDG 148 (223)
T ss_dssp HHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTT
T ss_pred HHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCC
Confidence 66666556688888886655433333333333 34565544433
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0019 Score=56.87 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=67.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC------------hhhHHHHH---HHcCCc---EEecCCCHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS------------PKKESEAI---SKLGAD---AFLVSSDPAKVKA 243 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~------------~~~~~~~~---~~~g~~---~v~~~~~~~~~~~ 243 (359)
.|+++||.|+ |++|.++++.+...|++|++++++ .++.+.+. +..+.. ...|..+.+.+.+
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 88 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR 88 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 5789999986 999999999999999999999987 44443332 233432 2235556544433
Q ss_pred h-------cCCccEEEECCCCh-----------------------hhHHHHHhccccCCEEEEecCC
Q 018246 244 A-------MGTMDYIIDTVSAV-----------------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 244 ~-------~~~~d~vid~~g~~-----------------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+ .+++|++++++|.. ...+.++..|..+|+++.++..
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~ 155 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV 155 (287)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence 3 24899999998842 1123455666778999998753
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0008 Score=58.74 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=55.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHhc---CCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAAM---GTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~~---~~~d~ 250 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+...+++ +.. ...|..+.+.+.++. +++|+
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 88 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI 88 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence 5788999986 99999999999999999999999988766554433 221 123455555444443 48999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
+++++|.
T Consensus 89 lv~nAg~ 95 (267)
T 3t4x_A 89 LINNLGI 95 (267)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999984
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0021 Score=56.99 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=68.0
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChhhHH---HHHHHcCCcE--EecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPKKES---EAISKLGADA--FLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~~~~---~~~~~~g~~~--v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ | ++|.++++.+...|++|++++++++..+ .+.++.+... ..|-.+.+.+.++. ++
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS 108 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999987 5 9999999999999999999999875433 3334445322 23556654444332 58
Q ss_pred ccEEEECCCChh-----------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAVH-----------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|++++++|... ..+.+...|+.+|++|.++...
T Consensus 109 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~ 171 (296)
T 3k31_A 109 LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYG 171 (296)
T ss_dssp CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehh
Confidence 999999997421 1233455666789999987543
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=57.96 Aligned_cols=99 Identities=14% Similarity=0.265 Sum_probs=67.9
Q ss_pred CCCEEEEEC---CchHHHHHHHHHHHCCCeEEEEeCChhh-HHHHHHHcCC--c-EEecCCCHHHHHHh-------cC--
Q 018246 183 PGKHLGVAG---LGGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAISKLGA--D-AFLVSSDPAKVKAA-------MG-- 246 (359)
Q Consensus 183 ~g~~VlI~G---~g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~~~~g~--~-~v~~~~~~~~~~~~-------~~-- 246 (359)
.++++||.| +|++|.++++.+...|++|+++++++++ .+.+.++++. . ...|..+.+.+.++ .+
T Consensus 6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~ 85 (269)
T 2h7i_A 6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG 85 (269)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 468899987 4899999999999999999999998766 3555455552 2 22455665444333 23
Q ss_pred -CccEEEECCCChh------------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 247 -TMDYIIDTVSAVH------------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 247 -~~d~vid~~g~~~------------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++|++++++|... ..+.++..|.++|++|.++...
T Consensus 86 ~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~ 151 (269)
T 2h7i_A 86 NKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDP 151 (269)
T ss_dssp CCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCC
T ss_pred CCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcc
Confidence 7999999987321 1233445556679999987543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=57.39 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=57.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHhc-------CCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~-------~~~d~v 251 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.++++... ..|..+.+.+.++. +++|++
T Consensus 11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 90 (265)
T 2o23_A 11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA 90 (265)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence 5688999986 999999999999999999999999888777766666432 23555554444332 489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
|+++|.
T Consensus 91 i~~Ag~ 96 (265)
T 2o23_A 91 VNCAGI 96 (265)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999873
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.001 Score=57.78 Aligned_cols=75 Identities=25% Similarity=0.304 Sum_probs=56.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhc-------CCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~-------~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++... ...|..+.+.+.++. +++|++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l 85 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL 85 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4688999986 99999999999999999999999998877765555422 223555554444332 489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 86 v~~Ag~ 91 (260)
T 1nff_A 86 VNNAGI 91 (260)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999873
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00092 Score=58.78 Aligned_cols=102 Identities=14% Similarity=0.008 Sum_probs=70.1
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC---cEEecCCCHHHHHHhcCC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA---DAFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~ 247 (359)
..+|+..+.--.+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++. -.+.... ++...
T Consensus 114 ~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~------~l~~~ 187 (281)
T 3o8q_A 114 VQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE------QLKQS 187 (281)
T ss_dssp HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG------GCCSC
T ss_pred HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH------HhcCC
Confidence 3445444432468899999999999999999989997 999999999998877676653 1233221 22258
Q ss_pred ccEEEECCCChhhHHH----HHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAVHSLAP----LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~----~~~~l~~~G~~v~~g~~ 280 (359)
+|+||++++... ... -...++++..++++...
T Consensus 188 aDiIInaTp~gm-~~~~~~l~~~~l~~~~~V~DlvY~ 223 (281)
T 3o8q_A 188 YDVIINSTSASL-DGELPAIDPVIFSSRSVCYDMMYG 223 (281)
T ss_dssp EEEEEECSCCCC-----CSCCGGGEEEEEEEEESCCC
T ss_pred CCEEEEcCcCCC-CCCCCCCCHHHhCcCCEEEEecCC
Confidence 999999997653 111 12456666667777554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00083 Score=57.25 Aligned_cols=101 Identities=13% Similarity=0.180 Sum_probs=69.9
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcC----CcEEecC-CCHHHHHHhcCC
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLG----ADAFLVS-SDPAKVKAAMGT 247 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g----~~~v~~~-~~~~~~~~~~~~ 247 (359)
+.... ++||++||-+|+|. |..+..+|+..|- +|++++.+++..+.+.+... ...+... ...+........
T Consensus 70 l~~l~-ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 70 LIELP-VKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CSCCC-CCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred hhhcC-CCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence 33444 49999999999865 7788899998875 89999999998887744432 2333322 222222223347
Q ss_pred ccEEEECCCCh----hhHHHHHhccccCCEEEEe
Q 018246 248 MDYIIDTVSAV----HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 248 ~d~vid~~g~~----~~~~~~~~~l~~~G~~v~~ 277 (359)
+|+|+.....+ ..+..+.+.|+|+|+++.+
T Consensus 148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence 89988655543 2467788899999999875
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00065 Score=64.01 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=73.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|.+|.|+|.|.+|..+++.++.+|++|+++++++.+...+ ...|+.. . .+.++....|+|+.+.+....+
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-~~~g~~~-~------~l~ell~~aDiVi~~~~t~~lI 326 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-VMEGFNV-V------TLDEIVDKGDFFITCTGNVDVI 326 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-HTTTCEE-C------CHHHHTTTCSEEEECCSSSSSB
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-HHcCCEe-c------CHHHHHhcCCEEEECCChhhhc
Confidence 578999999999999999999999999999999998775444 3556532 1 2455667899999998766544
Q ss_pred -HHHHhccccCCEEEEecCC
Q 018246 262 -APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 262 -~~~~~~l~~~G~~v~~g~~ 280 (359)
...+..|+++..++.+|..
T Consensus 327 ~~~~l~~MK~gailiNvgrg 346 (479)
T 1v8b_A 327 KLEHLLKMKNNAVVGNIGHF 346 (479)
T ss_dssp CHHHHTTCCTTCEEEECSST
T ss_pred CHHHHhhcCCCcEEEEeCCC
Confidence 4778899999999999754
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00073 Score=59.77 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhc---CCccEEEEC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAM---GTMDYIIDT 254 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~---~~~d~vid~ 254 (359)
-.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.. ...|-.+.+.+.++. +++|+++++
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~n 93 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINN 93 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEEC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 36789999986 99999999999999999999999999988886666532 223556665555544 478999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 94 Ag~ 96 (291)
T 3rd5_A 94 AGI 96 (291)
T ss_dssp CCC
T ss_pred CcC
Confidence 884
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.001 Score=57.17 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=66.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh--hHHHHHHHcCCcE---EecCCCHHHHHHhc--CCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK--KESEAISKLGADA---FLVSSDPAKVKAAM--GTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~--~~~~~~~~~g~~~---v~~~~~~~~~~~~~--~~~d~vid~ 254 (359)
.|+++||.|+ +++|++.++.+...|++|++++++.+ ..+.+ ++.|.+. ..|-.+.+.++.+. +++|+.+++
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~-~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNN 86 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDII-AKDGGNASALLIDFADPLAAKDSFTDAGFDILVNN 86 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHH-HHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEEC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHH-HHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 5889999886 99999999999999999999998753 23444 6666442 23444443333333 379999999
Q ss_pred CCCh-------------------------hhHHHHHhcc-c--cCCEEEEecCCC
Q 018246 255 VSAV-------------------------HSLAPLLGLL-K--VNGKLVTVGLPE 281 (359)
Q Consensus 255 ~g~~-------------------------~~~~~~~~~l-~--~~G~~v~~g~~~ 281 (359)
+|.. ...+.++..| + .+|++|.+++..
T Consensus 87 AGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~ 141 (247)
T 4hp8_A 87 AGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLL 141 (247)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred CCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechh
Confidence 9852 1123345545 3 368999997644
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0018 Score=57.40 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=67.7
Q ss_pred CCCCEEEEECC-ch--HHHHHHHHHHHCCCeEEEEeCChhhH---HHHHHHcCCcE--EecCCCHHHHHHh-------cC
Q 018246 182 EPGKHLGVAGL-GG--LGHVAVKIGKAFGLKVTVISTSPKKE---SEAISKLGADA--FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 182 ~~g~~VlI~G~-g~--vG~~a~~la~~~g~~V~~v~~~~~~~---~~~~~~~g~~~--v~~~~~~~~~~~~-------~~ 246 (359)
-.|+++||.|+ |. +|.++++.+...|++|++++++++.. +.+.++.+... ..|-.+.+.+.++ .+
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG 108 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 35789999986 55 99999999999999999999986432 33333445322 2355555444433 24
Q ss_pred CccEEEECCCChh-----------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAVH-----------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++|++++++|... ..+.++..|+.+|++|.++...
T Consensus 109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~ 172 (293)
T 3grk_A 109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG 172 (293)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence 8999999988421 1234555667789999987644
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=57.11 Aligned_cols=75 Identities=28% Similarity=0.310 Sum_probs=55.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +... ..|..+.+.+.++ .++
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 99 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK 99 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5788999986 99999999999999999999999988776654443 5332 2355555444333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 100 iD~lvnnAg~ 109 (267)
T 1vl8_A 100 LDTVVNAAGI 109 (267)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999999874
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=56.55 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=65.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.++++.+...|++|+++ .+++++.+...+ +.+.. ...|-.+.+.+.++ .++
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE 86 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 5789999986 999999999999999999998 555555444323 33432 22355555444333 248
Q ss_pred ccEEEECCCCh--------------------------hhHHHHHhccccCCEEEEecC
Q 018246 248 MDYIIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 248 ~d~vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+|++++++|.. ...+.+...|+++|++|.++.
T Consensus 87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS 144 (259)
T 3edm_A 87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSS 144 (259)
T ss_dssp EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 99999998732 112344556666899999865
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=57.78 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=54.2
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---C-Cc---EEecCCCH-HHHHHh-------c
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---G-AD---AFLVSSDP-AKVKAA-------M 245 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g-~~---~v~~~~~~-~~~~~~-------~ 245 (359)
..++++||.|+ |++|.++++.+...|++|++++|++++.+.+.+++ + .. ...|..+. +.+..+ .
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 35788999986 99999999999999999999999998876654443 2 11 22354443 333322 3
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++|+++|.
T Consensus 90 g~iD~lv~nAg~ 101 (311)
T 3o26_A 90 GKLDILVNNAGV 101 (311)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 589999999984
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0017 Score=56.80 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------c-CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------M-GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~-~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++ .+.. ...|..+.+.+.++ . ++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~ 99 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK 99 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5788999986 9999999999999999999999998876655333 2432 22355555444333 2 67
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 100 id~lv~nAg~ 109 (273)
T 1ae1_A 100 LNILVNNAGV 109 (273)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 9999999874
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=57.08 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=55.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCcE---EecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GADA---FLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+++ +... ..|..+.+.+.++. ++
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG 85 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 99999999999999999999999988776553433 5321 23555554444332 48
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 86 id~lv~~Ag~ 95 (263)
T 3ai3_A 86 ADILVNNAGT 95 (263)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00072 Score=59.02 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=54.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++ .+.+. ..|-.+.+.+.++ .++
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 98 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGG 98 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5788999986 9999999999999999999999998887665443 34322 2344444333322 358
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 99 id~lv~nAg~ 108 (266)
T 4egf_A 99 LDVLVNNAGI 108 (266)
T ss_dssp CSEEEEECCC
T ss_pred CCEEEECCCc
Confidence 9999999874
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0013 Score=57.26 Aligned_cols=75 Identities=28% Similarity=0.332 Sum_probs=53.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHH---HcCCc---EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAIS---KLGAD---AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~-------~~ 247 (359)
.+++|||.|+ |++|...++.+...|++|+++++ ++++.+.+.+ +.+.. ...|..+.+.+.++. ++
T Consensus 20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 99 (274)
T 1ja9_A 20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG 99 (274)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 99999999999999999999998 6666544423 33533 223555554444332 48
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 100 ~d~vi~~Ag~ 109 (274)
T 1ja9_A 100 LDFVMSNSGM 109 (274)
T ss_dssp EEEEECCCCC
T ss_pred CCEEEECCCC
Confidence 9999998873
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=56.96 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC--Cc-EEecCCCHHHHHHhc-------CCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG--AD-AFLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g--~~-~v~~~~~~~~~~~~~-------~~~d~v 251 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++. .. ...|..+.+.+.++. +++|++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l 90 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL 90 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4688999986 999999999999999999999999988777655553 22 224555554444332 489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 91 v~~Ag~ 96 (263)
T 3ak4_A 91 CANAGV 96 (263)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 999873
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=58.19 Aligned_cols=75 Identities=25% Similarity=0.270 Sum_probs=58.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|.++++.+...|++|+++++++++.+.+.++++... ..|-.+.+.+.++ .+++|++
T Consensus 4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 83 (281)
T 3zv4_A 4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL 83 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 4789999986 999999999999999999999999999888866766432 2355555433332 2589999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 84 vnnAg~ 89 (281)
T 3zv4_A 84 IPNAGI 89 (281)
T ss_dssp ECCCCC
T ss_pred EECCCc
Confidence 999874
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0019 Score=56.05 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=67.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH--HHHcCCc---EEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA--ISKLGAD---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~--~~~~g~~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++.+.+ .++.+.+ ...|-.+.+.++++ .++.|
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD 85 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD 85 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 6889999986 9999999999999999999999987754332 1334422 23455565443333 25899
Q ss_pred EEEECCCCh------------------------hhHHHHHhccc-cCCEEEEecCCC
Q 018246 250 YIIDTVSAV------------------------HSLAPLLGLLK-VNGKLVTVGLPE 281 (359)
Q Consensus 250 ~vid~~g~~------------------------~~~~~~~~~l~-~~G~~v~~g~~~ 281 (359)
++++++|.. ...+.++..|+ .+|++|.+++..
T Consensus 86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~ 142 (258)
T 4gkb_A 86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT 142 (258)
T ss_dssp EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence 999999842 11233445553 479999997644
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0018 Score=56.17 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhc--------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAM--------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~--------~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++. ++
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~ 87 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK 87 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4788999986 99999999999999999999999988776553433 432 123555554443332 57
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 88 id~lv~~Ag~ 97 (260)
T 2ae2_A 88 LNILVNNAGI 97 (260)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999883
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0024 Score=54.65 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=56.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-CCcE-EecCCCHHHHHHhcC---CccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-GADA-FLVSSDPAKVKAAMG---TMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-g~~~-v~~~~~~~~~~~~~~---~~d~vid~~g 256 (359)
.+.++||.|+ |.+|...++.+...|++|+++++++++.+.+.++. +... ..|..+.+.+.++.. ++|++++++|
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag 85 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA 85 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCc
Confidence 5678999986 99999999999999999999999988877664544 3322 235566655555543 6899999988
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00069 Score=58.75 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=49.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+...++++.. ...|-.+.+.+.++ .+++|++
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 85 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL 85 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5789999986 99999999999999999999999998877775666532 22355555443333 2489999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 86 v~nAg~ 91 (257)
T 3tpc_A 86 VNCAGT 91 (257)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999884
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0021 Score=55.36 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=55.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-hhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-KKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++ ++.+..+++.+... ..|..+.+.+.++ .+++|+
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 85 (249)
T 2ew8_A 6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI 85 (249)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence 4678999986 9999999999999999999999988 66654435566432 2355555444433 258999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
+++++|.
T Consensus 86 lv~nAg~ 92 (249)
T 2ew8_A 86 LVNNAGI 92 (249)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999874
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.002 Score=56.14 Aligned_cols=88 Identities=24% Similarity=0.266 Sum_probs=66.6
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh----
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH---- 259 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---- 259 (359)
+++++|+|+|++|.+++..+...|.+|+++.|+.++.+.+. +++... ....+ +. .+|+||+|++...
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~-~~~~~------l~-~~DiVInaTp~Gm~~~~ 188 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDC-FMEPP------KS-AFDLIINATSASLHNEL 188 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEE-ESSCC------SS-CCSEEEECCTTCCCCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeE-ecHHH------hc-cCCEEEEcccCCCCCCC
Confidence 88999999999999999999999999999999999998886 788543 33332 11 7999999987431
Q ss_pred hH--HHHHhccccCCEEEEecCC
Q 018246 260 SL--APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 ~~--~~~~~~l~~~G~~v~~g~~ 280 (359)
.+ ..+...++++..++++...
T Consensus 189 ~l~~~~l~~~l~~~~~v~D~vY~ 211 (269)
T 3phh_A 189 PLNKEVLKGYFKEGKLAYDLAYG 211 (269)
T ss_dssp SSCHHHHHHHHHHCSEEEESCCS
T ss_pred CCChHHHHhhCCCCCEEEEeCCC
Confidence 12 2223367788888888654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00018 Score=60.12 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=78.2
Q ss_pred ccceEEE-eeCCceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEe
Q 018246 137 GYSDLIV-VDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVIS 214 (359)
Q Consensus 137 ~~a~~~~-~~~~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~ 214 (359)
.|.+|.. .+....+.+++++.+..+.. +.. ......+... ++++++||-+|+|. |..+..+++ .+. +|++++
T Consensus 17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~-~~~~~~l~~~--~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD 90 (205)
T 3grz_A 17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-QTT-QLAMLGIERA--MVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD 90 (205)
T ss_dssp TTCCCCCSSTTCEEEEESCC-----CCH-HHH-HHHHHHHHHH--CSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred cccccccCCCCceeEEecCCcccCCCCC-ccH-HHHHHHHHHh--ccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence 4666666 66677788888776665421 111 1112222222 36789999999876 677777776 465 999999
Q ss_pred CChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEECCCChh---hHHHHHhccccCCEEEEec
Q 018246 215 TSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYIIDTVSAVH---SLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 215 ~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~~~~~~~l~~~G~~v~~g 278 (359)
.+++..+.+.+. .+.. .++..+-. ....+.+|+|+....... .+..+.+.|+++|+++...
T Consensus 91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 91 ISDESMTAAEENAALNGIYDIALQKTSLL---ADVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp SCHHHHHHHHHHHHHTTCCCCEEEESSTT---TTCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEecccc---ccCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999887777433 2422 22222211 112358999997655433 2455667889999998853
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.005 Score=54.46 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=67.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh--hHHHH---HHHcCCcEE---ecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK--KESEA---ISKLGADAF---LVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~--~~~~~---~~~~g~~~v---~~~~~~~~~~~~-------~~ 246 (359)
.|+++||.|+ |++|.+.++.+...|++|++++++.+ +.+.+ .++.|.... .|..+.+.+.++ .+
T Consensus 48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 127 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG 127 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5789999986 99999999999999999999988732 22222 234554322 244444433332 25
Q ss_pred CccEEEECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++|+++++.|.. ...+.++..++.+|++|.++...
T Consensus 128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~ 188 (294)
T 3r3s_A 128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQ 188 (294)
T ss_dssp CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGG
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChh
Confidence 899999998841 12234556777789999997644
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0018 Score=56.41 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=55.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCcE---EecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GADA---FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ +... ..|..+.+.+.++ .+
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 91 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 91 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4688999986 99999999999999999999999988776553332 4321 2355555444433 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 92 ~id~lv~nAg~ 102 (267)
T 1iy8_A 92 RIDGFFNNAGI 102 (267)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999999873
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=55.64 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=56.3
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCcE---EecCCCHHHHHHhc-------CCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGADA---FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~-------~~~ 248 (359)
++++||.|+ |++|...++.+...|++|++++++.++.+.+.++ .+... ..|-.+.+.+.++. +++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV 81 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 578999986 9999999999999999999999999887665443 34332 23566666555543 379
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 82 d~li~~Ag~ 90 (235)
T 3l77_A 82 DVVVANAGL 90 (235)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999999874
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=56.86 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=74.4
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||........++....--.|++++|+|.| .+|..++.++...|++|++..+....
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~--------------------- 197 (286)
T 4a5o_A 139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRD--------------------- 197 (286)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSC---------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcC---------------------
Confidence 45677777777778777654689999999974 59999999999999999998754322
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+++.++|.+..+. -..++++..++++|...
T Consensus 198 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 198 LADHVSRADLVVVAAGKPGLVK--GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp HHHHHHTCSEEEECCCCTTCBC--GGGSCTTCEEEECCSCS
T ss_pred HHHHhccCCEEEECCCCCCCCC--HHHcCCCeEEEEecccc
Confidence 2233446899999999876443 35679999999998764
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0014 Score=56.80 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=72.8
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+.......++..+ -.|++++|+|.| .+|..++.++...|++|++..+....++
T Consensus 130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~------------------- 188 (276)
T 3ngx_A 130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG------------------- 188 (276)
T ss_dssp SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------
T ss_pred CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------
Confidence 356777777777787777 579999999985 6899999999999999999876433332
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.....|++|.++|.+..+.. ..++++..++++|...
T Consensus 189 --~~~~~ADIVI~Avg~p~~I~~--~~vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 189 --SMTRSSKIVVVAVGRPGFLNR--EMVTPGSVVIDVGINY 225 (276)
T ss_dssp --HHHHHSSEEEECSSCTTCBCG--GGCCTTCEEEECCCEE
T ss_pred --HhhccCCEEEECCCCCccccH--hhccCCcEEEEeccCc
Confidence 223357999999998764433 5679999999998754
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00096 Score=59.55 Aligned_cols=89 Identities=22% Similarity=0.403 Sum_probs=68.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
-.|.+|.|+|.|.+|...++.++..|.+|++.++++++ +.+ .+.|++.. + +.++....|+|+.++....
T Consensus 140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~~----~---l~ell~~aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 140 LEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERA-KEVNGKFV----D---LETLLKESDVVTIHVPLVEST 210 (307)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHTTCEEC----C---HHHHHHHCSEEEECCCCSTTT
T ss_pred cCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH-hhcCcccc----C---HHHHHhhCCEEEEecCCChHH
Confidence 36889999999999999999999999999999998876 444 67776432 2 2333446899999887422
Q ss_pred --hH-HHHHhccccCCEEEEecC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|++++.++.++.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSC
T ss_pred hhhcCHHHHhcCCCCeEEEECCC
Confidence 22 457788999999999865
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.003 Score=58.73 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=72.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChhh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVHS 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~ 260 (359)
.+.+|+|+|.|.+|..+++.++..|.+|++++.++++.+.+ ++.|...++ |..+.+.+..+. ..+|+|+-+++....
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 81 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence 34679999999999999999999999999999999999888 778876443 455566666653 589999999997652
Q ss_pred ---HHHHHhccccCCEEEEec
Q 018246 261 ---LAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 261 ---~~~~~~~l~~~G~~v~~g 278 (359)
+-...+.+.|.-+++.-.
T Consensus 82 n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 82 NLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp HHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEE
Confidence 234455666776776653
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=57.19 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCch-HHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~-vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||....+...++....--.|++++|+|.|. +|..++.++...|++|++..+....
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~--------------------- 197 (285)
T 3l07_A 139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD--------------------- 197 (285)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---------------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh---------------------
Confidence 456777777777777776546899999999755 8999999999999999888654222
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+|+.++|.+..+. -..++++..++++|...
T Consensus 198 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~~ 236 (285)
T 3l07_A 198 LKSHTTKADILIVAVGKPNFIT--ADMVKEGAVVIDVGINH 236 (285)
T ss_dssp HHHHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCEE
T ss_pred HHHhcccCCEEEECCCCCCCCC--HHHcCCCcEEEEecccC
Confidence 3344567899999999876333 35679999999998754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0023 Score=53.65 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=64.0
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCCh-----
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAV----- 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~----- 258 (359)
+|||+|+ |.+|..+++.+...|.+|++++|++++.+.+ . -+...+ .|..+.+. +...++|+||.++|..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~-~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-H-KDINILQKDIFDLTL--SDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-C-SSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-c-CCCeEEeccccChhh--hhhcCCCEEEECCcCCccccc
Confidence 5899986 9999999999999999999999998887655 2 344332 23322222 4456899999999863
Q ss_pred ---hhHHHHHhccccC--CEEEEecCC
Q 018246 259 ---HSLAPLLGLLKVN--GKLVTVGLP 280 (359)
Q Consensus 259 ---~~~~~~~~~l~~~--G~~v~~g~~ 280 (359)
.....+++.++.. ++++.++..
T Consensus 78 ~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp SHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 1234555666553 688888654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0021 Score=55.27 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC----Cc-EEecCCCHHHHHHhc-------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG----AD-AFLVSSDPAKVKAAM-------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g----~~-~v~~~~~~~~~~~~~-------~~~d 249 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+...+++. .. ...|..+.+.+.++. +.+|
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS 84 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4678999986 999999999999999999999999887776645443 11 123555554443332 4799
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|+++|.
T Consensus 85 ~li~~Ag~ 92 (251)
T 1zk4_A 85 TLVNNAGI 92 (251)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00061 Score=60.00 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=69.7
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC-----c-EEecCCCHHHHHHh
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA-----D-AFLVSSDPAKVKAA 244 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~-----~-~v~~~~~~~~~~~~ 244 (359)
..+++....--.+++++|+|+|++|.+++..+...|+ +|++++|+.++.+.+.++++. . ..++.++ +.+.
T Consensus 115 ~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~ 191 (283)
T 3jyo_A 115 GRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDV 191 (283)
T ss_dssp HHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHH
T ss_pred HHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHH
Confidence 3445444332468899999999999999999999999 799999999988777565541 1 1222222 2333
Q ss_pred cCCccEEEECCCChhh----HHHHHhccccCCEEEEecCC
Q 018246 245 MGTMDYIIDTVSAVHS----LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 245 ~~~~d~vid~~g~~~~----~~~~~~~l~~~G~~v~~g~~ 280 (359)
...+|+|++|++.... .......++++..++++-..
T Consensus 192 l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~ 231 (283)
T 3jyo_A 192 IAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYM 231 (283)
T ss_dssp HHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCS
T ss_pred HhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCC
Confidence 3468999999874320 01123456676666666543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=55.84 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHH---cCC---cEEecCCCHHHHHHh--cCCccEEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISK---LGA---DAFLVSSDPAKVKAA--MGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~---~g~---~~v~~~~~~~~~~~~--~~~~d~vi 252 (359)
.++++||.+|+| .|..+..+++.. +.+|++++.+++..+.+.+. .|. -.++..+..+.+... .+.||+|+
T Consensus 53 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 53 AAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred cCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 577899999988 688888999987 57999999999988777443 243 122322222323344 35799998
Q ss_pred ECCCC---hhhHHHHHhccccCCEEEEec
Q 018246 253 DTVSA---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
..... ...+..+.+.|+++|+++...
T Consensus 132 ~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 132 IDAAKGQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred ECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 76553 345688999999999998863
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00086 Score=56.05 Aligned_cols=97 Identities=18% Similarity=0.065 Sum_probs=67.7
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEEC
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
.++++++||-+|+| .|..+..+++. +.+|++++.+++..+.+.+. .|.. .++..+..+.. ...+.||+|+..
T Consensus 74 ~~~~~~~vLdiG~G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~ 150 (210)
T 3lbf_A 74 ELTPQSRVLEIGTG-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVT 150 (210)
T ss_dssp TCCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEES
T ss_pred CCCCCCEEEEEcCC-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEc
Confidence 34889999999987 47888888887 78999999999888777443 2432 22222111111 113479999987
Q ss_pred CCChhhHHHHHhccccCCEEEEecC
Q 018246 255 VSAVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 255 ~g~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
..-....+.+.+.|+++|+++..-.
T Consensus 151 ~~~~~~~~~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 151 AAPPEIPTALMTQLDEGGILVLPVG 175 (210)
T ss_dssp SBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred cchhhhhHHHHHhcccCcEEEEEEc
Confidence 6655545678999999999987633
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00083 Score=56.38 Aligned_cols=98 Identities=26% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+.++++||.+|+| .|..+..+++..| .+|++++.+++..+.+.+. .+.. .++..+..... ...+.+|+|+
T Consensus 74 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~ 151 (215)
T 2yxe_A 74 DLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIY 151 (215)
T ss_dssp TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEE
T ss_pred CCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEE
Confidence 44889999999998 4888889998876 6999999999887777433 2322 22211111110 1124799999
Q ss_pred ECCCChhhHHHHHhccccCCEEEEecC
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.+.......+.+.+.|+++|+++..-.
T Consensus 152 ~~~~~~~~~~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 152 TTAAGPKIPEPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp ESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred ECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence 887766656788999999999987643
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=56.89 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=56.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC---Cc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG---AD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g---~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++. .. ...|-.+.+.+.++ .+++
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 84 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI 84 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4688999986 999999999999999999999999988877755542 22 22355555444333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 85 d~lv~nAg~ 93 (257)
T 3imf_A 85 DILINNAAG 93 (257)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999983
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0015 Score=61.51 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=67.0
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-c-EEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-D-AFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+.+|+|+|+|.+|..+++.+...|++|+++++++++.+.+.++++. . ..++..+.+.+.++..++|+|+++++.....
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~ 82 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 82 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence 5689999999999999998888899999999998887666444542 1 1235555555666667899999999864312
Q ss_pred HHHHhccccCCEEEEec
Q 018246 262 APLLGLLKVNGKLVTVG 278 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g 278 (359)
.....++.++..++...
T Consensus 83 ~i~~a~l~~g~~vvd~~ 99 (450)
T 1ff9_A 83 TVIKSAIRQKKHVVTTS 99 (450)
T ss_dssp HHHHHHHHHTCEEEESS
T ss_pred HHHHHHHhCCCeEEEee
Confidence 33445667766666653
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0025 Score=55.81 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=53.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHhc------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAAM------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~------~~~d 249 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +... ..|..+.+.+..+. +++|
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD 111 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVD 111 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence 5789999986 99999999999999999999999988766554433 4322 22434432222221 5899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 112 ~lvnnAg~ 119 (275)
T 4imr_A 112 ILVINASA 119 (275)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999984
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0047 Score=53.87 Aligned_cols=99 Identities=21% Similarity=0.251 Sum_probs=67.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC-hhhHHHHH---HHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-PKKESEAI---SKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-~~~~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.++++.+...|++|++++++ +++.+.+. +..|.+. ..|..+.+.+.++ .++
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 96 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH 96 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999986 999999999999999999997754 44333332 3345332 2355555444333 248
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|++++++|.. ...+.++..|..+|++|.++...
T Consensus 97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 155 (270)
T 3is3_A 97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT 155 (270)
T ss_dssp CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence 99999998842 12345666777899999997654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=56.17 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHHcCCc--EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSP---KKESEAISKLGAD--AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++ +..+.+.+..+.. ...|..+.+.+.++. ++
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK 87 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678999874 6999999999999999999999887 3344443333432 223556654444332 37
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 88 iD~lv~~Ag~ 97 (265)
T 1qsg_A 88 FDGFVHSIGF 97 (265)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=56.96 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE--EecCCCHHHHHHh-------cCCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA--FLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++.... ..|..+.+.+.++ .+++|+++
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 87 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV 87 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 5788999986 999999999999999999999999988777655554222 2355555444333 24899999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|.
T Consensus 88 ~nAg~ 92 (270)
T 1yde_A 88 NNAGH 92 (270)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99873
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=56.62 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=54.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHhcC------C
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAAMG------T 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~~~------~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++.. +
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG 85 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4678999986 99999999999999999999999988776654443 312 1235566554443321 4
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 86 id~lv~~Ag~ 95 (260)
T 2z1n_A 86 ADILVYSTGG 95 (260)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999983
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0022 Score=55.13 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=55.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ |.. ...|..+.+.+.++ .+++
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 85 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL 85 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 99999999999999999999999988776654433 432 12355555444333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 86 d~lv~nAg~ 94 (247)
T 2jah_A 86 DILVNNAGI 94 (247)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=56.71 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=55.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++ .+++
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 100 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 100 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999986 99999999999999999999999988766553333 432 12355555443333 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 101 D~lv~~Ag~ 109 (277)
T 2rhc_B 101 DVLVNNAGR 109 (277)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0013 Score=56.86 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhc------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAM------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~------~~~d 249 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ |.. ...|-.+.+.+.++. +++|
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id 85 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLE 85 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCce
Confidence 5788999986 99999999999999999999999998876664443 432 223555554433322 5899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 86 ~lv~nAg~ 93 (252)
T 3h7a_A 86 VTIFNVGA 93 (252)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999984
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0027 Score=55.74 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-------------ChhhHHHHHH---HcCCc---EEecCCCHHHH
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-------------SPKKESEAIS---KLGAD---AFLVSSDPAKV 241 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-------------~~~~~~~~~~---~~g~~---~v~~~~~~~~~ 241 (359)
-.|+++||.|+ |++|.++++.+...|++|+++++ ++++.+.+.+ +.|.. ...|-.+.+.+
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL 92 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 36789999986 99999999999999999999987 5555554433 33432 22355665444
Q ss_pred HHh-------cCCccEEEECCCC
Q 018246 242 KAA-------MGTMDYIIDTVSA 257 (359)
Q Consensus 242 ~~~-------~~~~d~vid~~g~ 257 (359)
.++ .+++|++++++|.
T Consensus 93 ~~~~~~~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 93 RELVADGMEQFGRLDVVVANAGV 115 (280)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 433 2489999999884
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=57.16 Aligned_cols=99 Identities=22% Similarity=0.321 Sum_probs=65.8
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEe-CChhhHHHHH---HHcCCcE---EecCCCHHHHHHh-------cC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAI---SKLGADA---FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~ 246 (359)
..++++||.|+ |++|.++++.+...|++|++++ +++++.+.+. +..+... ..|..+.+.+.++ .+
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35789999986 9999999998888899999874 4554444432 2344332 2355665444433 24
Q ss_pred CccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCC
Q 018246 247 TMDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 247 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
++|++++++|.. ..++.+...|+.+|++|.++..
T Consensus 105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~ 163 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS 163 (267)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence 899999999742 1133455667778999998754
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00013 Score=64.90 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=79.6
Q ss_pred ccccchhhhhhhHhHh---------cCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-
Q 018246 162 APLLCAGITVYSPMKY---------YGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD- 230 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~---------~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~- 230 (359)
..+||....+...++. .+.--.|.+++|+|+| .+|..+++++...|++|++.+++..+.....+.++..
T Consensus 146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~ 225 (320)
T 1edz_A 146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK 225 (320)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC
T ss_pred CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc
Confidence 4667777777777776 3422478999999998 5699999999999999999988744321111223321
Q ss_pred EEe---cCCCHHHHHHhcCCccEEEECCCChhh-HHHHHhccccCCEEEEecCCC
Q 018246 231 AFL---VSSDPAKVKAAMGTMDYIIDTVSAVHS-LAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 231 ~v~---~~~~~~~~~~~~~~~d~vid~~g~~~~-~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.. ...+.+.+.+....+|+||.++|.+.. +.. ..++++..++++|...
T Consensus 226 ~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~--e~vk~GavVIDVgi~r 278 (320)
T 1edz_A 226 HHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPT--EYIKEGAVCINFACTK 278 (320)
T ss_dssp CEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCT--TTSCTTEEEEECSSSC
T ss_pred ccccccccccHhHHHHHhccCCEEEECCCCCcceeCH--HHcCCCeEEEEcCCCc
Confidence 100 001124566666789999999998762 332 3478888889998764
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0013 Score=57.26 Aligned_cols=96 Identities=23% Similarity=0.266 Sum_probs=74.0
Q ss_pred cccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHH
Q 018246 163 PLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKV 241 (359)
Q Consensus 163 ~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 241 (359)
.+||....+...++....--.|++++|+|.| .+|..++.++...|++|++..+.... +
T Consensus 139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~---------------------L 197 (285)
T 3p2o_A 139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD---------------------L 197 (285)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC---------------------H
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchh---------------------H
Confidence 4677777777777777654689999999975 58999999999999999998764322 2
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+.....|+++.++|.+..+. -..++++..++++|...
T Consensus 198 ~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~~ 235 (285)
T 3p2o_A 198 SLYTRQADLIIVAAGCVNLLR--SDMVKEGVIVVDVGINR 235 (285)
T ss_dssp HHHHTTCSEEEECSSCTTCBC--GGGSCTTEEEEECCCEE
T ss_pred HHHhhcCCEEEECCCCCCcCC--HHHcCCCeEEEEeccCc
Confidence 344567899999999876333 35679999999998753
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00081 Score=58.96 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=67.3
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
..+++..+.--.+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.+ .. ... ..+.+.+....+|+
T Consensus 105 ~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~--~~-~~~---~~~~~~~~~~~aDi 178 (277)
T 3don_A 105 VNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL--NI-NKI---NLSHAESHLDEFDI 178 (277)
T ss_dssp HHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS--CC-EEE---CHHHHHHTGGGCSE
T ss_pred HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH--hc-ccc---cHhhHHHHhcCCCE
Confidence 3445544432367899999999999999999999999 99999999988655421 11 111 12334444568999
Q ss_pred EEECCCChhhHHH-----HHhccccCCEEEEecCC
Q 018246 251 IIDTVSAVHSLAP-----LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 251 vid~~g~~~~~~~-----~~~~l~~~G~~v~~g~~ 280 (359)
||++++... ... ....++++..++++...
T Consensus 179 VInaTp~Gm-~~~~~~~l~~~~l~~~~~V~D~vY~ 212 (277)
T 3don_A 179 IINTTPAGM-NGNTDSVISLNRLASHTLVSDIVYN 212 (277)
T ss_dssp EEECCC--------CCSSCCTTCCSSCEEEESCCS
T ss_pred EEECccCCC-CCCCcCCCCHHHcCCCCEEEEecCC
Confidence 999987542 111 23457777788888654
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00063 Score=57.56 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=66.4
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.+|||+|+ |.+|...++.+...|.+|++++|++++.+.+ .-+... ..|..+.+.+.++..++|+||.+++...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~ 82 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNP 82 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-----
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCCh
Confidence 57999986 9999999999999999999999998765322 112222 2355566777777789999999998641
Q ss_pred --------hHHHHHhccccC--CEEEEecCCC
Q 018246 260 --------SLAPLLGLLKVN--GKLVTVGLPE 281 (359)
Q Consensus 260 --------~~~~~~~~l~~~--G~~v~~g~~~ 281 (359)
....+++.++.. ++++.++...
T Consensus 83 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~ 114 (227)
T 3dhn_A 83 DIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG 114 (227)
T ss_dssp -CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence 123444555443 4888887644
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=57.51 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=74.1
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+.......++....--.|.+++|+|.| .+|.-++.++...|++|++..+....
T Consensus 143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~--------------------- 201 (301)
T 1a4i_A 143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH--------------------- 201 (301)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---------------------
T ss_pred CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCccc---------------------
Confidence 45677766667777776644589999999997 58999999999999999998754322
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+||.++|.+..+. -..++++..++++|...
T Consensus 202 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 202 LDEEVNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp HHHHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCBC
T ss_pred HHHHhccCCEEEECCCCcccCC--HHHcCCCcEEEEccCCC
Confidence 3344567899999999986333 34578999999998753
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0016 Score=57.09 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.++ .+.. ...|..+.+.+.++. +++
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 110 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI 110 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 9999999999999999999999998876665443 3322 223556654444332 489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 111 D~lvnnAg~ 119 (276)
T 3r1i_A 111 DIAVCNAGI 119 (276)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999884
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0016 Score=55.13 Aligned_cols=98 Identities=19% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC------CeEEEEeCChhhHHHHHHH---cC-------CcEEecCCCHHHHH-
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG------LKVTVISTSPKKESEAISK---LG-------ADAFLVSSDPAKVK- 242 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g------~~V~~v~~~~~~~~~~~~~---~g-------~~~v~~~~~~~~~~- 242 (359)
.++++++||.+|+|. |..+..+++..+ .+|++++.+++..+.+.+. .+ .-.++..+..+...
T Consensus 77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (227)
T 2pbf_A 77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE 155 (227)
T ss_dssp TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence 457899999999876 888889998876 5999999999887777433 22 11222222111110
Q ss_pred --HhcCCccEEEECCCChhhHHHHHhccccCCEEEEec
Q 018246 243 --AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 243 --~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
.....||+|+........+..+.+.|+++|+++..-
T Consensus 156 ~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence 123579999987776666789999999999998763
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0017 Score=57.07 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=74.0
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||....+...++....--.|.+++|+|.| .+|..++.++...|++|++..+....++
T Consensus 143 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~------------------- 203 (300)
T 4a26_A 143 PFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED------------------- 203 (300)
T ss_dssp SCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------
Confidence 35677777777778777654689999999975 5899999999999999999886433222
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+.+.....|+||.++|.+..+. -..++++..++++|..
T Consensus 204 l~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~ 241 (300)
T 4a26_A 204 MIDYLRTADIVIAAMGQPGYVK--GEWIKEGAAVVDVGTT 241 (300)
T ss_dssp HHHHHHTCSEEEECSCCTTCBC--GGGSCTTCEEEECCCE
T ss_pred hhhhhccCCEEEECCCCCCCCc--HHhcCCCcEEEEEecc
Confidence 1133446899999999876443 2567999999999864
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0026 Score=55.68 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCChh---hHHHHHHHcC-Cc-EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSPK---KESEAISKLG-AD-AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~~---~~~~~~~~~g-~~-~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|++++++++ ..+.+.++.+ .. ...|..+.+.+.++ .++
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 84 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS 84 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999974 79999999999999999999999875 3444433344 22 22455655444333 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 85 id~lv~nAg~ 94 (275)
T 2pd4_A 85 LDFIVHSVAF 94 (275)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999999873
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0027 Score=55.10 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCChh---hHHHHHHHcCCcE--EecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSPK---KESEAISKLGADA--FLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~~---~~~~~~~~~g~~~--v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|++++++++ ..+.+.++.+... ..|..+.+.+.++. ++
T Consensus 7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (261)
T 2wyu_A 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG 86 (261)
T ss_dssp TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999985 69999999888888999999999875 3444433344322 23555554444332 48
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 87 iD~lv~~Ag~ 96 (261)
T 2wyu_A 87 LDYLVHAIAF 96 (261)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0055 Score=51.57 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=66.4
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEECCCChhhHH-
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAA-MGTMDYIIDTVSAVHSLA- 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~~~~- 262 (359)
+|+|+|+|.+|...++.+...|.+|+++++++++.+.+.++.+...+. |..+.+.+.+. ...+|+++-+++... .+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~-~n~ 80 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE-VNL 80 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH-HHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH-HHH
Confidence 488999999999999999999999999999999988875566765443 34555556555 358999999999875 32
Q ss_pred ---HHHhccccCCEEEEe
Q 018246 263 ---PLLGLLKVNGKLVTV 277 (359)
Q Consensus 263 ---~~~~~l~~~G~~v~~ 277 (359)
...+.+.+..+++..
T Consensus 81 ~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 81 FIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp HHHHHHHHTSCCCEEEEC
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 222333444565553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=55.91 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=56.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++ .+++
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 87 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI 87 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 99999999999999999999999998877664443 322 22355555444333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 88 d~li~~Ag~ 96 (253)
T 3qiv_A 88 DYLVNNAAI 96 (253)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCc
Confidence 999999875
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0032 Score=54.46 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|...++.+...|++|+++++ ++++.+.+.++ .+.. ...|..+.+.+.++. ++
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK 85 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 99999999999899999999999 76665544333 3432 123555554433332 48
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 86 id~li~~Ag~ 95 (261)
T 1gee_A 86 LDVMINNAGL 95 (261)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=58.02 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=68.4
Q ss_pred EEEEECC-chHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
+|||+|+ |.+|..+++.+... |.+|++++|++++...+ ...+... ..|..+.+.+.++..++|+||.+++..
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~ 80 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSF 80 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHH
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccch
Confidence 4899986 99999999988887 89999999998875444 3334433 346677777888888999999998852
Q ss_pred ---hhHHHHHhccccC--CEEEEecCCC
Q 018246 259 ---HSLAPLLGLLKVN--GKLVTVGLPE 281 (359)
Q Consensus 259 ---~~~~~~~~~l~~~--G~~v~~g~~~ 281 (359)
.....+++.++.. ++++.++...
T Consensus 81 ~~~~~~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 81 KRIPEVENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 1123455555444 4888876543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00087 Score=55.59 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=65.4
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.+|||.|+ |.+|...++.+...|.+|+++++++++.+.. ...+... ..|..+.+.+.++..++|+||.+++...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 82 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS 82 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCC
Confidence 58999987 9999999999999999999999988764322 1112322 2355666677777788999999988532
Q ss_pred -------hHHHHHhcccc--CCEEEEecCC
Q 018246 260 -------SLAPLLGLLKV--NGKLVTVGLP 280 (359)
Q Consensus 260 -------~~~~~~~~l~~--~G~~v~~g~~ 280 (359)
....+++.+.. .++++.++..
T Consensus 83 ~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 83 PTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred ccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 12333444433 3588887653
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0041 Score=56.47 Aligned_cols=75 Identities=20% Similarity=0.383 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-------H---HHHHHHcCCc---EEecCCCHHHHHHh----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-------E---SEAISKLGAD---AFLVSSDPAKVKAA---- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-------~---~~~~~~~g~~---~v~~~~~~~~~~~~---- 244 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++ + ...++..|.. ...|..+.+.+.++
T Consensus 44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~ 123 (346)
T 3kvo_A 44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA 123 (346)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 5789999986 999999999999999999999998764 1 1122444533 22356665444433
Q ss_pred ---cCCccEEEECCCC
Q 018246 245 ---MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ---~~~~d~vid~~g~ 257 (359)
.+++|++++++|.
T Consensus 124 ~~~~g~iDilVnnAG~ 139 (346)
T 3kvo_A 124 IKKFGGIDILVNNASA 139 (346)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 2489999999984
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0019 Score=56.19 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh---hhHHHHHHH---cCCc---EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP---KKESEAISK---LGAD---AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~---~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~ 245 (359)
.++++||.|+ +++|.++++.+...|++|+++++.. ++.+.+.++ .|.. ...|-.+.+.+.++ .
T Consensus 10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 89 (262)
T 3ksu_A 10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF 89 (262)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999986 9999999999999999999987653 344433333 2432 22355555444433 2
Q ss_pred CCccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCC
Q 018246 246 GTMDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 246 ~~~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+++|++++++|.. ...+.+...|+++|+++.++..
T Consensus 90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~ 149 (262)
T 3ksu_A 90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS 149 (262)
T ss_dssp CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence 4899999999831 1123445566678999998754
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0022 Score=56.42 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++ .+++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 106 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHL 106 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 5788999986 99999999999999999999999998877765554 222 22355555443333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 107 D~lVnnAg~ 115 (283)
T 3v8b_A 107 DIVVANAGI 115 (283)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999884
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=57.20 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.....++.+...+ .|..+.+.+.++ .+++|++++
T Consensus 26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~ 105 (260)
T 3gem_A 26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVH 105 (260)
T ss_dssp -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4678999986 9999999999999999999999998876555566665432 355555443333 248999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 106 nAg~ 109 (260)
T 3gem_A 106 NASE 109 (260)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9883
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0018 Score=55.07 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=56.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhc----CCccEEEECCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAM----GTMDYIIDTVS 256 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~----~~~d~vid~~g 256 (359)
+++||.|+ |++|.+.+..+...|++|+++++++++.+.+.++++.. ...|..+.+.+.++. ..+|++++++|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag 81 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG 81 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence 36899986 99999999999999999999999999988886666532 334666665555543 34699999988
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 82 ~ 82 (230)
T 3guy_A 82 S 82 (230)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0033 Score=52.87 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=63.2
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCCh-----
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAV----- 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~----- 258 (359)
+|||+|+ |.+|...++.+...|.+|++++|++++...+ ...+...+ .|..+.+. +...++|+||.+++..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~ 78 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-LGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSGR 78 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-TCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSSC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-cCCCceEEecccccccH--hhcccCCEEEECCccCCCcch
Confidence 5899987 9999999999999999999999998877654 23344433 23333222 4456899999999862
Q ss_pred -----hhHHHHHhcccc-CCEEEEecC
Q 018246 259 -----HSLAPLLGLLKV-NGKLVTVGL 279 (359)
Q Consensus 259 -----~~~~~~~~~l~~-~G~~v~~g~ 279 (359)
.....+++.++. +++++.++.
T Consensus 79 ~~~n~~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 79 GYLHLDFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp THHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence 112345555543 478888854
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0039 Score=54.60 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-------------ChhhHHHHHH---HcCCcE---EecCCCHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-------------SPKKESEAIS---KLGADA---FLVSSDPAKVK 242 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-------------~~~~~~~~~~---~~g~~~---v~~~~~~~~~~ 242 (359)
.|+++||.|+ +++|.++++.+...|++|+++++ +.++.+...+ ..+... ..|..+.+.+.
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 89 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR 89 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 5789999986 99999999999999999999988 4555544433 334322 23555554444
Q ss_pred Hh-------cCCccEEEECCCC
Q 018246 243 AA-------MGTMDYIIDTVSA 257 (359)
Q Consensus 243 ~~-------~~~~d~vid~~g~ 257 (359)
++ .+++|++++++|.
T Consensus 90 ~~~~~~~~~~g~id~lvnnAg~ 111 (277)
T 3tsc_A 90 KVVDDGVAALGRLDIIVANAGV 111 (277)
T ss_dssp HHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 33 2479999999974
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0014 Score=56.93 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=55.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---C-Cc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---G-AD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g-~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ + .. ...|-.+.+.+.++ .++
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG 88 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 5789999986 99999999999999999999999998876654443 2 11 22355555444433 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 89 id~lvnnAg~ 98 (262)
T 3pk0_A 89 IDVVCANAGV 98 (262)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999883
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=60.08 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=70.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh-h-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV-H- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~- 259 (359)
-.|.+|.|+|.|.+|...++.++.+|.+|++.++++...+.+ ++.|+..+ +.+.++....|+|+.++... .
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~------~~l~ell~~aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-KETGAKFV------EDLNEMLPKCDVIVINMPLTEKT 234 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-HHHCCEEC------SCHHHHGGGCSEEEECSCCCTTT
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-HhCCCeEc------CCHHHHHhcCCEEEECCCCCHHH
Confidence 368899999999999999999999999999999887665555 56676542 12445566789999988732 1
Q ss_pred --hH-HHHHhccccCCEEEEecC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..+|.++.
T Consensus 235 ~~li~~~~l~~mk~gailIN~aR 257 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNAR 257 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSC
T ss_pred HHhhcHHHHhcCCCCCEEEECcC
Confidence 12 567888999999999864
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0028 Score=54.78 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=51.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh--HHHHHHHcCCcEE---ecCCCHHHHHHhc-------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK--ESEAISKLGADAF---LVSSDPAKVKAAM-------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~--~~~~~~~~g~~~v---~~~~~~~~~~~~~-------~~~d 249 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++ .+.+ ++.+.+.. .|..+.+.+.++. +++|
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (255)
T 2q2v_A 3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEI-ARHGVKAVHHPADLSDVAQIEALFALAEREFGGVD 81 (255)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678999986 999999999999999999999988752 1222 23343321 3445554444332 4899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 82 ~lv~~Ag~ 89 (255)
T 2q2v_A 82 ILVNNAGI 89 (255)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0023 Score=55.66 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=55.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCc-E---EecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGAD-A---FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~-~---v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ +++|.++++.+...|++|+++++++++.+.+.++ .+.. . ..|-.+.+.+.++ .+
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG 86 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999986 9999999999999999999999999877665443 3322 1 2355555443333 25
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 87 ~id~lvnnAg~ 97 (265)
T 3lf2_A 87 CASILVNNAGQ 97 (265)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999999984
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0027 Score=54.90 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=54.0
Q ss_pred CCEEEEECC-chHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~ 250 (359)
|+++||.|+ |++|.+.++.+... |++|+.+++++++.+.+.++++... ..|-.+.+.+.++ .+++|+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 81 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS 81 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence 578999986 99999988766655 4799999999998888867666432 2355555444333 248999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
+++++|.
T Consensus 82 lvnnAg~ 88 (254)
T 3kzv_A 82 LVANAGV 88 (254)
T ss_dssp EEEECCC
T ss_pred EEECCcc
Confidence 9999884
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0022 Score=55.37 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----C-C-c--EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----G-A-D--AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g-~-~--~v~~~~~~~~~~~~-------~ 245 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ + . - ...|-.+.+.+.++ .
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence 5788999986 99999999998888999999999998876664432 2 1 1 22355555443332 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 86 g~iD~lvnnAg~ 97 (250)
T 3nyw_A 86 GAVDILVNAAAM 97 (250)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 489999999985
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=55.49 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=65.9
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCC-HHHHHHhcCCccEEEECCCChh---
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSD-PAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~-~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
+|||+|+ |.+|...++.+...|.+|++++|++++.+.. .+.. ...|..+ .+.+.++..++|+||.+++...
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~ 78 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSL 78 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCc
Confidence 5899986 9999999999999999999999998764322 1222 2235566 6677777789999999998531
Q ss_pred ------hHHHHHhccccC--CEEEEecCCC
Q 018246 260 ------SLAPLLGLLKVN--GKLVTVGLPE 281 (359)
Q Consensus 260 ------~~~~~~~~l~~~--G~~v~~g~~~ 281 (359)
....+++.++.. +++|.++...
T Consensus 79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 108 (219)
T 3dqp_A 79 LKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108 (219)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 122344444333 5899887654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0026 Score=56.40 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=69.5
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhcCCccE
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~ 250 (359)
....++++++||-+|+|. |..+..+++..|++|++++.+++..+.+.+. .|.. .++.. +. ..+.+.+|+
T Consensus 66 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~---~~~~~~fD~ 140 (302)
T 3hem_A 66 DKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ-GW---EEFDEPVDR 140 (302)
T ss_dssp HTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC-CG---GGCCCCCSE
T ss_pred HHcCCCCcCEEEEeeccC-cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-CH---HHcCCCccE
Confidence 333458999999999985 8888999998889999999999988777433 2321 12211 11 122468999
Q ss_pred EEECCCC---------------hhhHHHHHhccccCCEEEEecC
Q 018246 251 IIDTVSA---------------VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 251 vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
|+....- ...+..+.+.|+|+|+++....
T Consensus 141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9874321 2347889999999999988754
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0028 Score=55.49 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=54.8
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c---EEecCCCHHHHHHhc-------CCccEE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D---AFLVSSDPAKVKAAM-------GTMDYI 251 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~~-------~~~d~v 251 (359)
+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++.. . ...|-.+.+.+.++. +++|++
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 101 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL 101 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 68999886 9999999999999999999999999887776555432 1 223556655544432 368999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 102 vnnAG~ 107 (272)
T 2nwq_A 102 INNAGL 107 (272)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999874
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=57.99 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=69.9
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d 249 (359)
...+|...+.--.++++||+|+|++|.+++..+...|+ +|+++.|+.++.+.+.+++. .+.. +.+.+ . .+|
T Consensus 109 ~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~~---~~l~~-l-~~D 180 (282)
T 3fbt_A 109 FGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISY---DELSN-L-KGD 180 (282)
T ss_dssp HHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEEH---HHHTT-C-CCS
T ss_pred HHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cccH---HHHHh-c-cCC
Confidence 34455554432468899999999999999999999999 99999999998877644442 2222 22333 2 799
Q ss_pred EEEECCCChhh-----HHHHHhccccCCEEEEecCCC
Q 018246 250 YIIDTVSAVHS-----LAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 250 ~vid~~g~~~~-----~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+||++++.... .......++++..++++....
T Consensus 181 ivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P 217 (282)
T 3fbt_A 181 VIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP 217 (282)
T ss_dssp EEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSS
T ss_pred EEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCC
Confidence 99999864210 011234567777777876543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0029 Score=57.27 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=45.1
Q ss_pred hHhcCC-CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE
Q 018246 175 MKYYGM-TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF 232 (359)
Q Consensus 175 l~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v 232 (359)
+...+. --+|++|.|.|.|.+|+.+++.++.+|++|++.+.++++.+.. +++|++.+
T Consensus 165 ~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a-~~~ga~~v 222 (355)
T 1c1d_A 165 VAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAV 222 (355)
T ss_dssp HHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC
T ss_pred HHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHH-HhcCCEEe
Confidence 344443 2578999999999999999999999999999999887774444 67776543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.002 Score=56.23 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=73.6
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+.......++....--.|.+++|+|.| .+|.-+++++...|++|++..+....++..
T Consensus 137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~----------------- 199 (288)
T 1b0a_A 137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH----------------- 199 (288)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH-----------------
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHH-----------------
Confidence 45677776767777777654689999999987 579999999999999999987655433322
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
....|+||.++|.+..+. -..++++..++++|...
T Consensus 200 ----~~~ADIVI~Avg~p~lI~--~~~vk~GavVIDVgi~r 234 (288)
T 1b0a_A 200 ----VENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGINR 234 (288)
T ss_dssp ----HHHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCEE
T ss_pred ----hccCCEEEECCCCcCcCC--HHHcCCCcEEEEccCCc
Confidence 234799999999886332 24579999999998753
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0058 Score=53.70 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=52.5
Q ss_pred CCCEEEEECC---chHHHHHHHHHHHCCCeEEEEeCChh---hHHHHHHHcCC-c-EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL---GGLGHVAVKIGKAFGLKVTVISTSPK---KESEAISKLGA-D-AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~---g~vG~~a~~la~~~g~~V~~v~~~~~---~~~~~~~~~g~-~-~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|++++++++ ..+.+.++.+. . ...|-.+.+.+.++ .++
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 99 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS 99 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999875 69999999999999999999999875 33344233442 2 22355555444333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 100 iD~lv~~Ag~ 109 (285)
T 2p91_A 100 LDIIVHSIAY 109 (285)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0027 Score=55.79 Aligned_cols=75 Identities=23% Similarity=0.321 Sum_probs=54.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++ .+++
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 102 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPI 102 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 99999999999999999999999998876664443 432 22355555443332 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 103 d~lv~nAg~ 111 (279)
T 3sju_A 103 GILVNSAGR 111 (279)
T ss_dssp CEEEECCCC
T ss_pred cEEEECCCC
Confidence 999999884
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0019 Score=56.74 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=55.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcEE---ecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADAF---LVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.... .|..+.+.+.++ .+++
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 86 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL 86 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5788999986 99999999999999999999999998887775554 32221 244554443333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 87 D~lvnnAg~ 95 (280)
T 3tox_A 87 DTAFNNAGA 95 (280)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999883
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0012 Score=56.98 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=54.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh-------------------hhHHHHHHHc---CC-cEE--ecC-
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP-------------------KKESEAISKL---GA-DAF--LVS- 235 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~-------------------~~~~~~~~~~---g~-~~v--~~~- 235 (359)
.+.+|+|+|+|++|..+++.+...|+ ++++++++. .+.+.+.+++ .. ..+ +..
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 35789999999999999999999998 899999886 5555443333 21 122 111
Q ss_pred CCHHHHHHhcCCccEEEECCCChhh
Q 018246 236 SDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 236 ~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
-+.+.+.++..++|+|++|+++..+
T Consensus 110 ~~~~~~~~~~~~~DvVi~~~d~~~~ 134 (249)
T 1jw9_B 110 LDDAELAALIAEHDLVLDCTDNVAV 134 (249)
T ss_dssp CCHHHHHHHHHTSSEEEECCSSHHH
T ss_pred CCHhHHHHHHhCCCEEEEeCCCHHH
Confidence 1223444555689999999998763
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00077 Score=57.64 Aligned_cols=97 Identities=18% Similarity=0.094 Sum_probs=64.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
+.+|||.|+ |.+|...++.+...|+ +|+++++++++.+.. ..-+... ..|..+.+.+.++..++|++|+++|...
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~~ 96 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTR 96 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-GGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCH
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc-ccCCceEEecCcCCHHHHHHHhcCCCEEEECCCccc
Confidence 578999986 9999999999988899 999999987654322 1112222 2344444555666678999999998532
Q ss_pred --------------hHHHHHhcccc--CCEEEEecCCC
Q 018246 260 --------------SLAPLLGLLKV--NGKLVTVGLPE 281 (359)
Q Consensus 260 --------------~~~~~~~~l~~--~G~~v~~g~~~ 281 (359)
....+++.+.. .++++.++...
T Consensus 97 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~ 134 (242)
T 2bka_A 97 GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 134 (242)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred ccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence 01233334433 36899887644
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0058 Score=53.76 Aligned_cols=75 Identities=28% Similarity=0.324 Sum_probs=52.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-------HHHH---HHHcCCc---EEecCCCHHHHHHh----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-------ESEA---ISKLGAD---AFLVSSDPAKVKAA---- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-------~~~~---~~~~g~~---~v~~~~~~~~~~~~---- 244 (359)
.++++||.|+ +++|.++++.+...|++|+++++++++ ++.. .++.+.. ...|-.+.+.+.++
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 87 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT 87 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 5789999986 999999999999999999999998762 2222 1344532 22355655444333
Q ss_pred ---cCCccEEEECCCC
Q 018246 245 ---MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ---~~~~d~vid~~g~ 257 (359)
.+++|++++++|.
T Consensus 88 ~~~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 88 VEQFGGIDICVNNASA 103 (285)
T ss_dssp HHHHSCCSEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 2489999999884
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0032 Score=55.00 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=52.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHH---HHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAI---SKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++ ++++.+.+. ++.+... ..|..+.+.+.++ .++
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~ 106 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR 106 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5788999986 99999999999999999999888 555544432 2334322 2355555444333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 107 id~lv~nAg~ 116 (269)
T 4dmm_A 107 LDVLVNNAGI 116 (269)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0025 Score=56.43 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=56.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----c---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----D---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++.. . ...|-.+.+.+.++ .++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 119 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA 119 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 5788999986 9999999999999999999999999887766555431 1 22355555443333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 120 iD~lvnnAg~ 129 (293)
T 3rih_A 120 LDVVCANAGI 129 (293)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0011 Score=56.23 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=67.6
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC-------CeEEEEeCChhhHHHHHHHc----------CCcEEecCCCHHHHH
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG-------LKVTVISTSPKKESEAISKL----------GADAFLVSSDPAKVK 242 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g-------~~V~~v~~~~~~~~~~~~~~----------g~~~v~~~~~~~~~~ 242 (359)
.++++++||.+|+|. |..+..+++..+ .+|++++.+++..+.+.+.+ ..-.++..+..+..
T Consensus 81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 158 (227)
T 1r18_A 81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY- 158 (227)
T ss_dssp TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-
T ss_pred hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC-
Confidence 357899999999876 888888888766 49999999998877763322 11122222211100
Q ss_pred HhcCCccEEEECCCChhhHHHHHhccccCCEEEEec
Q 018246 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
...+.||+|+...........+.+.|+++|+++..-
T Consensus 159 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 159 PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV 194 (227)
T ss_dssp GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred CcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence 012479999988777666789999999999988753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0029 Score=55.81 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-hhHHHHHHH----cCCc---EEecCCC----HHHHHHh-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-KKESEAISK----LGAD---AFLVSSD----PAKVKAA----- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-~~~~~~~~~----~g~~---~v~~~~~----~~~~~~~----- 244 (359)
.++++||.|+ |++|.++++.+...|++|+++++++ ++.+.+.++ .+.. ...|..+ .+.+.++
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~ 101 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF 101 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence 4678999986 9999999999988999999999998 665544333 3432 1235555 4433333
Q ss_pred --cCCccEEEECCCC
Q 018246 245 --MGTMDYIIDTVSA 257 (359)
Q Consensus 245 --~~~~d~vid~~g~ 257 (359)
.+++|++|+++|.
T Consensus 102 ~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 102 RAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HhcCCCCEEEECCCC
Confidence 2489999999873
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0036 Score=54.01 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.++ .+.+ ...|..+.+.+.++. +++
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 91 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV 91 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5688999986 9999999999999999999999998776554333 2432 123555554444332 479
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|+++.++|
T Consensus 92 d~vi~~Ag 99 (260)
T 3awd_A 92 DILVACAG 99 (260)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99999987
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.013 Score=52.97 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=84.9
Q ss_pred CEEEEECCchHHHHHHHHHH-HC-CCeE-EEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCChh
Q 018246 185 KHLGVAGLGGLGHVAVKIGK-AF-GLKV-TVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAVH 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~-~~-g~~V-~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~ 259 (359)
-+|.|+|+|.+|...++.++ .. ++++ .+.++++++.+.+.+++|...+++ + ..++. ..+|+|+.|++...
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~---~~~~l~~~~~D~V~i~tp~~~ 83 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N---YKDMIDTENIDAIFIVAPTPF 83 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C---HHHHHTTSCCSEEEECSCGGG
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C---HHHHhcCCCCCEEEEeCChHh
Confidence 36899999999998888776 44 6675 456888888877767788755442 2 22333 37999999999876
Q ss_pred hHHHHHhccccCCEEEEecCCCCCeeeCHHH---H---H-hc-CcEEE-EeecCCHHHHHHHHHHHHhCCCc
Q 018246 260 SLAPLLGLLKVNGKLVTVGLPEKPLEVPIFA---L---V-GA-RRLVG-GSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~---~-~k-~~~i~-g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
-.+.+..+++.|- -|++.- +...+... + . .+ ++.+. +........+..+.+++.+|.+-
T Consensus 84 h~~~~~~al~~G~-~v~~eK---p~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~iG 151 (346)
T 3cea_A 84 HPEMTIYAMNAGL-NVFCEK---PLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIG 151 (346)
T ss_dssp HHHHHHHHHHTTC-EEEECS---CCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCC-EEEEcC---CCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCCC
Confidence 5777788887754 444532 23333222 2 1 23 45554 33333335688999999999884
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0022 Score=57.87 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
-.|++|.|+|.|.+|...++.++..|.+|++.+++.++ +.+ .++|+.. .+ +.++....|+|+.++....
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~---l~ell~~aDvV~l~~P~t~~t 233 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVS-ASFGVQQ----LP---LEEIWPLCDFITVHTPLLPST 233 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHH-HHTTCEE----CC---HHHHGGGCSEEEECCCCCTTT
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCcee----CC---HHHHHhcCCEEEEecCCCHHH
Confidence 46889999999999999999999999999999988765 344 5777653 12 3455567899999887532
Q ss_pred --hH-HHHHhccccCCEEEEecCC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~~ 280 (359)
.+ ...+..|++++.++.++..
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg 257 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARG 257 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCT
T ss_pred HHhhCHHHHhhCCCCcEEEECCCc
Confidence 22 4678899999999999763
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=56.50 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=54.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c-EE--ecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D-AF--LVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~-~v--~~~~~~~~~~~~-------~~~~d 249 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++.. . .. .|..+.+.+.++ .+++|
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 107 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD 107 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4678999986 9999999999999999999999998877666454421 2 11 244554433332 24899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 108 ~lvnnAg~ 115 (276)
T 2b4q_A 108 ILVNNAGT 115 (276)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999873
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0026 Score=55.13 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=54.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.++ .+.. ...|..+.+.+.++ .+++
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 92 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV 92 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4788999986 9999999999999999999999998876554333 2432 12355555443333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 93 D~lv~~Ag~ 101 (260)
T 2zat_A 93 DILVSNAAV 101 (260)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0021 Score=56.21 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=55.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcEE---ecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADAF---LVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ |.... .|..+.+.+.++ .+++
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 104 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV 104 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence 5789999986 99999999999999999999999998876664443 43322 244554443333 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 105 D~lv~nAg~ 113 (271)
T 4ibo_A 105 DILVNNAGI 113 (271)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999884
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0009 Score=56.65 Aligned_cols=97 Identities=19% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHc---C-------CcEEecCCCHHHHHHhcCCc
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKL---G-------ADAFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~---g-------~~~v~~~~~~~~~~~~~~~~ 248 (359)
++++++||-+|+|. |..+..+++..| .+|++++.+++..+.+.+.+ + .-.++..+ ........+.|
T Consensus 75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~f 152 (226)
T 1i1n_A 75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD-GRMGYAEEAPY 152 (226)
T ss_dssp SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC-GGGCCGGGCCE
T ss_pred CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC-cccCcccCCCc
Confidence 47899999999875 778888888765 59999999998877763322 1 11222111 11100112479
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEecC
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
|+|+........+..+.+.|+|+|+++..-.
T Consensus 153 D~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 153 DAIHVGAAAPVVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEEECSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred CEEEECCchHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999877666667899999999999987643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0024 Score=56.00 Aligned_cols=74 Identities=26% Similarity=0.301 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ |++|.++++.+...|++|++++++.++.+...+++ +.. ...|-.+.+.+.++ .++
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 105 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGR 105 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999986 99999999999999999999999988766554433 432 22355555443333 248
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|++++++|
T Consensus 106 id~lv~nAg 114 (277)
T 4fc7_A 106 IDILINCAA 114 (277)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCc
Confidence 999999998
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0028 Score=54.26 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCcE---EecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGADA---FLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.++ .+... ..|..+.+.+.++. ++
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG 85 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4678999986 9999999999999999999999998876655332 34321 23555554444332 48
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 86 ~d~vi~~Ag~ 95 (248)
T 2pnf_A 86 IDILVNNAGI 95 (248)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0028 Score=58.89 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=69.9
Q ss_pred EEEEECCchHHHHHHHHHHHCC---CeEEEEeCChhhHHHHHHHcC------Cc-EEecCCCHHHHHHhcC--CccEEEE
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISTSPKKESEAISKLG------AD-AFLVSSDPAKVKAAMG--TMDYIID 253 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g---~~V~~v~~~~~~~~~~~~~~g------~~-~v~~~~~~~~~~~~~~--~~d~vid 253 (359)
+|+|+|+|.+|..+++.+...| .+|++++++.++.+.+.++++ .. ..+|..+.+.+.++.. ++|+|++
T Consensus 3 kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin 82 (405)
T 4ina_A 3 KVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLN 82 (405)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEE
Confidence 6899999999999999888887 499999999999887766553 22 2345555566666554 4999999
Q ss_pred CCCChhhHHHHHhccccCCEEEEecC
Q 018246 254 TVSAVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 254 ~~g~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+++..........+++.+-.++++..
T Consensus 83 ~ag~~~~~~v~~a~l~~g~~vvD~a~ 108 (405)
T 4ina_A 83 IALPYQDLTIMEACLRTGVPYLDTAN 108 (405)
T ss_dssp CSCGGGHHHHHHHHHHHTCCEEESSC
T ss_pred CCCcccChHHHHHHHHhCCCEEEecC
Confidence 99865435556677788888887643
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0025 Score=54.75 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc---EEecCCCHHHHHHhc-------CCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
++++||.|+ |++|...+..+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++. +++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI 81 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 568999986 99999999999999999999999988877664444 322 123555554444332 489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|+++|.
T Consensus 82 d~li~~Ag~ 90 (250)
T 2cfc_A 82 DVLVNNAGI 90 (250)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0026 Score=54.42 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=55.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+.+|||.|+ |.+|...++.+... |.+|+++++++++.+.+ ..+... ..|..+.+.+.++..++|+||.+++.
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence 4678999986 99999999999888 78999999988765433 122332 34566667777777889999998873
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0017 Score=56.57 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS-- 260 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~-- 260 (359)
.| +++|+|+|.+|.+.+..+...|++|++.++++++.+.+.++++.. + .+ ..+. ...|+|+.|++....
T Consensus 116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~--~--~~---~~~~-~~~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR--A--VP---LEKA-REARLLVNATRVGLEDP 186 (263)
T ss_dssp CS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE--E--CC---GGGG-GGCSEEEECSSTTTTCT
T ss_pred CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc--h--hh---Hhhc-cCCCEEEEccCCCCCCC
Confidence 56 899999999999999999999999999999998877776777764 2 12 2234 579999999986530
Q ss_pred H-HH-HHhccccCCEEEEecCC
Q 018246 261 L-AP-LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 261 ~-~~-~~~~l~~~G~~v~~g~~ 280 (359)
. .. ....++++..+++++..
T Consensus 187 ~~~~l~~~~l~~g~~viD~~~~ 208 (263)
T 2d5c_A 187 SASPLPAELFPEEGAAVDLVYR 208 (263)
T ss_dssp TCCSSCGGGSCSSSEEEESCCS
T ss_pred CCCCCCHHHcCCCCEEEEeecC
Confidence 0 00 14567788888887654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00085 Score=58.58 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=53.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|.++++.+...|++|++++++.++.+.+ ..-.. ....|-.+.+.+.++ .+++|++++
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn 93 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL-NLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN 93 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT-CCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-hcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence 4678999986 9999999999999999999999998776544 11111 123355555443333 248999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 94 nAg~ 97 (266)
T 3p19_A 94 NAGM 97 (266)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9984
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0098 Score=51.92 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=52.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-------HHHHH---HHcCCc---EEecCCCHHHHHHh----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-------ESEAI---SKLGAD---AFLVSSDPAKVKAA---- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-------~~~~~---~~~g~~---~v~~~~~~~~~~~~---- 244 (359)
.|+++||.|+ +++|.++++.+...|++|++++++.++ .+... +..+.. ...|-.+.+.+.++
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 84 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT 84 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999986 999999999999999999999998753 22221 233432 22355555444333
Q ss_pred ---cCCccEEEECCCC
Q 018246 245 ---MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ---~~~~d~vid~~g~ 257 (359)
.+++|++++++|.
T Consensus 85 ~~~~g~iD~lvnnAG~ 100 (274)
T 3e03_A 85 VDTFGGIDILVNNASA 100 (274)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCc
Confidence 2489999999984
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0021 Score=55.44 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
-++++||.|+ |++|.+.++.+...|++|+++++++++.+. ....++..+.+.+.++ .+++|+++++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~ 94 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD------HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCA 94 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS------EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4678999986 999999999999999999999998765321 1122344444333332 2478999999
Q ss_pred CCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 255 VSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 255 ~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+|.. ...+.+...++++|++|.++...
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 147 (251)
T 3orf_A 95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA 147 (251)
T ss_dssp CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence 9831 01234555666789999997644
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=55.68 Aligned_cols=85 Identities=22% Similarity=0.104 Sum_probs=61.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc---CCccEEEECCCCh
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM---GTMDYIIDTVSAV 258 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid~~g~~ 258 (359)
.++++||.|+ |++|.+.++.+...|++|++++++++ .|-.+.+.+.++. +++|++++++|..
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~ 70 (223)
T 3uce_A 5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETIGAFDHLIVTAGSY 70 (223)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4678999986 99999999999989999999987654 3444444443332 5789999888742
Q ss_pred --------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 259 --------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 259 --------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
...+.+...++++|+++.++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~ 119 (223)
T 3uce_A 71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGML 119 (223)
T ss_dssp CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchh
Confidence 12334556677789999997543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0041 Score=54.31 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=54.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|...+..+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++ .+++
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 109 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV 109 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence 5688999986 99999999999999999999999988766553332 432 12355555443332 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|+++|.
T Consensus 110 D~li~~Ag~ 118 (272)
T 1yb1_A 110 SILVNNAGV 118 (272)
T ss_dssp SEEEECCCC
T ss_pred cEEEECCCc
Confidence 999999974
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0014 Score=54.21 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHH---cCC---cEEecCCCHHHHH-HhcCCccEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISK---LGA---DAFLVSSDPAKVK-AAMGTMDYI 251 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~---~g~---~~v~~~~~~~~~~-~~~~~~d~v 251 (359)
++++++||-+|+|. |..+..+++..+ .+|++++.+++..+.+.+. .|. -.++..+ ...+. ...+.+|+|
T Consensus 20 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 20 VKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDG-HQNMDKYIDCPVKAV 97 (197)
T ss_dssp CCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSC-GGGGGGTCCSCEEEE
T ss_pred CCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECC-HHHHhhhccCCceEE
Confidence 37889999998876 778888888754 5999999999887777333 232 1222222 21222 222479999
Q ss_pred EECCCC---------------hhhHHHHHhccccCCEEEEecC
Q 018246 252 IDTVSA---------------VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 252 id~~g~---------------~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+...+- ...+..+.+.|+++|+++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 865532 1357889999999999987743
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0012 Score=60.28 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=69.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV-- 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-- 258 (359)
-.|.+|.|+|.|.+|...++.++.+|++ |++.++++...+.+ .++|+..+ .+ +.++....|+|+.++...
T Consensus 162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE-EKVGARRV---EN---IEELVAQADIVTVNAPLHAG 234 (364)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHH-HHTTEEEC---SS---HHHHHHTCSEEEECCCCSTT
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHH-HhcCcEec---CC---HHHHHhcCCEEEECCCCChH
Confidence 4788999999999999999999999997 99999887666555 56775432 12 334445789999988753
Q ss_pred --hhH-HHHHhccccCCEEEEecC
Q 018246 259 --HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 --~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|++++.++.++.
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCC
Confidence 223 457789999999999864
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0022 Score=55.81 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++ .+++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 89 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRV 89 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 99999999999999999999999998876664443 432 22355665444333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 90 d~lv~nAg~ 98 (264)
T 3ucx_A 90 DVVINNAFR 98 (264)
T ss_dssp SEEEECCCS
T ss_pred cEEEECCCC
Confidence 999999864
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0028 Score=54.81 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++ +.+.++++.. ...|..+.+.+.++ .+++|++++
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~ 83 (256)
T 2d1y_A 5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN 83 (256)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999986 999999999999999999999999887 5554555421 12355555433332 247999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 84 ~Ag~ 87 (256)
T 2d1y_A 84 NAAI 87 (256)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9874
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.002 Score=56.54 Aligned_cols=72 Identities=29% Similarity=0.372 Sum_probs=55.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHhc------CCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAAM------GTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~------~~~d~vi 252 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.++++... ..|..+.+.+.++. ++.|+++
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv 108 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAV 108 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 5678999986 999999999999999999999999999888877777432 23555554433322 3789999
Q ss_pred EC
Q 018246 253 DT 254 (359)
Q Consensus 253 d~ 254 (359)
.+
T Consensus 109 ~~ 110 (281)
T 3ppi_A 109 VA 110 (281)
T ss_dssp EC
T ss_pred Ec
Confidence 88
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0014 Score=53.51 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=65.1
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHh-cCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAA-MGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~-~~~~d~vid 253 (359)
.++++++||-+|+|. |..+..+++. +.+|++++.+++..+.+.+. .|.. .++. .+...+... .+.||+|+.
T Consensus 19 ~~~~~~~vLDiGcG~-G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~fD~v~~ 95 (185)
T 3mti_A 19 VLDDESIVVDATMGN-GNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGHENLDHYVREPIRAAIF 95 (185)
T ss_dssp TCCTTCEEEESCCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCGGGGGGTCCSCEEEEEE
T ss_pred hCCCCCEEEEEcCCC-CHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcHHHHHhhccCCcCEEEE
Confidence 347899999998875 7778888877 88999999999887777433 2322 2332 222222212 247999986
Q ss_pred CCCC-----------h----hhHHHHHhccccCCEEEEecC
Q 018246 254 TVSA-----------V----HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 254 ~~g~-----------~----~~~~~~~~~l~~~G~~v~~g~ 279 (359)
..+. . ..+..+.+.|+|+|+++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5321 1 235778899999999988744
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=57.78 Aligned_cols=89 Identities=27% Similarity=0.389 Sum_probs=68.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
-.|.+|.|+|.|.+|...++.++..|.+|++.++++++. .+ +++|+.. . + +.++....|+|+.++....
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~g~~~-~---~---l~ell~~aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KA-EKINAKA-V---S---LEELLKNSDVISLHVTVSKDA 210 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HH-HHTTCEE-C---C---HHHHHHHCSEEEECCCCCTTS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HH-HhcCcee-c---C---HHHHHhhCCEEEEeccCChHH
Confidence 478899999999999999999999999999999988764 34 6778653 1 2 2233346899999887432
Q ss_pred --hH-HHHHhccccCCEEEEecC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|++++.++.++.
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~ar 233 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSR 233 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSC
T ss_pred HHhhCHHHHhcCCCCCEEEECCC
Confidence 22 467788999999998865
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00096 Score=56.99 Aligned_cols=95 Identities=26% Similarity=0.284 Sum_probs=67.7
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE--EecCCCHHHHHHh--cCCccEEEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA--FLVSSDPAKVKAA--MGTMDYIID 253 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~--~~~~d~vid 253 (359)
++++++||.+|+| .|..+..+++..+.+|++++.+++..+.+.+. .|... ++..+ . .... ...+|+|+.
T Consensus 89 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d-~--~~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 89 LKPGMNILEVGTG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD-G--SKGFPPKAPYDVIIV 164 (235)
T ss_dssp CCTTCCEEEECCT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC-G--GGCCGGGCCEEEEEE
T ss_pred CCCCCEEEEEeCC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC-c--ccCCCCCCCccEEEE
Confidence 4789999999998 68888899988778999999999887777433 34321 22111 1 1111 125999998
Q ss_pred CCCChhhHHHHHhccccCCEEEEecC
Q 018246 254 TVSAVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 254 ~~g~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+..-......+.+.|+++|+++..-.
T Consensus 165 ~~~~~~~~~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 165 TAGAPKIPEPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred CCcHHHHHHHHHHhcCCCcEEEEEEe
Confidence 77766556788999999999887643
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0025 Score=55.97 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC---cE---EecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA---DA---FLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~---~~---v~~~~~~~~~~~~-------~ 245 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+.+++ +. .. ..|-.+.+.+.++ .
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH 89 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 5789999986 99999999999999999999999998776654443 32 11 1355555443333 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 90 g~id~lv~nAg~ 101 (281)
T 3svt_A 90 GRLHGVVHCAGG 101 (281)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 489999999985
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0016 Score=56.41 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ |++|.+.++.+...|++|+++++++++.+.+.++ .+.. ...|-.+.+.+.++ .+++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 90 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI 90 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5789999986 9999999998888899999999998877665443 3432 22355555443333 2489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 91 d~lv~nAg~ 99 (256)
T 3gaf_A 91 TVLVNNAGG 99 (256)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0014 Score=56.69 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=73.6
Q ss_pred CceEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH
Q 018246 147 HYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK 226 (359)
Q Consensus 147 ~~~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~ 226 (359)
...+.+++++.+.....-... .....+... ++++++||-+|+|. |..++.+++ .|++|++++.++...+.+.+.
T Consensus 88 ~~~~~l~p~~~fgtg~~~tt~--~~~~~l~~~--~~~~~~VLDiGcG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n 161 (254)
T 2nxc_A 88 EIPLVIEPGMAFGTGHHETTR--LALKALARH--LRPGDKVLDLGTGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEAN 161 (254)
T ss_dssp SEEEECCCC-----CCSHHHH--HHHHHHHHH--CCTTCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHH
T ss_pred ceEEEECCCccccCCCCHHHH--HHHHHHHHh--cCCCCEEEEecCCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHH
Confidence 445667666655443211111 112233333 37889999999876 777777666 577999999999987777332
Q ss_pred ---cCCc-EEecCCCHHHHHHh-cCCccEEEECCCCh---hhHHHHHhccccCCEEEEecC
Q 018246 227 ---LGAD-AFLVSSDPAKVKAA-MGTMDYIIDTVSAV---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 227 ---~g~~-~v~~~~~~~~~~~~-~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.+.. .++..+ . ...+ .+.+|+|+.+.... ..+..+.+.|+|+|+++..+.
T Consensus 162 ~~~~~~~v~~~~~d-~--~~~~~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 162 AKRNGVRPRFLEGS-L--EAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp HHHTTCCCEEEESC-H--HHHGGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHcCCcEEEEECC-h--hhcCcCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence 3332 222211 1 1123 35799999765322 246778889999999998754
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=56.91 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=68.9
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-CCc
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-GTM 248 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-~~~ 248 (359)
...++++++||.+|+|. |..+..+++.. +.+|++++.+++..+.+.+. .|.. .++..+-. ..+. ..+
T Consensus 88 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~ 163 (255)
T 3mb5_A 88 YAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY---EGIEEENV 163 (255)
T ss_dssp HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG---GCCCCCSE
T ss_pred hhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh---hccCCCCc
Confidence 33458999999999886 88888899885 46999999999888777433 2432 22221111 1122 369
Q ss_pred cEEEECCCChh-hHHHHHhccccCCEEEEe
Q 018246 249 DYIIDTVSAVH-SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 249 d~vid~~g~~~-~~~~~~~~l~~~G~~v~~ 277 (359)
|+|+....... .+..+.+.|+++|+++..
T Consensus 164 D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 164 DHVILDLPQPERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp EEEEECSSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 99998777653 689999999999999876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0024 Score=57.05 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=68.4
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhcCCccEE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~d~v 251 (359)
...++++++||.+|+|. |..+..+++..|++|++++.+++..+.+.+.. |.. .++.. +. ..+.+.+|+|
T Consensus 85 ~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~---~~~~~~fD~v 159 (318)
T 2fk8_A 85 KLDLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ-GW---EDFAEPVDRI 159 (318)
T ss_dssp TSCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES-CG---GGCCCCCSEE
T ss_pred hcCCCCcCEEEEEcccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-Ch---HHCCCCcCEE
Confidence 33457899999999876 88888888887999999999999887774432 321 22211 11 1223679999
Q ss_pred EEC-----CCC---hhhHHHHHhccccCCEEEEecC
Q 018246 252 IDT-----VSA---VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 252 id~-----~g~---~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+.. .+. ...+..+.+.|+|+|+++....
T Consensus 160 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 160 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 976 332 2356788899999999987643
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0028 Score=54.53 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=54.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE---EecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA---FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~-------~~~ 248 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.++ .+... ..|..+.+.+.++. +++
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 89 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV 89 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999986 9999999999998999999999998876554333 34321 23555554444332 489
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.++|.
T Consensus 90 d~vi~~Ag~ 98 (255)
T 1fmc_A 90 DILVNNAGG 98 (255)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0036 Score=54.29 Aligned_cols=75 Identities=25% Similarity=0.345 Sum_probs=54.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhc--------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAM--------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~--------~~ 247 (359)
.+++|||.|+ |++|...++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++. ++
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 92 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK 92 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 5678999986 99999999999999999999999988766553332 432 123455544433332 67
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 93 id~li~~Ag~ 102 (266)
T 1xq1_A 93 LDILINNLGA 102 (266)
T ss_dssp CSEEEEECCC
T ss_pred CcEEEECCCC
Confidence 9999999874
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0034 Score=55.44 Aligned_cols=43 Identities=19% Similarity=0.047 Sum_probs=36.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEe-CChhhHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAIS 225 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~~ 225 (359)
.++++||.|+ |++|.++++.+...|++|++++ +++++.+.+.+
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~ 52 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA 52 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 4678999886 9999999999999999999999 99887665544
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0063 Score=52.83 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCCCEEEEEC-C--chHHHHHHHHHHHCCCeEEEEeCChhh---HHHHHHHcCC-c-EEecCCCHHHHHHh-------cC
Q 018246 182 EPGKHLGVAG-L--GGLGHVAVKIGKAFGLKVTVISTSPKK---ESEAISKLGA-D-AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 182 ~~g~~VlI~G-~--g~vG~~a~~la~~~g~~V~~v~~~~~~---~~~~~~~~g~-~-~v~~~~~~~~~~~~-------~~ 246 (359)
.++++|||.| + |++|...++.+...|++|+++++++.. .+.+.++.+. . ...|-.+.+.+.++ .+
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 91 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWD 91 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5788999987 4 799999999999999999999888543 3333344442 2 23455665444333 24
Q ss_pred CccEEEECCCChh------------------------------hHHHHHhccccCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAVH------------------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~~------------------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++|++++++|... ..+.+...|+++|+++.++...
T Consensus 92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~ 156 (271)
T 3ek2_A 92 SLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLG 156 (271)
T ss_dssp CEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGG
T ss_pred CCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccc
Confidence 8999999987321 1233455666789999887643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0048 Score=54.24 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=54.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~-------~~~ 248 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+++ +... ..|..+.+.+.++. +++
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i 122 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV 122 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999986 99999999999989999999998887766553333 4332 23555554444332 479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|.++|.
T Consensus 123 d~li~~Ag~ 131 (285)
T 2c07_A 123 DILVNNAGI 131 (285)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999874
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0022 Score=55.28 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=55.2
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhc-------CCccEEEE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAM-------GTMDYIID 253 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~-------~~~d~vid 253 (359)
+++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.. ...|-.+.+.+.++. +++|++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn 80 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN 80 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 36888886 99999999999999999999999998887776666532 223556655544432 37999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 81 nAg~ 84 (248)
T 3asu_A 81 NAGL 84 (248)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9873
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0036 Score=56.76 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=58.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHC-CC-eEEEEeCChhhHHHHHHHcC---Cc-EEecCCCHHHHHHhcCCccEEEECC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAF-GL-KVTVISTSPKKESEAISKLG---AD-AFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~-g~-~V~~v~~~~~~~~~~~~~~g---~~-~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.+.+|||.|+ |.+|...++.+... |. +|+++++++++.+.+.+.+. .. ...|..+.+.+.++..++|+||.++
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~A 99 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAA 99 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECC
Confidence 4688999986 99999999888877 98 99999999887766644443 22 2235666777777778999999999
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
+.
T Consensus 100 a~ 101 (344)
T 2gn4_A 100 AL 101 (344)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=56.14 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=54.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC---c---EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA---D---AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~---~---~v~~~~~~~~~~~~-------~ 245 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +. . ...|-.+.+.+.++ .
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 84 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 4678999986 99999999999999999999999988776654433 22 2 12355555444333 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 85 g~iD~lv~nAg~ 96 (280)
T 1xkq_A 85 GKIDVLVNNAGA 96 (280)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 479999999873
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=56.79 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=54.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC---c---EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA---D---AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~---~---~v~~~~~~~~~~~~-------~ 245 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +. . ...|..+.+.+.++ .
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 104 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 104 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 4678999986 99999999999999999999999988776553332 32 2 12355555444333 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 105 g~iD~lvnnAG~ 116 (297)
T 1xhl_A 105 GKIDILVNNAGA 116 (297)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 489999999873
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0014 Score=56.50 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=68.9
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHc----CCc--EEecCCCHHHHHHhc-CCccE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKL----GAD--AFLVSSDPAKVKAAM-GTMDY 250 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~-~~~d~ 250 (359)
.++++++||.+|+|. |..+..+++.. +.+|++++.+++..+.+.+.+ |.. .++..+-.+. .+. +.+|+
T Consensus 93 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~ 169 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDG 169 (258)
T ss_dssp TCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEE
T ss_pred CCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCE
Confidence 458999999999985 88889999885 469999999999887774432 522 2221111110 122 36999
Q ss_pred EEECCCCh-hhHHHHHhccccCCEEEEec
Q 018246 251 IIDTVSAV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 251 vid~~g~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
|+...... ..+..+.+.|+++|+++.+.
T Consensus 170 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 170 VALDLMEPWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp EEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred EEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 99776655 56899999999999998864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0043 Score=52.97 Aligned_cols=95 Identities=17% Similarity=0.121 Sum_probs=67.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh---------
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA--------- 244 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~--------- 244 (359)
.++++||.+|+| .|..+..+++.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+...
T Consensus 59 ~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 59 SGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 567899999987 588889999987 56999999999887777443 3432 22222222333333
Q ss_pred ------c-CCccEEEECCCCh---hhHHHHHhccccCCEEEEe
Q 018246 245 ------M-GTMDYIIDTVSAV---HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 245 ------~-~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~ 277 (359)
. +.||+|+...... ..+..+.+.|+++|.++..
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 1 5799999876654 3467889999999999875
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0025 Score=54.96 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC-hhhHHHHHHHc---CCc---EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-PKKESEAISKL---GAD---AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |.+|...++.+...|++|++++++ +++.+.+.+++ +.. ...|..+.+.+.++. ++
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG 85 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 999999999999999999999998 66665543332 432 123555554444332 38
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 86 id~vi~~Ag~ 95 (258)
T 3afn_B 86 IDVLINNAGG 95 (258)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0073 Score=54.14 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=66.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
..+|.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|.... . ...++....|+|+.|+.....+..
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~~---~---~~~e~~~~aDvVi~~vp~~~~~~~ 103 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASL-AALGATIH---E---QARAAARDADIVVSMLENGAVVQD 103 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HTTTCEEE---S---SHHHHHTTCSEEEECCSSHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHH-HHCCCEee---C---CHHHHHhcCCEEEEECCCHHHHHH
Confidence 4589999999999999999999999999999999998887 55565432 1 123444578999999997543544
Q ss_pred HH------hccccCCEEEEecCC
Q 018246 264 LL------GLLKVNGKLVTVGLP 280 (359)
Q Consensus 264 ~~------~~l~~~G~~v~~g~~ 280 (359)
.+ ..++++..++.++..
T Consensus 104 v~~~~~~~~~l~~~~~vi~~st~ 126 (320)
T 4dll_A 104 VLFAQGVAAAMKPGSLFLDMASI 126 (320)
T ss_dssp HHTTTCHHHHCCTTCEEEECSCC
T ss_pred HHcchhHHhhCCCCCEEEecCCC
Confidence 44 356777777777543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.003 Score=54.57 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---cEEecCCCHHHHHHhcCCccEEEECCC
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---DAFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.++++.+||-+|+| .|..+..+++..+++|++++.+++..+.+.+.... -.++..+-. ......+.+|+|+....
T Consensus 52 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 52 ELNENSKVLDIGSG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TKEFPENNFDLIYSRDA 129 (266)
T ss_dssp CCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TCCCCTTCEEEEEEESC
T ss_pred CCCCCCEEEEECCC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cCCCCCCcEEEEeHHHH
Confidence 34789999999987 68888888887789999999999998888444321 112211111 11011247999997643
Q ss_pred Chh--------hHHHHHhccccCCEEEEecC
Q 018246 257 AVH--------SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 257 ~~~--------~~~~~~~~l~~~G~~v~~g~ 279 (359)
-.. .+..+.+.|+|+|+++....
T Consensus 130 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 130 ILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 222 46788899999999988753
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0051 Score=52.51 Aligned_cols=74 Identities=27% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-------CCc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
|+++||.|+ |++|...++.+...|++|+++ ++++++.+.+.++ .+.. ...|..+.+.+.++. +++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 468899886 999999999999999999984 7887766554332 3432 123555554444332 479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++|+++|.
T Consensus 81 d~li~~Ag~ 89 (244)
T 1edo_A 81 DVVVNNAGI 89 (244)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999873
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0031 Score=55.12 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHHc----CCcE---EecCCCH----HHHHHh-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISKL----GADA---FLVSSDP----AKVKAA----- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~~----g~~~---v~~~~~~----~~~~~~----- 244 (359)
.++++||.|+ |++|.++++.+...|++|+++++ ++++.+.+.+++ +... ..|-.+. +.+.++
T Consensus 10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 89 (276)
T 1mxh_A 10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF 89 (276)
T ss_dssp -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence 4678999886 99999999999999999999999 877766554443 4321 2244444 433333
Q ss_pred --cCCccEEEECCCC
Q 018246 245 --MGTMDYIIDTVSA 257 (359)
Q Consensus 245 --~~~~d~vid~~g~ 257 (359)
.+++|++|+++|.
T Consensus 90 ~~~g~id~lv~nAg~ 104 (276)
T 1mxh_A 90 RAFGRCDVLVNNASA 104 (276)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HhcCCCCEEEECCCC
Confidence 2489999999883
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0024 Score=54.89 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHh---cCCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAA---MGTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~---~~~~d~vid~~g 256 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+.+. ++. .. ...|..+.+.+.++ .+++|++++++|
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag 83 (246)
T 2ag5_A 5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG 83 (246)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence 4678999986 99999999999999999999999988776553 432 22 22355665555444 358999999988
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 84 ~ 84 (246)
T 2ag5_A 84 F 84 (246)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0028 Score=55.52 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=66.8
Q ss_pred EEEEECC-chHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCCh---
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAV--- 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~--- 258 (359)
+|||.|+ |.+|...++.+... |.+|+++++++++.+.+ ...+...+ .|..+.+.+.++..++|+||.+++..
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~ 80 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTL-ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN 80 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHH-hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence 5899886 99999999988887 89999999988776655 34455433 35666777777778999999998742
Q ss_pred ----hhHHHHHhccccC--CEEEEecCC
Q 018246 259 ----HSLAPLLGLLKVN--GKLVTVGLP 280 (359)
Q Consensus 259 ----~~~~~~~~~l~~~--G~~v~~g~~ 280 (359)
.....+++.++.. ++++.++..
T Consensus 81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 81 TLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 1123344444433 488887653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=52.75 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=67.7
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHH-hcCCccEEEECCCChh-
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKA-AMGTMDYIIDTVSAVH- 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~-~~~~~d~vid~~g~~~- 259 (359)
.+|.|+|.|.+|.+.+..++..|. +|++.++++++.+.+ .+.|. +..... ..+ ...+.|+||.|+....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-~~~G~~~~~~~~-----~~~~~~~~aDvVilavp~~~~ 107 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTS-----IAKVEDFSPDFVMLSSPVRTF 107 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESC-----TTGGGGGCCSEEEECSCGGGH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHCCCcchhcCC-----HHHHhhccCCEEEEeCCHHHH
Confidence 579999999999999999999998 999999999998888 67775 233221 123 3457899999998764
Q ss_pred --hHHHHHhccccCCEEEEecCC
Q 018246 260 --SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 --~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.+......++++..+++++..
T Consensus 108 ~~vl~~l~~~l~~~~iv~d~~Sv 130 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTDQGSV 130 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEECCSC
T ss_pred HHHHHHHhhccCCCcEEEECCCC
Confidence 234455567777777777654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0012 Score=57.88 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=68.6
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c-EEecCCCHHHHHHhc-CC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D-AFLVSSDPAKVKAAM-GT 247 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~-~~ 247 (359)
..+++..+.--.+++++|+|+|++|.+++..+...|++|+++.|+.++.+.+.++++. . ...+. ..+. +.
T Consensus 107 ~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~------~~~~~~~ 180 (272)
T 1p77_A 107 VTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSM------DSIPLQT 180 (272)
T ss_dssp HHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEG------GGCCCSC
T ss_pred HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeH------HHhccCC
Confidence 3445443332367899999999999999999999999999999999988777666653 1 12221 1222 47
Q ss_pred ccEEEECCCChhhHHH----HHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAVHSLAP----LLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~~~~~~----~~~~l~~~G~~v~~g~~~ 281 (359)
+|+++++++... ... ....+.++..++++....
T Consensus 181 ~DivIn~t~~~~-~~~~~~i~~~~l~~~~~v~D~~y~p 217 (272)
T 1p77_A 181 YDLVINATSAGL-SGGTASVDAEILKLGSAFYDMQYAK 217 (272)
T ss_dssp CSEEEECCCC--------CCCHHHHHHCSCEEESCCCT
T ss_pred CCEEEECCCCCC-CCCCCCCCHHHcCCCCEEEEeeCCC
Confidence 999999998755 211 123456677777776643
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0042 Score=53.29 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=54.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+. .+.+ ...|..+.+.+.++ .+++
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI 83 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999986 9999999999999999999999998877665333 3432 22355555443333 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 84 d~li~~Ag~ 92 (247)
T 3lyl_A 84 DILVNNAGI 92 (247)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999999984
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0044 Score=53.61 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=52.9
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh--HHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK--ESEAISKL---GADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~--~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
++++||.|+ |++|.+.++.+...|++|+++++++++ .+.+.+++ +... ..|-.+.+.+.++ .++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 578999986 999999999888889999999998876 55443332 4321 2355555444333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 82 iD~lv~nAg~ 91 (258)
T 3a28_C 82 FDVLVNNAGI 91 (258)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0013 Score=55.70 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=66.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh-cCCccEEEECCCChhh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA-MGTMDYIIDTVSAVHS 260 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~d~vid~~g~~~~ 260 (359)
.++.+||-+|+|. |..+..+++. |++|++++.+++..+.+.+....-.++..+-.+.+... .+.||+|+....-...
T Consensus 47 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~~ 124 (226)
T 3m33_A 47 TPQTRVLEAGCGH-GPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSV 124 (226)
T ss_dssp CTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSGG
T ss_pred CCCCeEEEeCCCC-CHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHHH
Confidence 6788999999864 6677777776 88999999999988888554332233322211111111 2479999988666666
Q ss_pred HHHHHhccccCCEEEEec
Q 018246 261 LAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g 278 (359)
+..+.+.|+|+|+++..+
T Consensus 125 l~~~~~~LkpgG~l~~~~ 142 (226)
T 3m33_A 125 ILRLPELAAPDAHFLYVG 142 (226)
T ss_dssp GGGHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEeC
Confidence 889999999999999443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0027 Score=58.39 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh---
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV--- 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~--- 258 (359)
-.|.+|.|+|.|.+|...++.++.+|.+|++.+++....+.+ +.+|+... . .+.++....|+|+.++...
T Consensus 189 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~-~~~G~~~~---~---~l~ell~~aDvV~l~~Plt~~t 261 (393)
T 2nac_A 189 LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTWH---A---TREDMYPVCDVVTLNCPLHPET 261 (393)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEEC---S---SHHHHGGGCSEEEECSCCCTTT
T ss_pred CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhH-hhcCceec---C---CHHHHHhcCCEEEEecCCchHH
Confidence 368899999999999999999999999999999887655555 56676532 1 1345556789999988732
Q ss_pred -hhH-HHHHhccccCCEEEEecC
Q 018246 259 -HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 -~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|+++..++.++.
T Consensus 262 ~~li~~~~l~~mk~gailIN~aR 284 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTAR 284 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSC
T ss_pred HHHhhHHHHhhCCCCCEEEECCC
Confidence 223 467788999999998864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0049 Score=54.32 Aligned_cols=88 Identities=19% Similarity=0.225 Sum_probs=64.0
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+ ..++....|+|+.|+.....+...
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---~~~~~~~aDvvi~~vp~~~~~~~v 74 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEEL-AALGAERA---AT---PCEVVESCPVTFAMLADPAAAEEV 74 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-HHTTCEEC---SS---HHHHHHHCSEEEECCSSHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCeec---CC---HHHHHhcCCEEEEEcCCHHHHHHH
Confidence 478999999999999999999999999999999998888 55565321 22 122233579999999865435444
Q ss_pred H-------hccccCCEEEEecC
Q 018246 265 L-------GLLKVNGKLVTVGL 279 (359)
Q Consensus 265 ~-------~~l~~~G~~v~~g~ 279 (359)
+ ..++++..++.++.
T Consensus 75 ~~~~~~l~~~l~~~~~vi~~st 96 (287)
T 3pef_A 75 CFGKHGVLEGIGEGRGYVDMST 96 (287)
T ss_dssp HHSTTCHHHHCCTTCEEEECSC
T ss_pred HcCcchHhhcCCCCCEEEeCCC
Confidence 4 45667777777643
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0026 Score=55.27 Aligned_cols=97 Identities=22% Similarity=0.370 Sum_probs=73.0
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECCc-hHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHcCCcEEecCCCH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGLG-GLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKLGADAFLVSSDP 238 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~ 238 (359)
..+||....+...+++.+.--.|++++|+|.| .+|..+++++... |++|++..+....
T Consensus 136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~------------------- 196 (281)
T 2c2x_A 136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRD------------------- 196 (281)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSC-------------------
T ss_pred CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhH-------------------
Confidence 45677777777777777643589999999987 4699999999999 8999998655422
Q ss_pred HHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 239 AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 239 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.....|+||.++|.+..+. -+.++++..++++|...
T Consensus 197 --L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~r 235 (281)
T 2c2x_A 197 --LPALTRQADIVVAAVGVAHLLT--ADMVRPGAAVIDVGVSR 235 (281)
T ss_dssp --HHHHHTTCSEEEECSCCTTCBC--GGGSCTTCEEEECCEEE
T ss_pred --HHHHHhhCCEEEECCCCCcccC--HHHcCCCcEEEEccCCC
Confidence 3344457899999999887332 34579999999998754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0039 Score=53.64 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~vid 253 (359)
.+.++.+||-+|+|. |..+..+++..|.+|++++.+++.++.+.+. .|.. .++..+-.+ .. ..+.||+|+.
T Consensus 33 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~V~~ 109 (256)
T 1nkv_A 33 RMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YV-ANEKCDVAAC 109 (256)
T ss_dssp CCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CC-CSSCEEEEEE
T ss_pred CCCCCCEEEEECCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CC-cCCCCCEEEE
Confidence 358999999999876 7788899988899999999999887776332 3321 222111111 11 1347999986
Q ss_pred CC------CChhhHHHHHhccccCCEEEEec
Q 018246 254 TV------SAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 254 ~~------g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
.. .-...+..+.+.|+|+|+++...
T Consensus 110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 110 VGATWIAGGFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence 22 22335788999999999998763
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.013 Score=52.12 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=65.9
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|....... ..++....|+|+.|+.....+...
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~~-----~~e~~~~aDvvi~~vp~~~~~~~v 81 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANL-LAEGACGAAAS-----AREFAGVVDALVILVVNAAQVRQV 81 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEESS-----STTTTTTCSEEEECCSSHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHcCCccccCC-----HHHHHhcCCEEEEECCCHHHHHHH
Confidence 579999999999999999999999999999999998888 56676542211 112335789999999986435554
Q ss_pred H-------hccccCCEEEEecC
Q 018246 265 L-------GLLKVNGKLVTVGL 279 (359)
Q Consensus 265 ~-------~~l~~~G~~v~~g~ 279 (359)
+ ..++++..++.++.
T Consensus 82 ~~~~~~l~~~l~~g~ivv~~st 103 (303)
T 3g0o_A 82 LFGEDGVAHLMKPGSAVMVSST 103 (303)
T ss_dssp HC--CCCGGGSCTTCEEEECSC
T ss_pred HhChhhHHhhCCCCCEEEecCC
Confidence 3 45566677776654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=52.86 Aligned_cols=97 Identities=16% Similarity=0.067 Sum_probs=68.0
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---cEEecCCCHHHHHHhcCCccEEEECCC
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---DAFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.+.++++||-+|+|. |..+..+++.. .+|++++.+++..+.+.+.+.. -.++..+..+.. ...+.+|+|+....
T Consensus 67 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 143 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWAT 143 (231)
T ss_dssp TCCTTCEEEEECCTT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSB
T ss_pred CCCCCCEEEEEcCCC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCc
Confidence 347899999999886 88888888774 8999999999988888554431 122222211101 11247999998766
Q ss_pred ChhhHHHHHhccccCCEEEEecC
Q 018246 257 AVHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 257 ~~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
-......+.+.|+++|+++..-.
T Consensus 144 ~~~~~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 144 APTLLCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp BSSCCHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEc
Confidence 55556788999999999987744
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0033 Score=55.01 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred EEEEECC-chHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCCh---
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAV--- 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~--- 258 (359)
+|||.|+ |.+|...++.+... |.+|+++++++++.+.+ ...+...+ .|..+.+.+.++..++|+||.+++..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~ 79 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL-AAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQ 79 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhh-hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchH
Confidence 4889987 99999999988887 89999999988776555 34455433 35666777777778999999998742
Q ss_pred --hhHHHHHhcccc-C-CEEEEecCC
Q 018246 259 --HSLAPLLGLLKV-N-GKLVTVGLP 280 (359)
Q Consensus 259 --~~~~~~~~~l~~-~-G~~v~~g~~ 280 (359)
.....+++.++. + ++++.++..
T Consensus 80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 80 RAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp --CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 112344444433 2 588887653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.006 Score=51.53 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=67.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCC---cEEecCCCHHHHHHhc-----CCc
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGA---DAFLVSSDPAKVKAAM-----GTM 248 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~---~~v~~~~~~~~~~~~~-----~~~ 248 (359)
.++++||-+|+| .|..+..+++.. +.+|+.++.+++..+.+.+. .|. -.++..+..+.+..+. +.+
T Consensus 68 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 68 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 567899999987 688889999876 46999999999887777433 243 1233222223333332 579
Q ss_pred cEEEECCCCh---hhHHHHHhccccCCEEEEec
Q 018246 249 DYIIDTVSAV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 249 d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
|+|+...... ..+..+.+.|+++|.++...
T Consensus 147 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 147 DVAVVDADKENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9998655432 34788899999999998864
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0035 Score=54.24 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=53.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC------------Cc-EEecCCCHHHHHHhc---
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG------------AD-AFLVSSDPAKVKAAM--- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g------------~~-~v~~~~~~~~~~~~~--- 245 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++. .. ...|..+.+.+.++.
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 85 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV 85 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence 4678999986 999999999999999999999999888776644431 11 123455554433332
Q ss_pred ----CCc-cEEEECCCC
Q 018246 246 ----GTM-DYIIDTVSA 257 (359)
Q Consensus 246 ----~~~-d~vid~~g~ 257 (359)
+++ |++|+++|.
T Consensus 86 ~~~~g~i~d~vi~~Ag~ 102 (264)
T 2pd6_A 86 QACFSRPPSVVVSCAGI 102 (264)
T ss_dssp HHHHSSCCSEEEECCCC
T ss_pred HHHhCCCCeEEEECCCc
Confidence 356 999999873
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0044 Score=53.83 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=55.5
Q ss_pred CCCEEEEECC-c-hHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---C-Cc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-G-GLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---G-AD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g-~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g-~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ | ++|...++.+...|++|+++++++++.+.+.+++ + .. ...|..+.+.+.++ .+
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 100 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG 100 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 5789999987 6 7999999999999999999999998877665544 2 11 22355555444333 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
.+|++++++|.
T Consensus 101 ~id~li~~Ag~ 111 (266)
T 3o38_A 101 RLDVLVNNAGL 111 (266)
T ss_dssp CCCEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 89999999984
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0046 Score=54.74 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=54.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.+.+..+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++ .+.
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 104 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH 104 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 5678999986 99999999999999999999999988776554433 432 12355555443333 247
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|++|+++|
T Consensus 105 id~li~~Ag 113 (302)
T 1w6u_A 105 PNIVINNAA 113 (302)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCC
Confidence 899999998
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0022 Score=58.46 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=54.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
-.|++|+|.|.|.+|..+++.+...|++|++.++++++.+.+.+++|++.+ +.. . .+....|+++-|....
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~---~--ll~~~~DIvip~a~~~ 241 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APN---A--IYGVTCDIFAPCALGA 241 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGG---G--TTTCCCSEEEECSCSC
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChH---H--HhccCCcEeeccchHH
Confidence 478999999999999999999999999999999999988877677786543 111 1 0113678877766543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0048 Score=54.24 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=53.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE----EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA----FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~----v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++.+.+.++ .+... ..|..+.+.+.++ .++
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 106 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG 106 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999986 9999999999999999999999998877665332 34321 2355554433332 248
Q ss_pred ccEEEEC-CC
Q 018246 248 MDYIIDT-VS 256 (359)
Q Consensus 248 ~d~vid~-~g 256 (359)
+|++|++ .|
T Consensus 107 iD~li~naag 116 (286)
T 1xu9_A 107 LDMLILNHIT 116 (286)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCcc
Confidence 9999998 44
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0027 Score=57.63 Aligned_cols=88 Identities=23% Similarity=0.307 Sum_probs=66.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|++|.|+|.|.+|...++.++.+|.+|++.+++... +.+ .+.|+..+ .+ +.++....|+|+.++....
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~~---~~---l~ell~~aDiV~l~~Plt~~t~ 230 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-RADGFAVA---ES---KDALFEQSDVLSVHLRLNDETR 230 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-HHTTCEEC---SS---HHHHHHHCSEEEECCCCSTTTT
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-HhcCceEe---CC---HHHHHhhCCEEEEeccCcHHHH
Confidence 5889999999999999999999999999999987533 334 56676432 12 2334446899998876321
Q ss_pred --hHHHHHhccccCCEEEEec
Q 018246 260 --SLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 --~~~~~~~~l~~~G~~v~~g 278 (359)
.-...+..|+++..+|.++
T Consensus 231 ~li~~~~l~~mk~gailIN~a 251 (352)
T 3gg9_A 231 SIITVADLTRMKPTALFVNTS 251 (352)
T ss_dssp TCBCHHHHTTSCTTCEEEECS
T ss_pred HhhCHHHHhhCCCCcEEEECC
Confidence 1246788999999999997
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.003 Score=56.83 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=55.5
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----C--CcEE--ecCCCHHHHHHhcCCccEEE
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----G--ADAF--LVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g--~~~v--~~~~~~~~~~~~~~~~d~vi 252 (359)
-++.+|||.|+ |.+|..++..+...|.+|++++++.++.+.+.+.+ + ...+ .|..+.+.+.++..++|+||
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 45789999987 99999999999889999999999887765442221 2 2222 24454444555556899999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
.+++.
T Consensus 89 h~A~~ 93 (342)
T 1y1p_A 89 HIASV 93 (342)
T ss_dssp ECCCC
T ss_pred EeCCC
Confidence 99874
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0068 Score=51.87 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---C--CcEE--ecC--CCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---G--ADAF--LVS--SDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g--~~~v--~~~--~~~~~~~~~-------~ 245 (359)
.++++||.|+ |++|...++.+...|++|+++++++++.+.+.+++ + ...+ ++. .+.+.+.++ .
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 92 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF 92 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence 5789999986 99999999999999999999999998876654432 2 1122 233 444333332 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 93 g~id~lv~nAg~ 104 (247)
T 3i1j_A 93 GRLDGLLHNASI 104 (247)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 489999999884
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.037 Score=49.63 Aligned_cols=128 Identities=12% Similarity=0.142 Sum_probs=84.0
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|.. +.+.+.+.. ...+|+|+.|+....-.+.
T Consensus 5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~----~~~~~~~l~-~~~~D~V~i~tp~~~h~~~ 79 (331)
T 4hkt_A 5 RFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE----VRTIDAIEA-AADIDAVVICTPTDTHADL 79 (331)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE----ECCHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred EEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC----cCCHHHHhc-CCCCCEEEEeCCchhHHHH
Confidence 688999999999888877765 67766 5778888888777788875 233222211 2379999999987765677
Q ss_pred HHhccccCCEEEEecCCCCCeeeCHHH------H-HhcCcEEE-EeecCCHHHHHHHHHHHHhCCCc
Q 018246 264 LLGLLKVNGKLVTVGLPEKPLEVPIFA------L-VGARRLVG-GSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~~~~~~~~~------~-~~k~~~i~-g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+..+++.+-. |++.-+ +..+... . -.++..+. ++.......+..+.+++++|.+-
T Consensus 80 ~~~al~~gk~-v~~EKP---~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG 142 (331)
T 4hkt_A 80 IERFARAGKA-IFCEKP---IDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIG 142 (331)
T ss_dssp HHHHHHTTCE-EEECSC---SCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHcCCc-EEEecC---CCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCC
Confidence 7777777654 455322 2222221 1 12344443 44443346688999999999884
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0088 Score=52.41 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=64.8
Q ss_pred EEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcC-CccEEEECCCChhh-
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMG-TMDYIIDTVSAVHS- 260 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~-~~d~vid~~g~~~~- 260 (359)
+|.|+|+|.+|.+.++.++..|. +|++.++++++.+.+ ++.|.. ... .+ ..+... ..|+|+.|+.....
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-~~~g~~~~~~--~~---~~~~~~~~aDvVilavp~~~~~ 76 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGT--TS---IAKVEDFSPDFVMLSSPVRTFR 76 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEE--SC---GGGGGGTCCSEEEECSCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-HHCCCccccc--CC---HHHHhcCCCCEEEEcCCHHHHH
Confidence 68999999999999999999997 999999999988877 677753 222 11 123345 78999999987652
Q ss_pred --HHHHHhccccCCEEEEecCC
Q 018246 261 --LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 261 --~~~~~~~l~~~G~~v~~g~~ 280 (359)
+......++++..++.++..
T Consensus 77 ~v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 77 EIAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp HHHHHHHHHSCTTCEEEECCSC
T ss_pred HHHHHHHhhCCCCcEEEECCCC
Confidence 23344456777777776543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0045 Score=52.54 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCC-c--EEe--cCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGA-D--AFL--VSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~-~--~v~--~~~~~~~~~~~~~~~d~vid~ 254 (359)
++++++||-+|+|. |..+..+++..| .+|++++.+++..+.+.+.... . ..+ +..+..........+|+|+..
T Consensus 72 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (230)
T 1fbn_A 72 IKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred CCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence 47899999999886 888889999887 5999999999888777433221 1 111 111111001112479999976
Q ss_pred CCCh---h-hHHHHHhccccCCEEEEe
Q 018246 255 VSAV---H-SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~~---~-~~~~~~~~l~~~G~~v~~ 277 (359)
.... . .+..+.+.|+|+|+++..
T Consensus 151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 VAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 6554 3 378888999999999885
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0027 Score=56.99 Aligned_cols=90 Identities=14% Similarity=0.258 Sum_probs=67.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 259 (359)
-.|.+|.|+|.|.+|...++.++..|.+|++.++ ++++ ..+ .++|+.. . .+ +.++....|+|+.++....
T Consensus 144 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~g~~~-~--~~---l~ell~~aDvVil~~p~~~~ 215 (320)
T 1gdh_A 144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDE-ASYQATF-H--DS---LDSLLSVSQFFSLNAPSTPE 215 (320)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHH-HHHTCEE-C--SS---HHHHHHHCSEEEECCCCCTT
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhh-hhcCcEE-c--CC---HHHHHhhCCEEEEeccCchH
Confidence 4688999999999999999999999999999998 7765 334 5677643 1 12 2333446899999887432
Q ss_pred ---hH-HHHHhccccCCEEEEecC
Q 018246 260 ---SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 ---~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|++++.++.++.
T Consensus 216 t~~~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 216 TRYFFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSC
T ss_pred HHhhcCHHHHhhCCCCcEEEECCC
Confidence 22 456788999999998865
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0034 Score=51.97 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=44.8
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc---CCccEEEECCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM---GTMDYIIDTVS 256 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid~~g 256 (359)
++||.|+ |.+|...++.+. .|++|++++++++ ....|..+.+.+.++. +++|+++.++|
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag 67 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQVGKVDAIVSATG 67 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHHCCEEEEEECCC
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHhCCCCEEEECCC
Confidence 6999986 999999999888 8999999998764 1234555555444433 36899999887
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0093 Score=50.34 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=65.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc----EEecCCCHHHHHHh-cCCccEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD----AFLVSSDPAKVKAA-MGTMDYI 251 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~----~v~~~~~~~~~~~~-~~~~d~v 251 (359)
+++.+||-+|+|. |..+..+|+.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+..+ .+.||+|
T Consensus 55 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 55 NGSTGAIAITPAA-GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV 133 (221)
T ss_dssp TTCCEEEEESTTH-HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred CCCCCEEEEcCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence 5566999898864 77888888876 57999999999887766433 3432 22222222333333 3589999
Q ss_pred EECCCCh---hhHHHHHhccccCCEEEEec
Q 018246 252 IDTVSAV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 252 id~~g~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
|-..... ..++.+.+.|+|||.++.-.
T Consensus 134 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 134 FGQVSPMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp EECCCTTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 8654432 24678899999999998753
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0059 Score=53.04 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=50.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|..+++.+...|++|+++++++++ ..... ...|..+.+.+.++ .+++|++++
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~ 80 (264)
T 2dtx_A 7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN 80 (264)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999986 999999999999999999999988655 11122 22355555444333 247999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 81 ~Ag~ 84 (264)
T 2dtx_A 81 NAGI 84 (264)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9884
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0059 Score=52.52 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=66.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhcC--CccEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAMG--TMDYI 251 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~--~~d~v 251 (359)
.++.+||-+|+|. |..+..+|+.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+..... .||+|
T Consensus 62 ~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 62 TQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred cCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 5678999999875 77888888887 46999999999988777433 3432 2332222233444433 79999
Q ss_pred EECCCCh---hhHHHHHhccccCCEEEEecC
Q 018246 252 IDTVSAV---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 252 id~~g~~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+-..... ..+..+.+.|+|+|.++.-..
T Consensus 141 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 141 FIDADKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp EECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 8544332 357788999999999887543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0052 Score=53.97 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC---cEEecCCCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA---DAFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~~~~~~~d~vid 253 (359)
.+.++.+||-+|+|. |..+..+++..|.+|++++.+++..+.+.+.. |. -.++.. +. ..+.+.+|+|+.
T Consensus 61 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~---~~~~~~fD~v~~ 135 (287)
T 1kpg_A 61 GLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-GW---EQFDEPVDRIVS 135 (287)
T ss_dssp TCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-CG---GGCCCCCSEEEE
T ss_pred CCCCcCEEEEECCcc-cHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-Ch---hhCCCCeeEEEE
Confidence 357899999999876 77888888777999999999999887774432 21 122211 11 122267999986
Q ss_pred C-----CCC---hhhHHHHHhccccCCEEEEec
Q 018246 254 T-----VSA---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 254 ~-----~g~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
. .+. ...+..+.+.|+|+|+++...
T Consensus 136 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 136 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred eCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5 221 235788899999999998764
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0059 Score=52.86 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh--------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA--------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~--------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++ .+.
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~ 83 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR 83 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4678999986 99999999999999999999999988776554433 432 12355554433322 357
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|++++++|
T Consensus 84 id~lvnnAg 92 (260)
T 2qq5_A 84 LDVLVNNAY 92 (260)
T ss_dssp CCEEEECCC
T ss_pred ceEEEECCc
Confidence 899999994
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0079 Score=52.04 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=54.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAISK---LGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.+.++.+...|++|+++ ++++++.+.+.++ .+... ..|-.+.+.+.++ .++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR 82 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5788999986 999999999999999999986 8888776655443 34322 2355555444333 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 83 id~lv~nAg~ 92 (258)
T 3oid_A 83 LDVFVNNAAS 92 (258)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999973
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0069 Score=52.22 Aligned_cols=73 Identities=18% Similarity=0.095 Sum_probs=50.5
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH--HHcCCc-EEecCCCHH-HHHH---hcCCccEEEECCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI--SKLGAD-AFLVSSDPA-KVKA---AMGTMDYIIDTVS 256 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~--~~~g~~-~v~~~~~~~-~~~~---~~~~~d~vid~~g 256 (359)
+++||.|+ |++|.++++.+...|++|+++++++++.+.+. +..+.+ ..++..+.. .+++ ..+++|++++++|
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nAg 81 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI 81 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 36889886 99999999999999999999999887765542 223432 223433322 2222 2358999999987
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 82 ~ 82 (254)
T 1zmt_A 82 F 82 (254)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0035 Score=53.79 Aligned_cols=73 Identities=19% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEE-e--CChhhHHHHHHHc-CCcEEecCCCH-HHHHHh---cCCccEEEEC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-S--TSPKKESEAISKL-GADAFLVSSDP-AKVKAA---MGTMDYIIDT 254 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~--~~~~~~~~~~~~~-g~~~v~~~~~~-~~~~~~---~~~~d~vid~ 254 (359)
++++||.|+ |++|.++++.+...|++|+++ + +++++.+.+.+++ +. .+.+..+. ..++++ .+++|+++++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~g~iD~lv~~ 79 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKPERLVDATLQHGEAIDTIVSN 79 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCGGGHHHHHGGGSSCEEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 467899886 999999999999999999999 6 9988887775665 32 23344432 223333 2479999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 80 Ag~ 82 (244)
T 1zmo_A 80 DYI 82 (244)
T ss_dssp CCC
T ss_pred CCc
Confidence 873
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0079 Score=52.77 Aligned_cols=75 Identities=12% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHHHc----CCcE-E--ecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAISKL----GADA-F--LVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~~~----g~~~-v--~~~~~~~~~~~~-------~~ 246 (359)
.++++||.|+ |++|.+.++.+...|++|+++++ ++++.+.+.+++ +... . .|..+.+.+.++ .+
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 103 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG 103 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 4678999986 99999999999999999999998 555554443332 3221 1 345555443333 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 104 ~iD~lv~nAg~ 114 (281)
T 3v2h_A 104 GADILVNNAGV 114 (281)
T ss_dssp SCSEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999999884
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0065 Score=54.20 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=64.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
-.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+. .++....|+||.|+..+..+..
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~~---~~~---~~~~~~aDvvi~~vp~~~~~~~ 93 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDEL-VEHGASVC---ESP---AEVIKKCKYTIAMLSDPCAALS 93 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-HHTTCEEC---SSH---HHHHHHCSEEEECCSSHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCeEc---CCH---HHHHHhCCEEEEEcCCHHHHHH
Confidence 3579999999999999999999999999999999998888 56675421 221 2223357999999987643554
Q ss_pred HH-------hccccCCEEEEecC
Q 018246 264 LL-------GLLKVNGKLVTVGL 279 (359)
Q Consensus 264 ~~-------~~l~~~G~~v~~g~ 279 (359)
.+ ..++++..++.++.
T Consensus 94 v~~~~~~l~~~l~~g~~vv~~st 116 (310)
T 3doj_A 94 VVFDKGGVLEQICEGKGYIDMST 116 (310)
T ss_dssp HHHSTTCGGGGCCTTCEEEECSC
T ss_pred HHhCchhhhhccCCCCEEEECCC
Confidence 44 34566667777654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00077 Score=55.59 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=63.2
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCC----------CeEEEEeCChhhHHHHHHHcCCcEEe-cC--CCHHH---
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG----------LKVTVISTSPKKESEAISKLGADAFL-VS--SDPAK--- 240 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g----------~~V~~v~~~~~~~~~~~~~~g~~~v~-~~--~~~~~--- 240 (359)
....++++++||.+|+|+ |..+..+++..| .+|++++.++.+. .-++. .+ .. .+...
T Consensus 16 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~-~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 16 RHQILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGAT-FLCPADVTDPRTSQR 88 (196)
T ss_dssp HHCCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCE-EECSCCTTSHHHHHH
T ss_pred hcCCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCe-EEEeccCCCHHHHHH
Confidence 344568899999999988 999999999876 6899999887431 01122 22 11 22211
Q ss_pred HHHh-c-CCccEEEE-----CCCCh------------hhHHHHHhccccCCEEEEecC
Q 018246 241 VKAA-M-GTMDYIID-----TVSAV------------HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 241 ~~~~-~-~~~d~vid-----~~g~~------------~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+... . ..+|+|+. +++.. ..+..+.+.|+|+|+++..-.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 1111 2 37999995 33321 346778999999999987643
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0049 Score=53.91 Aligned_cols=74 Identities=26% Similarity=0.372 Sum_probs=52.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH---HHcCCc---EEecCCCHHHHHHhc-------CCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI---SKLGAD---AFLVSSDPAKVKAAM-------GTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~~-------~~~ 248 (359)
.++++||.|+ |++|...+..+...|++|+++++++++.+.+. +..+.. ...|..+.+.+.++. +.+
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 112 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI 112 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4678999986 99999999888888999999999877654442 223432 123555554443332 469
Q ss_pred cEEEECCC
Q 018246 249 DYIIDTVS 256 (359)
Q Consensus 249 d~vid~~g 256 (359)
|++|+++|
T Consensus 113 d~li~~Ag 120 (279)
T 3ctm_A 113 DVFVANAG 120 (279)
T ss_dssp SEEEECGG
T ss_pred CEEEECCc
Confidence 99999886
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.025 Score=51.08 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=83.4
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEECCCChhhH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMG--TMDYIIDTVSAVHSL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~~~~ 261 (359)
+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|.. ++ .+ ..++.. .+|+|+.|+....-.
T Consensus 6 rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~-~~--~~---~~~~l~~~~~D~V~i~tp~~~h~ 79 (344)
T 3euw_A 6 RIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAE-AV--AS---PDEVFARDDIDGIVIGSPTSTHV 79 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCE-EE--SS---HHHHTTCSCCCEEEECSCGGGHH
T ss_pred EEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCc-ee--CC---HHHHhcCCCCCEEEEeCCchhhH
Confidence 688999999999888877766 66766 5778888887776788843 32 22 233433 799999999887656
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHH------HH-hcCcEE-EEeecCCHHHHHHHHHHHHhCCCc
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFA------LV-GARRLV-GGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~------~~-~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+.+..+++.+-. |++.-+ +..+... .. .++..+ .++.......+..+.+++++|.+-
T Consensus 80 ~~~~~al~~gk~-v~~EKP---~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG 144 (344)
T 3euw_A 80 DLITRAVERGIP-ALCEKP---IDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIG 144 (344)
T ss_dssp HHHHHHHHTTCC-EEECSC---SCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHcCCc-EEEECC---CCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCC
Confidence 777777777655 444322 2222221 11 223333 344444446688899999999884
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0051 Score=53.81 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC------------hhhHHHHH---HHcCCcE---EecCCCHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS------------PKKESEAI---SKLGADA---FLVSSDPAKVKA 243 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~------------~~~~~~~~---~~~g~~~---v~~~~~~~~~~~ 243 (359)
.|+++||.|+ |++|.++++.+...|++|++++++ +++.+... +..+... ..|..+.+.+.+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 91 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA 91 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 5789999986 999999999999999999999987 44444332 2334332 235555544443
Q ss_pred hc-------CCccEEEECCCC
Q 018246 244 AM-------GTMDYIIDTVSA 257 (359)
Q Consensus 244 ~~-------~~~d~vid~~g~ 257 (359)
+. +++|++++++|.
T Consensus 92 ~~~~~~~~~g~id~lv~nAg~ 112 (278)
T 3sx2_A 92 ALQAGLDELGRLDIVVANAGI 112 (278)
T ss_dssp HHHHHHHHHCCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 32 489999999984
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0054 Score=54.26 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=63.1
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLL 265 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~ 265 (359)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+ ++.|... ..+. .+.....|+|+.|+..+..+...+
T Consensus 7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~---~~~~---~~~~~~~D~vi~~v~~~~~~~~~~ 79 (299)
T 1vpd_A 7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-IAAGAET---ASTA---KAIAEQCDVIITMLPNSPHVKEVA 79 (299)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEE---CSSH---HHHHHHCSEEEECCSSHHHHHHHH
T ss_pred eEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-HHCCCee---cCCH---HHHHhCCCEEEEECCCHHHHHHHH
Confidence 69999999999999998888899999999999988877 4556432 2222 122235899999999654345444
Q ss_pred -------hccccCCEEEEecC
Q 018246 266 -------GLLKVNGKLVTVGL 279 (359)
Q Consensus 266 -------~~l~~~G~~v~~g~ 279 (359)
..++++..++.++.
T Consensus 80 ~~~~~l~~~l~~~~~vv~~s~ 100 (299)
T 1vpd_A 80 LGENGIIEGAKPGTVLIDMSS 100 (299)
T ss_dssp HSTTCHHHHCCTTCEEEECSC
T ss_pred hCcchHhhcCCCCCEEEECCC
Confidence 45677777777643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0035 Score=55.61 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--------CCc---EEecCCCHHHHHHhc-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--------GAD---AFLVSSDPAKVKAAM----- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--------g~~---~v~~~~~~~~~~~~~----- 245 (359)
.+++|||.|+ |++|..+++.+...|++|+++++++++.+.+.+++ +.. ...|..+.+.+.++.
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 96 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD 96 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence 4688999986 99999999999999999999999988766553332 322 123555554443332
Q ss_pred --CCccEEEECCC
Q 018246 246 --GTMDYIIDTVS 256 (359)
Q Consensus 246 --~~~d~vid~~g 256 (359)
+++|++|+++|
T Consensus 97 ~~g~id~li~~Ag 109 (303)
T 1yxm_A 97 TFGKINFLVNNGG 109 (303)
T ss_dssp HHSCCCEEEECCC
T ss_pred HcCCCCEEEECCC
Confidence 47999999998
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0027 Score=57.76 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=74.5
Q ss_pred hhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC----hhh----HHHHHHHcCCcEEec-CC
Q 018246 167 AGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS----PKK----ESEAISKLGADAFLV-SS 236 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~----~~~----~~~~~~~~g~~~v~~-~~ 236 (359)
.+...+.+++..+.--++.+|+|.|+|..|..+++++...|+ +|++++++ .+| ++...+.|... .+ ..
T Consensus 175 ~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~--~~~~~ 252 (388)
T 1vl6_A 175 VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI--TNPER 252 (388)
T ss_dssp HHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT--SCTTC
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHh--hhccC
Confidence 334445555555532467899999999999999999999999 89999998 655 22222222211 01 11
Q ss_pred CHHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 237 DPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 237 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
....+.+...++|++|-+++....-+..++.|+++-.++.+..+.
T Consensus 253 ~~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt 297 (388)
T 1vl6_A 253 LSGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV 297 (388)
T ss_dssp CCSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred chhhHHHHHccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC
Confidence 123355666779999998884333367788898877666665543
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0021 Score=57.91 Aligned_cols=89 Identities=18% Similarity=0.305 Sum_probs=67.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
.|.+|.|+|.|.+|...++.++.+|.+|++.++++...+.+ ..+|+... + +.++....|+|+.++...
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~---l~ell~~aDvV~l~~P~t~~t~ 215 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-QRLGLRQV----A---CSELFASSDFILLALPLNADTL 215 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-HHHTEEEC----C---HHHHHHHCSEEEECCCCSTTTT
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-HhcCceeC----C---HHHHHhhCCEEEEcCCCCHHHH
Confidence 68899999999999999999999999999999987554444 46665321 2 233444689999888632
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|+++..++.++.
T Consensus 216 ~li~~~~l~~mk~gailIN~ar 237 (330)
T 4e5n_A 216 HLVNAELLALVRPGALLVNPCR 237 (330)
T ss_dssp TCBCHHHHTTSCTTEEEEECSC
T ss_pred HHhCHHHHhhCCCCcEEEECCC
Confidence 122 477889999999999864
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.003 Score=54.33 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
.++++||.|+ |++|.++++.+...|++|+++++++++.+.+ . + ...|..+.+.+.++ .+++|+++++
T Consensus 14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ 88 (247)
T 1uzm_A 14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-F--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN 88 (247)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-E--E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHh-c--C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4678999986 9999999999999999999999987654332 1 1 33466665444333 2478999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 89 Ag~ 91 (247)
T 1uzm_A 89 AGL 91 (247)
T ss_dssp CSC
T ss_pred CCC
Confidence 874
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0068 Score=53.25 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC----------------hhhHHHHHHH---cCCc---EEecCCCHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS----------------PKKESEAISK---LGAD---AFLVSSDPA 239 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~----------------~~~~~~~~~~---~g~~---~v~~~~~~~ 239 (359)
.|+++||.|+ +++|.+.++.+...|++|++++++ +++.+.+.+. .+.. ...|..+.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 89 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD 89 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence 5789999986 999999999999999999999886 5555444332 3432 223556654
Q ss_pred HHHHh-------cCCccEEEECCCC
Q 018246 240 KVKAA-------MGTMDYIIDTVSA 257 (359)
Q Consensus 240 ~~~~~-------~~~~d~vid~~g~ 257 (359)
.+.++ .+++|++++++|.
T Consensus 90 ~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 90 ALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcc
Confidence 44433 2489999999884
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0037 Score=53.83 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHH---HcCCcE---EecCCCHHHHHHhc---------
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAIS---KLGADA---FLVSSDPAKVKAAM--------- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~--------- 245 (359)
.++++||.|+ +++|.+.++.+...|++|+++ .++.++.+...+ +.+... ..|..+.+.+..+.
T Consensus 6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (255)
T 3icc_A 6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 85 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhcc
Confidence 5789999986 999999999999999999886 566655544433 233321 13444443333221
Q ss_pred ----CCccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 246 ----GTMDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 246 ----~~~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+|++++++|.. ...+.++..|+++|+++.++...
T Consensus 86 ~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~ 150 (255)
T 3icc_A 86 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA 150 (255)
T ss_dssp HHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred cccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence 2499999998742 01233444566789999987644
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0055 Score=51.14 Aligned_cols=98 Identities=13% Similarity=0.015 Sum_probs=67.1
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEEC
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
....+.++.+||-+|+|. |..+..+++. |.+|++++.+++..+.+ ++.+.. .++..+-.+ . ...+.+|+|+..
T Consensus 40 ~l~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~v~~~D~s~~~~~~a-~~~~~~~~~~~~~d~~~-~-~~~~~~D~v~~~ 114 (218)
T 3ou2_A 40 RLRAGNIRGDVLELASGT-GYWTRHLSGL-ADRVTALDGSAEMIAEA-GRHGLDNVEFRQQDLFD-W-TPDRQWDAVFFA 114 (218)
T ss_dssp HHTTTTSCSEEEEESCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHH-GGGCCTTEEEEECCTTS-C-CCSSCEEEEEEE
T ss_pred HHhcCCCCCeEEEECCCC-CHHHHHHHhc-CCeEEEEeCCHHHHHHH-HhcCCCCeEEEeccccc-C-CCCCceeEEEEe
Confidence 344457888999999875 7777777777 88999999999988888 555522 222221111 1 112479999865
Q ss_pred CCC--------hhhHHHHHhccccCCEEEEecC
Q 018246 255 VSA--------VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 255 ~g~--------~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
..- ...+..+.+.|+|+|.++....
T Consensus 115 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 115 HWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 432 3357788899999999988754
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.032 Score=50.63 Aligned_cols=129 Identities=14% Similarity=0.135 Sum_probs=84.5
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|... +.+.+.+.. ...+|+|+.|+....-.+.
T Consensus 7 ~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~~~~~~~l~-~~~~D~V~i~tp~~~h~~~ 82 (354)
T 3db2_A 7 GVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---DATMEALLA-REDVEMVIITVPNDKHAEV 82 (354)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---CSSHHHHHH-CSSCCEEEECSCTTSHHHH
T ss_pred eEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---cCCHHHHhc-CCCCCEEEEeCChHHHHHH
Confidence 689999999999888877776 67755 56788888887777888653 333222211 2479999999987664677
Q ss_pred HHhccccCCEEEEecCCCCCeeeCHHH------H-HhcCcEE-EEeecCCHHHHHHHHHHHHhCCCc
Q 018246 264 LLGLLKVNGKLVTVGLPEKPLEVPIFA------L-VGARRLV-GGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~~~~~~~~~------~-~~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+..+++.+-. |++.-+ +..+... . -.++..+ .++.......+..+.+++++|.+-
T Consensus 83 ~~~al~~gk~-vl~EKP---~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG 145 (354)
T 3db2_A 83 IEQCARSGKH-IYVEKP---ISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIG 145 (354)
T ss_dssp HHHHHHTTCE-EEEESS---SCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTTC
T ss_pred HHHHHHcCCE-EEEccC---CCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCCC
Confidence 7777777655 444322 2222221 1 1233433 444444446688899999999884
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0076 Score=52.76 Aligned_cols=95 Identities=21% Similarity=0.142 Sum_probs=65.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc-----CC----cEEecCCCHHHHHHhcCCccEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL-----GA----DAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~-----g~----~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+.+||++|+|. |..+..++++.+. +|++++.+++-.+.+.+.+ +. -.++..+..+.+....+.||+|+
T Consensus 75 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 457899998763 5566677777665 9999999998887775444 21 13443444444544445899998
Q ss_pred ECCCC----------hhhHHHHHhccccCCEEEEec
Q 018246 253 DTVSA----------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g~----------~~~~~~~~~~l~~~G~~v~~g 278 (359)
..... ...+..+.+.|+++|.++.-.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 64432 345789999999999998763
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0069 Score=51.78 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=50.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHH---HcCCcE---EecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAIS---KLGADA---FLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|...++.+...|++|+++ .+++++.+.+.+ +.+.+. ..|..+.+.+.++. ++
T Consensus 4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (247)
T 2hq1_A 4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR 83 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4678999986 999999999999999999998 566655544422 234321 23555554444332 48
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 84 ~d~vi~~Ag~ 93 (247)
T 2hq1_A 84 IDILVNNAGI 93 (247)
T ss_dssp CCEEEECC--
T ss_pred CCEEEECCCC
Confidence 9999999874
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0074 Score=51.46 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHHH---cCCc----EEecCCCHHHHHHh-------cCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAISK---LGAD----AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~~---~g~~----~v~~~~~~~~~~~~-------~~~ 247 (359)
++++||.|+ |++|...++.+...|++|+++ ++++++.+.+.++ .+.. ...|..+.+.+.++ .++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 357899886 999999999999999999998 8887776554332 2432 22355555444433 258
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 81 ~d~li~~Ag~ 90 (245)
T 2ph3_A 81 LDTLVNNAGI 90 (245)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999873
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0019 Score=55.23 Aligned_cols=95 Identities=19% Similarity=0.056 Sum_probs=63.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-EEecCCCHHHHHHhc-CCccEE-EECC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-AFLVSSDPAKVKAAM-GTMDYI-IDTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~-~~~d~v-id~~ 255 (359)
.+|.+||-+|+| .|..+..+++..+.+|++++.+++-++.+.+.. +.. .++..+..+....+. ..||.| +|+.
T Consensus 59 ~~G~rVLdiG~G-~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFG-MAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCT-TSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCC-ccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 688999999987 377788888877779999999999888874322 222 233222122222222 368888 4554
Q ss_pred CCh----------hhHHHHHhccccCCEEEEe
Q 018246 256 SAV----------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 256 g~~----------~~~~~~~~~l~~~G~~v~~ 277 (359)
... ..++.+.+.|+|||+++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 321 2456788999999999876
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0056 Score=55.24 Aligned_cols=88 Identities=23% Similarity=0.418 Sum_probs=66.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
-.|.+|.|+|.|.+|...++.++..|.+|++.++++++ +.+ +++|... .+ +.++....|+|+.++....
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~---l~~~l~~aDvVil~vp~~~~t 218 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE-RELNAEF----KP---LEDLLRESDFVVLAVPLTRET 218 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHHCCEE----CC---HHHHHHHCSEEEECCCCCTTT
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH-hhcCccc----CC---HHHHHhhCCEEEECCCCChHH
Confidence 36789999999999999999999999999999998877 444 5667532 12 2233346899999887543
Q ss_pred --hH-HHHHhccccCCEEEEec
Q 018246 260 --SL-APLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g 278 (359)
.+ ...+..|+++..++.++
T Consensus 219 ~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 219 YHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp TTCBCHHHHHHSCTTCEEEECS
T ss_pred HHhhCHHHHhcCCCCcEEEECC
Confidence 23 35677899999888876
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0043 Score=53.04 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=53.4
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHc-CCc---EEecCCCHHHHHHhc-------C--C
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKL-GAD---AFLVSSDPAKVKAAM-------G--T 247 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~-g~~---~v~~~~~~~~~~~~~-------~--~ 247 (359)
++++||.|+ |++|..+++.+...| ++|+++++++++.+.+ ++. +.. ...|..+.+.+.++. + +
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~ 81 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG 81 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH-HhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 578999986 999999999999999 9999999998887666 444 322 223555554443332 2 7
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|.++|.
T Consensus 82 id~li~~Ag~ 91 (250)
T 1yo6_A 82 LSLLINNAGV 91 (250)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCcc
Confidence 9999998873
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0017 Score=55.47 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=61.0
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE--ecCCCHHHHHHh-------c--CCccEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF--LVSSDPAKVKAA-------M--GTMDYI 251 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~--~~~d~v 251 (359)
++++||.|+ |++|.+.++.+...|++|+++++++++.+ +.... .|..+.+.+.++ . +++|++
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l 76 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 76 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence 568999986 99999999999999999999999876532 11111 233333333222 2 479999
Q ss_pred EECCCC--------hh------------------hHHHHHhccccCCEEEEecCCC
Q 018246 252 IDTVSA--------VH------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~--------~~------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++++|. .. ..+.+...|+.+|+++.++...
T Consensus 77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 132 (236)
T 1ooe_A 77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA 132 (236)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence 999983 11 1233445555678999987643
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0026 Score=57.10 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHH-CCC-eEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKA-FGL-KVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~-~g~-~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
....+++|+|+|.+|...+..+.. .+. +|.+.++++++.+.+.++++.. .+. ..+ ..+.. +.|+|+.|+..
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~---~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQP---AEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECC---HHHHT-SSSEEEECCCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECC---HHHHh-CCCEEEEeeCC
Confidence 567799999999999988776655 455 8999999999988886665421 122 222 33445 79999999986
Q ss_pred hh-hHHHHHhccccCCEEEEecCCC
Q 018246 258 VH-SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 258 ~~-~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.. .+. ...++++-.++.+|...
T Consensus 198 ~~pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 198 RKPVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp SSCCBC--GGGCCTTCEEEECSCCS
T ss_pred CCceec--HHHcCCCeEEEECCCCC
Confidence 43 111 25788888888887654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.013 Score=51.21 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=69.0
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
..++...+. ..+.+++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.++++.. .. .. . . ...+|+
T Consensus 108 ~~~l~~~~~-~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~-~~-~----~-~~~~Di 178 (271)
T 1npy_A 108 VKLIEKYHL-NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YI-NS-L----E-NQQADI 178 (271)
T ss_dssp HHHHHHTTC-CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EE-SC-C----T-TCCCSE
T ss_pred HHHHHHhCC-CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cc-hh-h----h-cccCCE
Confidence 334444433 356789999999999999999999998 8999999999988887777752 11 11 0 0 247999
Q ss_pred EEECCCChhh-------HHHHHhccccCCEEEEecC
Q 018246 251 IIDTVSAVHS-------LAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 251 vid~~g~~~~-------~~~~~~~l~~~G~~v~~g~ 279 (359)
|+++++.... .......+.++..++++-.
T Consensus 179 vInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY 214 (271)
T 1npy_A 179 LVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA 214 (271)
T ss_dssp EEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCC
T ss_pred EEECCCCCccCccccCCCCCCHHHcCCCCEEEEeec
Confidence 9999986431 0011245667777777755
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.014 Score=51.19 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=61.4
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc------------CCc---------EEecCCCHHHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL------------GAD---------AFLVSSDPAKVKA 243 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~------------g~~---------~v~~~~~~~~~~~ 243 (359)
++|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.. +.. .+.... ...+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~---~~~~ 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSD---DLAQ 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEES---CHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeC---CHHH
Confidence 5799999999999999999999999999999999887774331 110 000011 1223
Q ss_pred hcCCccEEEECCCChh-----hHHHHHhccccCCEEEEe
Q 018246 244 AMGTMDYIIDTVSAVH-----SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 244 ~~~~~d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~ 277 (359)
...+.|+|++++.... .+..+...++++..++..
T Consensus 82 ~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~ 120 (283)
T 4e12_A 82 AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATN 120 (283)
T ss_dssp HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 3458999999998751 234455556666665544
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.049 Score=49.34 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=84.9
Q ss_pred CEEEEECCchHHHHHHHHHHHC--CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAF--GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~--g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-+|.|+|+|.+|...+...+.. +++++ +.++++++.+.+.+++|+ .++ .+.+.+.. ...+|+|+.|+....-.
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~ 89 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGH--ASLTDMLA-QTDADIVILTTPSGLHP 89 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-EEE--SCHHHHHH-HCCCSEEEECSCGGGHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-cee--CCHHHHhc-CCCCCEEEECCCcHHHH
Confidence 4689999999999888777766 67755 677888888887788887 332 22222111 14799999999877646
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHH------H-HhcCcEE-EEeecCCHHHHHHHHHHHHhCCCcc
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFA------L-VGARRLV-GGSNVGGMKETQEMLDFCAKHNIAA 323 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~------~-~~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~~ 323 (359)
+.+..+++.+-. |++.- ++..+... . -.++..+ .++.......+..+.+++++|.+-.
T Consensus 90 ~~~~~al~~gk~-v~~EK---P~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~ 155 (354)
T 3q2i_A 90 TQSIECSEAGFH-VMTEK---PMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGR 155 (354)
T ss_dssp HHHHHHHHTTCE-EEECS---SSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHCCCC-EEEeC---CCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCCCc
Confidence 677777777654 44432 23333221 1 1234434 4444444466889999999998843
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00096 Score=57.73 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=61.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
.+ +++|+|+|++|.+++..+...|+ +|+++.|++++.+.+.++++. .... .+.+....+|+|+++++...
T Consensus 108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~~---~~~~~~~~aDiVInatp~gm~p 180 (253)
T 3u62_A 108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSLD---QLDEVVKKAKSLFNTTSVGMKG 180 (253)
T ss_dssp CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEGG---GHHHHHHTCSEEEECSSTTTTS
T ss_pred CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCHH---HHHhhhcCCCEEEECCCCCCCC
Confidence 46 89999999999999999999999 999999999887665444332 2222 23334457999999886321
Q ss_pred ---hHHHHHhccccCCEEEEecCC
Q 018246 260 ---SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 ---~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.+. ...++++..++++-..
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC
Confidence 111 2345677777776443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.009 Score=58.44 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=64.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh---------hhHHHHH---HHcCCcEEecCCCHH----HHHHh-
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP---------KKESEAI---SKLGADAFLVSSDPA----KVKAA- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~---------~~~~~~~---~~~g~~~v~~~~~~~----~~~~~- 244 (359)
.|+++||.|+ +++|++.++.+...|++|++.+++. ++.+.+. +..|...+.|..+.+ .++++
T Consensus 7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~ 86 (604)
T 2et6_A 7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV 86 (604)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence 4678899886 8999999999999999999998654 3433332 334555555555432 22222
Q ss_pred --cCCccEEEECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCC
Q 018246 245 --MGTMDYIIDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLP 280 (359)
Q Consensus 245 --~~~~d~vid~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~ 280 (359)
.+.+|++++++|.. ...+.++..|+ .+|++|.++..
T Consensus 87 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ 151 (604)
T 2et6_A 87 KNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSP 151 (604)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence 35899999999841 12234555563 35899998653
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0064 Score=52.61 Aligned_cols=85 Identities=14% Similarity=0.255 Sum_probs=64.1
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLL 265 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~ 265 (359)
+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+++|... ..+. .++....|+|+.|+.... ....+
T Consensus 5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~---~~~~~~~D~Vi~~v~~~~-~~~v~ 77 (259)
T 2ahr_A 5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---AMSH---QDLIDQVDLVILGIKPQL-FETVL 77 (259)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---CSSH---HHHHHTCSEEEECSCGGG-HHHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---eCCH---HHHHhcCCEEEEEeCcHh-HHHHH
Confidence 6899999999999988888888899999999998888756667542 2222 222337899999999544 67777
Q ss_pred hccccCCEEEEe
Q 018246 266 GLLKVNGKLVTV 277 (359)
Q Consensus 266 ~~l~~~G~~v~~ 277 (359)
..++++..++..
T Consensus 78 ~~l~~~~~vv~~ 89 (259)
T 2ahr_A 78 KPLHFKQPIISM 89 (259)
T ss_dssp TTSCCCSCEEEC
T ss_pred HHhccCCEEEEe
Confidence 777766666655
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0077 Score=53.08 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=53.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCC---eEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHhc-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGL---KVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAAM----- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~---~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~~----- 245 (359)
.|+++||.|+ |++|.++++.+...|+ +|+++++++++.+.+.+++ +.. ...|-.+.+.+.++.
T Consensus 32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999986 9999998887776676 9999999998877764443 322 123555554444332
Q ss_pred --CCccEEEECCCC
Q 018246 246 --GTMDYIIDTVSA 257 (359)
Q Consensus 246 --~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 112 ~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 112 EFKDIDILVNNAGK 125 (287)
T ss_dssp GGCSCCEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 379999999883
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.007 Score=53.65 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=53.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC------------hhhHHHHH---HHcCCcE---EecCCCHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS------------PKKESEAI---SKLGADA---FLVSSDPAKVKA 243 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~------------~~~~~~~~---~~~g~~~---v~~~~~~~~~~~ 243 (359)
.|+++||.|+ +++|.++++.+...|++|++++++ +++.+... +..|... ..|..+.+.+.+
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 106 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA 106 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 5789999986 999999999999999999999887 44444432 3345332 235555544443
Q ss_pred h-------cCCccEEEECCCC
Q 018246 244 A-------MGTMDYIIDTVSA 257 (359)
Q Consensus 244 ~-------~~~~d~vid~~g~ 257 (359)
+ .+++|++++++|.
T Consensus 107 ~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 107 AVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 3 2489999999873
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0027 Score=54.40 Aligned_cols=94 Identities=21% Similarity=0.192 Sum_probs=61.7
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE--ecCCCHHHHHHh-------c--CCcc
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF--LVSSDPAKVKAA-------M--GTMD 249 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~--~~~d 249 (359)
..++++||.|+ |++|...++.+...|++|+++++++++.+ +.... .|..+.+.+.++ . +++|
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD 78 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD 78 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 45788999986 99999999999999999999999876532 11111 233333333222 2 4799
Q ss_pred EEEECCCCh--------h------------------hHHHHHhccccCCEEEEecCCC
Q 018246 250 YIIDTVSAV--------H------------------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 250 ~vid~~g~~--------~------------------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++++++|.. . ..+.+...|+.+|+++.++...
T Consensus 79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~ 136 (241)
T 1dhr_A 79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA 136 (241)
T ss_dssp EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence 999998831 0 1123444555678999987643
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.009 Score=50.77 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=66.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-----CCc
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-----GTM 248 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-----~~~ 248 (359)
.++++||-+|+| .|..+..+++.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+..+. +.|
T Consensus 71 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 466789999987 788889999887 46999999999887777433 2432 222222223344442 579
Q ss_pred cEEEECCCCh---hhHHHHHhccccCCEEEEec
Q 018246 249 DYIIDTVSAV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 249 d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
|+|+...... ..++.+.+.|+++|.++.-.
T Consensus 150 D~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 150 DLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred CEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 9998544322 34788899999999998753
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.015 Score=50.74 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=62.9
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEECCCChh---hH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTMDYIIDTVSAVH---SL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~ 261 (359)
+|.|+|+|.+|.+.+..+...|.+|+++++++++.+.+ ++.|.. .+. .+ ..++ .+.|+|+.|+.... .+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~~--~~---~~~~-~~~D~vi~av~~~~~~~~~ 74 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAG--QD---LSLL-QTAKIIFLCTPIQLILPTL 74 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEE--SC---GGGG-TTCSEEEECSCHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HhCCCCcccc--CC---HHHh-CCCCEEEEECCHHHHHHHH
Confidence 58899999999999999988999999999999988887 577753 222 11 2234 67999999999754 22
Q ss_pred HHHHhccccCCEEEEecC
Q 018246 262 APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~ 279 (359)
......++++..++.++.
T Consensus 75 ~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 75 EKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp HHHGGGSCTTCEEEECCS
T ss_pred HHHHhhCCCCCEEEECCC
Confidence 333344566667766643
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0019 Score=55.71 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=58.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc----CCccEEEECCCChh
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIIDTVSAVH 259 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~----~~~d~vid~~g~~~ 259 (359)
+++||.|+ |++|..+++.+...|++|+++++++++.+. ....|..+.+.+.++. +++|++++++|...
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~ 74 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP 74 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------ccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence 36899986 999999999999999999999998754321 0011222223333333 46799999987532
Q ss_pred ------------------hHHHHHhcccc--CCEEEEecCCC
Q 018246 260 ------------------SLAPLLGLLKV--NGKLVTVGLPE 281 (359)
Q Consensus 260 ------------------~~~~~~~~l~~--~G~~v~~g~~~ 281 (359)
..+.+...|.. .|++|.++...
T Consensus 75 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~ 116 (257)
T 1fjh_A 75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA 116 (257)
T ss_dssp TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred CcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence 12344445543 38999987643
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0052 Score=53.92 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=52.4
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~ 246 (359)
-.++++||.|+ |++|.++++.+...|++|+++++ ++++.+.+.+ ..|... ..|..+.+.+.++ .+
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 35788999986 99999999999999999999985 6655544433 334322 2355554333332 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 107 ~iD~lvnnAg~ 117 (280)
T 4da9_A 107 RIDCLVNNAGI 117 (280)
T ss_dssp CCCEEEEECC-
T ss_pred CCCEEEECCCc
Confidence 89999999985
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=51.19 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=52.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC------------hhhHHHHH---HHcCCcE---EecCCCHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS------------PKKESEAI---SKLGADA---FLVSSDPAKVKA 243 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~------------~~~~~~~~---~~~g~~~---v~~~~~~~~~~~ 243 (359)
.|+++||.|+ |++|.++++.+...|++|++++++ .++.+... ++.+... ..|-.+.+.+.+
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 88 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES 88 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 5789999986 999999999999999999999986 33333321 3445332 235555544433
Q ss_pred h-------cCCccEEEECCCC
Q 018246 244 A-------MGTMDYIIDTVSA 257 (359)
Q Consensus 244 ~-------~~~~d~vid~~g~ 257 (359)
+ .+++|++++++|.
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~ 109 (281)
T 3s55_A 89 FVAEAEDTLGGIDIAITNAGI 109 (281)
T ss_dssp HHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 3 2489999999884
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0059 Score=52.75 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=61.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---------------------c-EEecCCCHH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---------------------D-AFLVSSDPA 239 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---------------------~-~v~~~~~~~ 239 (359)
.++.+||.+|+|. |..+..||+. |.+|++++.++.-++.+.++.+. . .++..+ ..
T Consensus 67 ~~~~~vLD~GCG~-G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D-~~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGK-AIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCS-IF 143 (252)
T ss_dssp CCSCEEEETTCTT-CTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESC-TT
T ss_pred CCCCeEEEeCCCC-cHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECc-cc
Confidence 5788999998864 6667777765 99999999999998888555431 1 111111 11
Q ss_pred HHHHhc-CCccEEEECCCC--------hhhHHHHHhccccCCEEEEe
Q 018246 240 KVKAAM-GTMDYIIDTVSA--------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 240 ~~~~~~-~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 277 (359)
.+.... +.||+|++...- ...+..+.+.|+|+|+++++
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 111111 579999974321 12467788999999998644
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0053 Score=54.76 Aligned_cols=101 Identities=22% Similarity=0.234 Sum_probs=67.6
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhcCCcc
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d 249 (359)
.....++++++||-+|+|. |..+..+++..|++|++++.+++..+.+.+. .|.. .++..+- ..+....+.||
T Consensus 110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD 187 (312)
T 3vc1_A 110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDTPFDKGAVT 187 (312)
T ss_dssp TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEE
T ss_pred HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcCCCCCCCEe
Confidence 3344368899999999875 7777888887789999999999887777332 3321 2221111 11110124799
Q ss_pred EEEECC-----CChhhHHHHHhccccCCEEEEec
Q 018246 250 YIIDTV-----SAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 250 ~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
+|+..- +-...+..+.+.|+|+|+++...
T Consensus 188 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 188 ASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 998632 22346789999999999999774
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.014 Score=51.64 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=63.2
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-----hhHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-----KKESEAI--SKLGADAF-LVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-----~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.+|||.|+ |.+|...++.+...|.+|++++|+. ++.+.+. +..++..+ .|..+.+.+.++..++|+||.++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 84 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 84 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECC
Confidence 56999986 9999999999998999999999983 4443331 22344432 35666777777778999999998
Q ss_pred CCh------hhHHHHHhccccC---CEEEE
Q 018246 256 SAV------HSLAPLLGLLKVN---GKLVT 276 (359)
Q Consensus 256 g~~------~~~~~~~~~l~~~---G~~v~ 276 (359)
+.. .....+++.++.. +++|.
T Consensus 85 ~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 85 AGGVLSHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp CCSSSSTTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred ccccchhhHHHHHHHHHHHHhcCCCceEEe
Confidence 753 1233455555443 37763
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0046 Score=56.13 Aligned_cols=91 Identities=18% Similarity=0.350 Sum_probs=67.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHH-HCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGK-AFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~-~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 259 (359)
-.|.+|.|+|.|.+|...++.++ ..|.+|++.++++++.+.+ .++|...+ .+ +.++....|+|+.++....
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvVil~vp~~~~ 233 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-KALGAERV---DS---LEELARRSDCVSVSVPYMKL 233 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-HHHTCEEC---SS---HHHHHHHCSEEEECCCCSGG
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-hhcCcEEe---CC---HHHHhccCCEEEEeCCCChH
Confidence 46889999999999999999999 9999999999987766555 55675432 12 2233346899999886432
Q ss_pred ---hH-HHHHhccccCCEEEEecC
Q 018246 260 ---SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 ---~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..++.++.
T Consensus 234 t~~li~~~~l~~mk~gailin~sr 257 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTAR 257 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSC
T ss_pred HHHHhhHHHHhcCCCCCEEEECCC
Confidence 22 356678888888887754
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0071 Score=55.04 Aligned_cols=87 Identities=16% Similarity=0.354 Sum_probs=66.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|++|.|+|.|.+|...++.++.+|.+|++.+++.. .+.+ ...|+.. .+ +.++....|+|+.++....
T Consensus 175 ~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~-~~~g~~~----~~---l~ell~~aDvV~l~~Plt~~T~ 245 (365)
T 4hy3_A 175 AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSML-EENGVEP----AS---LEDVLTKSDFIFVVAAVTSENK 245 (365)
T ss_dssp SSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHH-HHTTCEE----CC---HHHHHHSCSEEEECSCSSCC--
T ss_pred CCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHH-hhcCeee----CC---HHHHHhcCCEEEEcCcCCHHHH
Confidence 588999999999999999999999999999998753 3333 4667642 12 3445557899998776431
Q ss_pred -hH-HHHHhccccCCEEEEec
Q 018246 260 -SL-APLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g 278 (359)
.+ ...+..|++++.+|.++
T Consensus 246 ~li~~~~l~~mk~gailIN~a 266 (365)
T 4hy3_A 246 RFLGAEAFSSMRRGAAFILLS 266 (365)
T ss_dssp -CCCHHHHHTSCTTCEEEECS
T ss_pred hhcCHHHHhcCCCCcEEEECc
Confidence 12 56788999999999997
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.033 Score=50.27 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=84.0
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|...++ .+.+.+.. ...+|+|+.|+....-.+.
T Consensus 4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~~~ 80 (344)
T 3ezy_A 4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAY--KDPHELIE-DPNVDAVLVCSSTNTHSEL 80 (344)
T ss_dssp EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEE--SSHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCcee--CCHHHHhc-CCCCCEEEEcCCCcchHHH
Confidence 588999999999877776655 56766 5678888888877888876544 22221111 1379999999998765667
Q ss_pred HHhccccCCEEEEecCCCCCeeeCHHH------HH-hcCcEE-EEeecCCHHHHHHHHHHHHhCCCc
Q 018246 264 LLGLLKVNGKLVTVGLPEKPLEVPIFA------LV-GARRLV-GGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~~~~~~~~~------~~-~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+..+++.+-. |++.-+ +..+... +. .++..+ .++.......+..+.+++++|.|-
T Consensus 81 ~~~al~~gk~-v~~EKP---~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG 143 (344)
T 3ezy_A 81 VIACAKAKKH-VFCEKP---LSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVENGTIG 143 (344)
T ss_dssp HHHHHHTTCE-EEEESC---SCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHTTTTS
T ss_pred HHHHHhcCCe-EEEECC---CCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHcCCCC
Confidence 7777777655 444322 2222221 11 234433 444444446688999999999884
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0083 Score=53.06 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-------hhHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-------KKESEAI--SKLGADAF-LVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vi 252 (359)
+.+|||.|+ |.+|...++.+...|.+|++++|++ ++.+.+. +..++..+ .|..+.+.+.++..++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 357999987 9999999998888899999999986 4443331 23455433 46667777777778999999
Q ss_pred ECCCChh--hHHHHHhccccC---CEEE
Q 018246 253 DTVSAVH--SLAPLLGLLKVN---GKLV 275 (359)
Q Consensus 253 d~~g~~~--~~~~~~~~l~~~---G~~v 275 (359)
.+++... ....+++.++.. ++++
T Consensus 82 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 82 CAAGRLLIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp ECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred ECCcccccccHHHHHHHHHhcCCceEEe
Confidence 9988532 133444444432 4666
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0031 Score=54.55 Aligned_cols=72 Identities=26% Similarity=0.302 Sum_probs=50.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh------cCCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA------MGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~------~~~~d~vi 252 (359)
.++++||.|+ |++|.+.++.+...|++|+++++..++.. ++++.. ...|-.+.+.+.++ .+++|+++
T Consensus 8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv 84 (257)
T 3tl3_A 8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---ADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV 84 (257)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---HhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 4688999986 99999999998889999999998655432 455533 22355555444333 24899999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|.
T Consensus 85 ~nAg~ 89 (257)
T 3tl3_A 85 NCAGT 89 (257)
T ss_dssp ECGGG
T ss_pred ECCCC
Confidence 99983
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.007 Score=51.67 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=53.2
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCC-------eEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-----
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGL-------KVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA----- 244 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~-------~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~----- 244 (359)
+++|||.|+ |++|...++.+...|+ +|+++++++++.+.+.+++ +.. ...|..+.+.+.++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 567999986 9999999988888899 9999999988776654443 422 12355555444333
Q ss_pred --cCCccEEEECCCC
Q 018246 245 --MGTMDYIIDTVSA 257 (359)
Q Consensus 245 --~~~~d~vid~~g~ 257 (359)
.+++|++|+++|.
T Consensus 82 ~~~g~id~li~~Ag~ 96 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGV 96 (244)
T ss_dssp HHTSCCSEEEECCCC
T ss_pred HhCCCCCEEEEcCCc
Confidence 2479999999873
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.01 Score=52.04 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCCh--hhHHHHHHHcCCcE--EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSP--KKESEAISKLGADA--FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~--~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ | ++|.++++.+...|++|++++++. +..+.+.++.+.-. ..|..+.+.+.++ .+.+
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 104 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGL 104 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence 5789999884 4 499999999999999999999987 56666644455322 2355555443333 2479
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 105 d~li~nAg~ 113 (280)
T 3nrc_A 105 DAIVHSIAF 113 (280)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCcc
Confidence 999999874
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.044 Score=49.13 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=80.4
Q ss_pred EEEEECCchHHHHH-HHHHHHCCCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCChhhH
Q 018246 186 HLGVAGLGGLGHVA-VKIGKAFGLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAVHSL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a-~~la~~~g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~~~ 261 (359)
+|.|+|+|.+|... +...+..+.+++ +.++++++.+.+.+++|...++ .+. .++. ..+|+|+.++....-.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~--~~~---~~~l~~~~~D~V~i~tp~~~h~ 76 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV--TSV---EELVGDPDVDAVYVSTTNELHR 76 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB--SCH---HHHHTCTTCCEEEECSCGGGHH
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCccc--CCH---HHHhcCCCCCEEEEeCChhHhH
Confidence 58899999999886 644444778765 5688888887776788864322 222 2332 3699999999876646
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHH---H---H-hcCcEEE-EeecCCHHHHHHHHHHHHhCCCc
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFA---L---V-GARRLVG-GSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~---~-~k~~~i~-g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+.+..+++.|-. |.+.- ++..+... + . .++..+. +........+..+.+++++|.+-
T Consensus 77 ~~~~~al~~Gk~-v~~ek---P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~iG 141 (332)
T 2glx_A 77 EQTLAAIRAGKH-VLCEK---PLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIG 141 (332)
T ss_dssp HHHHHHHHTTCE-EEECS---SSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHCCCe-EEEeC---CCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCCC
Confidence 677777777544 44432 22222221 1 1 2344443 34333335588899999999873
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0077 Score=59.08 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=48.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC---------ChhhHHHHH---HHcCCcEEecCCCHHHHHHhc----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST---------SPKKESEAI---SKLGADAFLVSSDPAKVKAAM---- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~---------~~~~~~~~~---~~~g~~~v~~~~~~~~~~~~~---- 245 (359)
.|+++||.|+ +++|.+.+..+...|++|+++++ +.++.+.+. ++.+...+.|..+.+.+.++.
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~ 97 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI 97 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence 5788999886 99999999999999999999876 444444332 344556666766654433332
Q ss_pred ---CCccEEEECCCC
Q 018246 246 ---GTMDYIIDTVSA 257 (359)
Q Consensus 246 ---~~~d~vid~~g~ 257 (359)
+.+|++++++|.
T Consensus 98 ~~~g~iDiLVnnAGi 112 (613)
T 3oml_A 98 KAFGRVDILVNNAGI 112 (613)
T ss_dssp -------CEECCCCC
T ss_pred HHCCCCcEEEECCCC
Confidence 379999999884
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.038 Score=50.09 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=83.7
Q ss_pred CEEEEECCchHHH-HHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCChh
Q 018246 185 KHLGVAGLGGLGH-VAVKIGKAF-GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAVH 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~-~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~ 259 (359)
-+|.|+|+|.+|. ..+..++.. +++++ +.++++++.+.+.+++|.... .+ ..++. ..+|+|+.|+....
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~---~~---~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPV---EG---YPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEE---ES---HHHHHTCTTCSEEEECCCGGG
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCc---CC---HHHHhcCCCCCEEEECCCcHH
Confidence 3689999999998 566666666 67766 567888888887788887654 22 22332 37999999998876
Q ss_pred hHHHHHhccccCCEEEEecCCCCCeeeCHHHH-------HhcCcEE-EEeecCCHHHHHHHHHHHHhCCCc
Q 018246 260 SLAPLLGLLKVNGKLVTVGLPEKPLEVPIFAL-------VGARRLV-GGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-------~~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
-.+.+..+++.|-. |++.- ++..+..+. -.+++.+ .++.......+..+.+++++|.+-
T Consensus 102 h~~~~~~al~aGk~-Vl~EK---P~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG 168 (350)
T 3rc1_A 102 HAEWIDRALRAGKH-VLAEK---PLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVIG 168 (350)
T ss_dssp HHHHHHHHHHTTCE-EEEES---SSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCCc-EEEeC---CCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCCC
Confidence 56777777877655 45532 233332221 1234444 344433345688889999999883
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0092 Score=53.92 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=55.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh----HHHHHHH-------cCCcE-EecCCCHHHHHHhcCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK----ESEAISK-------LGADA-FLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~----~~~~~~~-------~g~~~-v~~~~~~~~~~~~~~~~d 249 (359)
.+.+|||+|+ |.+|...++.+...|.+|++++++... .+.+ +. -+... ..|..+.+.+.++..++|
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEV-KTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHH-HHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhh-hhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 3578999986 999999999999999999999986542 3333 22 12222 235566777777778999
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+||.+++.
T Consensus 103 ~Vih~A~~ 110 (351)
T 3ruf_A 103 HVLHQAAL 110 (351)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99999984
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.017 Score=49.09 Aligned_cols=94 Identities=6% Similarity=0.053 Sum_probs=66.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEECCCChh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAA-MGTMDYIIDTVSAVH 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~ 259 (359)
....+++|+|+|.+|...++.+...|. |+++++++++.+.+ + .|...+. |..+.+.+.+. ..++|.++-+.+...
T Consensus 7 ~~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~-~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (234)
T 2aef_A 7 AKSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL-R-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS 83 (234)
T ss_dssp ---CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH-H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH-h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence 345689999999999999999988899 99999999888777 4 5654433 34555556555 458999999998764
Q ss_pred ---hHHHHHhccccCCEEEEec
Q 018246 260 ---SLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 ---~~~~~~~~l~~~G~~v~~g 278 (359)
......+.+.+..+++.-.
T Consensus 84 ~n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 84 ETIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHHHHHHHHHHHCSSSEEEEEC
T ss_pred HHHHHHHHHHHHCCCCeEEEEE
Confidence 1224455566666666553
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.011 Score=48.00 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC--c-EEecCCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA--D-AFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~--~-~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+.++++||.+|+|. |..+..+++.. .+|++++.+++..+.+.+. .+. . .++..+-.+.+.. .+.+|+|+..
T Consensus 31 ~~~~~~vldiG~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~ 107 (192)
T 1l3i_A 31 PGKNDVAVDVGCGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK-IPDIDIAVVG 107 (192)
T ss_dssp CCTTCEEEEESCTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT-SCCEEEEEES
T ss_pred CCCCCEEEEECCCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc-CCCCCEEEEC
Confidence 47889999999877 88888888766 8999999999887777432 333 1 2222221111111 1479999976
Q ss_pred CCC---hhhHHHHHhccccCCEEEEe
Q 018246 255 VSA---VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~---~~~~~~~~~~l~~~G~~v~~ 277 (359)
... ...+..+.+.|+++|+++..
T Consensus 108 ~~~~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 108 GSGGELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp CCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CchHHHHHHHHHHHHhcCCCcEEEEE
Confidence 542 23567888999999999875
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.014 Score=48.97 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc-----CCc
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM-----GTM 248 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-----~~~ 248 (359)
.++.+||-+|+|. |..+..+++.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+.... +.|
T Consensus 63 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 4678899999875 77888888876 46999999999887776433 3432 233222224444443 679
Q ss_pred cEEEECCCCh---hhHHHHHhccccCCEEEEec
Q 018246 249 DYIIDTVSAV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 249 d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
|+|+-..... ..+..+.+.|+|+|.++.-.
T Consensus 142 D~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 142 DLIYIDADKANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9998554432 24678889999999998753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0029 Score=55.45 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=69.4
Q ss_pred hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEE
Q 018246 173 SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.++...+.--.+.+|+|+|+|.+|.+++..+...|++|++.++++++.+.+.+++|.. +.+ + +.+.....|+|+
T Consensus 118 ~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~-~~~--~---~~~~~~~aDiVi 191 (275)
T 2hk9_A 118 KSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE-VVN--S---PEEVIDKVQVIV 191 (275)
T ss_dssp HHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEE-ECS--C---GGGTGGGCSEEE
T ss_pred HHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCe-eeh--h---HHhhhcCCCEEE
Confidence 3444433223578999999999999999999888999999999998887775666632 221 1 123335799999
Q ss_pred ECCCChhhH---HH-HHhccccCCEEEEecC
Q 018246 253 DTVSAVHSL---AP-LLGLLKVNGKLVTVGL 279 (359)
Q Consensus 253 d~~g~~~~~---~~-~~~~l~~~G~~v~~g~ 279 (359)
.|++....- .. ....++++..+++++.
T Consensus 192 ~atp~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 192 NTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp ECSSTTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred EeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 999865310 01 1345777788888766
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0095 Score=53.37 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=52.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC---------ChhhHHHHHH---HcCCcEEecCCCHHHHHHh-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST---------SPKKESEAIS---KLGADAFLVSSDPAKVKAA----- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~---------~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~----- 244 (359)
.|+++||.|+ |++|..+++.+...|++|+++++ +.++.+.+.+ ..+...+.|..+.+.+.++
T Consensus 8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~ 87 (319)
T 1gz6_A 8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL 87 (319)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 5788999986 99999999999999999999754 5555544323 3344455666654332222
Q ss_pred --cCCccEEEECCCC
Q 018246 245 --MGTMDYIIDTVSA 257 (359)
Q Consensus 245 --~~~~d~vid~~g~ 257 (359)
.+++|++|+++|.
T Consensus 88 ~~~g~iD~lVnnAG~ 102 (319)
T 1gz6_A 88 DTFGRIDVVVNNAGI 102 (319)
T ss_dssp HHTSCCCEEEECCCC
T ss_pred HHcCCCCEEEECCCC
Confidence 3479999999873
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.003 Score=55.06 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=49.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
.|+++||.|+ |++|.++++.+...|++|++++++.++.+.. .. ...|..+.+.+.++ .+++|+++++
T Consensus 27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~-~~----~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnn 101 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD-LH----LPGDLREAAYADGLPGAVAAGLGRLDIVVNN 101 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS-EE----CCCCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh-hc----cCcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 5788999986 9999999999999999999999886553221 00 01233444333222 2589999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 102 Ag~ 104 (266)
T 3uxy_A 102 AGV 104 (266)
T ss_dssp CCC
T ss_pred CCC
Confidence 884
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.041 Score=50.00 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---h
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH---S 260 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~ 260 (359)
..+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|... ..+...+.+-...+|+|+-++.... +
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l-~~~g~~~---~~s~~e~~~~a~~~DvVi~~vp~~~v~~v 97 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQAL-EREGIAG---ARSIEEFCAKLVKPRVVWLMVPAAVVDSM 97 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HTTTCBC---CSSHHHHHHHSCSSCEEEECSCGGGHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-HHCCCEE---eCCHHHHHhcCCCCCEEEEeCCHHHHHHH
Confidence 4579999999999999999999999999999999998887 5556432 2222222222235699999998763 2
Q ss_pred HHHHHhccccCCEEEEecCC
Q 018246 261 LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~~ 280 (359)
+..+...++++..+++++..
T Consensus 98 l~~l~~~l~~g~iiId~st~ 117 (358)
T 4e21_A 98 LQRMTPLLAANDIVIDGGNS 117 (358)
T ss_dssp HHHHGGGCCTTCEEEECSSC
T ss_pred HHHHHhhCCCCCEEEeCCCC
Confidence 23444556667777776543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=53.11 Aligned_cols=89 Identities=17% Similarity=0.304 Sum_probs=66.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
.|.+|.|+|.|.+|...++.++..|.+|++.++++++.+.+ .++|.... + +.++....|+|+.++...
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~---l~e~l~~aDvVi~~vp~~~~t~ 225 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFV----S---TPELAAQSDFIVVACSLTPATE 225 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEEC----C---HHHHHHHCSEEEECCCCCTTTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeC----C---HHHHHhhCCEEEEeCCCChHHH
Confidence 57899999999999999999999999999999887766555 55665432 2 222334689999988743
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|+++..++.++.
T Consensus 226 ~~i~~~~~~~mk~gailIn~sr 247 (330)
T 2gcg_A 226 GLCNKDFFQKMKETAVFINISR 247 (330)
T ss_dssp TCBSHHHHHHSCTTCEEEECSC
T ss_pred HhhCHHHHhcCCCCcEEEECCC
Confidence 222 456778888888887754
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.016 Score=52.27 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=65.2
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
.+|.|+|.|.+|.+.+..++..|.+|++.++++++.+.+ ++.|+... .+..+.+.....+.|+|+-|+.... +...
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-~~~G~~~~--~~~~e~~~~a~~~aDlVilavP~~~-~~~v 84 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-VDEGFDVS--ADLEATLQRAAAEDALIVLAVPMTA-IDSL 84 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-HHTTCCEE--SCHHHHHHHHHHTTCEEEECSCHHH-HHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeee--CCHHHHHHhcccCCCEEEEeCCHHH-HHHH
Confidence 569999999999999999999999999999999988887 77887532 1112223333336799999998654 3333
Q ss_pred Hh---ccccCCEEEEecCC
Q 018246 265 LG---LLKVNGKLVTVGLP 280 (359)
Q Consensus 265 ~~---~l~~~G~~v~~g~~ 280 (359)
++ .++++..+++++..
T Consensus 85 l~~l~~~~~~~iv~Dv~Sv 103 (341)
T 3ktd_A 85 LDAVHTHAPNNGFTDVVSV 103 (341)
T ss_dssp HHHHHHHCTTCCEEECCSC
T ss_pred HHHHHccCCCCEEEEcCCC
Confidence 32 23566666677554
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.007 Score=54.43 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=53.3
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
-+|||.|+ |.+|...++.+...|.+|+++++++++.+.+ ...+...+ .|..+.+.+.++..++|+||.+++.
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~ 87 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL-AYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY 87 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG-GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh-ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence 37999986 9999999999999999999999987765433 23344332 3556667777777899999999874
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.014 Score=52.93 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=61.0
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC---------CCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS---------SDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~---------~~~~~~~~~~~~~d~vid~~ 255 (359)
.+|.|+|+|.+|...+..+...|.+|+++++++++.+.+.+..+. .+... ...+...+....+|+|+.|+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v 83 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAI-IAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 83 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSE-EEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCe-EEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence 479999999999998888888899999999999988877444332 11000 00112233345799999999
Q ss_pred CChhhHHHHH----hccccCCEEEEe
Q 018246 256 SAVHSLAPLL----GLLKVNGKLVTV 277 (359)
Q Consensus 256 g~~~~~~~~~----~~l~~~G~~v~~ 277 (359)
.... ....+ ..++++..++..
T Consensus 84 ~~~~-~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 84 PAIH-HASIAANIASYISEGQLIILN 108 (359)
T ss_dssp CGGG-HHHHHHHHGGGCCTTCEEEES
T ss_pred CchH-HHHHHHHHHHhCCCCCEEEEc
Confidence 8765 33333 345555556665
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0071 Score=53.24 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=62.1
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLL 265 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~ 265 (359)
+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+. .++....|+|+.++.....+...+
T Consensus 3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~~---~~~~~~advvi~~v~~~~~~~~v~ 75 (287)
T 3pdu_A 3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPL-VALGARQA---SSP---AEVCAACDITIAMLADPAAAREVC 75 (287)
T ss_dssp CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHH-HHHTCEEC---SCH---HHHHHHCSEEEECCSSHHHHHHHH
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCeec---CCH---HHHHHcCCEEEEEcCCHHHHHHHH
Confidence 58899999999998888888899999999999998887 55565321 222 222335799999998864355444
Q ss_pred -------hccccCCEEEEecC
Q 018246 266 -------GLLKVNGKLVTVGL 279 (359)
Q Consensus 266 -------~~l~~~G~~v~~g~ 279 (359)
..++++..++.++.
T Consensus 76 ~~~~~l~~~l~~g~~vv~~st 96 (287)
T 3pdu_A 76 FGANGVLEGIGGGRGYIDMST 96 (287)
T ss_dssp HSTTCGGGTCCTTCEEEECSC
T ss_pred cCchhhhhcccCCCEEEECCC
Confidence 34566666766644
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0077 Score=52.05 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=52.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH----HcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS----KLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|..+++.+...|++|++++++.++.....+ +.+.. ...|..+.+.+.++ .+.
T Consensus 13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 92 (265)
T 1h5q_A 13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP 92 (265)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 4678999986 999999999999999999999996655433222 23432 22355555443332 246
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 93 id~li~~Ag~ 102 (265)
T 1h5q_A 93 ISGLIANAGV 102 (265)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999999874
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0049 Score=55.47 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=37.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEe-CChhhHHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAISK 226 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~~~ 226 (359)
.++++||.|+ |++|.++++.+...|++|++++ +++++.+.+.++
T Consensus 45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~ 90 (328)
T 2qhx_A 45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT 90 (328)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 4678999986 9999999999999999999999 998877665443
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.014 Score=50.24 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCe-EEEEeCCh--hhHHHHHHHc-CCc---EEecCCCH-HHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLK-VTVISTSP--KKESEAISKL-GAD---AFLVSSDP-AKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~-V~~v~~~~--~~~~~~~~~~-g~~---~v~~~~~~-~~~~~~-------~~ 246 (359)
.++++||.|+ |++|..+++.+...|++ |+++++++ +..+.+.+.. +.. ...|..+. +.+.++ .+
T Consensus 4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 83 (254)
T 1sby_A 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence 4678999986 99999999999999996 99999876 3444443332 222 12344443 333322 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 84 ~id~lv~~Ag~ 94 (254)
T 1sby_A 84 TVDILINGAGI 94 (254)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 89999999983
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.011 Score=49.80 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=63.7
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHcC---CcEEecCC--CHHHHHHhcCCccEEEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKLG---ADAFLVSS--DPAKVKAAMGTMDYIID 253 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~g---~~~v~~~~--~~~~~~~~~~~~d~vid 253 (359)
++++++||-+|+|. |..+..+++..| .+|++++.+++..+.+.+... .-.++..+ +..........+|+|+.
T Consensus 71 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence 47899999999876 778888888764 599999999976655533322 11222221 11111112347999997
Q ss_pred CCCChh---h-HHHHHhccccCCEEEEe
Q 018246 254 TVSAVH---S-LAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~~~---~-~~~~~~~l~~~G~~v~~ 277 (359)
...... . +..+.+.|+|+|+++..
T Consensus 150 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 150 DVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 655431 2 77889999999999887
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.013 Score=51.24 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc------CCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM------GTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~------~~~d 249 (359)
.|+++||.|+ |++|.++++.+...|++|+++++.+. .+...++ .+.. ...|..+.+.+.++. +++|
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD 108 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD 108 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH-HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH-HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence 5789999986 99999999999999999999996643 3333233 3322 223555554433332 4899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 109 ~lv~nAg~ 116 (273)
T 3uf0_A 109 VLVNNAGI 116 (273)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999874
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.025 Score=51.26 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=65.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhH--HHHHHHc-CCcEE-ec-CCCHHHHHHhcCCccEEEECCCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKE--SEAISKL-GADAF-LV-SSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~--~~~~~~~-g~~~v-~~-~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
+.+|||.|+ |.+|...++.+...|.+|+++++++++. +.+ ... +...+ .| ..+.+.+.++..++|+||.+.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l-~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL-QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHH-HTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHH-hhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 467999986 9999999998888899999999987764 333 222 33322 35 55667777777899999987764
Q ss_pred h-----hhHHHHHhcccc-C--CEEEEecCC
Q 018246 258 V-----HSLAPLLGLLKV-N--GKLVTVGLP 280 (359)
Q Consensus 258 ~-----~~~~~~~~~l~~-~--G~~v~~g~~ 280 (359)
. .....+++.++. + +++|.++..
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~ 114 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMP 114 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence 2 111334444433 2 589888754
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0068 Score=54.77 Aligned_cols=88 Identities=16% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
.|++|.|+|.|.+|...++.++.+|.+|++.++++...+.. . |...+ . .+.++....|+|+.++...
T Consensus 172 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~-g~~~~---~---~l~ell~~sDvV~l~~Plt~~T~ 242 (345)
T 4g2n_A 172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--E-GAIYH---D---TLDSLLGASDIFLIAAPGRPELK 242 (345)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--T-TCEEC---S---SHHHHHHTCSEEEECSCCCGGGT
T ss_pred CCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--c-CCeEe---C---CHHHHHhhCCEEEEecCCCHHHH
Confidence 57899999999999999999999999999999886554333 2 54332 1 2344555789999888742
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|+++..+|.++-
T Consensus 243 ~li~~~~l~~mk~gailIN~aR 264 (345)
T 4g2n_A 243 GFLDHDRIAKIPEGAVVINISR 264 (345)
T ss_dssp TCBCHHHHHHSCTTEEEEECSC
T ss_pred HHhCHHHHhhCCCCcEEEECCC
Confidence 112 567889999999999863
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0073 Score=51.05 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC-cEEecCCCHHHHHHhc-CCccEEEECC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA-DAFLVSSDPAKVKAAM-GTMDYIIDTV 255 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~~-~~~d~vid~~ 255 (359)
++++++||-+|+|..|..+..+++..+.+|++++.+++..+.+.+. .+. -.++..+. .....+. +.+|+|+...
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECC
Confidence 4789999999988668888888877678999999999887776332 332 22222221 0111122 4799999642
Q ss_pred CC-------------------------hhhHHHHHhccccCCEEEEe
Q 018246 256 SA-------------------------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 256 g~-------------------------~~~~~~~~~~l~~~G~~v~~ 277 (359)
.- ...+..+.+.|+|+|+++.+
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 21 33477888899999999875
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0061 Score=53.74 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=64.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---E---EecCCCHHHHHHhcCCccEEEECCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---A---FLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~---v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.+++++|+|+|++|.+++..+...| +|++++|+.++.+.+.++++.. . .++..+ +.+..+++|+++++++
T Consensus 127 ~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~---~~~~~~~~DilVn~ag 202 (287)
T 1nvt_A 127 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG---LDVDLDGVDIIINATP 202 (287)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC---TTCCCTTCCEEEECSC
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEee---HHHhhCCCCEEEECCC
Confidence 5789999999999999999999999 9999999988877665554320 0 011111 1222357999999998
Q ss_pred ChhhH-----HH-HHhccccCCEEEEecCC
Q 018246 257 AVHSL-----AP-LLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 257 ~~~~~-----~~-~~~~l~~~G~~v~~g~~ 280 (359)
....- .. ....++++..++++...
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 203 IGMYPNIDVEPIVKAEKLREDMVVMDLIYN 232 (287)
T ss_dssp TTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred CCCCCCCCCCCCCCHHHcCCCCEEEEeeeC
Confidence 64410 01 23567777788888653
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0059 Score=55.04 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=62.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh---
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV--- 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~--- 258 (359)
-.|.+|.|+|.|.+|...++.++..|.+|++.++++++ +.+ .++|... .+. .++....|+|+.++...
T Consensus 144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~l---~e~l~~aDiVil~vp~~~~t 214 (333)
T 2d0i_A 144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVE-KELKARY----MDI---DELLEKSDIVILALPLTRDT 214 (333)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHH-HHHTEEE----CCH---HHHHHHCSEEEECCCCCTTT
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCcee----cCH---HHHHhhCCEEEEcCCCChHH
Confidence 36789999999999999999999999999999998876 444 4556432 122 22334678998888754
Q ss_pred -hhH-HHHHhccccCCEEEEec
Q 018246 259 -HSL-APLLGLLKVNGKLVTVG 278 (359)
Q Consensus 259 -~~~-~~~~~~l~~~G~~v~~g 278 (359)
..+ ...+..|+++ .++.++
T Consensus 215 ~~~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 215 YHIINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp TTSBCHHHHHHTBTC-EEEECS
T ss_pred HHHhCHHHHhhCCCC-EEEECC
Confidence 122 2456778888 777765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0078 Score=53.85 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.++++++||.+|+|. |..+..+++..+ .+|++++.+++..+.+.+. .|.. .++..+-.+.. ...+.+|+|+
T Consensus 72 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Iv 149 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDVIF 149 (317)
T ss_dssp TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEE
T ss_pred CCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc-ccCCCeEEEE
Confidence 448999999999876 778888887653 4799999999988777433 2432 22211111111 1125799999
Q ss_pred ECCCChhhHHHHHhccccCCEEEEec
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
....-......+.+.|+|+|+++..-
T Consensus 150 ~~~~~~~~~~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 150 VTVGVDEVPETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp ECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred EcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 87766554578889999999988763
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0085 Score=51.38 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=51.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC-ChhhHHHHH---HHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST-SPKKESEAI---SKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~-~~~~~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.+.++.+...|++|+++++ ++++.+.+. +..+.+. ..|-.+.+.+.++ .++
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678999886 99999999999999999998876 445544432 2344332 2355555444333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 83 id~lv~nAg~ 92 (246)
T 3osu_A 83 LDVLVNNAGI 92 (246)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.011 Score=52.27 Aligned_cols=87 Identities=22% Similarity=0.174 Sum_probs=64.8
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH---
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL--- 261 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~--- 261 (359)
.+|.|+|.|.+|...+..+...|.+|++.++++++.+.+ .+.|.... .+ ..++.. .|+||.|+.....+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---~~~~~~-aDvvi~~vp~~~~~~~v 87 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPL-AEAGATLA---DS---VADVAA-ADLIHITVLDDAQVREV 87 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHH-HHTTCEEC---SS---HHHHTT-SSEEEECCSSHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCEEc---CC---HHHHHh-CCEEEEECCChHHHHHH
Confidence 469999999999999999988999999999999998888 56665321 22 334455 89999999975323
Q ss_pred -HHHHhccccCCEEEEecC
Q 018246 262 -APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 262 -~~~~~~l~~~G~~v~~g~ 279 (359)
......++++..++..+.
T Consensus 88 ~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 88 VGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp HHHHHTTCCTTCEEEECSC
T ss_pred HHHHHHhcCCCCEEEEeCC
Confidence 345556677777777654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0086 Score=53.55 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=52.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC------------hhhHHHHH---HHcCCcE---EecCCCHHHHHH
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS------------PKKESEAI---SKLGADA---FLVSSDPAKVKA 243 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~------------~~~~~~~~---~~~g~~~---v~~~~~~~~~~~ 243 (359)
.|+++||.|+ |++|.++++.+...|++|++++++ .++.+... ++.+... ..|..+.+.+.+
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 124 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA 124 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 5789999986 999999999999999999999876 44444332 2344332 235555544443
Q ss_pred h-------cCCccEEEECCCC
Q 018246 244 A-------MGTMDYIIDTVSA 257 (359)
Q Consensus 244 ~-------~~~~d~vid~~g~ 257 (359)
+ .+++|++++++|.
T Consensus 125 ~~~~~~~~~g~iD~lVnnAg~ 145 (317)
T 3oec_A 125 VVDEALAEFGHIDILVSNVGI 145 (317)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 3 2489999999884
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0053 Score=53.56 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEE
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vi 252 (359)
..+++|||.|+ |++|.++++.+...|++|+++++++++.. . ... ...|-.+.+.+.++ .+++|+++
T Consensus 12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 86 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----N-VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILV 86 (269)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----T-SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----C-ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 57899999986 99999999999999999999998875431 1 122 22455665444433 24899999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
+++|.
T Consensus 87 ~nAg~ 91 (269)
T 3vtz_A 87 NNAGI 91 (269)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 99984
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.017 Score=50.88 Aligned_cols=95 Identities=22% Similarity=0.171 Sum_probs=65.7
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHH--HHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKES--EAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~--~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
..+|||.|+ |.+|...++.+...| .+|++++|++++.. .+ ...++..+ .|..+.+.+.++..++|+||.+.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 83 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKEL-RLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYW 83 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHH-HHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCC
Confidence 468999997 999999998888778 89999999877642 22 34455433 35667777777778999999998732
Q ss_pred h---------hHHHHHhcccc--CCEEEEecC
Q 018246 259 H---------SLAPLLGLLKV--NGKLVTVGL 279 (359)
Q Consensus 259 ~---------~~~~~~~~l~~--~G~~v~~g~ 279 (359)
. ....+++.++. -+++|..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~ 115 (299)
T 2wm3_A 84 ESCSQEQEVKQGKLLADLARRLGLHYVVYSGL 115 (299)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred ccccchHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 1 12234444433 257887543
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0073 Score=52.43 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=49.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++. ..+. .....|-.+.+.+..+ .+++|+++++
T Consensus 10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--~~~~--~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn 85 (261)
T 4h15_A 10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG--LPEE--LFVEADLTTKEGCAIVAEATRQRLGGVDVIVHM 85 (261)
T ss_dssp TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT--SCTT--TEEECCTTSHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC--CCcE--EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 6899999986 9999999999999999999999875431 1011 1123455555433332 3589999998
Q ss_pred CC
Q 018246 255 VS 256 (359)
Q Consensus 255 ~g 256 (359)
+|
T Consensus 86 AG 87 (261)
T 4h15_A 86 LG 87 (261)
T ss_dssp CC
T ss_pred CC
Confidence 87
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.006 Score=55.27 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh---
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV--- 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~--- 258 (359)
-.|.+|.|+|.|.+|...++.++..|.+|++.+++.++. .. +.+|+..+. + +.++....|+|+.++...
T Consensus 166 l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-~~~g~~~~~---~---l~ell~~aDvV~l~~P~t~~t 237 (347)
T 1mx3_A 166 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VE-RALGLQRVS---T---LQDLLFHSDCVTLHCGLNEHN 237 (347)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HH-HHHTCEECS---S---HHHHHHHCSEEEECCCCCTTC
T ss_pred CCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hH-hhcCCeecC---C---HHHHHhcCCEEEEcCCCCHHH
Confidence 368899999999999999999999999999999876542 23 456764321 1 233344689999887642
Q ss_pred -hhH-HHHHhccccCCEEEEecCC
Q 018246 259 -HSL-APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 259 -~~~-~~~~~~l~~~G~~v~~g~~ 280 (359)
..+ ...+..|+++..++.++..
T Consensus 238 ~~li~~~~l~~mk~gailIN~arg 261 (347)
T 1mx3_A 238 HHLINDFTVKQMRQGAFLVNTARG 261 (347)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCT
T ss_pred HHHhHHHHHhcCCCCCEEEECCCC
Confidence 123 5677889999999988654
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0085 Score=52.20 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=51.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHH---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEA---ISKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~---~~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|..+++.+...|++|++++++.+ ..+.+ .++.+... ..|..+.+.+.++ .++
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 107 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG 107 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 5789999986 99999999999999999999998543 33332 23344332 2344554433332 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 108 id~li~nAg~ 117 (271)
T 4iin_A 108 LSYLVNNAGV 117 (271)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999999884
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=51.01 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=62.2
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCe-EEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLK-VTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~-V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
-+|.|+|+|.+|...+..+...|.+ |.+.++++++.+.+.+.+|....- + ..+.....|+|+.++.... ...
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~---~---~~~~~~~~Dvvi~av~~~~-~~~ 83 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTT---D---LAEVNPYAKLYIVSLKDSA-FAE 83 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEES---C---GGGSCSCCSEEEECCCHHH-HHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeC---C---HHHHhcCCCEEEEecCHHH-HHH
Confidence 4699999999999988888878987 899999999888886666764321 1 1223457899999998765 344
Q ss_pred HHh----ccccCCEEEEec
Q 018246 264 LLG----LLKVNGKLVTVG 278 (359)
Q Consensus 264 ~~~----~l~~~G~~v~~g 278 (359)
.++ .++++..++.+.
T Consensus 84 v~~~l~~~~~~~~ivv~~s 102 (266)
T 3d1l_A 84 LLQGIVEGKREEALMVHTA 102 (266)
T ss_dssp HHHHHHTTCCTTCEEEECC
T ss_pred HHHHHHhhcCCCcEEEECC
Confidence 443 344566666664
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0038 Score=53.73 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=69.1
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhcCC
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~ 247 (359)
.+.....+.++.+||-+|+|. |..+..+++..+.+|++++.+++..+.+.+. .|.. .++..+- ..+....+.
T Consensus 37 ~l~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~ 114 (257)
T 3f4k_A 37 AVSFINELTDDAKIADIGCGT-GGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEE 114 (257)
T ss_dssp HHTTSCCCCTTCEEEEETCTT-SHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTC
T ss_pred HHHHHhcCCCCCeEEEeCCCC-CHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCC
Confidence 344454567899999999875 8888899998878999999999887766332 3321 2221111 111111247
Q ss_pred ccEEEECC-----CChhhHHHHHhccccCCEEEEec
Q 018246 248 MDYIIDTV-----SAVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 248 ~d~vid~~-----g~~~~~~~~~~~l~~~G~~v~~g 278 (359)
+|+|+... +-...+..+.+.|+|+|+++...
T Consensus 115 fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 115 LDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp EEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99997532 22345788999999999998774
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.022 Score=50.79 Aligned_cols=110 Identities=17% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC-CC-eEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GL-KVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~-g~-~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
....+|.|+|+|.+|...+..+... |. +|.+.++++++.+.+.++++. -.+ ..+ ..++..+.|+|+.|+...
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~--~~~---~~e~v~~aDiVi~atp~~ 207 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRV--CSS---VQEAVAGADVIITVTLAT 207 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEE--CSS---HHHHHTTCSEEEECCCCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEE--eCC---HHHHHhcCCEEEEEeCCC
Confidence 4567899999999999887766554 87 999999999998888677662 111 222 334445789999998753
Q ss_pred h-hHHHHHhccccCCEEEEecCCCCCe-eeCHHHHHhcCcEEE
Q 018246 259 H-SLAPLLGLLKVNGKLVTVGLPEKPL-EVPIFALVGARRLVG 299 (359)
Q Consensus 259 ~-~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~k~~~i~ 299 (359)
. .+.. ..++++-.++.+|...... .+. ..+..++..+.
T Consensus 208 ~~v~~~--~~l~~g~~vi~~g~~~p~~~el~-~~~~~~g~~~v 247 (312)
T 2i99_A 208 EPILFG--EWVKPGAHINAVGASRPDWRELD-DELMKEAVLYV 247 (312)
T ss_dssp SCCBCG--GGSCTTCEEEECCCCSTTCCSBC-HHHHHHSEEEE
T ss_pred CcccCH--HHcCCCcEEEeCCCCCCCceecc-HHHHhcCEEEE
Confidence 2 1211 5678888888876544322 222 23344554444
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.028 Score=48.20 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=50.2
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCC-CHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSS-DPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~-~~~~~~~~~~~~d~vid~~g~ 257 (359)
-.++++||.|+ |++|.++++.+...|++|++++++++.. ++++...+ .|.. +.+.+.+...++|++++++|.
T Consensus 17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~ 91 (249)
T 1o5i_A 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG 91 (249)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----HhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence 46789999986 9999999999999999999999987443 34453222 2331 222222223389999999873
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.011 Score=52.84 Aligned_cols=75 Identities=20% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC----------hhhHHHHHH---HcCCcEE---ecCCCHHHHHHh-
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS----------PKKESEAIS---KLGADAF---LVSSDPAKVKAA- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~----------~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~- 244 (359)
.|+++||.|+ |++|.+.++.+...|++|++++++ .++.+.+.+ +.+.... .|..+.+.+.++
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 105 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI 105 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 5789999986 999999999999999999999887 444444333 3343322 244454443333
Q ss_pred ------cCCccEEEECCCC
Q 018246 245 ------MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ------~~~~d~vid~~g~ 257 (359)
.+++|++++++|.
T Consensus 106 ~~~~~~~g~iD~lv~nAg~ 124 (322)
T 3qlj_A 106 QTAVETFGGLDVLVNNAGI 124 (322)
T ss_dssp HHHHHHHSCCCEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 2489999999984
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=52.18 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=63.1
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+.+ .+.|... ..+. .+.....|+|+.|+.....+...
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~---~~~~---~~~~~~~DvVi~av~~~~~~~~v 103 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLF-IQEGARL---GRTP---AEVVSTCDITFACVSDPKAAKDL 103 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHH-HHTTCEE---CSCH---HHHHHHCSEEEECCSSHHHHHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-HHcCCEE---cCCH---HHHHhcCCEEEEeCCCHHHHHHH
Confidence 469999999999999988888899999999999988777 5566532 1222 12223589999999965435554
Q ss_pred H-------hccccCCEEEEecC
Q 018246 265 L-------GLLKVNGKLVTVGL 279 (359)
Q Consensus 265 ~-------~~l~~~G~~v~~g~ 279 (359)
+ ..+.++..++.++.
T Consensus 104 ~~~~~~~~~~l~~~~~vv~~s~ 125 (316)
T 2uyy_A 104 VLGPSGVLQGIRPGKCYVDMST 125 (316)
T ss_dssp HHSTTCGGGGCCTTCEEEECSC
T ss_pred HcCchhHhhcCCCCCEEEECCC
Confidence 4 34566677776653
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0098 Score=53.44 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=53.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cC--CcE-EecCCCHHHHHHhcC--CccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LG--ADA-FLVSSDPAKVKAAMG--TMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g--~~~-v~~~~~~~~~~~~~~--~~d~vi 252 (359)
.+.+|||.|+ |.+|...++.+...|++|++++++.++.....+. .+ ... ..|..+.+.+.++.. ++|+|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 4568999986 9999999999999999999999876543332222 13 222 235556666666554 899999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
++++.
T Consensus 84 h~A~~ 88 (341)
T 3enk_A 84 HFAAL 88 (341)
T ss_dssp ECCCC
T ss_pred ECccc
Confidence 99975
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.037 Score=46.34 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=65.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHhc----CCcc
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAAM----GTMD 249 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~----~~~d 249 (359)
.++.+||-+|+| .|..+..+++.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+..+. +.||
T Consensus 57 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 57 QGARNILEIGTL-GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HTCSEEEEECCT-TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hCCCEEEEecCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 567899999987 477788888877 56999999999887766332 3432 233222223333332 4699
Q ss_pred EEEECCCCh---hhHHHHHhccccCCEEEEecC
Q 018246 250 YIIDTVSAV---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 250 ~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+|+-..... ..+..+.+.|+|+|.++.-..
T Consensus 136 ~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 136 FIFIDADKQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEEECSCGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998554332 357788999999998887543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.037 Score=49.51 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=81.6
Q ss_pred EEEEECCchHHH-HHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 186 HLGVAGLGGLGH-VAVKIGKAF-GLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~-~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+|.|+|+|.+|. ..+..++.. +.++++.++++++.+.+.+++|... ..++ .+. +...+|+|+.++....-.+
T Consensus 4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~--~~~---l~~~~D~V~i~tp~~~h~~ 78 (323)
T 1xea_A 4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDY--RDV---LQYGVDAVMIHAATDVHST 78 (323)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSST--TGG---GGGCCSEEEECSCGGGHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCH--HHH---hhcCCCEEEEECCchhHHH
Confidence 588999999997 466665554 6777788899988888778888653 2222 121 2347999999999776466
Q ss_pred HHHhccccCCEEEEecCCCCCeeeCHH------HHH-hcCcEE-EEeecCCHHHHHHHHHHHHhCCCc
Q 018246 263 PLLGLLKVNGKLVTVGLPEKPLEVPIF------ALV-GARRLV-GGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~~~~~~~~~~~------~~~-~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
.+..+++.|-. |++.- ++..+.. .+. .++..+ .++.......+..+.+++++|.+-
T Consensus 79 ~~~~al~~Gk~-V~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG 142 (323)
T 1xea_A 79 LAAFFLHLGIP-TFVDK---PLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQQECG 142 (323)
T ss_dssp HHHHHHHTTCC-EEEES---CSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHHTSCT
T ss_pred HHHHHHHCCCe-EEEeC---CCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhcCCcC
Confidence 66677776544 33432 2222222 111 234444 444444446688888999998873
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.028 Score=48.58 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=60.7
Q ss_pred EEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
+|.|+|+|.+|...+..+...| .+|++.++++++.+.+.+++|....-+.. +.. ..|+||.|+.... +...
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~------~~~-~~D~vi~~v~~~~-~~~v 73 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP------ELH-SDDVLILAVKPQD-MEAA 73 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC------CCC-TTSEEEECSCHHH-HHHH
T ss_pred EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHH------HHh-cCCEEEEEeCchh-HHHH
Confidence 5889999999999888888889 89999999999988885566765321111 223 6899999999443 6677
Q ss_pred Hhcccc-CCEEEEe
Q 018246 265 LGLLKV-NGKLVTV 277 (359)
Q Consensus 265 ~~~l~~-~G~~v~~ 277 (359)
+..+.+ +..++.+
T Consensus 74 ~~~l~~~~~ivv~~ 87 (263)
T 1yqg_A 74 CKNIRTNGALVLSV 87 (263)
T ss_dssp HTTCCCTTCEEEEC
T ss_pred HHHhccCCCEEEEe
Confidence 766653 3344444
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0031 Score=54.10 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=44.8
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc----CCccEEEECCCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~----~~~d~vid~~g~ 257 (359)
++|||.|+ |.+|..++..+...|++|+++++++++.+. ....|..+.+.+.++. +++|++|+++|.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~ 72 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV 72 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------cccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence 36899986 999999999998899999999988654210 0001112222233332 489999998874
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0045 Score=55.31 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=63.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
.|.+|.|+|.|.+|...++.++..|.+|++.+++++..+ ++.... ....+.++....|+|+.++...
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~------~~~~~~---~~~~l~ell~~aDiV~l~~Plt~~t~ 208 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP------GVESYV---GREELRAFLNQTRVLINLLPNTAQTV 208 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCT------TCEEEE---SHHHHHHHHHTCSEEEECCCCCGGGT
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhh------hhhhhc---ccCCHHHHHhhCCEEEEecCCchhhh
Confidence 588999999999999999999999999999998765421 222221 1234555556788988877632
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...+..|+++..++.++-
T Consensus 209 ~li~~~~l~~mk~gailIN~aR 230 (315)
T 3pp8_A 209 GIINSELLDQLPDGAYVLNLAR 230 (315)
T ss_dssp TCBSHHHHTTSCTTEEEEECSC
T ss_pred hhccHHHHhhCCCCCEEEECCC
Confidence 122 567788888888888863
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.015 Score=50.95 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc----CC-----------cEEecCCCHHHHHHhc
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL----GA-----------DAFLVSSDPAKVKAAM 245 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~----g~-----------~~v~~~~~~~~~~~~~ 245 (359)
..+.+||++|+|. |..+..++++ +. +|++++.+++..+.+.+.+ +. -.++..+..+.+.. .
T Consensus 74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~ 150 (281)
T 1mjf_A 74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N 150 (281)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence 3567899998754 5566677777 65 9999999999888885555 21 12332222233444 5
Q ss_pred CCccEEEECCC----------ChhhHHHHHhccccCCEEEEe
Q 018246 246 GTMDYIIDTVS----------AVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 246 ~~~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~ 277 (359)
+.||+|+-... ....+..+.+.|+|+|.++..
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 58999985433 133578899999999999875
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0085 Score=52.37 Aligned_cols=95 Identities=16% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHc----CCc--EEecCCCHHHHHHhc-CCccE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKL----GAD--AFLVSSDPAKVKAAM-GTMDY 250 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~-~~~d~ 250 (359)
.++++++||-+|+| .|..+..+++.. +.+|++++.+++..+.+.+.+ |.. .++..+-.+ ... +.+|+
T Consensus 107 ~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD~ 182 (275)
T 1yb2_A 107 GLRPGMDILEVGVG-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYDA 182 (275)
T ss_dssp CCCTTCEEEEECCT-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEEE
T ss_pred CCCCcCEEEEecCC-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCccE
Confidence 35889999999987 477777888873 569999999999887774433 422 222221111 112 36999
Q ss_pred EEECCCCh-hhHHHHHhccccCCEEEEec
Q 018246 251 IIDTVSAV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 251 vid~~g~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
|+...... ..+..+.+.|+++|+++...
T Consensus 183 Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 183 VIADIPDPWNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp EEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred EEEcCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 99766544 46889999999999998874
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.013 Score=50.63 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=52.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHH---CCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHh----c-
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKA---FGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAA----M- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~---~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~----~- 245 (359)
.++++||.|+ |++|.+.++.+.. .|++|+++++++++.+.+.+++ +.. ...|-.+.+.+.++ .
T Consensus 5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (259)
T 1oaa_A 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE 84 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence 4678899886 9999998888877 8999999999988876664443 322 12355555433332 1
Q ss_pred ----CCcc--EEEECCCC
Q 018246 246 ----GTMD--YIIDTVSA 257 (359)
Q Consensus 246 ----~~~d--~vid~~g~ 257 (359)
+.+| ++++++|.
T Consensus 85 ~~~~g~~d~~~lvnnAg~ 102 (259)
T 1oaa_A 85 LPRPEGLQRLLLINNAAT 102 (259)
T ss_dssp SCCCTTCCEEEEEECCCC
T ss_pred ccccccCCccEEEECCcc
Confidence 2578 99998873
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0071 Score=52.41 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCC---CeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhc------
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFG---LKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAM------ 245 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g---~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~------ 245 (359)
-.+.++||.|+ |++|..+++.+...| ++|++++++.++.+.+ +++ +.. ...|..+.+.+..+.
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 97 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV 97 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence 35678999986 999999999999899 8999999988754433 222 322 123444443333322
Q ss_pred -C--CccEEEECCCC
Q 018246 246 -G--TMDYIIDTVSA 257 (359)
Q Consensus 246 -~--~~d~vid~~g~ 257 (359)
+ ++|++|.++|.
T Consensus 98 ~g~~~id~li~~Ag~ 112 (267)
T 1sny_A 98 TKDQGLNVLFNNAGI 112 (267)
T ss_dssp HGGGCCSEEEECCCC
T ss_pred cCCCCccEEEECCCc
Confidence 2 69999999873
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.014 Score=52.46 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC-----hhhHHHHH---HHcCCc---EEecCCCHHHHHHh------
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-----PKKESEAI---SKLGAD---AFLVSSDPAKVKAA------ 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-----~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~------ 244 (359)
.++++||.|+ |++|.++++.+...|++|++++++ +++.+.+. +..+.. ...|-.+.+.+.++
T Consensus 4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~ 83 (324)
T 3u9l_A 4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG 83 (324)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 3578999986 999999999999999999998775 33333332 233432 22355555443333
Q ss_pred -cCCccEEEECCCC
Q 018246 245 -MGTMDYIIDTVSA 257 (359)
Q Consensus 245 -~~~~d~vid~~g~ 257 (359)
.+++|++++++|.
T Consensus 84 ~~g~iD~lVnnAG~ 97 (324)
T 3u9l_A 84 EDGRIDVLIHNAGH 97 (324)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HcCCCCEEEECCCc
Confidence 2489999999983
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.017 Score=51.33 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=60.2
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec-------C--CCHHHHHHhcCCccEEEECCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV-------S--SDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~-------~--~~~~~~~~~~~~~d~vid~~g 256 (359)
+|.|+|+|.+|...+..+...|.+|+++++++++.+.+ ++.|...... . .+...........|+||-|+.
T Consensus 5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAI-RKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-HhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 68999999999999988888899999999999988887 4446322110 0 011111111137999999998
Q ss_pred ChhhHHHHHh----ccccCCEEEEe
Q 018246 257 AVHSLAPLLG----LLKVNGKLVTV 277 (359)
Q Consensus 257 ~~~~~~~~~~----~l~~~G~~v~~ 277 (359)
... +...++ .++++..++.+
T Consensus 84 ~~~-~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 84 AQQ-LDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp HHH-HHHHHHHHGGGCCTTCEEEEC
T ss_pred ccc-HHHHHHHHHHhcCCCCEEEEe
Confidence 755 444443 45556666666
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.11 Score=47.03 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=82.4
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEEE-EeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTV-ISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~~-v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|+|.+|...+..++.. ++++++ .++++++.+.+ +++|+.. +.+.+.+.. ...+|+|+.|+....-.+.
T Consensus 7 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a-~~~g~~~---~~~~~~ll~-~~~~D~V~i~tp~~~h~~~ 81 (359)
T 3e18_A 7 QLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA-AQKGLKI---YESYEAVLA-DEKVDAVLIATPNDSHKEL 81 (359)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-HTTTCCB---CSCHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-HhcCCce---eCCHHHHhc-CCCCCEEEEcCCcHHHHHH
Confidence 688999999999888877766 667765 57777777655 6777642 333222211 2479999999987765777
Q ss_pred HHhccccCCEEEEecCCCCCeeeCHHHH-------HhcCcEE-EEeecCCHHHHHHHHHHHHhCCCc
Q 018246 264 LLGLLKVNGKLVTVGLPEKPLEVPIFAL-------VGARRLV-GGSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~-------~~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+..+++.|-. |++.- ++..+..+. -.++..+ .++.......+..+.+++++|.|-
T Consensus 82 ~~~al~aGkh-Vl~EK---P~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG 144 (359)
T 3e18_A 82 AISALEAGKH-VVCEK---PVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIG 144 (359)
T ss_dssp HHHHHHTTCE-EEEES---SCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHCCCC-EEeeC---CCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCCC
Confidence 7888887654 44432 233332221 1234444 344444446688999999999884
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.01 Score=53.45 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=52.6
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
..+.+|||+|+ |.+|..+++.+...|.+|+++++++++ .+... ..|..+.+.+.++..++|+||.+++.
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~ 87 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF 87 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence 46778999987 999999999999999999999988755 23333 34566677777777799999998864
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.041 Score=53.80 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC-hhhH-HHHHHHcCCcEEecCCCH-HH----HHHh---cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-PKKE-SEAISKLGADAFLVSSDP-AK----VKAA---MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-~~~~-~~~~~~~g~~~v~~~~~~-~~----~~~~---~~~~d~v 251 (359)
.|+++||.|+ +++|++.++.+...|++|++.++. .++. +++ ++.|...+...-+. +. ++++ .+.+|++
T Consensus 321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i-~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiL 399 (604)
T 2et6_A 321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEI-KAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDIL 399 (604)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHH-HhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEE
Confidence 4678899886 899999999999999999998753 2332 333 45565444333333 22 2222 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLP 280 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~ 280 (359)
++++|.. ...+.++..|. .+|++|.+++.
T Consensus 400 VnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ 455 (604)
T 2et6_A 400 VNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST 455 (604)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence 9999842 11234555563 45899998653
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=50.50 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=49.7
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCH---HHHHH---hcCCccEEEECC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDP---AKVKA---AMGTMDYIIDTV 255 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~---~~~~~---~~~~~d~vid~~ 255 (359)
++++||.|+ |++|.+.++.+...|++|+++++++++.. ++++...+ .|..+. ..+++ ..+++|+++++.
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A 78 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAA---QSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA 78 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH---HHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence 568999986 99999999999999999999999887622 44453322 233331 11222 235899999998
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
|.
T Consensus 79 g~ 80 (239)
T 2ekp_A 79 AV 80 (239)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.012 Score=50.49 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC--
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA-- 257 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-- 257 (359)
..++.+||-+|+| .|..+..+++.. +.+|++++.+++..+.+.+....-.++..+-.+ .. ..+.+|+|+....-
T Consensus 31 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 31 LERVLNGYDLGCG-PGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLAT-WK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp CSCCSSEEEETCT-TTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTT-CC-CSSCEEEEEEESCGGG
T ss_pred CCCCCEEEEecCc-CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhh-cC-ccCCcCEEEEeCchhh
Confidence 3788899999987 466777777765 679999999999888884443322222222111 11 23479999975431
Q ss_pred ----hhhHHHHHhccccCCEEEEec
Q 018246 258 ----VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 258 ----~~~~~~~~~~l~~~G~~v~~g 278 (359)
...+..+.+.|+|+|+++..-
T Consensus 108 ~~~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 VPDHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp STTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEEe
Confidence 235678889999999998764
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.017 Score=51.33 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=64.0
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
..+|.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|... ..+. .++....|+||.++.....+..
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~---~~~~---~e~~~~aDvVi~~vp~~~~~~~ 81 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAAL-VAAGAHL---CESV---KAALSASPATIFVLLDNHATHE 81 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHH-HHHTCEE---CSSH---HHHHHHSSEEEECCSSHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCee---cCCH---HHHHhcCCEEEEEeCCHHHHHH
Confidence 4579999999999999999999999999999999998888 4556532 1221 2223357999999987653444
Q ss_pred HH-----hccccCCEEEEecCC
Q 018246 264 LL-----GLLKVNGKLVTVGLP 280 (359)
Q Consensus 264 ~~-----~~l~~~G~~v~~g~~ 280 (359)
.+ ..+.++..++.++..
T Consensus 82 v~~~~~l~~~~~g~ivid~st~ 103 (306)
T 3l6d_A 82 VLGMPGVARALAHRTIVDYTTN 103 (306)
T ss_dssp HHTSTTHHHHTTTCEEEECCCC
T ss_pred HhcccchhhccCCCEEEECCCC
Confidence 33 234566677776543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.017 Score=51.47 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=61.7
Q ss_pred CEEEEECCchHHHHHHHHHHH--CCCeE-EEEeCChhh-HHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCCh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKA--FGLKV-TVISTSPKK-ESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSAV 258 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~--~g~~V-~~v~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~ 258 (359)
-+|.|+|+|.+|...+..+.. -++++ .++++++++ ...+.+++|.... ..+.+.+...+ .++|+|+++++..
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--~~~~e~ll~~~~~~~iDvV~~atp~~ 82 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS 82 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--cCCHHHHHhccCCCCCcEEEECCChH
Confidence 478999999999998888843 46654 456666666 4444478886532 12222232221 3799999999976
Q ss_pred hhHHHHHhcccc--CCEEEEe
Q 018246 259 HSLAPLLGLLKV--NGKLVTV 277 (359)
Q Consensus 259 ~~~~~~~~~l~~--~G~~v~~ 277 (359)
...+.+..+++. |..+++.
T Consensus 83 ~h~~~a~~al~a~~Gk~Vi~e 103 (312)
T 1nvm_B 83 AHVQNEALLRQAKPGIRLIDL 103 (312)
T ss_dssp HHHHHHHHHHHHCTTCEEEEC
T ss_pred HHHHHHHHHHHhCCCCEEEEc
Confidence 656778888888 8887764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.019 Score=51.15 Aligned_cols=92 Identities=12% Similarity=0.175 Sum_probs=63.3
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh------hhHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP------KKESEAI--SKLGADAF-LVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vid 253 (359)
..+|||.|+ |.+|...++.+...|.+|++++|++ ++.+.+. ...++..+ .|..+.+.+.++..++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~ 83 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS 83 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 356999986 9999999999988999999999986 2332221 23455433 466677777788889999999
Q ss_pred CCCChh--hHHHHHhccccC---CEEE
Q 018246 254 TVSAVH--SLAPLLGLLKVN---GKLV 275 (359)
Q Consensus 254 ~~g~~~--~~~~~~~~l~~~---G~~v 275 (359)
+++... ....+++.+... +++|
T Consensus 84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 84 ALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp CCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred CCCccchhhHHHHHHHHHHhCCccEEe
Confidence 988532 123444444433 4776
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.043 Score=47.04 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh------cCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA------MGT 247 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~------~~~ 247 (359)
.++++||-+|+| .|..++.+++.. +.+|+.++.+++..+.+.+. .|.. .++..+..+.+..+ .+.
T Consensus 78 ~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCC-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 456789999876 366777888876 57999999999887776432 3431 23323323334444 357
Q ss_pred ccEEEECCCC---hhhHHHHHhccccCCEEEEec
Q 018246 248 MDYIIDTVSA---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 248 ~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
||+||-.... ...+..+.+.|++||.++.-.
T Consensus 157 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999854432 235678899999999998753
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.062 Score=48.54 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=83.1
Q ss_pred EEEEECCchHHHH-HHHHHHHC-CCeEEE-EeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 186 HLGVAGLGGLGHV-AVKIGKAF-GLKVTV-ISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~-a~~la~~~-g~~V~~-v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+|.|+|+|.+|.. .+...+.. +++|++ .++++++.+.+.+++|...+++ +.+.+.. ...+|+|+-|+....=.+
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~--d~~ell~-~~~iDaV~I~tP~~~H~~ 101 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFG--SYEEMLA-SDVIDAVYIPLPTSQHIE 101 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEES--SHHHHHH-CSSCSEEEECSCGGGHHH
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeC--CHHHHhc-CCCCCEEEEeCCCchhHH
Confidence 6889999999975 45555555 677765 5678888888888999876642 2222111 247999999998765467
Q ss_pred HHHhccccCCEEEEecCCCCCeeeCHH---HH----HhcCcEE-EEeecCCHHHHHHHHHHHHhCCC
Q 018246 263 PLLGLLKVNGKLVTVGLPEKPLEVPIF---AL----VGARRLV-GGSNVGGMKETQEMLDFCAKHNI 321 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i 321 (359)
.+..+|+.|- =|++.- ++..+.. .+ -.++..+ .+........+..+.+++++|.|
T Consensus 102 ~~~~al~aGk-hVl~EK---Pla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~i 164 (350)
T 4had_A 102 WSIKAADAGK-HVVCEK---PLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAI 164 (350)
T ss_dssp HHHHHHHTTC-EEEECS---CCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTT
T ss_pred HHHHHHhcCC-EEEEeC---CcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCC
Confidence 7778887654 456633 3332222 11 1234433 44444444668899999999988
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.021 Score=50.80 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=63.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHH--HHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEA--ISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~--~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
.+|||.|+ |.+|...++.+...|.+|++++|+++ +.+.+ .+..++..+ .|..+.+.+.++..++|+||.+++...
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~~ 91 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQ 91 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchhh
Confidence 46999986 99999999999999999999999875 33222 123455433 466677777787789999999988532
Q ss_pred --hHHHHHhccccC---CEEEE
Q 018246 260 --SLAPLLGLLKVN---GKLVT 276 (359)
Q Consensus 260 --~~~~~~~~l~~~---G~~v~ 276 (359)
....+++.++.. ++++.
T Consensus 92 ~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 92 ILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp STTHHHHHHHHHHHCCCCEEEC
T ss_pred hHHHHHHHHHHHhcCCCCEEEe
Confidence 133444444332 46663
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.013 Score=49.43 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=62.9
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEE-EeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTV-ISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~-v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
.+|.|+|+|.+|.+.+..+...|.+|++ .++++++.+.+.+++|..... ...+ .....|+||-++.... ...
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~--~~~~----~~~~aDvVilavp~~~-~~~ 96 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKA--VELK----DALQADVVILAVPYDS-IAD 96 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEE--CCHH----HHTTSSEEEEESCGGG-HHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCccc--ChHH----HHhcCCEEEEeCChHH-HHH
Confidence 3699999999999999988888999988 899999988876777865442 2221 2357899999998655 666
Q ss_pred HHhccc--cCCEEEEe
Q 018246 264 LLGLLK--VNGKLVTV 277 (359)
Q Consensus 264 ~~~~l~--~~G~~v~~ 277 (359)
.+..++ ++..++.+
T Consensus 97 v~~~l~~~~~~ivi~~ 112 (220)
T 4huj_A 97 IVTQVSDWGGQIVVDA 112 (220)
T ss_dssp HHTTCSCCTTCEEEEC
T ss_pred HHHHhhccCCCEEEEc
Confidence 666654 23344444
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.012 Score=50.56 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=51.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhc-------CCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAM-------GTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~-------~~~d~vid 253 (359)
.++++||.|+ |++|.+.++.+...|++|++++++++. ++.+... ..|..+.+.+.++. +++|++++
T Consensus 6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~ 80 (250)
T 2fwm_X 6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN 80 (250)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999986 999999999999999999999988653 2334322 23556554444332 48999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 81 ~Ag~ 84 (250)
T 2fwm_X 81 AAGI 84 (250)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9874
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.014 Score=50.42 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh-HHHHHHH---cCCc---EEecCCCHHHHHHhc-------CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAISK---LGAD---AFLVSSDPAKVKAAM-------GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~~~---~g~~---~v~~~~~~~~~~~~~-------~~ 247 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++ .+.+.+. .+.. ...|..+.+.+.++. ++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 85 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK 85 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4678999986 999999999999999999999766544 3333222 2221 223555554444332 48
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+|++|+++|
T Consensus 86 id~lv~~Ag 94 (264)
T 3i4f_A 86 IDFLINNAG 94 (264)
T ss_dssp CCEEECCCC
T ss_pred CCEEEECCc
Confidence 999999998
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0087 Score=53.94 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=64.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.|.+|.|+|.|.+|...++.++..|++|++.++++++. + ++. +.. . .+ +.++....|+|+.++....
T Consensus 145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~-~--~~---l~ell~~aDvV~l~~p~~~~t~ 214 (333)
T 1j4a_A 145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYY-V--DS---LDDLYKQADVISLHVPDVPANV 214 (333)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCB-C--SC---HHHHHHHCSEEEECSCCCGGGT
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Cee-c--CC---HHHHHhhCCEEEEcCCCcHHHH
Confidence 57899999999999999999999999999999887654 3 332 321 1 12 2334446899999887432
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|++++.++.++.
T Consensus 215 ~li~~~~l~~mk~ga~lIn~ar 236 (333)
T 1j4a_A 215 HMINDESIAKMKQDVVIVNVSR 236 (333)
T ss_dssp TCBSHHHHHHSCTTEEEEECSC
T ss_pred HHHhHHHHhhCCCCcEEEECCC
Confidence 12 456788999999999865
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.033 Score=50.00 Aligned_cols=130 Identities=10% Similarity=0.002 Sum_probs=83.7
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|...++ .+.+.+.. ...+|+|+.|+....-.+.
T Consensus 7 ~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~~~ 83 (330)
T 3e9m_A 7 RYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAY--GSYEELCK-DETIDIIYIPTYNQGHYSA 83 (330)
T ss_dssp EEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCB--SSHHHHHH-CTTCSEEEECCCGGGHHHH
T ss_pred EEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCcee--CCHHHHhc-CCCCCEEEEcCCCHHHHHH
Confidence 688999999999888877775 56766 5578888887777788864332 22222111 2379999999998765677
Q ss_pred HHhccccCCEEEEecCCCCCeeeCHHH------HH-hcCcEEE-EeecCCHHHHHHHHHHHHhCCCc
Q 018246 264 LLGLLKVNGKLVTVGLPEKPLEVPIFA------LV-GARRLVG-GSNVGGMKETQEMLDFCAKHNIA 322 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~~~~~~~~~------~~-~k~~~i~-g~~~~~~~~~~~~~~~l~~g~i~ 322 (359)
+..+++.|-. |++.- ++..+... .. .++..+. ++.......+..+.+++++|.+-
T Consensus 84 ~~~al~~gk~-vl~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG 146 (330)
T 3e9m_A 84 AKLALSQGKP-VLLEK---PFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLG 146 (330)
T ss_dssp HHHHHHTTCC-EEECS---SCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHCCCe-EEEeC---CCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCC
Confidence 7778877655 44422 23333221 11 2344443 44443346688899999999883
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0036 Score=56.16 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=62.4
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh-h-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV-H- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~- 259 (359)
-.|++|.|+|.|.+|...++.++.+|.+|++.+++++..+. ....+.. ..+.++....|+|+.++... .
T Consensus 135 l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~~~~~~---~~l~ell~~aDvV~l~lPlt~~t 205 (324)
T 3evt_A 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH------FHETVAF---TATADALATANFIVNALPLTPTT 205 (324)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTT------CSEEEEG---GGCHHHHHHCSEEEECCCCCGGG
T ss_pred ccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHh------Hhhcccc---CCHHHHHhhCCEEEEcCCCchHH
Confidence 35889999999999999999999999999999988654321 1222211 12233344688998887632 1
Q ss_pred ---hHHHHHhccccCCEEEEec
Q 018246 260 ---SLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 ---~~~~~~~~l~~~G~~v~~g 278 (359)
.-...+..|+++..++.++
T Consensus 206 ~~li~~~~l~~mk~gailIN~a 227 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIG 227 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECS
T ss_pred HHhcCHHHHhcCCCCCEEEEcC
Confidence 1256778889999998886
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.015 Score=48.12 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=50.7
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE--ecCCCHHHHHHhcC---CccEEEECCCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF--LVSSDPAKVKAAMG---TMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~---~~d~vid~~g~ 257 (359)
++||.|+ |.+|...++.+... +|+++++++++.+.+.++++. .. .|..+.+.+.++.. ++|+++.++|.
T Consensus 2 ~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 76 (207)
T 2yut_A 2 RVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK 76 (207)
T ss_dssp EEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred EEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 6899986 99999988877666 999999999887777555543 32 24455555555443 89999999874
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.011 Score=53.84 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHH--CCCeEEEEeCChhhH-------------HHHHHHcCCc-EEecCCCHHHHHHh-
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKA--FGLKVTVISTSPKKE-------------SEAISKLGAD-AFLVSSDPAKVKAA- 244 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~--~g~~V~~v~~~~~~~-------------~~~~~~~g~~-~v~~~~~~~~~~~~- 244 (359)
.+.+|||.|+ |.+|...++.+.. .|.+|++++++.... ... ...+.. ...|..+.+.+.++
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~ 87 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL-IGFKGEVIAADINNPLDLRRLE 87 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG-TTCCSEEEECCTTCHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc-cccCceEEECCCCCHHHHHHhh
Confidence 5679999986 9999999998888 899999999865411 111 111222 23355666777777
Q ss_pred cCCccEEEECCCC
Q 018246 245 MGTMDYIIDTVSA 257 (359)
Q Consensus 245 ~~~~d~vid~~g~ 257 (359)
..++|+||++++.
T Consensus 88 ~~~~D~vih~A~~ 100 (362)
T 3sxp_A 88 KLHFDYLFHQAAV 100 (362)
T ss_dssp TSCCSEEEECCCC
T ss_pred ccCCCEEEECCcc
Confidence 6699999999983
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0099 Score=51.29 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=50.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.++++||.|+ |++|.+.++.+...|++|+++++++++.+. .. ...|..+.+.+.++ .+.+|++++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~ 93 (253)
T 2nm0_A 20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA 93 (253)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4678999986 999999999999999999999998765432 11 22355555443332 247899999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 94 nAg~ 97 (253)
T 2nm0_A 94 NAGV 97 (253)
T ss_dssp ECSC
T ss_pred CCCC
Confidence 8874
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=51.49 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=59.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH-
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL- 264 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~- 264 (359)
+|.|+|+|.+|...+..+.. |.+|++.++++++.+.+ .+.|.... + . .+.....|+|+.|+.....+...
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~-~~~g~~~~-~--~----~~~~~~~D~vi~~v~~~~~~~~v~ 73 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRH-QEEFGSEA-V--P----LERVAEARVIFTCLPTTREVYEVA 73 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHH-HHHHCCEE-C--C----GGGGGGCSEEEECCSSHHHHHHHH
T ss_pred eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHH-HHCCCccc-C--H----HHHHhCCCEEEEeCCChHHHHHHH
Confidence 58899999999998887777 99999999999888777 44464432 1 1 12334689999999976424333
Q ss_pred ---HhccccCCEEEEecC
Q 018246 265 ---LGLLKVNGKLVTVGL 279 (359)
Q Consensus 265 ---~~~l~~~G~~v~~g~ 279 (359)
...++++..++.++.
T Consensus 74 ~~l~~~l~~~~~vv~~s~ 91 (289)
T 2cvz_A 74 EALYPYLREGTYWVDATS 91 (289)
T ss_dssp HHHTTTCCTTEEEEECSC
T ss_pred HHHHhhCCCCCEEEECCC
Confidence 345566666666643
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.013 Score=50.97 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~ 246 (359)
..++++||.|+ |++|.++++.+...|++|+++ .+++++.+.+.+ +.+... ..|..+.+.+.++ .+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 103 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG 103 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45778999986 999999999999999999886 677766555433 334321 2355555443333 24
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++|+++|.
T Consensus 104 ~id~li~nAg~ 114 (272)
T 4e3z_A 104 RLDGLVNNAGI 114 (272)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 89999999873
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.019 Score=50.29 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=57.6
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC---eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL---KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~---~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
.+|.|+|+|.+|.+.++.+...|. +|++.++++++.+.+.+++|.... .+ ..+.....|+||.++.... +
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~---~~---~~~~~~~aDvVilav~p~~-~ 76 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT---QD---NRQGALNADVVVLAVKPHQ-I 76 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE---SC---HHHHHSSCSEEEECSCGGG-H
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe---CC---hHHHHhcCCeEEEEeCHHH-H
Confidence 468999999999999999888887 899999999999888666776532 11 1233457899999997544 5
Q ss_pred HHHHhcc
Q 018246 262 APLLGLL 268 (359)
Q Consensus 262 ~~~~~~l 268 (359)
...++.+
T Consensus 77 ~~vl~~l 83 (280)
T 3tri_A 77 KMVCEEL 83 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.016 Score=50.40 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=51.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEe-CChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.++++||.|+ |++|.++++.+...|++|++++ ++.++.+...+ ..+.+ ...|..+.+.+.++ .++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 103 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFGK 103 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5678999886 9999999999999999999998 55444443322 22322 22355555444333 248
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++|+++|.
T Consensus 104 id~li~nAg~ 113 (269)
T 3gk3_A 104 VDVLINNAGI 113 (269)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 9999999884
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0039 Score=54.94 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=62.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC-hh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA-VH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-~~-- 259 (359)
.|++|.|+|.|.+|...++.++..|.+|++.++++++.+. .. . .. .+.++....|+|+.++.. +.
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~-~--~~---~l~ell~~aDiV~l~~P~t~~t~ 188 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------DV-I--SE---SPADLFRQSDFVLIAIPLTDKTR 188 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------SE-E--CS---SHHHHHHHCSEEEECCCCCTTTT
T ss_pred ecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------cc-c--cC---ChHHHhhccCeEEEEeeccccch
Confidence 5789999999999999999999999999999988654321 11 1 11 233344468999988873 21
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...+..|+++..++.++.
T Consensus 189 ~li~~~~l~~mk~gailIN~aR 210 (290)
T 3gvx_A 189 GMVNSRLLANARKNLTIVNVAR 210 (290)
T ss_dssp TCBSHHHHTTCCTTCEEEECSC
T ss_pred hhhhHHHHhhhhcCceEEEeeh
Confidence 12 567889999999999864
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=48.75 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=59.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-----------------cEEe--cCCCHHHHH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-----------------DAFL--VSSDPAKVK 242 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-----------------~~v~--~~~~~~~~~ 242 (359)
.++.+||.+|+|. |..+..+++. |.+|++++.+++-++.+.++... -.++ |..+....
T Consensus 21 ~~~~~vLD~GCG~-G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~- 97 (203)
T 1pjz_A 21 VPGARVLVPLCGK-SQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR- 97 (203)
T ss_dssp CTTCEEEETTTCC-SHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH-
T ss_pred CCCCEEEEeCCCC-cHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc-
Confidence 6788999998764 5666777776 88999999999988888555331 0111 11111100
Q ss_pred HhcCCccEEEECCCC-----h---hhHHHHHhccccCCEEEE
Q 018246 243 AAMGTMDYIIDTVSA-----V---HSLAPLLGLLKVNGKLVT 276 (359)
Q Consensus 243 ~~~~~~d~vid~~g~-----~---~~~~~~~~~l~~~G~~v~ 276 (359)
-.+.||+|++...- . ..+..+.+.|+|+|++++
T Consensus 98 -~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 98 -DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp -HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred -cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 01369999974321 1 135778899999999433
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.031 Score=50.41 Aligned_cols=85 Identities=26% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhh-HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+.+|.|+|.|.+|.+.+..++..|.+|++.++++++ .+.+ ++.|.... +. .+.....|+|+-++.... ..
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a-~~~G~~~~----~~---~e~~~~aDvVilavp~~~-~~ 86 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-EAHGLKVA----DV---KTAVAAADVVMILTPDEF-QG 86 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-HHTTCEEE----CH---HHHHHTCSEEEECSCHHH-HH
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHH-HHCCCEEc----cH---HHHHhcCCEEEEeCCcHH-HH
Confidence 357999999999999999999999999999998776 4444 67786422 21 223347899999998765 33
Q ss_pred HHH-----hccccCCEEEEe
Q 018246 263 PLL-----GLLKVNGKLVTV 277 (359)
Q Consensus 263 ~~~-----~~l~~~G~~v~~ 277 (359)
..+ ..++++..++++
T Consensus 87 ~v~~~~i~~~l~~~~ivi~~ 106 (338)
T 1np3_A 87 RLYKEEIEPNLKKGATLAFA 106 (338)
T ss_dssp HHHHHHTGGGCCTTCEEEES
T ss_pred HHHHHHHHhhCCCCCEEEEc
Confidence 333 345666666654
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.039 Score=51.89 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=51.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh--hHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCC-ccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK--KESEAISKLGADAF-LVSSDPAKVKAA-------MGT-MDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~--~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~-~d~ 250 (359)
+++++||.|+ |++|+.+++.+...|++|+++++++. +.+...++.+...+ .|-.+.+.+.++ .++ +|+
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~ 291 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI 291 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence 5789999886 99999999988888999999988643 34444455665432 344443332222 234 999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
+|++.|.
T Consensus 292 lV~nAGv 298 (454)
T 3u0b_A 292 LVNNAGI 298 (454)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999884
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0055 Score=55.94 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCEEEEECC-chHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEE-ecCC-CHHHHHHhcCCccEEEECCCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAF-LVSS-DPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~-~~~~~~~~~~~~d~vid~~g~ 257 (359)
+.+|||+|+ |.+|...++.+... |.+|+++++++++...+....+...+ .|.. +.+.+.++..++|+||.+++.
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~ 101 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI 101 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCcc
Confidence 468999986 99999999888877 89999999988776544222233332 3555 666666666689999998874
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0072 Score=49.90 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=61.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-EEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-AFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.++ +||-+|+|. |..+..+++. |.+|++++.+++..+.+.+.. +.. .++..+ ........+.+|+|+.+...
T Consensus 29 ~~~-~vLdiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~v~~~~~~ 104 (202)
T 2kw5_A 29 PQG-KILCLAEGE-GRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSN-LADFDIVADAWEGIVSIFCH 104 (202)
T ss_dssp CSS-EEEECCCSC-THHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCB-TTTBSCCTTTCSEEEEECCC
T ss_pred CCC-CEEEECCCC-CHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcC-hhhcCCCcCCccEEEEEhhc
Confidence 566 899999875 7777777765 889999999998877774332 222 222111 11111011379999875431
Q ss_pred ------hhhHHHHHhccccCCEEEEecCC
Q 018246 258 ------VHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 258 ------~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
...+..+.+.|+|+|.++.....
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 12467888999999999887543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.023 Score=50.73 Aligned_cols=95 Identities=22% Similarity=0.158 Sum_probs=62.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCC--------c-EEecCCCHHHHHHhcCCccEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGA--------D-AFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~--------~-~v~~~~~~~~~~~~~~~~d~vi 252 (359)
...+||++|+|. |..+..++++.+ .+|++++.+++-.+.+.+.+.. . .++..+..+.+....+.||+|+
T Consensus 108 ~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 457899998753 556667777654 5999999999988888555531 1 2222222233444345799998
Q ss_pred ECCCC----------hhhHHHHHhccccCCEEEEec
Q 018246 253 DTVSA----------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g~----------~~~~~~~~~~l~~~G~~v~~g 278 (359)
..... ...+..+.+.|+|+|.++.-.
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 54421 345788999999999998764
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.041 Score=50.72 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc-EEecCCCHHHHHHhcCCccEEEECCC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD-AFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.++|++||-+|+|. |..++.+|+ .|++|+.++.++..++.+.+. .|.. .+...+..+.+....+.||+|+-...
T Consensus 212 ~~~g~~VLDlg~Gt-G~~sl~~a~-~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 212 VRPGERVLDVYSYV-GGFALRAAR-KGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CCTTCEEEEESCTT-THHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred hcCCCeEEEcccch-hHHHHHHHH-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCC
Confidence 35799999987642 344445555 388899999999988777433 3433 34322222334443446999986444
Q ss_pred C---------------hhhHHHHHhccccCCEEEEecCC
Q 018246 257 A---------------VHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 257 ~---------------~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
. ...+..+.+.|+|+|.++.+...
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3 23467789999999999876543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.029 Score=50.62 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh----hHHHHHHHc------CCcE-EecCCCHHHHHHhcCCccEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK----KESEAISKL------GADA-FLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~----~~~~~~~~~------g~~~-v~~~~~~~~~~~~~~~~d~v 251 (359)
+.+|||+|+ |.+|..+++.+...|.+|+++++++. +.+.+.+.+ +... ..|..+.+.+.++..++|+|
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v 106 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYV 106 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEE
Confidence 468999987 99999999999989999999998653 333332222 2222 23556666677777799999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
|.+++.
T Consensus 107 ih~A~~ 112 (352)
T 1sb8_A 107 LHQAAL 112 (352)
T ss_dssp EECCSC
T ss_pred EECCcc
Confidence 999884
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.008 Score=52.20 Aligned_cols=93 Identities=15% Similarity=0.223 Sum_probs=62.2
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC---CCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-cCCccE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF---GLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-MGTMDY 250 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~---g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-~~~~d~ 250 (359)
+++|.+||-+|+|. |..+..+++.. |++|++++.+++-++.+.++ .+.. .++..+ +..+ .+.+|+
T Consensus 68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D----~~~~~~~~~d~ 142 (261)
T 4gek_A 68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGD----IRDIAIENASM 142 (261)
T ss_dssp CCTTCEEEEETCTT-THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC----TTTCCCCSEEE
T ss_pred CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecc----ccccccccccc
Confidence 48999999999863 66677777764 67999999999888777443 2321 122111 1111 136888
Q ss_pred EEECCCC--------hhhHHHHHhccccCCEEEEec
Q 018246 251 IIDTVSA--------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 251 vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 278 (359)
|+....- ...+..+.+.|+|||+++..-
T Consensus 143 v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 143 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 8764331 124788899999999998763
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.013 Score=51.91 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=61.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcC--------C-cEEecCCCHHHHHHhcCCccEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLG--------A-DAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g--------~-~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+.+||++|+|. |..+..++++.+ .+|++++.+++..+.+.+.+. . -.++..+..+.+....+.||+|+
T Consensus 90 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCc-CHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 457899998754 556667777665 499999999988877744431 1 12232221222222234799998
Q ss_pred ECCCC-----------hhhHHHHHhccccCCEEEEec
Q 018246 253 DTVSA-----------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g~-----------~~~~~~~~~~l~~~G~~v~~g 278 (359)
..... ...+..+.+.|+++|.++...
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 43211 345788999999999998863
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.023 Score=51.21 Aligned_cols=92 Identities=14% Similarity=0.211 Sum_probs=64.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh----hhHHHH--HHHcCCcEE-ecCCCHHHHHHhcC--CccEEEEC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP----KKESEA--ISKLGADAF-LVSSDPAKVKAAMG--TMDYIIDT 254 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~----~~~~~~--~~~~g~~~v-~~~~~~~~~~~~~~--~~d~vid~ 254 (359)
.+|||+|+ |.+|..+++.+...|.+|++++|++ ++.+.+ .+..++..+ .|..+.+.+.++.. ++|+||.+
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 90 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST 90 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence 57999997 9999999999999999999999976 444322 123455433 35666677777766 99999999
Q ss_pred CCChh--hHHHHHhccccCC---EEEE
Q 018246 255 VSAVH--SLAPLLGLLKVNG---KLVT 276 (359)
Q Consensus 255 ~g~~~--~~~~~~~~l~~~G---~~v~ 276 (359)
++... ....+++.++..| +++.
T Consensus 91 a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 91 VGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp CCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred CchhhHHHHHHHHHHHHHcCCceEEee
Confidence 98632 2234555555444 5654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.021 Score=50.44 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=54.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh------hhHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP------KKESEAI--SKLGADAF-LVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vid 253 (359)
..+|||.|+ |.+|...++.+...|.+|++++|+. ++.+.+. ...|+..+ .|..+.+.+.++..++|+||.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 357999987 9999999999999999999999874 3332221 23355433 355666667776678999999
Q ss_pred CCCCh
Q 018246 254 TVSAV 258 (359)
Q Consensus 254 ~~g~~ 258 (359)
+++..
T Consensus 84 ~a~~~ 88 (308)
T 1qyc_A 84 TVGSL 88 (308)
T ss_dssp CCCGG
T ss_pred CCcch
Confidence 99853
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.039 Score=47.73 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHH--HHHhcCCccEEEECCC
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAK--VKAAMGTMDYIIDTVS 256 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~--~~~~~~~~d~vid~~g 256 (359)
.+.++++||-+|+|. |..+..+++. |++|++++.+++-++.+.++.... ...+..+.+. .....+.||+|+.+..
T Consensus 42 ~l~~g~~VLDlGcGt-G~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~ 119 (261)
T 3iv6_A 42 NIVPGSTVAVIGAST-RFLIEKALER-GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRL 119 (261)
T ss_dssp TCCTTCEEEEECTTC-HHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESC
T ss_pred CCCCcCEEEEEeCcc-hHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhh
Confidence 348899999999864 7777777764 889999999999988885555432 1111111110 0122357999987543
Q ss_pred C-----h---hhHHHHHhccccCCEEEEe
Q 018246 257 A-----V---HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 257 ~-----~---~~~~~~~~~l~~~G~~v~~ 277 (359)
- . ..+..+.+.+ |+|+++..
T Consensus 120 l~~~~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 120 INRFTTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred hHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 1 1 2466777788 99998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0053 Score=55.13 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=52.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHhcC--CccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAAMG--TMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~~--~~d~vid~~g~ 257 (359)
.+.+|||.|+ |.+|..+++.+...|.+|++++++........+.+. .. ...|..+.+.+.++.. ++|+||.+++.
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~ 98 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAA 98 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 4678999987 999999999998889999999986543221111222 22 2235566666666665 89999999874
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.04 Score=49.13 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid 253 (359)
+++|++||-+|+|+ |..+.++++.. +.+|++++.++.+.+.+.+. .|.. .++.. +........+.||+|+-
T Consensus 116 ~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~-D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 116 PKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS-SSLHIGELNVEFDKILL 193 (315)
T ss_dssp CCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS-CGGGGGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC-ChhhcccccccCCEEEE
Confidence 37899999988754 45566677765 35999999999988777433 3542 23322 22222223347999975
Q ss_pred ---CCCC-------------------------hhhHHHHHhccccCCEEEEec
Q 018246 254 ---TVSA-------------------------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 254 ---~~g~-------------------------~~~~~~~~~~l~~~G~~v~~g 278 (359)
|.|. ...+..+.+.|+++|+++...
T Consensus 194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 3331 244678899999999998753
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.029 Score=49.64 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=51.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEECCCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+|||+|+ |.+|...++.+...|.+|+++++++.+.+ + + +...+ .|.. .+.+.++..++|+||.+++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~-~--~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I-N--DYEYRVSDYT-LEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C-C--ceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence 57999986 99999999999999999999999855544 3 3 44433 3556 67777777899999999874
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0043 Score=53.98 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=53.9
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
+++|||.|+ |.+|..+++.+...|++|+++++++++.. ..+.. ...|-.+.+.+.++..++|++|+++|.
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~ 74 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGI 74 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence 467999986 99999999999888999999999876532 11222 234566677778888899999999874
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.022 Score=50.30 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=61.2
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
.+|.|+|+|.+|...+..+...|.+|++.++++++.+.+ .+.|... ..+. .+.....|+|+.|+.....+...
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~---~~~~---~~~~~~~D~vi~~vp~~~~~~~v 77 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAV-VAQGAQA---CENN---QKVAAASDIIFTSLPNAGIVETV 77 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-HTTTCEE---CSSH---HHHHHHCSEEEECCSSHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCee---cCCH---HHHHhCCCEEEEECCCHHHHHHH
Confidence 479999999999999888888899999999999888777 4445431 2222 12223589999999765434444
Q ss_pred H-------hccccCCEEEEec
Q 018246 265 L-------GLLKVNGKLVTVG 278 (359)
Q Consensus 265 ~-------~~l~~~G~~v~~g 278 (359)
+ ..++++..++.+.
T Consensus 78 ~~~~~~l~~~l~~~~~vv~~~ 98 (301)
T 3cky_A 78 MNGPGGVLSACKAGTVIVDMS 98 (301)
T ss_dssp HHSTTCHHHHSCTTCEEEECC
T ss_pred HcCcchHhhcCCCCCEEEECC
Confidence 4 3466676776664
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.044 Score=51.91 Aligned_cols=93 Identities=20% Similarity=0.191 Sum_probs=62.9
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----cEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----DAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+|.|+|+|.+|...+..+...|.+|++.++++++.+.+.++.|. ..+....+.+.+.......|+|+-++.....+
T Consensus 3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v 82 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT 82 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHH
Confidence 48899999999999888888899999999999998888555551 11222333322222223689999999874223
Q ss_pred H----HHHhccccCCEEEEec
Q 018246 262 A----PLLGLLKVNGKLVTVG 278 (359)
Q Consensus 262 ~----~~~~~l~~~G~~v~~g 278 (359)
. .+...++++..++.++
T Consensus 83 ~~vl~~l~~~l~~g~iIId~s 103 (478)
T 1pgj_A 83 DSTIEQLKKVFEKGDILVDTG 103 (478)
T ss_dssp HHHHHHHHHHCCTTCEEEECC
T ss_pred HHHHHHHHhhCCCCCEEEECC
Confidence 3 3344566666666654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.014 Score=49.28 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc----------EEecCCCHHHHHHhcCCccEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD----------AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~----------~v~~~~~~~~~~~~~~~~d~v 251 (359)
+++.+||-+|+|. |..+..+++. |++|++++.+++..+.+.+..... .++..+. .......+.+|+|
T Consensus 29 ~~~~~vLdiG~G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGS-GKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-SSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTT-SHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-TSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCC-CHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-cccCCCCCceeEE
Confidence 5788999999875 7777777776 889999999999888884433211 1111111 1111112379999
Q ss_pred EECCC-----C-h---hhHHHHHhccccCCEEEEecC
Q 018246 252 IDTVS-----A-V---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 252 id~~g-----~-~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+.... . . ..+..+.+.|+|+|+++....
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 86432 2 2 357888999999999988743
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.024 Score=49.79 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=63.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCC--------c-EEecCCCHHHHHHhcCCccEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGA--------D-AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~--------~-~v~~~~~~~~~~~~~~~~d~v 251 (359)
.++++||++|+|. |..+..++++.+ .+|++++.+++-.+.+.+.+.. . .++..+..+.+....+.||+|
T Consensus 77 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 4568999998653 555666777654 5999999999988888555531 1 233222223344434589999
Q ss_pred EECCCC----------hhhHHHHHhccccCCEEEEec
Q 018246 252 IDTVSA----------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 252 id~~g~----------~~~~~~~~~~l~~~G~~v~~g 278 (359)
+..... ...+..+.+.|+++|.++...
T Consensus 156 i~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 852211 245788899999999998764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.043 Score=46.55 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=63.3
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhc-CCccEEEECC--
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAM-GTMDYIIDTV-- 255 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-~~~d~vid~~-- 255 (359)
..++++.+||-+|+|. |..+..+++. |++|++++.+++..+.+ ++. -.++..+..+....+. +.+|+|+...
T Consensus 37 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~gvD~s~~~~~~a-~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l 111 (240)
T 3dli_A 37 PYFKGCRRVLDIGCGR-GEFLELCKEE-GIESIGVDINEDMIKFC-EGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFV 111 (240)
T ss_dssp GGTTTCSCEEEETCTT-THHHHHHHHH-TCCEEEECSCHHHHHHH-HTT--SEEECSCHHHHHHTSCTTCBSEEEEESCG
T ss_pred hhhcCCCeEEEEeCCC-CHHHHHHHhC-CCcEEEEECCHHHHHHH-Hhh--cceeeccHHHHhhhcCCCCeeEEEECCch
Confidence 3346889999998763 4455566665 88999999999988887 443 2233222222222333 4799998633
Q ss_pred ---CC---hhhHHHHHhccccCCEEEEec
Q 018246 256 ---SA---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 256 ---g~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
.. ...+..+.+.|+|+|+++...
T Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 112 EHLDPERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp GGSCGGGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred hhCCcHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 22 235788899999999998754
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.021 Score=49.19 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=50.2
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh-------------------hhHHHHH---HHcCC-cEE--ecC-C
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP-------------------KKESEAI---SKLGA-DAF--LVS-S 236 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~-------------------~~~~~~~---~~~g~-~~v--~~~-~ 236 (359)
+.+|+|+|+|++|..++..+...|. ++++++... .+.+.+. +++.. ..+ ++. -
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 107 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL 107 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 5789999999999999999999999 888886542 2333322 23331 122 111 1
Q ss_pred CHHHHHHhcCCccEEEECCCChh
Q 018246 237 DPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 237 ~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
+.+.+.++..++|+|++|.++..
T Consensus 108 ~~~~~~~~~~~~DvVi~~~d~~~ 130 (251)
T 1zud_1 108 TGEALKDAVARADVVLDCTDNMA 130 (251)
T ss_dssp CHHHHHHHHHHCSEEEECCSSHH
T ss_pred CHHHHHHHHhcCCEEEECCCCHH
Confidence 23344455557999999999765
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.062 Score=50.87 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=63.2
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH-
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP- 263 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~- 263 (359)
.+|.|+|.|.+|...+..+...|.+|.+.++++++.+.+.++.+...+....+......-.+..|+|+-++.....+..
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 3589999999999988888888999999999999988885554211122233332222212358999999987432433
Q ss_pred ---HHhccccCCEEEEecC
Q 018246 264 ---LLGLLKVNGKLVTVGL 279 (359)
Q Consensus 264 ---~~~~l~~~G~~v~~g~ 279 (359)
+...++++..++.++.
T Consensus 86 l~~l~~~l~~g~iiId~s~ 104 (474)
T 2iz1_A 86 IKSLLPLLDIGDILIDGGN 104 (474)
T ss_dssp HHHHGGGCCTTCEEEECSC
T ss_pred HHHHHhhCCCCCEEEECCC
Confidence 3345666666666643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 359 | ||||
| d1piwa1 | 192 | b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy | 1e-32 | |
| d1uufa1 | 179 | b.35.1.2 (A:3-144,A:313-349) Hypothetical protein | 1e-26 | |
| d1uufa2 | 168 | c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc | 3e-26 | |
| d1piwa2 | 168 | c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase | 4e-26 | |
| d1cdoa1 | 199 | b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase | 2e-21 | |
| d2fzwa1 | 197 | b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase | 2e-21 | |
| d1llua1 | 175 | b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase | 4e-21 | |
| d1e3ia1 | 202 | b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase | 4e-18 | |
| d1f8fa1 | 194 | b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr | 1e-17 | |
| d1kola1 | 201 | b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog | 5e-17 | |
| d1llua2 | 166 | c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom | 2e-16 | |
| d1vj0a1 | 184 | b.35.1.2 (A:2-155,A:338-367) Hypothetical protein | 2e-16 | |
| d1vj0a2 | 182 | c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T | 3e-16 | |
| d1p0fa1 | 198 | b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro | 1e-15 | |
| d1rjwa2 | 168 | c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu | 4e-15 | |
| d1rjwa1 | 171 | b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase | 5e-15 | |
| d1h2ba2 | 172 | c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo | 2e-14 | |
| d1e3ja1 | 178 | b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor | 2e-14 | |
| d1f8fa2 | 174 | c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase { | 1e-13 | |
| d1pl8a1 | 185 | b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor | 2e-13 | |
| d1p0fa2 | 174 | c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog | 3e-13 | |
| d2fzwa2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 9e-13 | |
| d2jhfa1 | 198 | b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase | 1e-12 | |
| d2jhfa2 | 176 | c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse ( | 2e-12 | |
| d1jvba1 | 177 | b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase | 2e-12 | |
| d1e3ia2 | 174 | c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse ( | 1e-11 | |
| d1h2ba1 | 171 | b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas | 2e-11 | |
| d1d1ta2 | 176 | c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human ( | 2e-11 | |
| d1jqba2 | 174 | c.2.1.1 (A:1140-1313) Bacterial secondary alcohol | 4e-11 | |
| d1cdoa2 | 175 | c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga | 5e-11 | |
| d1jqba1 | 177 | b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon | 5e-11 | |
| d1jvba2 | 170 | c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo | 5e-10 | |
| d1tt7a1 | 162 | b.35.1.2 (A:2-127,A:295-330) Hypothetical protein | 7e-07 | |
| d1iz0a1 | 131 | b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase | 8e-06 | |
| d1yb5a2 | 174 | c.2.1.1 (A:121-294) Quinone oxidoreductase {Human | 2e-05 | |
| d1iz0a2 | 171 | c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus | 1e-04 | |
| d1qora2 | 179 | c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher | 2e-04 | |
| d1xa0a1 | 152 | b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo | 2e-04 | |
| d1gu7a2 | 189 | c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea | 0.001 | |
| d1o89a1 | 146 | b.35.1.2 (A:1-115,A:293-323) Hypothetical protein | 0.002 | |
| d1pqwa_ | 183 | c.2.1.1 (A:) Putative enoyl reductase domain of po | 0.004 |
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 118 bits (296), Expect = 1e-32
Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 5/172 (2%)
Query: 9 HPQKAIGWAARD--NTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNY 66
+P+K G A + + + + D+ IKI CG+C SD+HCA WG
Sbjct: 3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKM 62
Query: 67 PIVPGHEIVGTVTKVGNNVSK-FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYN 125
P+V GHEIVG V K+G + K G +VGVG V SC +C+ C+ E YC + TY+
Sbjct: 63 PLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYS 122
Query: 126 SIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI-TVYSPMK 176
DG + GGY++ + V +H+V+ P+N+ ++ P+ AG+ + M+
Sbjct: 123 QPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVET-LPVGEAGVHEAFERME 173
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 1e-26
Identities = 78/174 (44%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 12 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPG 71
KA+ A P +RRE G +DV I+I +CG+CHSDLH R+EW T YP VPG
Sbjct: 2 KAV--GAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPG 59
Query: 72 HEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDG 131
HEIVG V VG+ V K+ GD VGVG +V SC+ CE C+ GLENYC +M TYNS D
Sbjct: 60 HEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDE 119
Query: 132 T-KTYGGYSDLIVVDQHYVLRFPD-NMPLDAGAPLLCAGITVY-SPMKYYGMTE 182
T GGYS IVV + YVLR ++ + + A + +KY + +
Sbjct: 120 PGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVKYRFVID 173
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 3e-26
Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 3/166 (1%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
L A APLLCAGIT YSP++++ PGK +GV G+GGLGH+ +K+ A G V T+
Sbjct: 5 QLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAF-TT 62
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVT 276
+ + EA LGAD + S + ++ A + + D+I++TV+A H+L LLK +G +
Sbjct: 63 SEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTL 122
Query: 277 VGLPEKPLEVP-IFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321
VG P P + P +F L+ RR + GS +GG+ ETQEMLDFCA+H I
Sbjct: 123 VGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI 168
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (249), Expect = 4e-26
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 5/169 (2%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+P APLLC G+TVYSP+ G PGK +G+ GLGG+G + I KA G T + +
Sbjct: 1 IPSHLAAPLLCGGLTVYSPLVRNGC-GPGKKVGIVGLGGIGSMGTLISKAMG-AETYVIS 58
Query: 216 SPKKESEAISKLGADAFLVSSD-PAKVKAAMGTMDYIIDTVSAVHSL--APLLGLLKVNG 272
++ E K+GAD ++ + + + T D I+ S++ + + +KV G
Sbjct: 59 RSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGG 118
Query: 273 KLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321
++V++ +PE+ + + + S +G +KE ++L ++ +I
Sbjct: 119 RIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDI 167
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 88.8 bits (219), Expect = 2e-21
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
A+++ IKI+ G+CH+DL+ +P+V GHE G V VG V++F+ G
Sbjct: 28 VDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPG 87
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKT--------------YGG 137
+KV + + ++ C +C CQ N C + +T
Sbjct: 88 EKV-IPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTST 146
Query: 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGK 185
+S VV+Q V + ++ LD +V + + +
Sbjct: 147 FSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIR 194
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 88.8 bits (219), Expect = 2e-21
Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 15/168 (8%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
A +V IKI+ +CH+D + +P++ GH G V VG V+K K G
Sbjct: 26 VAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKLKAG 85
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTY--------------GG 137
D V + + + C +C+ C N C + +T +
Sbjct: 86 DTV-IPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTST 144
Query: 138 YSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGK 185
+S+ VV V + + +D + + + + +
Sbjct: 145 FSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIR 192
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 86.9 bits (214), Expect = 4e-21
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNY-PIVPGHEIVGTVTKVGNNVSKFKEGDKV 94
G V +KI G+CH+DLH A +W V P +PGHE VG V VG+ V++ KEGD+V
Sbjct: 29 GPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRV 88
Query: 95 GVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPD 154
G+ L +C CE C G E C + T S++ Y++ ++ D +YV P
Sbjct: 89 GIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGG-------YAEYVLADPNYVGILPK 141
Query: 155 NMPLDAGAPLLCAGITVYSPMK 176
N+ L + M+
Sbjct: 142 NVKATIHPGKLDDINQILDQMR 163
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 79.5 bits (195), Expect = 4e-18
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 20/158 (12%)
Query: 33 RETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92
A +V I+++ +C +D++ + +P+V GHE G V VG V+ FK GD
Sbjct: 29 SPPKACEVRIQVIATCVCPTDINA-TDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGD 87
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNM------------------ILTYNSIDRDGTKT 134
KV + C++C+ C L N C + T
Sbjct: 88 KV-IPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMG 146
Query: 135 YGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVY 172
+S VV + + R D LD ++
Sbjct: 147 VSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESIN 184
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 78.1 bits (191), Expect = 1e-17
Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 44/197 (22%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
R+ D+V +K++ G+CH+DL R++ P V GHE G + +G NV++ + G
Sbjct: 23 IRQPQGDEVLVKVVATGMCHTDLI-VRDQKYPVPLPAVLGHEGSGIIEAIGPNVTELQVG 81
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTY----------------NSIDRDGTKTY 135
D V + C KC C G YC + D
Sbjct: 82 DHVVLSY--GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQ 139
Query: 136 GGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGL 195
++ + ++ ++ + P D +
Sbjct: 140 SSFATYALSRENNTVKVTKDFPFDQLVKFYAF-------------------------DEI 174
Query: 196 GHVAVKIGKAFGLKVTV 212
A+ K LK +
Sbjct: 175 NQAAIDSRKGITLKPII 191
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 76.5 bits (187), Expect = 5e-17
Identities = 25/181 (13%), Positives = 50/181 (27%), Gaps = 12/181 (6%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
R + V +K++ IC SD H R + + + +
Sbjct: 27 RGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQ--VGLVLGHEITGEVIEKGRDVENLQI 84
Query: 92 DKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDR---DGTKTYGGYSDLIVVD--Q 146
+ +C +C SC++ C + D GG ++ ++V
Sbjct: 85 GDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYAD 144
Query: 147 HYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF 206
+L+ PD + + + + G G + K F
Sbjct: 145 FNLLKLPDRDKAMEKINIAEVVGVQ-----VISLDDAPRGYGEFDAGVPKKFVIDPHKTF 199
Query: 207 G 207
Sbjct: 200 S 200
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 73.6 bits (179), Expect = 2e-16
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 5/166 (3%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+ AP+LCAG+TVY +K PG+ + ++G+GGLGHVAV+ +A GL V I
Sbjct: 1 VEFAEIAPILCAGVTVYKGLKQTNAR-PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDI 59
Query: 216 SPKKESEAISKLGADAFL---VSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNG 272
K E KLGA + ++ +G ++ T + + +G+ + G
Sbjct: 60 DDAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGG 118
Query: 273 KLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318
+ VGLP PIF +V + GS VG + QE LDF +
Sbjct: 119 TIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGE 164
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 74.1 bits (181), Expect = 2e-16
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEG 91
+ + ++IL G+C SD+H R E PI+ GHE G V +V
Sbjct: 24 ISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDLNGE 83
Query: 92 D----KVGVGVLVASCQKCESCQQGLE-NYCPNM-ILTYNSIDRDGTKTYGGYSDLIVVD 145
+ V +C +C C+ E CPN + N + G YS IV+D
Sbjct: 84 LLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLD 143
Query: 146 -QHYVLRFPDNMPLDAGAPLLCAGITV 171
+ VL+ + + PL A +
Sbjct: 144 PETDVLKVSEKITHR--LPLKEANKAL 168
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Score = 73.4 bits (179), Expect = 3e-16
Identities = 35/173 (20%), Positives = 67/173 (38%), Gaps = 11/173 (6%)
Query: 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217
LD A +C+G T Y Y + GK + + G G LG V I ++ G + ++
Sbjct: 3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62
Query: 218 KKESEAISKLGADAFLVSSD---PAKVKAAMGTM-----DYIIDTVSAVHSLAPLLGLLK 269
+ ++GAD L + + KA M D+I++ +L LL+
Sbjct: 63 PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122
Query: 270 VNGKLVTVGL--PEKPLEVPIFALVGARRL-VGGSNVGGMKETQEMLDFCAKH 319
G G+ P+ P+ ++ + + G V + + +++
Sbjct: 123 RGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRN 175
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 72.2 bits (176), Expect = 1e-15
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 26/176 (14%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V IKIL GIC SD E + +P++ GHE VG V +G V+ K GDKV
Sbjct: 32 KAHEVRIKILASGICGSD-SSVLKEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKV- 89
Query: 96 VGVLVASCQKCESCQQGLENYCPNM-ILTYNSIDRDGTKTY-------------GGYSDL 141
+ + V C C +C+ N+C + + D T + +++
Sbjct: 90 IPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEY 149
Query: 142 IVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197
VV V + + ++ + L +G G
Sbjct: 150 TVVADIAVAKIDPKINVNFLVSTKLTLDQI----------NKAFELLSSGQGVRSI 195
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.1 bits (170), Expect = 4e-15
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 3/168 (1%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+ + AP+ CAG+T Y +K G PG+ + + G+GGLGHVAV+ KA GL V +
Sbjct: 1 LSFEEAAPIFCAGVTTYKALKVTGAK-PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDI 59
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAMGTMD--YIIDTVSAVHSLAPLLGLLKVNGK 273
+K A + A + T + + ++ G
Sbjct: 60 GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGA 119
Query: 274 LVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHNI 321
V VGLP + + +PIF V + GS VG K+ QE L F A+ +
Sbjct: 120 CVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKV 167
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.0 bits (170), Expect = 5e-15
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 32 RRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVP-GHEIVGTVTKVGNNVSKFKE 90
+ +V ++I CG+CH+DLH A +W V + GHE VG V +VG V+ K
Sbjct: 20 KPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKV 79
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD+VG+ L ++C C+ C G E C + GGY++ YV+
Sbjct: 80 GDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY-------SVDGGYAEYCRAAADYVV 132
Query: 151 RFPDNMPLDAGAPLLCAGITVY 172
+ PDN ++ PL
Sbjct: 133 KIPDNTIIEV-QPLEKINEVFD 153
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 68.8 bits (167), Expect = 2e-14
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 6/162 (3%)
Query: 162 APLLCAGITVYSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKE 220
APL AGIT Y +K PG ++ + G+GGLGH+AV++ K + +++
Sbjct: 10 APLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEK 69
Query: 221 SEAISKLGADAFLVSSDPA----KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVT 276
+ +LGAD + + ++ +D V + ++ LL G+L+
Sbjct: 70 LKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLII 129
Query: 277 VGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318
VG L P ++ + GS VG E E++ +
Sbjct: 130 VG-YGGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQ 170
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Score = 68.9 bits (167), Expect = 2e-14
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 11/161 (6%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E D+V +++ + GIC SD+H + + P+V GHE GTV KVG NV K+
Sbjct: 22 EPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK 81
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD+V V V C++C+ C++G N CP++ D Y + +
Sbjct: 82 GDRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVH------AADFCH 134
Query: 151 RFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG 191
+ PDN + + + V
Sbjct: 135 KLPDNCNVKQLVTHSFKLEQTVDAFEAARKK-ADNTIKVMI 174
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 66.5 bits (161), Expect = 1e-13
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 6/163 (3%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+P++ PL C T P G G +G A+ K G + +
Sbjct: 1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIIDTVSAVHSLAPLLGLLKVN 271
+ E +LGA + S V A G +++ +++ + L + L +
Sbjct: 61 IVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL 120
Query: 272 GKLVTVGLPEKP--LEVPIFALVGARRLVGGSNVGGMKETQEM 312
GK+ VG P+ + + L+ + + G G + +
Sbjct: 121 GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFI 163
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (159), Expect = 2e-13
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 34 ETGADDVTIKILFCGICHSDLH---CARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90
E G ++V +++ GIC SD+H R + P+V GHE GTV KVG++V K
Sbjct: 28 EPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKP 87
Query: 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVL 150
GD+V + A + E C+ G N P++ D + + +
Sbjct: 88 GDRVAI-EPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRF------YKHNAAFCY 140
Query: 151 RFPDNMPLDAGAPL-LCAGITVYSPMK 176
+ PDN+ L + + K
Sbjct: 141 KLPDNVKPLVTHRFPLEKALEAFETFK 167
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Score = 65.3 bits (158), Expect = 3e-13
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 13/173 (7%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
PL++ + C T Y PG V GLGG+G A+ KA G + +
Sbjct: 2 PLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT 60
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKAAM-------GTMDYIIDTVSAVHSLAPLLGLLK 269
K + +LGA L D K + G + + L
Sbjct: 61 HKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC 120
Query: 270 VNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGG--MKETQEMLDFCAK 318
+G V +GL +P+ L+ R L GS GG +E ++D K
Sbjct: 121 GSGVTVVLGLASPNERLPLDPLLLLTGRSLK-GSVFGGFKGEEVSRLVDDYMK 172
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 63.8 bits (154), Expect = 9e-13
Identities = 33/164 (20%), Positives = 50/164 (30%), Gaps = 8/164 (4%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
PLD L C T Y EPG V GLGG+G + K G +
Sbjct: 2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61
Query: 217 PKKESEAISKLGADAFLVSSDP------AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKV 270
K + + GA + D ++ G +DY + + V + L
Sbjct: 62 NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK 121
Query: 271 NGKLVTVGL--PEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312
+ V + R G+ GG K + +
Sbjct: 122 GWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESV 165
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 63.7 bits (154), Expect = 1e-12
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVG 95
A +V IK++ GIC SD H I HE G V +G V+ + GDKV
Sbjct: 32 KAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAG-HEAAGIVESIGEGVTTVRPGDKV- 89
Query: 96 VGVLVASCQKCESCQQGLENYCPNMILT-YNSIDRDGTKTY-------------GGYSDL 141
+ + C KC C+ N+C L+ +DGT + +S
Sbjct: 90 IPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQY 149
Query: 142 IVVDQHYVLRFPDNMPLD--AGAPLLCAGITV 171
VVD+ V + LD L I
Sbjct: 150 TVVDEISVAKIDAAFALDPLITHVLPFEKINE 181
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Score = 63.1 bits (152), Expect = 2e-12
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 8/164 (4%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
PL+ + C T Y G V GLGG+G + KA G +
Sbjct: 2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKAA------MGTMDYIIDTVSAVHSLAPLLGLLKV 270
K + ++GA + D K G +D+ + + + ++ L +
Sbjct: 62 NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE 121
Query: 271 NG--KLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312
++ P+ L+ + R G+ GG K +
Sbjct: 122 AYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSV 165
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 62.7 bits (151), Expect = 2e-12
Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 17/146 (11%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWG--------VTNYPIVPGHEIVGTVTKVGNNVSK 87
V IK+ G+CHSD+H + +G P+ GHEI G + +VG+ V
Sbjct: 24 KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVG 83
Query: 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVV-DQ 146
+ +GD V V C C+ G E+ C + G G Y++ ++V
Sbjct: 84 YSKGDLVAVNPWQGEGN-CYYCRIGEEHLCDSP-------RWLGINFDGAYAEYVIVPHY 135
Query: 147 HYVLRFPDNMPLDAGAPLLCAGITVY 172
Y+ + P+ L
Sbjct: 136 KYMYKLRRVKPMITKTMKLEEANEAI 161
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Score = 60.7 bits (146), Expect = 1e-11
Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 8/163 (4%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
L+ + C + Y PG V GLG +G A+ K G +
Sbjct: 2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDYIIDTVSAVHSL-APLLGLLK 269
++ LGA L + K + G +DY +D +L A + +
Sbjct: 62 NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL 121
Query: 270 VNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312
G VG + +P ++ R + G+ GG K +
Sbjct: 122 GWGSCTVVGAKVDEMTIPTVDVILGRSIN-GTFFGGWKSVDSV 163
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 59.7 bits (143), Expect = 2e-11
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 11/144 (7%)
Query: 36 GADDVTIKILFCGICHSDLHCARNEWGVTNYP---IVPGHEIVGTVTKVGNNVSKFKEGD 92
G DV ++I G+CH+DLH + W P GHE VG + +V V ++GD
Sbjct: 24 GRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGD 83
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
V + + C +C+ G + +C N+ G GG+++ + V++
Sbjct: 84 PV-ILHPAVTDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSVIKL 135
Query: 153 PDNMPLDAGAPLLCAGITVYSPMK 176
P ++ ++ L V ++
Sbjct: 136 PKDVRVEVDIHKLDEINDVLERLE 159
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Score = 59.9 bits (144), Expect = 2e-11
Identities = 33/166 (19%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
P + + C T Y G +PG V GLGG+G + K+ G +
Sbjct: 2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAMGT-------MDYIIDTVSAVHSLAPLLGLL 268
K + E +GA + D K + + + + L
Sbjct: 62 LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121
Query: 269 KVNGKLVTVGLPEKPLEVPI--FALVGARRLVGGSNVGGMKETQEM 312
G V VG+P + L R G GG+K ++
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWK-GCVFGGLKSRDDV 166
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 58.8 bits (141), Expect = 4e-11
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 10/167 (5%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
MPL+ + T + + + E G + V G+G +G + + K G +
Sbjct: 1 MPLENAVMITDMMTTGFHGAELADI-EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAMGT-----MDYIIDTVSAVHSLAPLLGLLKV 270
S EA GA L + M +D +I +L+ + ++K
Sbjct: 60 SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP 119
Query: 271 NGKLVTVGLPEKPLEVPI----FALVGARRLVGGSNVGGMKETQEML 313
G + + + I + A + + G G + E L
Sbjct: 120 GGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERL 166
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Score = 58.9 bits (141), Expect = 5e-11
Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 7/163 (4%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
PLD L C T + EPG V GLG +G AV + G K +
Sbjct: 2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKAAM------GTMDYIIDTVSAVHSLAPLLGL-LK 269
+ E GA F+ +D ++ + + G +D+ ++ V V + L LK
Sbjct: 62 NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK 121
Query: 270 VNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312
G V VG + + A R GS GG K +
Sbjct: 122 GWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGV 164
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Score = 58.8 bits (141), Expect = 5e-11
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 14/169 (8%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
G+ D ++ L C SD+H ++ GHE VG V +VG+ V FK GD+
Sbjct: 21 VAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDR 80
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V V + Q G + + M+ + + +G Y + + P
Sbjct: 81 VIV-PCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKD-GVFGEYF-HVNDADMNLAILP 137
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
++ L + G + L + + +
Sbjct: 138 KDVDLSKLVTHVYHGFDH-----------IEEALLLMKDKPKDLIKAVV 175
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 55.9 bits (133), Expect = 5e-10
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 6/167 (3%)
Query: 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216
++A APL C+GIT Y ++ + L V GGLG +AV+I KA +
Sbjct: 3 AVEA-APLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV 61
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKA-----AMGTMDYIIDTVSAVHSLAPLLGLLKVN 271
++ EA + GAD + +S + +D +ID ++ +L+ L
Sbjct: 62 REEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ 121
Query: 272 GKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAK 318
GK V VGL L + + GS VG + ++
Sbjct: 122 GKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEA 168
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 28/169 (16%), Positives = 46/169 (27%), Gaps = 33/169 (19%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ D V IK+ + GI + D + + + ++ + G VS
Sbjct: 27 DLPKDGVLIKVAYSGINYKDGLAGKAGGNIVRE-----YPLILGIDAAGTVVSSNDPRFA 81
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
G V+ S + S GL Y V +++ P
Sbjct: 82 EGDEVIATSYELGVSRDGGLSEYA-------------------------SVPGDWLVPLP 116
Query: 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKI 202
N+ L I PG + G V VK+
Sbjct: 117 QNLSLKEAMVDQLLTIVDREVSL---EETPGALKDILQNRIQGRVIVKL 162
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Score = 42.9 bits (100), Expect = 8e-06
Identities = 8/79 (10%), Positives = 20/79 (25%)
Query: 103 CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA 162
+ ++ GG ++ + V + +L P+ P+
Sbjct: 46 LGAYLTRLHPPFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPV 105
Query: 163 PLLCAGITVYSPMKYYGMT 181
+ + G T
Sbjct: 106 FPFAEAEAAFRALLDRGHT 124
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 7/165 (4%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+ GA + T Y + + + G+ + V G G +A + +
Sbjct: 1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA 60
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAMGTM----DYIIDTVSAVHSLAPLLGLLKVN 271
++ + + + GA + + + II + A +L+ L LL
Sbjct: 61 GTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHG 120
Query: 272 GKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM--KETQEMLD 314
G+++ VG +E+ + + G + +E Q+
Sbjct: 121 GRVIVVGSRG-TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAA 164
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 4/165 (2%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215
+ + A + +T Y +K PG+ + V G A + +
Sbjct: 1 LSPEEAAAFPVSFLTAYLALKRAQAR-PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAA 59
Query: 216 SPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLV 275
S ++ LGA+ ++ + A G +D +++ + LGLL G+LV
Sbjct: 60 SRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVEESLGLLAHGGRLV 117
Query: 276 TVGLPE-KPLEVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKH 319
+G E + +P L+ V G + + +++
Sbjct: 118 YIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGF 162
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISTS 216
+ A G+TVY ++ +P + G +G +A + KA G K+ +
Sbjct: 3 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGT 62
Query: 217 PKKESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIIDTVSAVHSLAPLLGLLKVNG 272
+K ++ K GA + + V+ G ++ + L L+ G
Sbjct: 63 AQKA-QSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRG 121
Query: 273 KLVTVGLPEKPLEVPIFALVGARR--LVGGSNVGGMKETQEMLDFCAKH 319
+V+ G + ++ + V ++ G T+E L +
Sbjct: 122 LMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNE 170
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 31/139 (22%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDK 93
+ DV +++ + + + D + + + I V + +F+EGD+
Sbjct: 27 DLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYP-FVPGIDLAGVVVSSQHPRFREGDE 85
Query: 94 VGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFP 153
V + G +GGYS+ + +++ P
Sbjct: 86 V-----------------------------IATGYEIGVTHFGGYSEYARLHGEWLVPLP 116
Query: 154 DNMPLDAGAPLLCAGITVY 172
+ A + A +
Sbjct: 117 KGLERIA-QEISLAELPQA 134
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Score = 37.3 bits (85), Expect = 0.001
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV--AGLGGLGHVAVKIGKAFGLKVTVI 213
+ ++ GA + +T Y + +Y PGK + G +G A +IGK +
Sbjct: 1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60
Query: 214 STSPKKESEA---ISKLGADAFLVSSDP----------AKVKAAMGTMDYIIDTVSAVHS 260
E + +LGA + +K + G ++ V S
Sbjct: 61 IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS 120
Query: 261 LAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKET 309
L L G+ +P+ +P + G V + +
Sbjct: 121 TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKN 169
|
| >d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 32/138 (23%)
Query: 34 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPI-VPGHEIVGTVTKVGNNVSKFKEGD 92
DVT+ + + + + D + + +PG + GTV +
Sbjct: 24 RLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFH----- 78
Query: 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRF 152
G VL+ E+ +GG ++ V +++
Sbjct: 79 -AGQEVLLTGWGVGEN-------------------------HWGGLAEQARVKGDWLVAM 112
Query: 153 PDNMPLDAGAPLLCAGIT 170
P +
Sbjct: 113 PQGQAAKEISLSEAPNFA 130
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 35.8 bits (81), Expect = 0.004
Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 10/171 (5%)
Query: 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218
+ A A +T + + G PG+ + + G +A +
Sbjct: 1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 60
Query: 219 KESEAISKLGADAFLVSSDPAKVKAAM----GTMDYIIDTVSAVHSLAPLLGLLKVNGKL 274
+ E +S+LG + S + G ++ A ++ + +L G+
Sbjct: 61 AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRF 120
Query: 275 VTVGLPEKPLEVPIFALVGARRL------VGGSNVGGMKETQEMLDFCAKH 319
+ +G + + + A+ + + +++L +H
Sbjct: 121 IELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQH 171
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 359 | |||
| d1piwa1 | 192 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 100.0 | |
| d1cdoa1 | 199 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 100.0 | |
| d1llua1 | 175 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 100.0 | |
| d1e3ja1 | 178 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 100.0 | |
| d1h2ba1 | 171 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 100.0 | |
| d1f8fa1 | 194 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 100.0 | |
| d2fzwa1 | 197 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 100.0 | |
| d1e3ia1 | 202 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 100.0 | |
| d1vj0a1 | 184 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.98 | |
| d1jqba1 | 177 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.98 | |
| d1pl8a1 | 185 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.98 | |
| d1kola1 | 201 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.98 | |
| d1rjwa1 | 171 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.97 | |
| d1uufa1 | 179 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.97 | |
| d1jvba1 | 177 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.97 | |
| d2jhfa1 | 198 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.97 | |
| d1p0fa1 | 198 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.97 | |
| d1yb5a1 | 150 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.97 | |
| d1qora1 | 147 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.96 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.95 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 99.95 | |
| d1xa0a1 | 152 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.95 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 99.95 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 99.95 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 99.94 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 99.94 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 99.94 | |
| d1iz0a1 | 131 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.94 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 99.94 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 99.93 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 99.93 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 99.93 | |
| d1o89a1 | 146 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 99.93 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 99.93 | |
| d1tt7a1 | 162 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.92 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 99.92 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 99.92 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 99.92 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.91 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 99.91 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.91 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.91 | |
| d1gu7a1 | 175 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 99.9 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 99.9 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 99.9 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 99.89 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 99.89 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.88 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.88 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 99.87 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 99.85 | |
| d1vj1a1 | 166 | Putative zinc-binding alcohol dehydrogenase {Mouse | 99.65 | |
| d1v3va1 | 147 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 99.61 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 99.42 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.62 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.44 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.2 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 98.04 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 97.98 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 97.94 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 97.92 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 97.88 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 97.84 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 97.84 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 97.83 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.83 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.83 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.83 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 97.81 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.79 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 97.78 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.78 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 97.77 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 97.76 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.74 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.74 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 97.74 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.71 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 97.71 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 97.69 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 97.69 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.68 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 97.66 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 97.65 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 97.61 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.57 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.55 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.54 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.52 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 97.52 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.52 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.49 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.48 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 97.44 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.43 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.42 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 97.42 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 97.4 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 97.4 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 97.38 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 97.37 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 97.37 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 97.36 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.36 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 97.36 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 97.35 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.32 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 97.3 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.29 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.28 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 97.27 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 97.27 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.27 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 97.25 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 97.25 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 97.24 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 97.23 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.2 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.18 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 97.14 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 97.12 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 97.09 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.05 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.05 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.04 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 97.03 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 97.03 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 97.02 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 96.98 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 96.98 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 96.97 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 96.95 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.93 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 96.88 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.86 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 96.85 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 96.79 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 96.78 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 96.77 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 96.76 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.74 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.73 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 96.71 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 96.71 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.67 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.66 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 96.64 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 96.63 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.62 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 96.61 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 96.58 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 96.55 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 96.54 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 96.51 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.45 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.41 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.41 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.41 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.39 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 96.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 96.36 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.36 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.34 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 96.32 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.28 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 96.27 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 96.2 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.18 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.15 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 96.13 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.11 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 96.11 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 96.07 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.03 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 95.96 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.92 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 95.92 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.89 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.86 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.79 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.78 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 95.74 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.7 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 95.66 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 95.62 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 95.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 95.58 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 95.58 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 95.52 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 95.44 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.42 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.35 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.34 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.32 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.31 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 95.3 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.25 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.24 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.22 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.19 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 95.19 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 95.14 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.08 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.07 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.07 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.04 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.99 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 94.9 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.89 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.88 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 94.86 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.86 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.84 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 94.84 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 94.82 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 94.81 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 94.8 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.8 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 94.77 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 94.7 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.68 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.63 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 94.59 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.49 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 94.45 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 94.45 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 94.4 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.3 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.3 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.28 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 94.27 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.25 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 94.24 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.24 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.21 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 94.2 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.19 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.19 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 94.19 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.15 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 94.1 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 94.07 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 94.0 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.99 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.92 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.88 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 93.8 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 93.8 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.72 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 93.7 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 93.7 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.67 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 93.66 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.65 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.63 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.61 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.58 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 93.54 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 93.51 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.5 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 93.48 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 93.48 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.48 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 93.47 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 93.41 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 93.38 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.36 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 93.36 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.36 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 93.17 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 93.17 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.1 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.03 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.02 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.98 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.97 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 92.95 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 92.88 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 92.88 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 92.75 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 92.74 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 92.71 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.71 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.69 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.68 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.68 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.67 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.58 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 92.55 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.53 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 92.48 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.42 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.42 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 92.37 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 92.31 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 92.3 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 92.25 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 92.25 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.15 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 92.02 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 91.93 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.91 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.82 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.81 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 91.78 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 91.74 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.68 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.59 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 91.52 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.3 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 91.29 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.28 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 91.04 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 91.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.94 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.92 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 90.91 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 90.81 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.8 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 90.76 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.74 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 90.6 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 90.51 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.48 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 90.47 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.36 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 90.31 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.21 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 90.18 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 90.17 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 90.16 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 90.16 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 90.14 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 90.13 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.96 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 89.95 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 89.91 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 89.89 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 89.87 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 89.59 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 89.49 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 89.4 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 89.3 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 89.26 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 89.16 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 89.06 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 89.05 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.0 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 88.78 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 88.75 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 88.7 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 88.67 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 88.57 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 88.52 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 88.39 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 88.31 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.13 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 88.01 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 88.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 87.93 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 87.71 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 87.68 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 87.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 87.61 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 87.6 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 87.48 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 87.4 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.37 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 87.31 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 87.25 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.19 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 87.19 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 87.11 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 87.09 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 86.74 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 86.6 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 86.18 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 86.12 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 86.08 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 86.07 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 85.41 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.27 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 85.04 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 84.71 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 84.7 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 84.48 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 84.47 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 84.34 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 84.24 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 83.99 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 83.64 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 83.61 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 83.39 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 83.31 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 82.26 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 81.77 | |
| d1p3ha_ | 99 | Chaperonin-10 (GroES) {Mycobacterium tuberculosis | 81.73 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 81.65 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.55 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 81.26 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 81.11 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.34 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 80.22 |
| >d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-35 Score=247.89 Aligned_cols=182 Identities=31% Similarity=0.562 Sum_probs=161.8
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCC-
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNV- 85 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v- 85 (359)
.|.+|+++++...+....+++.+++.++++++|||||+.++|||++|++++.|.++...+|+++|||++|+|+++|+++
T Consensus 3 ~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v~ 82 (192)
T d1piwa1 3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN 82 (192)
T ss_dssp TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred CCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhcccccc
Confidence 5678899988876666778888887777899999999999999999999999988878889999999999999999998
Q ss_pred CCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCcccccccc
Q 018246 86 SKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLL 165 (359)
Q Consensus 86 ~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~ 165 (359)
+.+++||||.+.+....|+.|.+|+.|.++.|.++...+.....+|...+|+|+||+++|+++++++|++++++.|+.+.
T Consensus 83 ~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~ 162 (192)
T d1piwa1 83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGE 162 (192)
T ss_dssp SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSH
T ss_pred cccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHHH
Confidence 56999999998888889999999999999999999887777777788899999999999999999999999998876655
Q ss_pred chhhhhhhHhHhcCCCCCCCEEEE
Q 018246 166 CAGITVYSPMKYYGMTEPGKHLGV 189 (359)
Q Consensus 166 ~~~~ta~~~l~~~~~~~~g~~VlI 189 (359)
+...|||+++.. +.+++|++|||
T Consensus 163 ~~~~ta~~~l~~-~~vk~g~~Vvv 185 (192)
T d1piwa1 163 AGVHEAFERMEK-GDVRYRFTLVG 185 (192)
T ss_dssp HHHHHHHHHHHH-TCCSSEEEEEC
T ss_pred HHHHHHHHHHHH-hCCCCCCEEEE
Confidence 556799999965 56699999887
|
| >d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=100.00 E-value=5.9e-35 Score=245.67 Aligned_cols=181 Identities=22% Similarity=0.244 Sum_probs=154.0
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
.+|+..+...+....++++++++.|+|+++||||||.++|||++|++.+.|......+|.++|||++|+|+++|+++++|
T Consensus 5 ~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v~~~ 84 (199)
T d1cdoa1 5 KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEF 84 (199)
T ss_dssp SCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTCCSC
T ss_pred CceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCCcee
Confidence 34554444444445569999999999999999999999999999999999977767789999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCccccccccccc-CCCC-------------CCCCccceEEEeeCCceEECCC
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSID-RDGT-------------KTYGGYSDLIVVDQHYVLRFPD 154 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~-~~g~-------------~~~g~~a~~~~~~~~~~~~lp~ 154 (359)
++||||++.+.. .|+.|.+|+.|.++.|.+......... ..+. ...|+|+||+++|+++++++|+
T Consensus 85 ~~GdrV~~~~~~-~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~ 163 (199)
T d1cdoa1 85 QPGEKVIPLFIS-QCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDP 163 (199)
T ss_dssp CTTCEEEECSSC-CCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCT
T ss_pred cCCCEEEEeeec-cccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCC
Confidence 999999776655 999999999999999988644432221 1111 1259999999999999999999
Q ss_pred CCCccccccccchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 155 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
++++++++++.+++.|++.++...+..+.|++|||+
T Consensus 164 ~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~ 199 (199)
T d1cdoa1 164 SVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199 (199)
T ss_dssp TSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 999999999999999999999999888899999984
|
| >d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.2e-34 Score=239.33 Aligned_cols=174 Identities=31% Similarity=0.512 Sum_probs=154.4
Q ss_pred CCCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCC
Q 018246 6 ETEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNN 84 (359)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~ 84 (359)
++|.+||++++..+++ .+++++++.|.|+++||||||++++||++|++.++|.++ ...+|.++|||++|+|+++|++
T Consensus 1 ~~P~tMkA~v~~~~g~--pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~ 78 (175)
T d1llua1 1 TLPQTMKAAVVHAYGA--PLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSG 78 (175)
T ss_dssp CCCSEEEEEEBCSTTS--CCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTT
T ss_pred CcchhcEEEEEEeCCC--CCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCC
Confidence 3678999998875443 489999999999999999999999999999999999876 4568999999999999999999
Q ss_pred CCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccc
Q 018246 85 VSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPL 164 (359)
Q Consensus 85 v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l 164 (359)
++++++||||++.+....|+.|.+|..|.++.|.+.... |...+|+|+||+++|+++++++|++++++.++++
T Consensus 79 v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~-------G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~ 151 (175)
T d1llua1 79 VTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNT-------GYSVNGGYAEYVLADPNYVGILPKNVKATIHPGK 151 (175)
T ss_dssp CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEECTTTSEECCTTCCCCEEEEC
T ss_pred ccccccCCEEEeccccccCCccccccCCccccccccccc-------ccccccccceEEEechHHEEECCCCCChhHHHHH
Confidence 999999999988888889999999999999999987654 4567799999999999999999999999989888
Q ss_pred cchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 165 LCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 165 ~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
.+++.|+++.++ .+. .+|++|||+
T Consensus 152 ~~~~~t~~~~~~-~g~-~~G~~VLVl 175 (175)
T d1llua1 152 LDDINQILDQMR-AGQ-IEGRIVLEM 175 (175)
T ss_dssp GGGHHHHHHHHH-TTC-CSSEEEEEC
T ss_pred HhHHHHHHHHHH-hCC-CCCCEEEeC
Confidence 888899888775 445 479999984
|
| >d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=100.00 E-value=2.5e-35 Score=244.01 Aligned_cols=171 Identities=25% Similarity=0.396 Sum_probs=148.7
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
+|+++. + .+++|++++++.|+|+++|||||+++++||++|++.+++... ....|+++|||++|+|+++|++++
T Consensus 2 ~maAVl---~-g~~~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~ 77 (178)
T d1e3ja1 2 NLSAVL---Y-KQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK 77 (178)
T ss_dssp CEEEEE---E-ETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred ceEEEE---E-cCCcEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccC
Confidence 456664 3 355699999999999999999999999999999998877532 345678999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
+|++||||++.+.. .|+.|..|..|.++.|.+..+... ...+|+|+||+++|+++++++|+++++++++++++
T Consensus 78 ~~~~GdrV~~~~~~-~~~~c~~c~~g~~~~c~~~~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~ 150 (178)
T d1e3ja1 78 HLKKGDRVAVEPGV-PCRRCQFCKEGKYNLCPDLTFCAT------PPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSF 150 (178)
T ss_dssp SCCTTCEEEECCEE-CCSSSHHHHTTCGGGCTTCEETTB------TTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEE
T ss_pred CCCCCCEEEECccc-ccCCccccccCCccccccccceec------cccccccceeeeecccceeeCCCCCCHHHHHHHHh
Confidence 99999999876655 899999999999999988765432 24569999999999999999999999999999999
Q ss_pred hhhhhhhHhHhcCCCCCCCEEEEECC
Q 018246 167 AGITVYSPMKYYGMTEPGKHLGVAGL 192 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~~g~~VlI~G~ 192 (359)
++.|||++++.... ++|++|+|+|+
T Consensus 151 ~~~ta~~a~~~~~~-~~g~~VlVig~ 175 (178)
T d1e3ja1 151 KLEQTVDAFEAARK-KADNTIKVMIS 175 (178)
T ss_dssp EGGGHHHHHHHHHH-CCTTCSEEEEE
T ss_pred HHHHHHHHHHHhCC-CCCCEEEEEcc
Confidence 99999999976654 99999999875
|
| >d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=1.6e-33 Score=231.08 Aligned_cols=166 Identities=23% Similarity=0.433 Sum_probs=144.5
Q ss_pred ceeeeeecCCCCCccceeeecCCC-CCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCCC
Q 018246 12 KAIGWAARDNTGTFSPFHFSRRET-GADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
|+..+..+++ .|++++++.|++ +++||||||.+++||++|++.++|.++ ...+|.++|||++|+|+++|+++++
T Consensus 1 kA~~~~~~g~--pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~ 78 (171)
T d1h2ba1 1 KAARLHEYNK--PLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEG 78 (171)
T ss_dssp CEEEESSTTS--CCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCS
T ss_pred CEEEEEeCCC--CCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCc
Confidence 3445554333 389999999986 689999999999999999999988754 4567899999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||||++.+.. .|+.|..|..|.++.|.+..+. |...+|+|+||+++|+++++++|++++++.++++.++
T Consensus 79 ~~~GdrV~~~~~~-~cg~~~~c~~g~~~~c~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~ 150 (171)
T d1h2ba1 79 LEKGDPVILHPAV-TDGTCLACRAGEDMHCENLEFP-------GLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDE 150 (171)
T ss_dssp CCTTCEEEECSCB-CCSCSHHHHTTCGGGCTTCBCB-------TTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGG
T ss_pred CCCCCEEEEcCcc-CCCCcccccccccccccccccc-------eeecccccceeeeehhhcceecCCCCCHHHHHHHHhH
Confidence 9999999877665 8999999999999999887654 4456799999999999999999999999989999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEE
Q 018246 168 GITVYSPMKYYGMTEPGKHLGV 189 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI 189 (359)
+.|||++++. ..+ .|++|||
T Consensus 151 ~~ta~~al~~-~~~-~G~~VlI 170 (171)
T d1h2ba1 151 INDVLERLEK-GEV-LGRAVLI 170 (171)
T ss_dssp HHHHHHHHHT-TCC-SSEEEEE
T ss_pred HHHHHHHHHh-cCC-CCCEEEe
Confidence 9999999976 454 7999998
|
| >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=100.00 E-value=4.2e-33 Score=232.71 Aligned_cols=174 Identities=23% Similarity=0.432 Sum_probs=142.3
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
+|++.++. ..+++|++++++.|+|+++|||||+.+++||++|++++.|.++ .++|+++|||++|+|+++|+++++|+
T Consensus 3 ~~~Aav~~--~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~i~GHE~~G~V~~vG~~v~~~~ 79 (194)
T d1f8fa1 3 DIIAAVTP--CKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ 79 (194)
T ss_dssp EEEEEEBC--STTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred eeEEEEEc--CCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc-ccCCcccccceEEEeeecCccceeEc
Confidence 45554444 4556699999999999999999999999999999999999876 56899999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCccc-ccccccccCCC---------------CCCCCccceEEEeeCCceEECC
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNM-ILTYNSIDRDG---------------TKTYGGYSDLIVVDQHYVLRFP 153 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~-~~~~~~~~~~g---------------~~~~g~~a~~~~~~~~~~~~lp 153 (359)
+|||| +.+.. .|+.|.+|++|.++.|++. .+.+.+...+| ....|+|+||.++++.+++++|
T Consensus 80 vGDrV-v~~~~-~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip 157 (194)
T d1f8fa1 80 VGDHV-VLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT 157 (194)
T ss_dssp TTCEE-EECCC-CCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred cCcee-eeecc-cccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECC
Confidence 99999 55555 7999999999999999976 22222222221 1124899999999999999999
Q ss_pred CCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCe-EEEE
Q 018246 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVI 213 (359)
Q Consensus 154 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-V~~v 213 (359)
++++++++ +++.|+|++|++++|+|+.+|++ |+++
T Consensus 158 ~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV 193 (194)
T d1f8fa1 158 KDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI 193 (194)
T ss_dssp TTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred CCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 98876543 45678899999999999999994 5443
|
| >d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=100.00 E-value=8.8e-33 Score=231.46 Aligned_cols=179 Identities=20% Similarity=0.222 Sum_probs=151.1
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
.+||+.++. ...++|++++++.|+|+++||||||+++|||++|+++++|.+....+|.++|||++|+|+++|++|+++
T Consensus 5 ~~~kAav~~--~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~~ 82 (197)
T d2fzwa1 5 IKCKAAVAW--EAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTKL 82 (197)
T ss_dssp EEEEEEEBC--STTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred eEEEEEEEc--cCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCceec
Confidence 346776665 344559999999999999999999999999999999999987778889999999999999999999999
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCccccccc-ccccCC-------------CCCCCCccceEEEeeCCceEECCC
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY-NSIDRD-------------GTKTYGGYSDLIVVDQHYVLRFPD 154 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~-------------g~~~~g~~a~~~~~~~~~~~~lp~ 154 (359)
++||||++.+.. .|+.|.+|+.|.++.|.+..... .+...+ +....|+|+||+++|+.+++++|+
T Consensus 83 ~~GdrV~v~~~~-~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~ 161 (197)
T d2fzwa1 83 KAGDTVIPLYIP-QCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDP 161 (197)
T ss_dssp CTTCEEEECSSC-CCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred CCCCEEEEcccc-ccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCC
Confidence 999999877665 99999999999999998753321 111111 222349999999999999999999
Q ss_pred CCCccccccccchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 155 NMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 155 ~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
++++++++++.+++.|++.++.....-+.+++|||+
T Consensus 162 ~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi 197 (197)
T d2fzwa1 162 LIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 197 (197)
T ss_dssp TSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence 999999999999999999998766554788999874
|
| >d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=100.00 E-value=3.2e-32 Score=229.74 Aligned_cols=177 Identities=21% Similarity=0.275 Sum_probs=145.1
Q ss_pred CCcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCC
Q 018246 7 TEHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
.+.+||+.++.. ..+++++++++.|+|+++||||||.++|||++|++.++|.++ ..+|.++|||++|+|+++|++|+
T Consensus 5 ~~~~~KAaV~~~--~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V~ 81 (202)
T d1e3ia1 5 KVIKCKAAIAWK--TGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGVT 81 (202)
T ss_dssp SCEEEEEEEBCS--TTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTCC
T ss_pred CeEEEEEEEEcc--CCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCce
Confidence 344566666553 334599999999999999999999999999999999999876 56799999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccc-----c-------------CCCCCCCCccceEEEeeCCc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSI-----D-------------RDGTKTYGGYSDLIVVDQHY 148 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~-----~-------------~~g~~~~g~~a~~~~~~~~~ 148 (359)
++++||||++.+. ..|+.|.+|+.|.++.|.+........ . ..+....|+|+||+++|+.+
T Consensus 82 ~~~~GdrV~~~~~-~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~ 160 (202)
T d1e3ia1 82 NFKPGDKVIPFFA-PQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEAN 160 (202)
T ss_dssp SCCTTCEEEECSS-CCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred eccCCCEEEEEee-ccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhh
Confidence 9999999976655 499999999999999998764321110 0 01122349999999999999
Q ss_pred eEECCCCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 149 VLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 149 ~~~lp~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
++++|++++++.++++.+++.+++.++.. +++|++|.|+
T Consensus 161 l~~lP~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi 199 (202)
T d1e3ia1 161 LARVDDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTI 199 (202)
T ss_dssp EEECCTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEE
Confidence 99999999999989999988888887754 3678888775
|
| >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.98 E-value=1.6e-32 Score=226.48 Aligned_cols=173 Identities=21% Similarity=0.285 Sum_probs=139.2
Q ss_pred CcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCC-
Q 018246 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVS- 86 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~- 86 (359)
+.+||++++.. ..+.+++++++.|+|+++||||||.++|||++|+++++|.++...+|+++|||++|+|+++|++|+
T Consensus 2 ~~k~kA~v~~~--~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~ 79 (184)
T d1vj0a1 2 GLKAHAMVLEK--FNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRD 79 (184)
T ss_dssp CEEEEEEEBCS--TTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBC
T ss_pred CceEEEEEEec--CCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEeccccc
Confidence 34566666654 334599999999999999999999999999999999999887777899999999999999999986
Q ss_pred ----CCCCCCEEEEeccccCCCCCccccCCC-CCCCcccccc-cccccCCCCCCCCccceEEEee-CCceEECCCCCCcc
Q 018246 87 ----KFKEGDKVGVGVLVASCQKCESCQQGL-ENYCPNMILT-YNSIDRDGTKTYGGYSDLIVVD-QHYVLRFPDNMPLD 159 (359)
Q Consensus 87 ----~~~vGdrV~v~~~~~~~~~c~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~g~~a~~~~~~-~~~~~~lp~~l~~~ 159 (359)
.+++||||++.+.. +|+.|.+|+.|. ++.|.++... +.+........+|+|+||++++ +.+++++|++++++
T Consensus 80 ~~~~~~~~Gd~V~~~~~~-~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~ 158 (184)
T d1vj0a1 80 LNGELLKPGDLIVWNRGI-TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHR 158 (184)
T ss_dssp TTSCBCCTTCEEEECSEE-CCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEE
T ss_pred cccccccceeeeEecccc-ccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHH
Confidence 46799999766654 999999999998 5678876433 2222222334589999999996 57899999999976
Q ss_pred ccccccchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 160 AGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 160 ~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
+ ++.+|++++..... ++|++|||+
T Consensus 159 ~------pl~~A~~a~~~~~~-~~G~~VlI~ 182 (184)
T d1vj0a1 159 L------PLKEANKALELMES-REALKVILY 182 (184)
T ss_dssp E------EGGGHHHHHHHHHH-TSCSCEEEE
T ss_pred H------HHHHHHHHHHHhCC-CcCCEEEEe
Confidence 4 24566778876655 999999996
|
| >d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.98 E-value=8.8e-35 Score=239.03 Aligned_cols=171 Identities=19% Similarity=0.253 Sum_probs=138.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||++++.. ++++++++++.|.|+++|||||++++|||++|++.+.+......+|+++|||++|+|+++|+++++|++
T Consensus 1 MKa~v~~~---~~~l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~v 77 (177)
T d1jqba1 1 MKGFAMLG---INKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKP 77 (177)
T ss_dssp CEEEEEEE---TTEEEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCT
T ss_pred CeEEEEEe---CCCeEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecC
Confidence 78887774 345999999999999999999999999999999888766555678999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeC--CceEECCCCCCccccccccchh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQ--HYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~--~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
||||++.+.. .|++|.+|+.+.++.|.+..+.+. .|...+|+|+||+++|. .+++++|+++++++++......
T Consensus 78 GdrV~v~~~~-~cg~c~~C~~g~~~~c~~~~~~~~----~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~~ 152 (177)
T d1jqba1 78 GDRVIVPCTT-PDWRSLEVQAGFQQHSNGMLAGWK----FSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYHG 152 (177)
T ss_dssp TCEEEECSCC-CCSSSHHHHTTCGGGTTSTTTTCC----BTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEES
T ss_pred CCcEEEeeee-ccccccchhhhhhccccccccccc----ccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHHH
Confidence 9999876655 999999999999999988754321 13346799999999996 4699999999988775443322
Q ss_pred hhhhhHhHhcCCCCCCCEEEEECCchHHHHHH
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~ 200 (359)
+..+ ++.+|++|+|++|++++
T Consensus 153 ---~~~~--------~~~vlv~g~gp~gl~aa 173 (177)
T d1jqba1 153 ---FDHI--------EEALLLMKDKPKDLIKA 173 (177)
T ss_dssp ---GGGH--------HHHHHHHHHCCTTCSEE
T ss_pred ---HHHh--------cCceEEECCCHHHhhee
Confidence 2222 34477788888877554
|
| >d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=9e-33 Score=229.65 Aligned_cols=171 Identities=21% Similarity=0.326 Sum_probs=142.6
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC---CCCCCCcccccccEEEEEeCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG---VTNYPIVPGHEIVGTVTKVGNNVS 86 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~ 86 (359)
.+.++++. .++++++++++.|+|+++||||||.+++||++|++.+++... ...+|.++|||++|+|+++|++++
T Consensus 7 ~~~a~V~~---gp~~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~ 83 (185)
T d1pl8a1 7 NNLSLVVH---GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK 83 (185)
T ss_dssp CCEEEEEE---ETTEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred CCEEEEEe---CCCeEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecccee
Confidence 34566655 345699999999999999999999999999999999876432 355688999999999999999999
Q ss_pred CCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccc
Q 018246 87 KFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLC 166 (359)
Q Consensus 87 ~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~ 166 (359)
+|++||||++.+.. .|+.|.+|+.|.++.|.+..+... ...+|+|+||+++|+++++++|+++++++++.++
T Consensus 84 ~~~~GdrV~~~~~~-~cg~c~~c~~G~~~~c~~~~~~g~------~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~p- 155 (185)
T d1pl8a1 84 HLKPGDRVAIEPGA-PRENDEFCKMGRYNLSPSIFFCAT------PPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFP- 155 (185)
T ss_dssp SCCTTCEEEECSEE-CSSCCHHHHTTCGGGCTTCEETTB------TTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEE-
T ss_pred eecccccceeccee-ccccchhhccchhchhccceeeec------ccccccceEEEEEchHHEEECCCCCCHHHHHHHH-
Confidence 99999999877655 899999999999999998765422 2356899999999999999999999999987654
Q ss_pred hhhhhhhHhHhcCCCCCCCEEEEECCch
Q 018246 167 AGITVYSPMKYYGMTEPGKHLGVAGLGG 194 (359)
Q Consensus 167 ~~~ta~~~l~~~~~~~~g~~VlI~G~g~ 194 (359)
+.+|++++..... ++|++||| |+|+
T Consensus 156 -l~~a~~a~~~~~~-~~G~~VlI-g~GP 180 (185)
T d1pl8a1 156 -LEKALEAFETFKK-GLGLKIML-KCDP 180 (185)
T ss_dssp -GGGHHHHHHHHHT-TCCSEEEE-ECCT
T ss_pred -HHHHHHHHHHhCC-CCCCEEEE-EeCC
Confidence 3456777766655 89999998 5554
|
| >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.98 E-value=5.8e-35 Score=245.08 Aligned_cols=188 Identities=20% Similarity=0.268 Sum_probs=153.0
Q ss_pred cceeeeeecCCCCCccceeeecCCC-------CCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRET-------GADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGN 83 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~ 83 (359)
+|+++|+. ++++++++++.|++ +++||+|||.+++||++|+++++|.++ ..+|+++|||++|+|+++|+
T Consensus 2 ~kA~v~~~---~~~le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~ 77 (201)
T d1kola1 2 NRGVVYLG---SGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGR 77 (201)
T ss_dssp EEEEEEEE---TTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECT
T ss_pred cEEEEEeC---CCceEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeecccc
Confidence 46777664 34599999998865 469999999999999999999999876 56799999999999999999
Q ss_pred CCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccc---cccccCCCCCCCCccceEEEeeC--CceEECCCCCCc
Q 018246 84 NVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILT---YNSIDRDGTKTYGGYSDLIVVDQ--HYVLRFPDNMPL 158 (359)
Q Consensus 84 ~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~g~~a~~~~~~~--~~~~~lp~~l~~ 158 (359)
+|++|++||||++.+ ..+|++|.+|++|.++.|...... .......+...+|+|+||+++|. .++++||++...
T Consensus 78 ~V~~~~vGdrV~v~~-~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~ 156 (201)
T d1kola1 78 DVENLQIGDLVSVPF-NVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKA 156 (201)
T ss_dssp TCCSCCTTCEEECCS-EECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHH
T ss_pred ccccccccceeEEee-eeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCCh
Confidence 999999999997765 459999999999999988665322 11112223356799999999985 369999998777
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL 208 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~ 208 (359)
.+++++...+.++++++..... +.++ +|+|++|++++|+||.+||
T Consensus 157 ~~~~~~~~~~~~~~~a~~~~~~-~~g~----~g~G~vG~~~i~~ak~~GA 201 (201)
T d1kola1 157 MEKINIAEVVGVQVISLDDAPR-GYGE----FDAGVPKKFVIDPHKTFSA 201 (201)
T ss_dssp HHTCCHHHHHTEEEECGGGHHH-HHHH----HHHTCSCEEEECTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CCeE----EeeCHHHHHHHHHHHHcCC
Confidence 7778888888888888766553 4443 5899999999999999886
|
| >d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=8.4e-32 Score=221.39 Aligned_cols=169 Identities=30% Similarity=0.557 Sum_probs=142.7
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCC-CCCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEW-GVTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++..++ +.|++++++.|+|++|||||||++++||++|++.+++.. ....+|.++|||++|+|+++|++++.++
T Consensus 1 MkA~v~~~~g--~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~ 78 (171)
T d1rjwa1 1 MKAAVVEQFK--EPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLK 78 (171)
T ss_dssp CEEEEBSSTT--SCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred CeEEEEecCC--CCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCce
Confidence 7887777543 449999999999999999999999999999999887653 3567789999999999999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||++.+....|+.|..|..+.++.|.+.... |...+|+|+||+++|+++++++|++++++.| ++.+ ..
T Consensus 79 vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A-~l~~-~~ 149 (171)
T d1rjwa1 79 VGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA-------GYSVDGGYAEYCRAAADYVVKIPDNTIIEVQ-PLEK-IN 149 (171)
T ss_dssp TTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEB-------TTTBCCSSBSEEEEEGGGCEECCTTCCEEEE-EGGG-HH
T ss_pred eeeEEeeccccccccccccccCCCcccccccccc-------ceeccCccccceEecHHHEEECCCCCCHHHH-HHHH-HH
Confidence 9999988877778999999999999999887654 4456799999999999999999999998765 4443 45
Q ss_pred hhhhHhHhcCCCCCCCEEEEECC
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGL 192 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~ 192 (359)
++++.+.. +.+ +|++|||+|.
T Consensus 150 ~~~~~~~~-~~~-~G~tVlViG~ 170 (171)
T d1rjwa1 150 EVFDRMLK-GQI-NGRVVLTLED 170 (171)
T ss_dssp HHHHHHHT-TCC-SSEEEEECCC
T ss_pred HHHHHHHh-cCC-CCCEEEEeCC
Confidence 66666654 443 5999999884
|
| >d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1e-31 Score=221.19 Aligned_cols=164 Identities=47% Similarity=0.786 Sum_probs=135.9
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKE 90 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~v 90 (359)
||+++.. ...+.|++++++.|+|+++||||||.++|||++|++.+.|.++...+|+++|||++|+|+++|++|+++++
T Consensus 1 m~a~~~~--~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~v 78 (179)
T d1uufa1 1 IKAVGAY--SAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAP 78 (179)
T ss_dssp CEEEEBS--STTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred CeEEEEc--cCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCC
Confidence 5555533 45567999999999999999999999999999999999998877888999999999999999999999999
Q ss_pred CCEEEEeccccCCCCCccccCCCCCCCcccccccccccCC-CCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 91 GDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD-GTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 91 GdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
||||.+.+....|++|.+|+.|.++.|.++...+.+...+ +...+|+|+||+++|+++++++|+...... +..++.
T Consensus 79 GdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~~---~a~~l~ 155 (179)
T d1uufa1 79 GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMI---RADQIN 155 (179)
T ss_dssp TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEEE---CGGGHH
T ss_pred CCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcChh---HhchhH
Confidence 9999999988899999999999999999986555444322 334579999999999999999996643322 223455
Q ss_pred hhhhHhHhcC
Q 018246 170 TVYSPMKYYG 179 (359)
Q Consensus 170 ta~~~l~~~~ 179 (359)
++++++....
T Consensus 156 ~a~~a~~~a~ 165 (179)
T d1uufa1 156 EAYERMLRGD 165 (179)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 6677775543
|
| >d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.97 E-value=4.7e-31 Score=218.00 Aligned_cols=167 Identities=22% Similarity=0.411 Sum_probs=139.2
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC--------CCCCCCcccccccEEEEEeC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG--------VTNYPIVPGHEIVGTVTKVG 82 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~--------~~~~p~~~G~e~~G~V~~vG 82 (359)
||++++..++++ |++++++.|+|+++||||||.++|||++|+++++|.++ ...+|+++|||++|+|+++|
T Consensus 1 MKA~~~~~~G~p--l~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g 78 (177)
T d1jvba1 1 MRAVRLVEIGKP--LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG 78 (177)
T ss_dssp CEEEEECSTTSC--CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEEC
T ss_pred CeEEEEEeCCCC--CEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeec
Confidence 788888865544 89999999999999999999999999999999998643 34678999999999999999
Q ss_pred CCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCc-eEECCCCCCcccc
Q 018246 83 NNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHY-VLRFPDNMPLDAG 161 (359)
Q Consensus 83 ~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~-~~~lp~~l~~~~a 161 (359)
+.+++|++||||++.+.. .|+.|.+|+.+.++.|.+..+. |...+|+|+||+++|+.. ++++|+..+.+.+
T Consensus 79 ~~v~~~~~GdrV~~~~~~-~c~~c~~~~~g~~~~c~~~~~~-------g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a 150 (177)
T d1jvba1 79 DEVVGYSKGDLVAVNPWQ-GEGNCYYCRIGEEHLCDSPRWL-------GINFDGAYAEYVIVPHYKYMYKLRRVKPMITK 150 (177)
T ss_dssp TTCCSCCTTCEEEECCEE-CCSSSHHHHTTCGGGCSSCEEB-------TTTBCCSSBSEEEESCGGGEEECSSSCCCCEE
T ss_pred cCccccccCceEeeeecc-ccccccccccccccccCCccee-------eeccccccccEEEEEhHHeEEECCCCChHHHH
Confidence 999999999999877654 8999999999999999987554 334679999999998655 6666665555444
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEE
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGV 189 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI 189 (359)
+.+..++.++++++..... .|++|||
T Consensus 151 ~~~~~~~~~a~~~~~~~~~--~G~~VlI 176 (177)
T d1jvba1 151 TMKLEEANEAIDNLENFKA--IGRQVLI 176 (177)
T ss_dssp EEEGGGHHHHHHHHHTTCC--CSEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcc--cCCceEC
Confidence 4555688899999877775 4889987
|
| >d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.97 E-value=1.4e-30 Score=218.70 Aligned_cols=178 Identities=24% Similarity=0.333 Sum_probs=140.1
Q ss_pred CcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCC
Q 018246 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
.+.||..+..+....+++++++++.|+|+++||||||.++|||++|++.++|.++ ..+|.++|||++|+|+++|+++++
T Consensus 4 ~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~-~~~P~i~GHE~~G~Vv~vG~~v~~ 82 (198)
T d2jhfa1 4 GKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV-TPLPVIAGHEAAGIVESIGEGVTT 82 (198)
T ss_dssp TSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC-CCSSBCCCCSEEEEEEEECTTCCS
T ss_pred CCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcc-cccceecccceeEEEEecCccccC
Confidence 3445555544544556699999999999999999999999999999999999876 567999999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCC---------C-----CCCCCccceEEEeeCCceEECC
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRD---------G-----TKTYGGYSDLIVVDQHYVLRFP 153 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~---------g-----~~~~g~~a~~~~~~~~~~~~lp 153 (359)
+++||||++.+.. .|+.|.+|+.+..+.|.+....+...... | ....|+|+||+++|+.+++++|
T Consensus 83 ~~vGdrV~v~~~~-~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p 161 (198)
T d2jhfa1 83 VRPGDKVIPLFTP-QCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID 161 (198)
T ss_dssp CCTTCEEEECSSC-CCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECC
T ss_pred cCCCCEEEEeeee-cccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECC
Confidence 9999999777655 99999999999999999876543221111 1 1234899999999999999999
Q ss_pred CCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEE
Q 018246 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 154 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
+.++++.++...+++.+...+. ..+++|++|+|+
T Consensus 162 ~~~~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi 195 (198)
T d2jhfa1 162 AAFALDPLITHVLPFEKINEGF---DLLRSGESIRTI 195 (198)
T ss_dssp TTSCCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEE
T ss_pred CCCCHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEE
Confidence 9999877665554443322221 224788988875
|
| >d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.97 E-value=2.5e-31 Score=222.79 Aligned_cols=177 Identities=23% Similarity=0.295 Sum_probs=140.7
Q ss_pred CcccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCC
Q 018246 8 EHPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
..+||+.++.. ..++|++++++.|+|+++||||||.++|||++|+++++|.++ ..+|.++|||++|+|+++|+++++
T Consensus 6 ~~~~KAav~~~--~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~-~~~P~i~GHE~~G~Vv~~G~~v~~ 82 (198)
T d1p0fa1 6 DITCKAAVAWE--PHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVTC 82 (198)
T ss_dssp CEEEEEEEBSS--TTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred ceEEEEEEEcc--CCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc-cccccccceeeeeeeeecCccccc
Confidence 45777776553 334699999999999999999999999999999999999876 568999999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCccccccc-ccccCCC-------------CCCCCccceEEEeeCCceEECC
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTY-NSIDRDG-------------TKTYGGYSDLIVVDQHYVLRFP 153 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~g-------------~~~~g~~a~~~~~~~~~~~~lp 153 (359)
+++||||++.+. ..|++|.+|+.|.++.|....... .+...++ ....|+|+||+.+++..++++|
T Consensus 83 ~~~GdrV~~~~~-~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip 161 (198)
T d1p0fa1 83 VKPGDKVIPLFV-PQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKID 161 (198)
T ss_dssp CCTTCEEEECSS-CCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEEC
T ss_pred CcCCCEEEEEee-ccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECC
Confidence 999999977655 499999999999999998764321 1111111 1124899999999999999999
Q ss_pred CCCCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHH
Q 018246 154 DNMPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHV 198 (359)
Q Consensus 154 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~ 198 (359)
+.++.+.+++..+...+. .+++.|||.|+|++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~v----------~~~~~vlv~G~G~iGl~ 196 (198)
T d1p0fa1 162 PKINVNFLVSTKLTLDQI----------NKAFELLSSGQGVRSIM 196 (198)
T ss_dssp TTSCGGGGEEEEECGGGH----------HHHHHHTTTSSCSEEEE
T ss_pred CCCCHHHHHHhhcchhhc----------CCCCEEEEECCCcceEE
Confidence 999987766555443321 34456888888888754
|
| >d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.8e-30 Score=206.86 Aligned_cols=147 Identities=20% Similarity=0.315 Sum_probs=132.8
Q ss_pred ccceeeeeecCCCCCccce-eeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPF-HFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
.||++.+.-++.++.+++. +++.|+|++|||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus 2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~ 81 (150)
T d1yb5a1 2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA 81 (150)
T ss_dssp EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTT
T ss_pred ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeec
Confidence 5899998877788888875 68999999999999999999999999999987753 567889999999999999999999
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
|++||||++.+ ..+|+|+||+++|+++++++|+++++++|+++++.
T Consensus 82 ~~vGdrV~~~~----------------------------------~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~ 127 (150)
T d1yb5a1 82 FKKGDRVFTSS----------------------------------TISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLE 127 (150)
T ss_dssp CCTTCEEEESC----------------------------------CSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGG
T ss_pred cccCccccccc----------------------------------cccccccccccccccccccccCCCCHHHHHHhhhh
Confidence 99999997653 24599999999999999999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEE
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~ 190 (359)
.+|+|+++...+....|+++||+
T Consensus 128 ~~ta~~~~~~~g~~~~G~~vliL 150 (150)
T d1yb5a1 128 KVAEAHENIIHGSGATGKMILLL 150 (150)
T ss_dssp GHHHHHHHHHHSSCCSSEEEEEC
T ss_pred hhhehhhheEEcCcccCCEEEEC
Confidence 99999999888888999999984
|
| >d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.7e-28 Score=195.95 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=123.0
Q ss_pred eeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCC
Q 018246 13 AIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGD 92 (359)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGd 92 (359)
.+.+.-++.|+.|++++.+.|+|+++||+|||+++++|++|+++++|.++...+|.++|||++|+|+++|+++++|++||
T Consensus 3 ~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGd 82 (147)
T d1qora1 3 RIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGD 82 (147)
T ss_dssp EEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTTC
T ss_pred EEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeecccccccc
Confidence 35566667777899999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred EEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccc--cccchhhh
Q 018246 93 KVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGA--PLLCAGIT 170 (359)
Q Consensus 93 rV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa--~l~~~~~t 170 (359)
||+... ...|+|+||++++.+.++++|+++++++++ ++++...+
T Consensus 83 rV~~~~----------------------------------~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~ 128 (147)
T d1qora1 83 RVVYAQ----------------------------------SALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQ 128 (147)
T ss_dssp EEEESC----------------------------------CSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHH
T ss_pred eeeeec----------------------------------cccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHH
Confidence 996322 245899999999999999999999887654 55666777
Q ss_pred hhhHhHhcCCCCCCCEEEE
Q 018246 171 VYSPMKYYGMTEPGKHLGV 189 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI 189 (359)
+++++.+. .+++|++|||
T Consensus 129 ~~~~l~~~-~~~~G~~VLI 146 (147)
T d1qora1 129 RAHEILES-RATQGSSLLI 146 (147)
T ss_dssp HHHHHHHT-TCCCBCCEEE
T ss_pred HHHHHHHh-CCCCCCEEEe
Confidence 78887765 4599999997
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.1e-27 Score=195.64 Aligned_cols=162 Identities=33% Similarity=0.560 Sum_probs=147.3
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
+|+++||+++|++.|||+++++.. +++|++|+|+|+|++|++++|+||..|++|++++++++|++.+ +++|+++++|+
T Consensus 1 v~f~~aA~l~ca~~Ta~~al~~~~-~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a-~~~Ga~~~i~~ 78 (166)
T d1llua2 1 VEFAEIAPILCAGVTVYKGLKQTN-ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA-RKLGASLTVNA 78 (166)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh-hccCccccccc
Confidence 578999999999999999998765 4999999999999999999999999999999999999999888 89999999998
Q ss_pred CCHHH---HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHH
Q 018246 236 SDPAK---VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312 (359)
Q Consensus 236 ~~~~~---~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~ 312 (359)
++.+. +.....+.+.+++++++...++.++++++++|+++.+|...+..+++..+++.|++++.|+..+++++++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~~~d~~e~ 158 (166)
T d1llua2 79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEA 158 (166)
T ss_dssp TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecCHHHHHHH
Confidence 77544 334446788888888888889999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHhC
Q 018246 313 LDFCAKH 319 (359)
Q Consensus 313 ~~~l~~g 319 (359)
++++++|
T Consensus 159 l~l~~~G 165 (166)
T d1llua2 159 LDFAGEG 165 (166)
T ss_dssp HHHHHTT
T ss_pred HHHHHCc
Confidence 9999987
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.7e-28 Score=197.62 Aligned_cols=164 Identities=32% Similarity=0.564 Sum_probs=146.3
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSS 236 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~ 236 (359)
+.+.||++.|++.|+|+++++.. +++|++|+|+|+|++|++++|+|+.+|++|++++++++|++.+ +++|+++++++.
T Consensus 2 p~e~AApl~cag~Ta~~al~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a-~~lGa~~~i~~~ 79 (168)
T d1piwa2 2 PSHLAAPLLCGGLTVYSPLVRNG-CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA-MKMGADHYIATL 79 (168)
T ss_dssp CHHHHGGGGTHHHHHHHHHHHTT-CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEEGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC-cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHh-hccCCcEEeecc
Confidence 34678899999999999998765 5999999999999999999999999999999999999999998 899999999876
Q ss_pred CH-HHHHHhcCCccEEEECCCChh--hHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHHH
Q 018246 237 DP-AKVKAAMGTMDYIIDTVSAVH--SLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEML 313 (359)
Q Consensus 237 ~~-~~~~~~~~~~d~vid~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~ 313 (359)
+. +..+...+++|+++||+++.. .++.++++++++|+++.+|......+++...++.|++++.|+..++++++++++
T Consensus 80 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l 159 (168)
T d1piwa2 80 EEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLL 159 (168)
T ss_dssp GTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHH
T ss_pred chHHHHHhhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHH
Confidence 54 445555679999999988643 467899999999999999988877788888899999999999999999999999
Q ss_pred HHHHhCCCc
Q 018246 314 DFCAKHNIA 322 (359)
Q Consensus 314 ~~l~~g~i~ 322 (359)
+++++|+|+
T Consensus 160 ~li~~gkIk 168 (168)
T d1piwa2 160 KLVSEKDIK 168 (168)
T ss_dssp HHHHHTTCC
T ss_pred HHHHhCCCC
Confidence 999999985
|
| >d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=5.1e-28 Score=194.21 Aligned_cols=149 Identities=19% Similarity=0.286 Sum_probs=127.8
Q ss_pred ccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCC
Q 018246 10 PQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKF 88 (359)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~ 88 (359)
+||++++.-++++..+++++++.|+|++|||||||+++|||++|++.+.|.++ ....|.++|+|++|+|++ +.++.+
T Consensus 3 ~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~~ 80 (152)
T d1xa0a1 3 AFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPRF 80 (152)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSSC
T ss_pred ceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCcc
Confidence 79999988776666678899999999999999999999999999999988765 456789999999999999 566789
Q ss_pred CCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchh
Q 018246 89 KEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAG 168 (359)
Q Consensus 89 ~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~ 168 (359)
++||+|+..... .+...+|+|+||+++|+++++++|++++ ++|++++++.
T Consensus 81 ~~g~~v~~~~~~-----------------------------~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~ 130 (152)
T d1xa0a1 81 REGDEVIATGYE-----------------------------IGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAE 130 (152)
T ss_dssp CTTCEEEEESTT-----------------------------BTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGG
T ss_pred ccCCEEEEecCc-----------------------------cccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHH
Confidence 999999744211 1234569999999999999999999998 4688899999
Q ss_pred hhhhhHhHhcCCCCCCCEEEEEC
Q 018246 169 ITVYSPMKYYGMTEPGKHLGVAG 191 (359)
Q Consensus 169 ~ta~~~l~~~~~~~~g~~VlI~G 191 (359)
+|||.++...+.++ |++|||+|
T Consensus 131 ~ta~~~~~~~~~~~-G~tVL~l~ 152 (152)
T d1xa0a1 131 LPQALKRILRGELR-GRTVVRLA 152 (152)
T ss_dssp HHHHHHHHHHTCCC-SEEEEECC
T ss_pred HHHHHHHHHhcCCC-CCEEEEcC
Confidence 99999998888854 99999975
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=9.2e-27 Score=190.59 Aligned_cols=165 Identities=33% Similarity=0.551 Sum_probs=151.3
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
|++++||+++|+++|||++++.... ++|++|||+|+|++|++++++|+..|++|++++++++|++.+ +++|+++++++
T Consensus 1 ls~eeAA~l~~~~~Ta~~al~~~~~-~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~-k~~Ga~~~~~~ 78 (168)
T d1rjwa2 1 LSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNP 78 (168)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHHTC-CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh-hhcCcceeccc
Confidence 5899999999999999999988775 999999999999999999999999999999999999999988 89999999998
Q ss_pred CCH---HHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHHH
Q 018246 236 SDP---AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQEM 312 (359)
Q Consensus 236 ~~~---~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~ 312 (359)
++. ..+...+.+.+.+++++++..+++.++++++++|+++.+|...+..+++...++.|++++.|+..+++++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~ 158 (168)
T d1rjwa2 79 LKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEA 158 (168)
T ss_dssp TTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred ccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHHHHHHH
Confidence 765 34555667777777888888889999999999999999999888889999999999999999999999999999
Q ss_pred HHHHHhCCCc
Q 018246 313 LDFCAKHNIA 322 (359)
Q Consensus 313 ~~~l~~g~i~ 322 (359)
++++++|+++
T Consensus 159 l~l~~~Gkik 168 (168)
T d1rjwa2 159 LQFAAEGKVK 168 (168)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHhCCCC
Confidence 9999999985
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=6.5e-27 Score=191.32 Aligned_cols=164 Identities=45% Similarity=0.775 Sum_probs=144.5
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
.+++.+|++.|+..|+|++++.. .+++|++|+|+|+|++|++++|+|+.+|++++++++++++++.+ +++|+++++++
T Consensus 4 ~~~a~~Apl~Cag~Tay~al~~~-~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~lGad~~i~~ 81 (168)
T d1uufa2 4 EQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALGADEVVNS 81 (168)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEET
T ss_pred ccHHHHHHHHhHHHHHHHHHHHh-CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH-hccCCcEEEEC
Confidence 45677889999999999999764 56999999999999999999999999999999999999998887 89999999999
Q ss_pred CCHHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCHHHHHHHHH
Q 018246 236 SDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGMKETQEMLD 314 (359)
Q Consensus 236 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~ 314 (359)
++.+......+++|++||++|++.+++.++++++++|+++.+|...+ ...++...++.|++++.|+..++..+++++++
T Consensus 82 ~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l~ 161 (168)
T d1uufa2 82 RNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLD 161 (168)
T ss_dssp TCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHH
T ss_pred chhhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHHH
Confidence 98877666667999999999998889999999999999999998665 44678888899999999999999999999999
Q ss_pred HHHhCCC
Q 018246 315 FCAKHNI 321 (359)
Q Consensus 315 ~l~~g~i 321 (359)
++++++|
T Consensus 162 l~a~~~I 168 (168)
T d1uufa2 162 FCAEHGI 168 (168)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9998775
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.94 E-value=2.9e-26 Score=188.44 Aligned_cols=164 Identities=18% Similarity=0.253 Sum_probs=144.2
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
++++.|++++|+..|||+++.+...+++|++|+|+|+|++|++++|+|+.+|+ +|++++++++|++.+ +++|+++++|
T Consensus 1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a-~~~Ga~~~i~ 79 (174)
T d1f8fa2 1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQLGATHVIN 79 (174)
T ss_dssp SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHHTCSEEEE
T ss_pred CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHH-HHcCCeEEEe
Confidence 35788999999999999999988888999999999999999999999999999 667788899999888 8999999999
Q ss_pred CCCHH---HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCC--CCeeeCHHHHHhcCcEEEEeecCC---
Q 018246 235 SSDPA---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE--KPLEVPIFALVGARRLVGGSNVGG--- 305 (359)
Q Consensus 235 ~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~k~~~i~g~~~~~--- 305 (359)
+++.+ .++++++ ++|+||||+|++.+++.+++.++++|+++.+|... ...+++..+++.|++++.|+..++
T Consensus 80 ~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~ 159 (174)
T d1f8fa2 80 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSP 159 (174)
T ss_dssp TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCH
T ss_pred CCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCCh
Confidence 87754 3445554 89999999999888899999999999999999754 356889999999999999987654
Q ss_pred HHHHHHHHHHHHhCC
Q 018246 306 MKETQEMLDFCAKHN 320 (359)
Q Consensus 306 ~~~~~~~~~~l~~g~ 320 (359)
.++++++++++++|+
T Consensus 160 ~~~~~~~~~l~~~Gk 174 (174)
T d1f8fa2 160 KKFIPELVRLYQQGK 174 (174)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 467999999999986
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.94 E-value=6.9e-27 Score=191.67 Aligned_cols=163 Identities=26% Similarity=0.343 Sum_probs=147.6
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEe
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFL 233 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~ 233 (359)
||+.+||+++|++.|||+++++.. +++|++|+|+|+ |++|+++++++++.|. +|++++++++|++.+ +++|+++++
T Consensus 1 l~~~eAA~l~c~~~Ta~~al~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~-~~~Ga~~~i 78 (170)
T d1jvba2 1 LNAVEAAPLTCSGITTYRAVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVI 78 (170)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH-HHcCCceee
Confidence 578999999999999999997765 599999999995 9999999999999996 999999999999888 899999999
Q ss_pred cCCCHHH---HHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHH
Q 018246 234 VSSDPAK---VKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKE 308 (359)
Q Consensus 234 ~~~~~~~---~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~ 308 (359)
++++.+. +.+.+ +++|+++||+|++.+++.++++++++|+++.+|...+..+++...++.|++++.|+..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d 158 (170)
T d1jvba2 79 NASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSD 158 (170)
T ss_dssp ETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHH
T ss_pred ccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHH
Confidence 8877543 33343 379999999999988899999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 018246 309 TQEMLDFCAKHN 320 (359)
Q Consensus 309 ~~~~~~~l~~g~ 320 (359)
++++++++++||
T Consensus 159 ~~~~l~lv~~GK 170 (170)
T d1jvba2 159 FLGIMRLAEAGK 170 (170)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHcCC
Confidence 999999999986
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-26 Score=190.22 Aligned_cols=161 Identities=22% Similarity=0.310 Sum_probs=141.4
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
||+++||+++++++|||+++.+...+++|++|||+|+ |++|++++|+|+++|++|+++++++++.+.+ +++|+++++|
T Consensus 1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~-~~~Ga~~vi~ 79 (174)
T d1yb5a2 1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHEVFN 79 (174)
T ss_dssp SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEE
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccc-cccCcccccc
Confidence 5899999999999999999988888899999999996 9999999999999999999999999888887 8999999999
Q ss_pred CCCHHH---HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecC--CHH
Q 018246 235 SSDPAK---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVG--GMK 307 (359)
Q Consensus 235 ~~~~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~--~~~ 307 (359)
+++.+. +.+.++ ++|+++|++|+.. ++.++++++++|+++.+|.. +..+++...++.|++++.|+.++ +.+
T Consensus 80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~k~~~i~g~~~~~~~~~ 157 (174)
T d1yb5a2 80 HREVNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGVTLFSSTKE 157 (174)
T ss_dssp TTSTTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTCEEEECCGGGCCHH
T ss_pred cccccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCCCEEEEEecC-CCCCCCHHHHHHCCCEEEEEEecCCCHH
Confidence 987644 334443 7999999999765 99999999999999999875 46788889999999999998754 457
Q ss_pred HHHHHHHHHHhC
Q 018246 308 ETQEMLDFCAKH 319 (359)
Q Consensus 308 ~~~~~~~~l~~g 319 (359)
++++++++++++
T Consensus 158 ~~~~~~~~l~~g 169 (174)
T d1yb5a2 158 EFQQYAAALQAG 169 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888887765
|
| >d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=7.1e-27 Score=181.72 Aligned_cols=130 Identities=19% Similarity=0.296 Sum_probs=115.0
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC-CCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV-TNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++.+.-+++ .+++++++.|.|+++||+||+++++||++|++.++|.++. ..+|+++|||++|+|
T Consensus 1 MkA~~~~~~G~--~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V----------- 67 (131)
T d1iz0a1 1 MKAWVLKRLGG--PLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV----------- 67 (131)
T ss_dssp CEEEEECSTTS--CEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------
T ss_pred CcEEEEccCCC--CCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------
Confidence 78887775543 4899999999999999999999999999999999998763 568999999999999
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||||+... .+|+|+||+++++++++++|+++++++||++++.+.
T Consensus 68 vGd~V~~~~-----------------------------------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ 112 (131)
T d1iz0a1 68 EGRRYAALV-----------------------------------PQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAE 112 (131)
T ss_dssp TTEEEEEEC-----------------------------------SSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHH
T ss_pred ccceEEEEe-----------------------------------ccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHH
Confidence 399997543 459999999999999999999999999999999999
Q ss_pred hhhhHhHhcCCCCCCCEEEEE
Q 018246 170 TVYSPMKYYGMTEPGKHLGVA 190 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~ 190 (359)
|||+++.+.+ +.|++||++
T Consensus 113 Ta~~al~~~g--~~g~tvl~l 131 (131)
T d1iz0a1 113 AAFRALLDRG--HTGKVVVRL 131 (131)
T ss_dssp HHHHHTTCTT--CCBEEEEEC
T ss_pred HHHHHHHhcc--cCCCEEEEC
Confidence 9999998877 469999874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=99.94 E-value=4e-26 Score=187.33 Aligned_cols=161 Identities=28% Similarity=0.388 Sum_probs=143.5
Q ss_pred ccccccccchhhhhhhHhHhcC-CCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 158 LDAGAPLLCAGITVYSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 158 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
+.++|+++|+++|||+++.+.. .++||++|||+|+|++|++++|+|+++|+ +|++++++++|++.+ +++|+++++++
T Consensus 6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~-~~~ga~~~i~~ 84 (172)
T d1h2ba2 6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA-ERLGADHVVDA 84 (172)
T ss_dssp HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH-HHTTCSEEEET
T ss_pred HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH-hhcccceeecC
Confidence 5678999999999999998875 46999999999999999999999999998 788899999999888 89999999998
Q ss_pred CCH--HHHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHHHHHH
Q 018246 236 SDP--AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMKETQE 311 (359)
Q Consensus 236 ~~~--~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~ 311 (359)
++. +.+.+.+. ++|+|||++|+..+++.++++++++|+++.+|.. ...+++...++.|++++.|+..+++.++++
T Consensus 85 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~-~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~~ 163 (172)
T d1h2ba2 85 RRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG-GELRFPTIRVISSEVSFEGSLVGNYVELHE 163 (172)
T ss_dssp TSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS-SCCCCCHHHHHHTTCEEEECCSCCHHHHHH
T ss_pred cccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc-ccccCCHHHHHhCCcEEEEEEecCHHHHHH
Confidence 764 23334443 7999999999988799999999999999999964 457889999999999999999999999999
Q ss_pred HHHHHHhCC
Q 018246 312 MLDFCAKHN 320 (359)
Q Consensus 312 ~~~~l~~g~ 320 (359)
+++++++||
T Consensus 164 ~l~l~~~GK 172 (172)
T d1h2ba2 164 LVTLALQGK 172 (172)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 999999986
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.93 E-value=4.1e-26 Score=186.48 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=137.7
Q ss_pred CCccccccccchhhhhhhHhH---hcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE
Q 018246 156 MPLDAGAPLLCAGITVYSPMK---YYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
+++++||+++++++|||++++ ..+..++|++|||+|+ |++|.+++|+|+..|++|+++++++++.+.+ +++|+++
T Consensus 1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~-~~lGa~~ 79 (176)
T d1xa0a2 1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKE 79 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH-Hhcccce
Confidence 589999999999999997654 5677789999999985 9999999999999999999999999999888 8999999
Q ss_pred EecCCCHH--HHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEee--cCC
Q 018246 232 FLVSSDPA--KVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSN--VGG 305 (359)
Q Consensus 232 v~~~~~~~--~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~--~~~ 305 (359)
++|+++.. .+.... +++|+|||++|+.. +..++++|+++|+++.+|...+ ..++++..++.|++++.|.. ...
T Consensus 80 vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~~ 158 (176)
T d1xa0a2 80 VLAREDVMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCP 158 (176)
T ss_dssp EEECC---------CCSCCEEEEEECSTTTT-HHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCC
T ss_pred eeecchhHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcCC
Confidence 99987642 122222 38999999999987 9999999999999999998765 66899999999999999954 444
Q ss_pred HHHHHHHHHHHHhCCCcc
Q 018246 306 MKETQEMLDFCAKHNIAA 323 (359)
Q Consensus 306 ~~~~~~~~~~l~~g~i~~ 323 (359)
.+....+.+.+ .++++|
T Consensus 159 ~~~~~~~~~~l-ag~lkP 175 (176)
T d1xa0a2 159 MDLRLRIWERL-AGDLKP 175 (176)
T ss_dssp HHHHHHHHHHH-HTTTCC
T ss_pred HHHHHHHHHHH-hcccCC
Confidence 57677777776 477776
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.1e-25 Score=186.36 Aligned_cols=162 Identities=24% Similarity=0.380 Sum_probs=141.2
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
+++.+|++.|++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++++++|++.+ +++|+++++|+
T Consensus 2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~ 80 (182)
T d1vj0a2 2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNR 80 (182)
T ss_dssp CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTTCSEEEET
T ss_pred cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccc-ccccceEEEec
Confidence 3456789999999999999999888999999999999999999999999999 899999999999888 89999999988
Q ss_pred CCHH---H---HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHH-HHhcCcEEEEeecC
Q 018246 236 SDPA---K---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFA-LVGARRLVGGSNVG 304 (359)
Q Consensus 236 ~~~~---~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~-~~~k~~~i~g~~~~ 304 (359)
++.+ . +.+.+. ++|+||||+|++.+++.++++++++|+++.+|.... ..+++... ++.|++++.|+..+
T Consensus 81 ~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~ 160 (182)
T d1vj0a2 81 RETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVS 160 (182)
T ss_dssp TTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCC
T ss_pred cccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeC
Confidence 7642 2 333443 799999999998879999999999999999987543 55666544 67899999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 018246 305 GMKETQEMLDFCAKH 319 (359)
Q Consensus 305 ~~~~~~~~~~~l~~g 319 (359)
+..++++++++++++
T Consensus 161 ~~~~~~~~~~~i~~~ 175 (182)
T d1vj0a2 161 DTSHFVKTVSITSRN 175 (182)
T ss_dssp CHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC
Confidence 999999999998876
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=99.93 E-value=2.8e-25 Score=181.88 Aligned_cols=162 Identities=21% Similarity=0.312 Sum_probs=138.9
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++||.+.|++.|+|+++.+.+.+++|++|+|+|+|++|++++|+|+.+|+ +|++++.+++|++.+ +++|+++++++
T Consensus 2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~~Ga~~~i~~ 80 (174)
T d1e3ia2 2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KALGATDCLNP 80 (174)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSEEECG
T ss_pred CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HHhCCCcccCC
Confidence 5688999999999999999888888999999999999999999999999999 799999999999888 99999999986
Q ss_pred CCH----HHHH-Hhc-CCccEEEECCCChhhHHHHHhccccC-CEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC---
Q 018246 236 SDP----AKVK-AAM-GTMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG--- 305 (359)
Q Consensus 236 ~~~----~~~~-~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~--- 305 (359)
+.. ..+. ... +++|+||||+|++.+++.++++++++ |+++.+|...+..+++...++. ++++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~~-~k~i~Gs~~Gs~~~ 159 (174)
T d1e3ia2 81 RELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSINGTFFGGWKS 159 (174)
T ss_dssp GGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHT-TCEEEECSGGGCCH
T ss_pred ccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHhc-cCEEEEEEeeCCCh
Confidence 432 2222 222 49999999999999899999999996 9999999988888888887754 56888887654
Q ss_pred HHHHHHHHHHHHhCC
Q 018246 306 MKETQEMLDFCAKHN 320 (359)
Q Consensus 306 ~~~~~~~~~~l~~g~ 320 (359)
.+++.++++++++||
T Consensus 160 ~~d~p~li~l~~~GK 174 (174)
T d1e3ia2 160 VDSVPNLVSDYKNKK 174 (174)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcC
Confidence 467888889888875
|
| >d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=8.3e-26 Score=179.25 Aligned_cols=134 Identities=16% Similarity=0.257 Sum_probs=113.8
Q ss_pred cceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCCCC
Q 018246 11 QKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSKFK 89 (359)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~ 89 (359)
||++++.-++++..+++.+++.|+|++|||+|||.++|||++|++...|.++ ...+|.++|+|++|+|+++|. ..++
T Consensus 1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~ 78 (146)
T d1o89a1 1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH 78 (146)
T ss_dssp CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence 7899888777777788999999999999999999999999999999999876 356789999999999999766 4789
Q ss_pred CCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccchhh
Q 018246 90 EGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGI 169 (359)
Q Consensus 90 vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~~~ 169 (359)
+||+|.+.... .|...+|+|+||+++|+++++++|+++|+++||++++++.
T Consensus 79 ~g~~v~~~~~~-----------------------------~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~ 129 (146)
T d1o89a1 79 AGQEVLLTGWG-----------------------------VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNF 129 (146)
T ss_dssp TTCEEEEECTT-----------------------------BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHH
T ss_pred ceeeEEeeccc-----------------------------ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHH
Confidence 99999765321 1345679999999999999999999999999999999988
Q ss_pred hhhhHh
Q 018246 170 TVYSPM 175 (359)
Q Consensus 170 ta~~~l 175 (359)
||+..+
T Consensus 130 tA~~~~ 135 (146)
T d1o89a1 130 AEAIIN 135 (146)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 886544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.7e-25 Score=181.32 Aligned_cols=163 Identities=21% Similarity=0.251 Sum_probs=141.4
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+++++||.+ .++.+||+++++... ++|++|+|+|+|++|++++|+|+..|+ +|++++++++|++.+ +++|++++++
T Consensus 1 vS~e~Aal~-epla~a~~a~~~~~~-~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~Ga~~~~~ 77 (171)
T d1pl8a2 1 VTFEEGALI-EPLSVGIHACRRGGV-TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQ 77 (171)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEE
T ss_pred CCHHHHHHH-HHHHHHHHHHHHhCC-CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHhCCccccc
Confidence 467887644 567789999988765 999999999999999999999999999 899999999999988 8999999988
Q ss_pred CCCHH---HHHHh---c-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCHH
Q 018246 235 SSDPA---KVKAA---M-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGMK 307 (359)
Q Consensus 235 ~~~~~---~~~~~---~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~~ 307 (359)
.++.+ ..+.+ . .++|+||||+|++.+++.++++++++|+++.+|......++++..++.|++++.|+..+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~-~~ 156 (171)
T d1pl8a2 78 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY-CN 156 (171)
T ss_dssp CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSC-SS
T ss_pred ccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCC-Hh
Confidence 76542 22222 1 38999999999998899999999999999999998888889999999999999998765 46
Q ss_pred HHHHHHHHHHhCCCc
Q 018246 308 ETQEMLDFCAKHNIA 322 (359)
Q Consensus 308 ~~~~~~~~l~~g~i~ 322 (359)
+|+++++++++|+++
T Consensus 157 ~~~~al~li~~gkid 171 (171)
T d1pl8a2 157 TWPVAISMLASKSVN 171 (171)
T ss_dssp CHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 799999999999874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=99.93 E-value=6.6e-25 Score=179.73 Aligned_cols=161 Identities=21% Similarity=0.266 Sum_probs=137.8
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
+|+|+||.+ .++.+||+++++... ++|++|+|+|+|++|++++|+|+..|++|++++++++|++.+ +++|++..++.
T Consensus 1 VS~e~Aal~-ePla~a~~a~~~~~~-~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a-~~~ga~~~~~~ 77 (170)
T d1e3ja2 1 VSLEEGALL-EPLSVGVHACRRAGV-QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVV 77 (170)
T ss_dssp SCHHHHHTH-HHHHHHHHHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEEC
T ss_pred CCHHHHHHH-HHHHHHHHHHHHhCC-CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHH-HHcCCcEEEec
Confidence 467887654 567789999988775 999999999999999999999999999999999999999988 89999877654
Q ss_pred CCH-----HHHHHh---c-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHHHHHhcCcEEEEeecCCH
Q 018246 236 SDP-----AKVKAA---M-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIFALVGARRLVGGSNVGGM 306 (359)
Q Consensus 236 ~~~-----~~~~~~---~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~~ 306 (359)
+.. +....+ . .++|+||||+|++.+++.++++++++|+++.+|...+..++++..++.|++++.|+..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~- 156 (170)
T d1e3ja2 78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYC- 156 (170)
T ss_dssp CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCS-
T ss_pred cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCH-
Confidence 331 222222 2 389999999999988999999999999999999888778899999999999999987654
Q ss_pred HHHHHHHHHHHhCC
Q 018246 307 KETQEMLDFCAKHN 320 (359)
Q Consensus 307 ~~~~~~~~~l~~g~ 320 (359)
++|+++++++++||
T Consensus 157 ~~~~~ai~li~~Gk 170 (170)
T d1e3ja2 157 NDYPIALEMVASGR 170 (170)
T ss_dssp SCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 57999999999986
|
| >d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=3.1e-27 Score=191.68 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=129.4
Q ss_pred cccceeeeeecCCCCCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCC-CCCCCCcccccccEEEEEeCCCCCC
Q 018246 9 HPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWG-VTNYPIVPGHEIVGTVTKVGNNVSK 87 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~-~~~~p~~~G~e~~G~V~~vG~~v~~ 87 (359)
.+||++.+.-.+....+++++++.|++++|||||||+++|||++|++.+.|.++ ....|.++|+|++|+|++ +.++.
T Consensus 2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~ 79 (162)
T d1tt7a1 2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR 79 (162)
T ss_dssp CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence 378999988877888899999999999999999999999999999999998876 346678999999999998 56678
Q ss_pred CCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCccccccccch
Q 018246 88 FKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCA 167 (359)
Q Consensus 88 ~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~~~aa~l~~~ 167 (359)
+++||+|+..... .|...+|+|+||+++|++.++++|+++++++||++++.
T Consensus 80 ~~~g~~v~~~~~~-----------------------------~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~ 130 (162)
T d1tt7a1 80 FAEGDEVIATSYE-----------------------------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLL 130 (162)
T ss_dssp CCTTCEEEEESTT-----------------------------BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCST
T ss_pred cccceeeEeeecc-----------------------------ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHH
Confidence 9999999754321 13456799999999999999999999999999999999
Q ss_pred hhhhhhHhHhcCCCCCCCEEEEECC
Q 018246 168 GITVYSPMKYYGMTEPGKHLGVAGL 192 (359)
Q Consensus 168 ~~ta~~~l~~~~~~~~g~~VlI~G~ 192 (359)
++|||.++..... ..+++|||.|+
T Consensus 131 ~~ta~~~~~~~~~-~~~~~Vli~ga 154 (162)
T d1tt7a1 131 TIVDREVSLEETP-GALKDILQNRI 154 (162)
T ss_dssp TSEEEEECSTTHH-HHHHHTTTTCC
T ss_pred HHHHHHHHHhcCC-CCCCEEEEECC
Confidence 9999988755432 55577777765
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=99.92 E-value=2.1e-24 Score=176.86 Aligned_cols=161 Identities=26% Similarity=0.329 Sum_probs=134.7
Q ss_pred ccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCC
Q 018246 158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSS 236 (359)
Q Consensus 158 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~ 236 (359)
+.+||++.|++.|+|+++.+.+.+++|++|+|+|+|++|++++|+|+++|+ +|++++++++|++.+ +++|+++++|++
T Consensus 2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a-~~lGa~~~i~~~ 80 (174)
T d1p0fa2 2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPK 80 (174)
T ss_dssp CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHTTCSEEECGG
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH-HHcCCcEEEcCC
Confidence 567999999999999999888888999999999999999999999999998 899999999999999 899999999875
Q ss_pred CHH----HHHH-hc-CCccEEEECCCChhhHHHHHhcccc-CCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC--
Q 018246 237 DPA----KVKA-AM-GTMDYIIDTVSAVHSLAPLLGLLKV-NGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG-- 305 (359)
Q Consensus 237 ~~~----~~~~-~~-~~~d~vid~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~-- 305 (359)
+.+ .+.. .+ +++|++||++|+..++..++..+.+ +|+++.+|.... .++++...+ .+++++.|+.+++
T Consensus 81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~-~~~~~i~Gs~~G~~~ 159 (174)
T d1p0fa2 81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLL-LTGRSLKGSVFGGFK 159 (174)
T ss_dssp GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHH-HTTCEEEECSGGGCC
T ss_pred CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHH-hCCCEEEEEEeCCCC
Confidence 432 2222 23 3899999999999888888888876 599999997654 445554444 4678999988644
Q ss_pred HHHHHHHHHHHHhCC
Q 018246 306 MKETQEMLDFCAKHN 320 (359)
Q Consensus 306 ~~~~~~~~~~l~~g~ 320 (359)
.+|+.++++++.+||
T Consensus 160 ~~d~~~lidl~~~gK 174 (174)
T d1p0fa2 160 GEEVSRLVDDYMKKK 174 (174)
T ss_dssp GGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 468999999999886
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=99.92 E-value=5.6e-25 Score=180.25 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=136.7
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+++|+|+.+++++.|||++++.. .+++|++|+|+|+|++|++++|+|+.+|+ +|++++++++|++.+ +++|+++++|
T Consensus 1 ip~e~A~~l~~~~~ta~~a~~~a-~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~lGa~~~i~ 78 (174)
T d1jqba2 1 MPLENAVMITDMMTTGFHGAELA-DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFYGATDILN 78 (174)
T ss_dssp SCHHHHHTTTTHHHHHHHHHHHT-TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHHTCSEEEC
T ss_pred CCHHHHHHhhhHHHHHHHHHHHh-CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH-HhhCcccccc
Confidence 57899999999999999999775 55999999999999999999999999998 899999999998888 8999999998
Q ss_pred CCCH---HHHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCCC--eeeCH--HHHHhcCcEEEEeecCC
Q 018246 235 SSDP---AKVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKP--LEVPI--FALVGARRLVGGSNVGG 305 (359)
Q Consensus 235 ~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~--~~~~~k~~~i~g~~~~~ 305 (359)
+++. +.+.++++ ++|+||||+|++.+++.++++++++|+++.+|..... .+++. +..+.+++++.++....
T Consensus 79 ~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 158 (174)
T d1jqba2 79 YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG 158 (174)
T ss_dssp GGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCC
T ss_pred ccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCC
Confidence 8764 34555554 7999999999988899999999999999999976542 33332 23355789999987766
Q ss_pred H-HHHHHHHHHHHhCC
Q 018246 306 M-KETQEMLDFCAKHN 320 (359)
Q Consensus 306 ~-~~~~~~~~~l~~g~ 320 (359)
. ...+++++++++||
T Consensus 159 ~r~~~e~l~~li~~gk 174 (174)
T d1jqba2 159 GRLRAERLRDMVVYNR 174 (174)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred CcccHHHHHHHHHcCC
Confidence 5 44678888988875
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=3.4e-25 Score=181.28 Aligned_cols=147 Identities=25% Similarity=0.396 Sum_probs=123.4
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+++++||+++++++|||+++++ ..+++|++|||+|+ |++|++++|+|++.|++|+++++++++.+.+ +++|+++++|
T Consensus 1 ls~eeAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~-~~lGa~~~i~ 78 (171)
T d1iz0a2 1 LSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAAT 78 (171)
T ss_dssp CCHHHHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc-cccccceeee
Confidence 5789999999999999999987 45699999999986 9999999999999999999999999999888 8999999999
Q ss_pred CCCHHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCCH
Q 018246 235 SSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGGM 306 (359)
Q Consensus 235 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~~ 306 (359)
+.+.........++|+|||++|. . ++.++++++++|+++.+|...+ ..+++...++.|++++.|+....+
T Consensus 79 ~~~~~~~~~~~~g~D~v~d~~G~-~-~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~~ 149 (171)
T d1iz0a2 79 YAEVPERAKAWGGLDLVLEVRGK-E-VEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPL 149 (171)
T ss_dssp GGGHHHHHHHTTSEEEEEECSCT-T-HHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred hhhhhhhhhccccccccccccch-h-HHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcCh
Confidence 87643322333589999999883 4 8999999999999999998664 557888899999999999876543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.91 E-value=3.2e-24 Score=178.46 Aligned_cols=164 Identities=18% Similarity=0.292 Sum_probs=135.8
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEE-C-CchHHHHHHHHHHHCCCeEEEEeCChhhHH---HHHHHcCCc
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVA-G-LGGLGHVAVKIGKAFGLKVTVISTSPKKES---EAISKLGAD 230 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~-G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~---~~~~~~g~~ 230 (359)
+++++||+++++++|||+++.....+++|++|+|+ | +|++|++++|+||++|++|++++++++..+ ...+++|++
T Consensus 1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad 80 (189)
T d1gu7a2 1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT 80 (189)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence 57899999999999999999999888999999986 5 499999999999999999999987655433 223789999
Q ss_pred EEecCCCHH------HHHHhc----CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEE
Q 018246 231 AFLVSSDPA------KVKAAM----GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVG 299 (359)
Q Consensus 231 ~v~~~~~~~------~~~~~~----~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~ 299 (359)
+++++++.+ .+.+++ +++|++||++|++. +..++++|+++|+++.+|...+ ..+++...++.|++++.
T Consensus 81 ~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~ 159 (189)
T d1gu7a2 81 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSA 159 (189)
T ss_dssp EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEE
T ss_pred EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEE
Confidence 999875431 233332 37999999999877 8999999999999999997654 67899999999999999
Q ss_pred EeecCCH---------HHHHHHHHHHHhCC
Q 018246 300 GSNVGGM---------KETQEMLDFCAKHN 320 (359)
Q Consensus 300 g~~~~~~---------~~~~~~~~~l~~g~ 320 (359)
|+....+ +.++++++++++|+
T Consensus 160 G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk 189 (189)
T d1gu7a2 160 GFWVTELLKNNKELKTSTLNQIIAWYEEGK 189 (189)
T ss_dssp ECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence 9866432 44788888888875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=8.1e-25 Score=181.42 Aligned_cols=163 Identities=17% Similarity=0.245 Sum_probs=135.9
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
+|||+++++++|||+++.+...+++|++|||+|+ |++|++++|+|++.|++|+++++++++.+.+ +++|+++++++++
T Consensus 1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l-~~~Ga~~vi~~~~ 79 (183)
T d1pqwa_ 1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-SRLGVEYVGDSRS 79 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HTTCCSEEEETTC
T ss_pred CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccc-ccccccccccCCc
Confidence 5789999999999999999988899999999875 9999999999999999999999999998877 8999999999887
Q ss_pred HHH---HHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC-----
Q 018246 238 PAK---VKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG----- 305 (359)
Q Consensus 238 ~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~----- 305 (359)
.+. +.+.+. ++|++||++|++. ++.++++|+++|+++.+|.... ...... ..+.+++++.++....
T Consensus 80 ~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (183)
T d1pqwa_ 80 VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPGGRFIELGKKDVYADASLGL-AALAKSASFSVVDLDLNLKLQ 157 (183)
T ss_dssp STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEEEEEEECSCGGGTTTCEEEG-GGGTTTCEEEECCHHHHHHHC
T ss_pred cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCCCEEEEEccCCCCCCcccch-HHHhCCcEEEEEEccceeccC
Confidence 643 444443 7999999999866 9999999999999999986543 223333 3346888888876532
Q ss_pred ----HHHHHHHHHHHHhCCCccc
Q 018246 306 ----MKETQEMLDFCAKHNIAAD 324 (359)
Q Consensus 306 ----~~~~~~~~~~l~~g~i~~~ 324 (359)
.+.++++++++++|+++|.
T Consensus 158 ~~~~~~~~~~v~~~i~~G~i~p~ 180 (183)
T d1pqwa_ 158 PARYRQLLQHILQHVADGKLEVL 180 (183)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCcee
Confidence 2448888999999999863
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.91 E-value=1.2e-23 Score=173.06 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=132.7
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++||+++|++.|+|+++.+.+.++||++|||+|+|++|++++|+|+.+|+ +|++++++++|++.+ +++|+++++|+
T Consensus 2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-k~lGa~~~i~~ 80 (176)
T d2fzwa2 2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEFGATECINP 80 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHHTCSEEECG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHH-HHhCCcEEEeC
Confidence 4688999999999999999888888999999999999999999999999998 788888999998887 89999999987
Q ss_pred CCH-H----HHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC--
Q 018246 236 SDP-A----KVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG-- 305 (359)
Q Consensus 236 ~~~-~----~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~-- 305 (359)
.+. + .+.... +++|+|||++|+..+++.+...++++|+++.++.... ....+....+.+++++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2fzwa2 81 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK 160 (176)
T ss_dssp GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred CchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence 542 1 222333 3899999999998888999999999988887754332 23333333345788999988765
Q ss_pred -HHHHHHHHHHHHhCC
Q 018246 306 -MKETQEMLDFCAKHN 320 (359)
Q Consensus 306 -~~~~~~~~~~l~~g~ 320 (359)
.+++.++++++++||
T Consensus 161 ~~~d~~~li~l~~~GK 176 (176)
T d2fzwa2 161 SVESVPKLVSEYMSKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCC
Confidence 467888899988886
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.91 E-value=7.6e-24 Score=175.18 Aligned_cols=156 Identities=20% Similarity=0.199 Sum_probs=131.3
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH-
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA- 239 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~- 239 (359)
+++.++++|||++|.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++++++.+
T Consensus 8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~Ga~~vi~~~~~~~ 86 (182)
T d1v3va2 8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNS 86 (182)
T ss_dssp TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSC
T ss_pred HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH-HhhhhhhhcccccccH
Confidence 5788999999999999999999999999986 8999999999999999999999999998888 899999999987753
Q ss_pred --HHHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEecCCC-------CCeeeCHHHHHhcCcEEEEeecCCH--
Q 018246 240 --KVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE-------KPLEVPIFALVGARRLVGGSNVGGM-- 306 (359)
Q Consensus 240 --~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-------~~~~~~~~~~~~k~~~i~g~~~~~~-- 306 (359)
.+.+.+ .++|+|||++|++. ++.++++++++|+++.+|... ....++...++.|++++.|+....+
T Consensus 87 ~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~ 165 (182)
T d1v3va2 87 LEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQG 165 (182)
T ss_dssp HHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCH
T ss_pred HHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccCh
Confidence 333333 38999999999765 999999999999999998533 1345677888999999999876543
Q ss_pred ----HHHHHHHHHHHhC
Q 018246 307 ----KETQEMLDFCAKH 319 (359)
Q Consensus 307 ----~~~~~~~~~l~~g 319 (359)
+.++++++++++|
T Consensus 166 ~~~~~~~~~l~~~i~~G 182 (182)
T d1v3va2 166 DVREKALRDLMKWVLEG 182 (182)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 2367777877765
|
| >d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=99.90 E-value=1.8e-26 Score=190.14 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=128.3
Q ss_pred cccceeeeeecCCCC---CccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCC----------CCCCCccccccc
Q 018246 9 HPQKAIGWAARDNTG---TFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGV----------TNYPIVPGHEIV 75 (359)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~----------~~~p~~~G~e~~ 75 (359)
.++|++.+..+++|. .++..+++.|+|+++||||||++++||++|+++++|.++. ...|.++|+|++
T Consensus 2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~ 81 (175)
T d1gu7a1 2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL 81 (175)
T ss_dssp EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence 378999988766653 2445667778889999999999999999999999887531 245678999999
Q ss_pred EEEEEeCCCCCCCCCCCEEEEeccccCCCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCC
Q 018246 76 GTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDN 155 (359)
Q Consensus 76 G~V~~vG~~v~~~~vGdrV~v~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~ 155 (359)
|+|+++|..+..++.||||.... ...|+|+||+++|+++++++|++
T Consensus 82 g~V~~~~~~~~~~~~g~~v~~~~----------------------------------~~~g~~aey~~v~~~~~~~iP~~ 127 (175)
T d1gu7a1 82 FEVIKVGSNVSSLEAGDWVIPSH----------------------------------VNFGTWRTHALGNDDDFIKLPNP 127 (175)
T ss_dssp EEEEEECTTCCSCCTTCEEEESS----------------------------------SCCCCSBSEEEEEGGGEEEECCH
T ss_pred cccccccccccccccccceeccc----------------------------------cccccccceeeehhhhccCCCcc
Confidence 99999999999999999997543 24589999999999999999998
Q ss_pred CCccccccccchhhhhhhHhHh-cCCCCCCCEEEEEC-C-chHHHHHHH
Q 018246 156 MPLDAGAPLLCAGITVYSPMKY-YGMTEPGKHLGVAG-L-GGLGHVAVK 201 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~VlI~G-~-g~vG~~a~~ 201 (359)
++.+. ++.+..+|||+++.. ...+++|++|||.| + |++|++++|
T Consensus 128 ~~~~~--a~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ 174 (175)
T d1gu7a1 128 AQSKA--NGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174 (175)
T ss_dssp HHHHH--TTCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred chhhh--hccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence 76444 445678899998875 46679999999986 4 789988765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=99.90 E-value=6.5e-23 Score=168.52 Aligned_cols=163 Identities=25% Similarity=0.293 Sum_probs=135.7
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++||+++|++.|+|+++.+.+.+++|++|+|+|+|++|+++++.++..|+ +|++++++++|++.+ +++|+++++|+
T Consensus 2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a-~~~GAd~~in~ 80 (175)
T d1cdoa2 2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA-KVFGATDFVNP 80 (175)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCCEEECG
T ss_pred CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH-HHcCCcEEEcC
Confidence 4688999999999999999888888999999999999999999999999998 899999999999888 89999999997
Q ss_pred CCHH----HHHHhc--CCccEEEECCCChhhHHHHHhccccCC-EEEEecCCCCCeeeCHHHHHhcCcEEEEeecCC---
Q 018246 236 SDPA----KVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNG-KLVTVGLPEKPLEVPIFALVGARRLVGGSNVGG--- 305 (359)
Q Consensus 236 ~~~~----~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G-~~v~~g~~~~~~~~~~~~~~~k~~~i~g~~~~~--- 305 (359)
++.+ .+...+ +++|+++|++|+..++..+..+++++| .++..|........+....+.+++++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~ 160 (175)
T d1cdoa2 81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKG 160 (175)
T ss_dssp GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCCH
T ss_pred CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCcH
Confidence 5432 222332 389999999999887888888887775 445555555555566666677899999988765
Q ss_pred HHHHHHHHHHHHhCC
Q 018246 306 MKETQEMLDFCAKHN 320 (359)
Q Consensus 306 ~~~~~~~~~~l~~g~ 320 (359)
.+++.++++++++||
T Consensus 161 ~~d~~~~i~l~~~gK 175 (175)
T d1cdoa2 161 KDGVPKMVKAYLDKK 175 (175)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 477999999999886
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=99.90 E-value=1e-22 Score=167.40 Aligned_cols=163 Identities=20% Similarity=0.264 Sum_probs=132.3
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++||+++|++.|+|+++.+.+.+++|++|||+|+|++|++++++++..|+ +|++++++++|.+.+ +++|+++++++
T Consensus 2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~Ga~~~i~~ 80 (176)
T d2jhfa2 2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEVGATECVNP 80 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSEEECG
T ss_pred CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHhCCeeEEec
Confidence 4788999999999999999988888999999999999999999999999997 999999999999888 89999999886
Q ss_pred CCH----HHHHHhc--CCccEEEECCCChhhHHHHHhccccCCEEE-EecCCCCC-eeeCHHHHHhcCcEEEEeecCC--
Q 018246 236 SDP----AKVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLV-TVGLPEKP-LEVPIFALVGARRLVGGSNVGG-- 305 (359)
Q Consensus 236 ~~~----~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v-~~g~~~~~-~~~~~~~~~~k~~~i~g~~~~~-- 305 (359)
.+. ......+ +++|++||++|.+.+++.++..++++|..+ ..+..... ..+....++.+++++.|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~ 160 (176)
T d2jhfa2 81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK 160 (176)
T ss_dssp GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC
Confidence 442 2222222 389999999999988899999999975444 44443332 2333334566899999998765
Q ss_pred -HHHHHHHHHHHHhCC
Q 018246 306 -MKETQEMLDFCAKHN 320 (359)
Q Consensus 306 -~~~~~~~~~~l~~g~ 320 (359)
.+++.++++++.+||
T Consensus 161 ~~~~~~~li~~~~~GK 176 (176)
T d2jhfa2 161 SKDSVPKLVADFMAKK 176 (176)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCcC
Confidence 577899999998875
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=99.89 E-value=8.1e-23 Score=167.54 Aligned_cols=159 Identities=23% Similarity=0.343 Sum_probs=131.4
Q ss_pred CccccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecC
Q 018246 157 PLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVS 235 (359)
Q Consensus 157 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~ 235 (359)
++++|+.++|++.|+|+++.+...+++|++|+|.|+|++|++++|+|++.|+ +|++++.+++|++.+ +++|+++++|+
T Consensus 3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~GA~~~in~ 81 (176)
T d1d1ta2 3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAVGATECISP 81 (176)
T ss_dssp CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHHTCSEEECG
T ss_pred CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH-HhcCCcEEECc
Confidence 4789999999999999999888778999999999999999999999999997 999999999999988 99999999987
Q ss_pred CCHH----HHHHhc--CCccEEEECCCChhhHHHHHhccccC-CEEEEecCCCC--CeeeCHHHHHhcCcEEEEeecCC-
Q 018246 236 SDPA----KVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVN-GKLVTVGLPEK--PLEVPIFALVGARRLVGGSNVGG- 305 (359)
Q Consensus 236 ~~~~----~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~k~~~i~g~~~~~- 305 (359)
++.+ .+.+.+ .++|+++|++|...++..++..+.++ |+++.+|.... ...++...++ +++++.|+..++
T Consensus 82 ~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~~ 160 (176)
T d1d1ta2 82 KDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGGL 160 (176)
T ss_dssp GGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGC
T ss_pred cccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeCC
Confidence 6532 233333 38999999999998788888877655 99999998765 3455555544 678999988765
Q ss_pred --HHHHHHHHHHHH
Q 018246 306 --MKETQEMLDFCA 317 (359)
Q Consensus 306 --~~~~~~~~~~l~ 317 (359)
++++.++++++.
T Consensus 161 ~~~~dip~li~~~~ 174 (176)
T d1d1ta2 161 KSRDDVPKLVTEFL 174 (176)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHh
Confidence 466777766653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.7e-23 Score=171.48 Aligned_cols=162 Identities=21% Similarity=0.271 Sum_probs=129.4
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV 234 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~ 234 (359)
+|+++||+++++++|||++|.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++.+.+ +++|+++++|
T Consensus 1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~-~~lGa~~vi~ 79 (179)
T d1qora2 1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAGAWQVIN 79 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH-HhcCCeEEEE
Confidence 5899999999999999999999888899999999975 8899999999999999999999999999888 8999999999
Q ss_pred CCCHH---HHHHhcC--CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcC-cEEEEeec----
Q 018246 235 SSDPA---KVKAAMG--TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGAR-RLVGGSNV---- 303 (359)
Q Consensus 235 ~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~-~~i~g~~~---- 303 (359)
+++++ .+.++++ ++|+++|+++++. +..++.+++++|+++.++.... ...++...+..+. +.+.+..+
T Consensus 80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 158 (179)
T d1qora2 80 YREEDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYI 158 (179)
T ss_dssp TTTSCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHC
T ss_pred CCCCCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEeeec
Confidence 88764 4555554 7999999999876 9999999999999999987664 4445555544433 33332211
Q ss_pred CCHHH----HHHHHHHHHhC
Q 018246 304 GGMKE----TQEMLDFCAKH 319 (359)
Q Consensus 304 ~~~~~----~~~~~~~l~~g 319 (359)
...++ ++++++++++|
T Consensus 159 ~~~~~~~~~~~~l~~lv~~G 178 (179)
T d1qora2 159 TTREELTEASNELFSLIASG 178 (179)
T ss_dssp CSHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCc
Confidence 22222 45566777765
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.2e-23 Score=168.84 Aligned_cols=156 Identities=20% Similarity=0.245 Sum_probs=129.5
Q ss_pred CCccccccccchhhhhhhHh---HhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE
Q 018246 156 MPLDAGAPLLCAGITVYSPM---KYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l---~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
+|+.+|++++++++|||+++ ...+...++++|||+|+ |++|.+++|+||.+|++|+++++++++.+.+ +++|+++
T Consensus 1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~-~~lGad~ 79 (177)
T d1o89a2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGASR 79 (177)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTEEE
T ss_pred CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH-Hhhcccc
Confidence 57899999999999999765 44565456679999875 9999999999999999999999999998888 8999999
Q ss_pred EecCCCHHHHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeec--CCHH
Q 018246 232 FLVSSDPAKVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNV--GGMK 307 (359)
Q Consensus 232 v~~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~--~~~~ 307 (359)
++|+++.+..+.+.. .+|.++|+++++. +..++++++++|+++.+|...+ ..+++...++.|++++.|+.. ...+
T Consensus 80 vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~-~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~ 158 (177)
T d1o89a2 80 VLPRDEFAESRPLEKQVWAGAIDTVGDKV-LAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPE 158 (177)
T ss_dssp EEEGGGSSSCCSSCCCCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSSSCCHH
T ss_pred ccccccHHHHHHHHhhcCCeeEEEcchHH-HHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEecccCCHH
Confidence 999876544444443 6899999999877 9999999999999999998765 567888899999999999655 3344
Q ss_pred HHHHHH
Q 018246 308 ETQEML 313 (359)
Q Consensus 308 ~~~~~~ 313 (359)
+..++.
T Consensus 159 ~~~~~~ 164 (177)
T d1o89a2 159 RRAQAW 164 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=2.9e-22 Score=166.18 Aligned_cols=163 Identities=17% Similarity=0.182 Sum_probs=125.5
Q ss_pred CCccccccccchhhhhhhHhHhcCCCCCC--CEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcE
Q 018246 156 MPLDAGAPLLCAGITVYSPMKYYGMTEPG--KHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADA 231 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~ 231 (359)
+|+.+. +++++++|||+++.....+++| ++|||+|+ |++|++++|+||..|+ +|+++++++++...+.+++|+++
T Consensus 2 ~~~~~g-alg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~ 80 (187)
T d1vj1a2 2 LSYFLG-AIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA 80 (187)
T ss_dssp GGGGGT-TTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred ccHHHH-HhhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence 455565 4788899999999999888887 88999985 9999999999999999 56667888888877768899999
Q ss_pred EecCCCHH---HHHHhcC-CccEEEECCCChhhHHHHHhccccCCEEEEecCCCC---Ce----ee---CHHHHHhcCcE
Q 018246 232 FLVSSDPA---KVKAAMG-TMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK---PL----EV---PIFALVGARRL 297 (359)
Q Consensus 232 v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~----~~---~~~~~~~k~~~ 297 (359)
++|+++++ .+++.+. ++|+|||++|++. ++..+++++++|+++.+|..++ .. .. ....+..|+++
T Consensus 81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~ 159 (187)
T d1vj1a2 81 AVNYKTGNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNIT 159 (187)
T ss_dssp EEETTSSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCE
T ss_pred EeeccchhHHHHHHHHhccCceEEEecCCchh-HHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceE
Confidence 99998753 3444444 8999999999876 9999999999999999986432 11 11 12345678999
Q ss_pred EEEeecCCH-----HHHHHHHHHHHhCC
Q 018246 298 VGGSNVGGM-----KETQEMLDFCAKHN 320 (359)
Q Consensus 298 i~g~~~~~~-----~~~~~~~~~l~~g~ 320 (359)
+.|+....+ +.++++.+++.+|+
T Consensus 160 ~~g~~~~~~~~~~~e~~~~l~~~i~~Gk 187 (187)
T d1vj1a2 160 RERFTVLNYKDKFEPGILQLSQWFKEGK 187 (187)
T ss_dssp EEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred EEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence 998765432 33677888888875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2e-21 Score=161.71 Aligned_cols=160 Identities=21% Similarity=0.182 Sum_probs=132.6
Q ss_pred cccccccchhhhhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCC
Q 018246 159 DAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSD 237 (359)
Q Consensus 159 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~ 237 (359)
++.++|+..+.|||++++.. .+++|++|||+|+|++|++++++|+..|+ +|++++++++|++.+ +++|+++++++.+
T Consensus 2 ~d~~~l~d~~~ta~~a~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-~~~Ga~~~~~~~~ 79 (195)
T d1kola2 2 RDLTCLSDILPTGYHGAVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQGFEIADLSLD 79 (195)
T ss_dssp HHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCEEEETTSS
T ss_pred chHHhcccHHHHHHHHHHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh-hhccccEEEeCCC
Confidence 46778899999999999765 56999999999999999999999999999 899999999999888 9999999998876
Q ss_pred HH---HHHHhcC--CccEEEECCCCh---------------hhHHHHHhccccCCEEEEecCCCC-------------Ce
Q 018246 238 PA---KVKAAMG--TMDYIIDTVSAV---------------HSLAPLLGLLKVNGKLVTVGLPEK-------------PL 284 (359)
Q Consensus 238 ~~---~~~~~~~--~~d~vid~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~~~-------------~~ 284 (359)
.+ .+.+++. ++|++||++|.+ .+++.++++++++|+++.+|.... ..
T Consensus 80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~ 159 (195)
T d1kola2 80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL 159 (195)
T ss_dssp SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence 53 4555554 899999999843 469999999999999999996432 23
Q ss_pred eeCHHHHHhcCcEEEEeecCCHHHHHHHHHHHHhCC
Q 018246 285 EVPIFALVGARRLVGGSNVGGMKETQEMLDFCAKHN 320 (359)
Q Consensus 285 ~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~g~ 320 (359)
.+++..++.|++++.+........++++++++.++|
T Consensus 160 ~~~~~~~~~k~~~i~~g~~~v~~~~~~Ll~~I~~~k 195 (195)
T d1kola2 160 SIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDR 195 (195)
T ss_dssp CCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTS
T ss_pred eeeHHHHHhhcceeccCCCchHHHHHHHHHHHHcCC
Confidence 466667788999987655444555788999988765
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.4e-21 Score=158.12 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=122.1
Q ss_pred chhhhhh---hHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH--
Q 018246 166 CAGITVY---SPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA-- 239 (359)
Q Consensus 166 ~~~~ta~---~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~-- 239 (359)
++++||| +++.+.+..+++++|||+|+ |++|.+++|+||.+|++|+++++++++.+.+ +++|+++++++++..
T Consensus 3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~~ 81 (167)
T d1tt7a2 3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDG 81 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSS
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhch
Confidence 3456776 45666777678889999986 9999999999999999999999999999888 899999999875321
Q ss_pred HHHHhc-CCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeecCC--HHHHHHHHHH
Q 018246 240 KVKAAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNVGG--MKETQEMLDF 315 (359)
Q Consensus 240 ~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~~~--~~~~~~~~~~ 315 (359)
.+.... +++|+|+|++|++. +..++++|+++|+++.+|...+ ..+++...++.|++++.|..... .+...++.+.
T Consensus 82 ~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~ 160 (167)
T d1tt7a2 82 TLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWER 160 (167)
T ss_dssp CCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHH
T ss_pred hhhcccCCCceEEEecCcHHH-HHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHHH
Confidence 111111 38999999999987 9999999999999999998775 67899999999999999965432 3445555554
Q ss_pred HHhCCCcc
Q 018246 316 CAKHNIAA 323 (359)
Q Consensus 316 l~~g~i~~ 323 (359)
+. +.++|
T Consensus 161 l~-~~L~P 167 (167)
T d1tt7a2 161 MS-SDLKP 167 (167)
T ss_dssp TT-TTSCC
T ss_pred HH-hcCCC
Confidence 43 34443
|
| >d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: Alcohol dehydrogenase-like, N-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=99.61 E-value=2.6e-15 Score=117.62 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=91.5
Q ss_pred CCccceeeecCCCCCCeEEEEEeeeecchhhhhhhccCCCCCCCCCcccccccEEEEEeCCCCCCCCCCCEEEEeccccC
Q 018246 23 GTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVAS 102 (359)
Q Consensus 23 ~~~~~~~~~~~~~~~~eVlV~v~~~~i~~~D~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~v~~~~~~ 102 (359)
+.|++++.+.|+|++||||||+++.++++...... .......++..+++|+|++ |++++|++||+|..
T Consensus 20 ~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~----~~~~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g------ 87 (147)
T d1v3va1 20 SDFELKTVELPPLKNGEVLLEALFLSVDPYMRIAS----KRLKEGAVMMGQQVARVVE--SKNSAFPAGSIVLA------ 87 (147)
T ss_dssp GGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHG----GGSCTTSBCCCCEEEEEEE--ESCTTSCTTCEEEE------
T ss_pred cceEEEEEECCCCCCCEEEEEEEEEeEcccccccc----cccccCCccccceEEEEEE--eCCCcccCCCEEEE------
Confidence 34899999999999999999999999987544322 2223334556688999988 67789999999962
Q ss_pred CCCCccccCCCCCCCcccccccccccCCCCCCCCccceEEEeeCCceEECCCCCCc-----cccccccchhhhh-hhHhH
Q 018246 103 CQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPL-----DAGAPLLCAGITV-YSPMK 176 (359)
Q Consensus 103 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~a~~~~~~~~~~~~lp~~l~~-----~~aa~l~~~~~ta-~~~l~ 176 (359)
.++|+||.++++..+.++|+.++. ...+++....+|| |..+.
T Consensus 88 --------------------------------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~ 135 (147)
T d1v3va1 88 --------------------------------QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML 135 (147)
T ss_dssp --------------------------------CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH
T ss_pred --------------------------------ccCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhh
Confidence 278999999999999999876543 2345677777775 44554
Q ss_pred hcCCCCCCCEEEE
Q 018246 177 YYGMTEPGKHLGV 189 (359)
Q Consensus 177 ~~~~~~~g~~VlI 189 (359)
..+ +.|++||+
T Consensus 136 ~~~--k~Getvv~ 146 (147)
T d1v3va1 136 NGA--NLGKAVVT 146 (147)
T ss_dssp TTC--CSSEEEEE
T ss_pred CCC--CCCCEEEe
Confidence 444 67999987
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=6.2e-14 Score=96.17 Aligned_cols=73 Identities=23% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCccccccccchhhhhhhHhH---hcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC
Q 018246 156 MPLDAGAPLLCAGITVYSPMK---YYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA 229 (359)
Q Consensus 156 l~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~ 229 (359)
+|+++|++++++++|||.+++ +....+++++|||+|+ |++|.+++|+++.+|++|+++.+++++.+.+ +++|+
T Consensus 1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~-~~lGA 77 (77)
T d1o8ca2 1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGA 77 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTE
T ss_pred CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HHCCC
Confidence 578999999999999988764 4556689999999975 9999999999999999999999999999888 78874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.62 E-value=1.4e-07 Score=73.63 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=79.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
+..+|+|+|+|..|+.|++.|+.+|+.|.+.+.+.++++++...++........+.+.+.+.....|+||.++--+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a 110 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 110 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence 4468999999999999999999999999999999999999955555332233444556666667899999987422
Q ss_pred --hhHHHHHhccccCCEEEEecCCCC
Q 018246 259 --HSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 259 --~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
..-+..++.|++++.+|++...++
T Consensus 111 P~lIt~~mv~~Mk~GSVIVDvaidqG 136 (168)
T d1pjca1 111 PILVPASLVEQMRTGSVIVDVAVDQG 136 (168)
T ss_dssp CCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred CeeecHHHHhhcCCCcEEEEeecCCC
Confidence 134789999999999999976553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.44 E-value=6.5e-07 Score=70.70 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=74.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC-CC----------------------HH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS-SD----------------------PA 239 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~-~~----------------------~~ 239 (359)
+..+|+|+|+|.+|+.|+..|+.+|++|.+.|.+.++++++ ++++...+... .. .+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l-~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH-HHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 34689999999999999999999999999999999999999 78876544210 00 11
Q ss_pred HHHHhcCCccEEEECCCCh------hhHHHHHhccccCCEEEEecCCC
Q 018246 240 KVKAAMGTMDYIIDTVSAV------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+.+.....|+||-++--+ ..-+..++.|+||+.+|++...+
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidq 154 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA 154 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecC
Confidence 2333345899999877321 13478999999999999997544
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.20 E-value=7e-06 Score=66.23 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=66.3
Q ss_pred HhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-----CcEEecCCCHHHHHHhcCCcc
Q 018246 176 KYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-----ADAFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-----~~~v~~~~~~~~~~~~~~~~d 249 (359)
...+.--+|++|||.|+ |++|..+++.+...|++|++++|++++.+.+.+++. .....|..+.+.+.+..+++|
T Consensus 15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iD 94 (191)
T d1luaa1 15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAH 94 (191)
T ss_dssp HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcC
Confidence 44443358999999986 999999999999999999999999998877755543 234566777778888888999
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++|++.|.
T Consensus 95 ilin~Ag~ 102 (191)
T d1luaa1 95 FVFTAGAI 102 (191)
T ss_dssp EEEECCCT
T ss_pred eeeecCcc
Confidence 99999874
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.6e-05 Score=66.67 Aligned_cols=98 Identities=26% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|.+.++.+...|++|+++++++++++.+.++++.+ ...|-.+.+.++++ .++.|++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL 82 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence 5889999986 99999999999999999999999999998887777743 33455555443333 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhcc--ccCCEEEEecCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLL--KVNGKLVTVGLP 280 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~ 280 (359)
++++|.. ...+.++..| +.+|++|.++..
T Consensus 83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~ 138 (243)
T d1q7ba_ 83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV 138 (243)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence 9998753 1234556666 346999999753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=97.98 E-value=2.5e-05 Score=65.85 Aligned_cols=99 Identities=17% Similarity=0.287 Sum_probs=73.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.++++.. ...|-.+.+.++++ .+++|++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 83 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL 83 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence 5889999986 89999999999999999999999999999888888743 23455555444433 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhcc--ccCCEEEEecCCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLL--KVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~ 281 (359)
++++|.. ...+.++..| +.+|++|.++...
T Consensus 84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~ 140 (254)
T d1hdca_ 84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA 140 (254)
T ss_dssp EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccch
Confidence 9998743 1223344444 3369999997644
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=97.94 E-value=3.7e-05 Score=64.76 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=74.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe---cCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL---VSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++.+.+.++++...+. |-.+.+.++++ .+.+|++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil 84 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL 84 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence 6789999886 99999999999999999999999999999888888865433 34444333332 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhccc-cCCEEEEecCCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLLK-VNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l~-~~G~~v~~g~~~ 281 (359)
++++|.. .....++..|+ .+|++|.++...
T Consensus 85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~ 140 (253)
T d1hxha_ 85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS 140 (253)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence 9999852 12344555664 579999997644
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=2.8e-05 Score=65.13 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=62.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhc---CCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAM---GTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~---~~~d~vid~~g 256 (359)
.|+++||.|+ +++|.+.++.+...|++|+++++++++++.+.++++.. ..+|-.+.+.++++. +++|++++++|
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg 85 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA 85 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEeccc
Confidence 7899999986 99999999999999999999999999998887777632 345667766666654 48999999887
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 86 ~ 86 (244)
T d1pr9a_ 86 V 86 (244)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=5.6e-05 Score=63.39 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=72.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.|+++||.|+ +++|++.++.+...|++|++.+++++..+.+ ++.+... ..|-.+.+.++++ .++.|++++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn 82 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA-EAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN 82 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHH-HHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 6899999986 9999999999999999999999998887665 7777543 3455665444333 258999999
Q ss_pred CCCCh-------------------------hhHHHHHhcccc--CCEEEEecCCC
Q 018246 254 TVSAV-------------------------HSLAPLLGLLKV--NGKLVTVGLPE 281 (359)
Q Consensus 254 ~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~ 281 (359)
++|.. ...+.++..|+. +|++|.++...
T Consensus 83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~ 137 (248)
T d2d1ya1 83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ 137 (248)
T ss_dssp CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence 98742 123445566644 68999987644
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.84 E-value=4.6e-05 Score=63.67 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=61.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-c-EEecCCCHHHHHHhc---CCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-D-AFLVSSDPAKVKAAM---GTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~-~v~~~~~~~~~~~~~---~~~d~vid~~g 256 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.++.+. . ...|-.+.+.++++. +++|++++++|
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg 83 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA 83 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCc
Confidence 5899999986 8999999999999999999999999998888777763 2 334666666666554 48999999987
Q ss_pred C
Q 018246 257 A 257 (359)
Q Consensus 257 ~ 257 (359)
.
T Consensus 84 ~ 84 (242)
T d1cyda_ 84 L 84 (242)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=7.6e-05 Score=62.36 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=72.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ +++|...+......|++|+++++++++++.+.+ +.|.+ ...|.++.+.+..+ .+.+
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i 85 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV 85 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999986 899999999999999999999999998776644 34432 23455665443332 3479
Q ss_pred cEEEECCCCh-------------------------hhHHHHHhcccc--CCEEEEecCCCCCe
Q 018246 249 DYIIDTVSAV-------------------------HSLAPLLGLLKV--NGKLVTVGLPEKPL 284 (359)
Q Consensus 249 d~vid~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~~~~ 284 (359)
|++++++|.. ...+.++..|.. +|+++.++......
T Consensus 86 dilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~ 148 (244)
T d1yb1a_ 86 SILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV 148 (244)
T ss_dssp SEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC
T ss_pred ceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC
Confidence 9999999863 122345555644 57899998766543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.83 E-value=0.00016 Score=60.69 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH----HHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI----SKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++.+... ++.|.+. ..|-.+++.++++ .++
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK 83 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5789999986 99999999999999999999999998866543 3446432 2355565444333 258
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~ 280 (359)
+|++++++|.. ...+.++..|+ .+|+++.++..
T Consensus 84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~ 143 (251)
T d1vl8a_ 84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL 143 (251)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence 99999999852 12345666774 45899988753
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.83 E-value=3.8e-05 Score=59.73 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=62.2
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEC
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+..+. -.+.+|||+|+|.+|.++++.+...|+ +++++.|+.++.+.+.+++|... ++++ .+......+|+||.|
T Consensus 17 ~~~~~-l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~-~~~~---~~~~~l~~~Divi~a 91 (159)
T d1gpja2 17 RELGS-LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA-VRFD---ELVDHLARSDVVVSA 91 (159)
T ss_dssp HHHSC-CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE-CCGG---GHHHHHHTCSEEEEC
T ss_pred HHhCC-cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhccc-ccch---hHHHHhccCCEEEEe
Confidence 33445 478899999999999999999999998 79999999999888878888543 3333 333444589999999
Q ss_pred CCChh
Q 018246 255 VSAVH 259 (359)
Q Consensus 255 ~g~~~ 259 (359)
++.+.
T Consensus 92 tss~~ 96 (159)
T d1gpja2 92 TAAPH 96 (159)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98753
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.83 E-value=5.1e-05 Score=59.52 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=59.7
Q ss_pred hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEE
Q 018246 173 SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v 251 (359)
..++.... .++++|||+|+|+.+.+++..++..|+ +|+++.|+.++.+.+.+.++...+-... ...+|++
T Consensus 7 ~~l~~~~~-~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--------~~~~Dli 77 (167)
T d1npya1 7 KLIEKYHL-NKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--------NQQADIL 77 (167)
T ss_dssp HHHHHTTC-CTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--------TCCCSEE
T ss_pred HHHHHcCC-CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--------ccchhhh
Confidence 34555555 578899999999999999999999998 8999999999988887778765542211 1368999
Q ss_pred EECCC
Q 018246 252 IDTVS 256 (359)
Q Consensus 252 id~~g 256 (359)
++|++
T Consensus 78 INaTp 82 (167)
T d1npya1 78 VNVTS 82 (167)
T ss_dssp EECSS
T ss_pred eeccc
Confidence 99876
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.83 E-value=1.8e-05 Score=64.93 Aligned_cols=101 Identities=22% Similarity=0.214 Sum_probs=69.7
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHH---cCCcEEe-cCCCHHHHHHhcCCc
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISK---LGADAFL-VSSDPAKVKAAMGTM 248 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~~~~ 248 (359)
+... .+++|++||-+|+|. |..++.+|+..|. +|+.++.+++..+.+.+. .+.+.+. ...+........+.|
T Consensus 68 l~~l-~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~f 145 (213)
T d1dl5a1 68 MEWV-GLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY 145 (213)
T ss_dssp HHHT-TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHhh-hccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccch
Confidence 4444 459999999999876 8888889988764 899999999887776433 3332221 111111111112479
Q ss_pred cEEEECCCChhhHHHHHhccccCCEEEEe
Q 018246 249 DYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 249 d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
|+|+.+.+-....+..++.|+|||+++..
T Consensus 146 D~I~~~~~~~~~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 146 DVIFVTVGVDEVPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp EEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred hhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence 99998877666457889999999999874
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=97.81 E-value=9.9e-05 Score=62.29 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=70.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.++ .|.+ ...|-.+.+.++++ .+++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 6899999986 9999999999999999999999999887766444 3433 23355555443333 2589
Q ss_pred cEEEECCCCh--------------------------hhHHHHHhcc--ccCCEEEEecCC
Q 018246 249 DYIIDTVSAV--------------------------HSLAPLLGLL--KVNGKLVTVGLP 280 (359)
Q Consensus 249 d~vid~~g~~--------------------------~~~~~~~~~l--~~~G~~v~~g~~ 280 (359)
|++++++|.. .....++..| +.+|++|.++..
T Consensus 84 DilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~ 143 (260)
T d1zema1 84 DFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM 143 (260)
T ss_dssp CEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred CeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeech
Confidence 9999988742 1233445544 567999999753
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=3.1e-05 Score=61.04 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=71.8
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhcCCc
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~ 248 (359)
..+|+..+...+|++|||+|+|+.+.+++..+...|++|+++.|+.++.+.+.+.+... ..+...+ .....+
T Consensus 6 ~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-----~~~~~~ 80 (170)
T d1nyta1 6 LSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE-----LEGHEF 80 (170)
T ss_dssp HHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-----GTTCCC
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccc-----cccccc
Confidence 44566666556899999999999999999999999999999999999988886766521 2222111 112478
Q ss_pred cEEEECCCChhh---HHHHHhccccCCEEEEecCC
Q 018246 249 DYIIDTVSAVHS---LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 249 d~vid~~g~~~~---~~~~~~~l~~~G~~v~~g~~ 280 (359)
|++++|+..... ...-...+.++..++++-..
T Consensus 81 dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~ 115 (170)
T d1nyta1 81 DLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQ 115 (170)
T ss_dssp SEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCC
T ss_pred ceeecccccCcccCCCCCcHHHhccCcEEEEeecC
Confidence 999999865431 01113446666666666443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00014 Score=61.00 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=70.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-----Cc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-----AD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-----~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.+++. .. ...|-.+.+.++++ .+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5889999986 999999999999999999999999998877755542 12 22355665444433 25
Q ss_pred CccEEEECCCCh-----------------hhHHHHHhcccc-----CCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV-----------------HSLAPLLGLLKV-----NGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~-----------------~~~~~~~~~l~~-----~G~~v~~g~~~ 281 (359)
++|++++++|.. .....++..|.+ +|++|.++...
T Consensus 82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~ 138 (254)
T d2gdza1 82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 138 (254)
T ss_dssp CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence 899999999853 112334444432 48899987543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.78 E-value=5.9e-05 Score=63.00 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=61.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAA-------MGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid 253 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.+++++..+ .|-.+.+.++++ .+++|++++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn 83 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH 83 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence 5789999986 8999999999999999999999999999998788886543 455665544433 258999999
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
++|.
T Consensus 84 nAG~ 87 (242)
T d1ulsa_ 84 YAGI 87 (242)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9875
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=97.77 E-value=0.00021 Score=59.52 Aligned_cols=99 Identities=24% Similarity=0.326 Sum_probs=75.2
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF---LVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|.+.++-+...|++|++++++.++.+...++++.+.. .|-++.+.++++ .+++|+.
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL 83 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV 83 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence 6899999986 8999999999999999999999999999999888886432 355555544443 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+++++.. .........+..++.++.++...
T Consensus 84 innAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a 138 (241)
T d2a4ka1 84 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA 138 (241)
T ss_dssp EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc
Confidence 9988643 12344566777888877776544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=6.4e-05 Score=62.85 Aligned_cols=99 Identities=23% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++.+.+.++++... ..|-.+.+.++++ .+++|++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil 84 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence 6899999986 999999999999999999999999999998888887432 2355555444333 2589999
Q ss_pred EECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 252 IDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
++++|.. ...+.+...|. .+|++|.++...
T Consensus 85 innAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~ 141 (244)
T d1nffa_ 85 VNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIE 141 (244)
T ss_dssp EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred EECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccc
Confidence 9999853 11233444553 468999997654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=7.9e-05 Score=62.50 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=72.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhc-------CCccEEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAM-------GTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~-------~~~d~vi 252 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.++++.. ...|-.+.+.++++. ++.|+++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV 84 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV 84 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 6899999986 99999999999999999999999999998887776632 234555655444432 5899999
Q ss_pred ECCCCh--------------------------hhHHHHHhcccc-CCEEEEecCC
Q 018246 253 DTVSAV--------------------------HSLAPLLGLLKV-NGKLVTVGLP 280 (359)
Q Consensus 253 d~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~~ 280 (359)
+++|.. ...+.++..|+. +|+++.++..
T Consensus 85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~ 139 (250)
T d1ydea1 85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL 139 (250)
T ss_dssp ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence 998732 123345555544 5899998753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00021 Score=60.07 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC--c---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA--D---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~--~---~v~~~~~~~~~~~~-------~~ 246 (359)
+|+++||.|+ +++|.+.+..+.+.|++|+++++++++++.+.+++ +. + ...|-.+++.++.+ .+
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5789999986 99999999999999999999999999877764443 31 2 22355665443332 35
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
++|++++++|.
T Consensus 89 ~iD~lVnnAg~ 99 (257)
T d1xg5a_ 89 GVDICINNAGL 99 (257)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEecccc
Confidence 89999999985
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.74 E-value=5.1e-05 Score=63.96 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=61.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.+++|.+. ..|-.+.+.++++ .+++|++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil 83 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL 83 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 5789999986 999999999999999999999999999999888988543 3355665544443 2589999
Q ss_pred EECCCC
Q 018246 252 IDTVSA 257 (359)
Q Consensus 252 id~~g~ 257 (359)
++++|.
T Consensus 84 VnnAg~ 89 (256)
T d1k2wa_ 84 VNNAAL 89 (256)
T ss_dssp EECCCC
T ss_pred Eeeccc
Confidence 999884
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.71 E-value=0.00013 Score=57.52 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEec--CCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLV--SSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+++|||+|+|.+|..+++.+...|.+|++++++.++.+.+.++++...+.. ..............|.++.+.......
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~ 81 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA 81 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence 578999999999999999999999999999999999999866666443332 222334444456788888888776645
Q ss_pred HHHHhccccCCEEEEecCC
Q 018246 262 APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~ 280 (359)
.....+++.+-.++.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (182)
T d1e5qa1 82 TVIKSAIRQKKHVVTTSYV 100 (182)
T ss_dssp HHHHHHHHHTCEEECSSCC
T ss_pred HHHHHHHhhccceeecccC
Confidence 5556666777777766543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=6.7e-05 Score=63.92 Aligned_cols=96 Identities=25% Similarity=0.409 Sum_probs=67.9
Q ss_pred CCEE-EEECC-chHHHHHHH-HHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCC
Q 018246 184 GKHL-GVAGL-GGLGHVAVK-IGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 184 g~~V-lI~G~-g~vG~~a~~-la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
|.+| ||.|+ +++|+++++ |++..|++|++++|++++.+.+.+++ +.+ ...|-.+.+.++++ .+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 6677 56686 999999776 56667999999999999987765544 322 23455665444333 258
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~ 279 (359)
+|++++++|.. ...+.++..|++.|+++.++.
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 99999999852 123456778888999999865
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=97.69 E-value=7e-05 Score=63.87 Aligned_cols=74 Identities=26% Similarity=0.305 Sum_probs=59.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v 251 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.+++|.+. ..|..+.+.++++ .+.+|++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil 83 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL 83 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence 5899999986 999999999999999999999999999988878887432 3355555444333 2589999
Q ss_pred EECCC
Q 018246 252 IDTVS 256 (359)
Q Consensus 252 id~~g 256 (359)
++++|
T Consensus 84 vnnAG 88 (276)
T d1bdba_ 84 IPNAG 88 (276)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 99887
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.69 E-value=0.00012 Score=61.42 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD---AFLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~~ 248 (359)
.++++||.|+ +++|++.++.+...|++|+++++++++++.+.++ .|.+ ...|-.+.+.+.++ .+++
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 88 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV 88 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence 4788999986 8999999999999999999999999887766443 4433 23355565444333 2589
Q ss_pred cEEEECCCCh-------------------------hhHHHHHhcc--ccCCEEEEecCCC
Q 018246 249 DYIIDTVSAV-------------------------HSLAPLLGLL--KVNGKLVTVGLPE 281 (359)
Q Consensus 249 d~vid~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~ 281 (359)
|+++++.|.. .....++..| ..+|++|.++...
T Consensus 89 Dilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~ 148 (251)
T d2c07a1 89 DILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV 148 (251)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred eeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHH
Confidence 9999988753 1223344455 4469999997544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.68 E-value=0.00016 Score=60.90 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCcE---EecCCCHHHHHHh-------cC-C
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GADA---FLVSSDPAKVKAA-------MG-T 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~-~ 247 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.+++ |... ..|-.+.+.++++ .+ .
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~ 86 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK 86 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 6899999986 89999999999999999999999999887765543 3322 2355555433332 23 6
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhcc--ccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLL--KVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~ 281 (359)
+|++++++|.. .....+...| ..+|++|.++...
T Consensus 87 idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~ 147 (259)
T d2ae2a_ 87 LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVS 147 (259)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGG
T ss_pred ceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccc
Confidence 89999998842 1123445555 3468999997644
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00013 Score=61.46 Aligned_cols=99 Identities=23% Similarity=0.294 Sum_probs=67.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHh-------c-CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAA-------M-GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~-~~ 247 (359)
+|+++||.|+ +++|+++++.+...|++|+++++++++++.+.+++ +.. ...|..+.+.++++ . +.
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~ 86 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK 86 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence 5899999986 99999999999999999999999999887765543 322 23455555433322 1 35
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
+|++++++|.. ...+.++..|+ .+|+++.++...
T Consensus 87 idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~ 147 (259)
T d1xq1a_ 87 LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIA 147 (259)
T ss_dssp CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---
T ss_pred cccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccc
Confidence 89999998853 11234445553 468999987644
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=97.65 E-value=0.00015 Score=61.38 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=58.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---c--EEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---D--AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---~--~v~~~~~~~~~~~~-------~~~~d 249 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.++++. . ...|-.+.+.++++ .+.+|
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 84 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD 84 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence 6899999986 9999999999999999999999999999888777663 1 22355565444443 25899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 85 ~lVnnAG~ 92 (268)
T d2bgka1 85 IMFGNVGV 92 (268)
T ss_dssp EEEECCCC
T ss_pred eecccccc
Confidence 99998873
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=97.61 E-value=0.00029 Score=58.85 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=69.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEAISKLGADA---FLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.|+++||.|+ +++|+++++.+...|++|++++++++ +.+...++.|.+. ..|-.+.+.++++ .+++|+
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi 83 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI 83 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5789999986 99999999999999999999998764 3444456777542 3355665444433 258999
Q ss_pred EEECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 251 IIDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
+++++|.. ...+.++..|+ .+|++|.++...
T Consensus 84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~ 141 (247)
T d2ew8a1 84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTT 141 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccch
Confidence 99998852 11234555553 358999987644
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.57 E-value=0.00043 Score=51.64 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=60.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVH 259 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~ 259 (359)
+|+|.|.|.+|...++.+...|..|++++.++++.+.+.++++...+. |..+.+.+.++. ...|.++.+.++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence 589999999999999999999999999999999998886667765444 445566666654 58999999888764
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00032 Score=55.64 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=74.2
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHH---HHHcC-----CcEEecCCCHHHHH
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEA---ISKLG-----ADAFLVSSDPAKVK 242 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~---~~~~g-----~~~v~~~~~~~~~~ 242 (359)
..+++..+.--.+++|+|+|+|+.|.+++..+...|+ +++++.|++++.+.+ .++++ ...+.+..+.+.+.
T Consensus 6 ~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T d1vi2a1 6 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA 85 (182)
T ss_dssp HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred HHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchh
Confidence 3455555443477899999999999999999999998 899999988765543 22332 12345555555555
Q ss_pred HhcCCccEEEECCCChh------hHHHHHhccccCCEEEEecCCC
Q 018246 243 AAMGTMDYIIDTVSAVH------SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~------~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.....+|++++|++-.. .+..-...++++..++++-..+
T Consensus 86 ~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p 130 (182)
T d1vi2a1 86 EALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNP 130 (182)
T ss_dssp HHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSS
T ss_pred hhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCc
Confidence 55568999999986322 0111245677888888885543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.54 E-value=0.00025 Score=56.07 Aligned_cols=92 Identities=22% Similarity=0.209 Sum_probs=64.3
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC-------CC--HHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS-------SD--PAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~-------~~--~~~~~~~~~~~d~vid~~ 255 (359)
+++.|+|+|.+|++.+..+...|.+|.++++++++.+.+ ++.+....... .. .....+.....|+++-++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEI-QDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 689999999999999999999999999999999998888 44442211100 00 022445556899999999
Q ss_pred CChh---hHHHHHhccccCCEEEEe
Q 018246 256 SAVH---SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 256 g~~~---~~~~~~~~l~~~G~~v~~ 277 (359)
.... .++.....+.++..++..
T Consensus 81 ~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 81 PAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred chhHHHHHHHHhhhccCCCCEEEEe
Confidence 8765 233444555566655543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.52 E-value=0.00066 Score=49.14 Aligned_cols=96 Identities=9% Similarity=-0.060 Sum_probs=67.5
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhh-HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKK-ESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
.|++|||+|+|.+|..-++.+...|++|++++..... .....++-+.+.+-..-+. .-..++++|+.+.+....-
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~----~dl~~~~lv~~at~d~~~n 86 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE----TLLDSCWLAIAATDDDTVN 86 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG----GGGTTCSEEEECCSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCH----HHhCCCcEEeecCCCHHHH
Confidence 5789999999999999999999999999998765543 2222122223332211111 1234799999999998844
Q ss_pred HHHHhccccCCEEEEecCCCC
Q 018246 262 APLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~ 282 (359)
....+..++.|.+|.+.....
T Consensus 87 ~~i~~~a~~~~ilVNv~D~p~ 107 (113)
T d1pjqa1 87 QRVSDAAESRRIFCNVVDAPK 107 (113)
T ss_dssp HHHHHHHHHTTCEEEETTCTT
T ss_pred HHHHHHHHHcCCEEEeCCChh
Confidence 577788889999998866543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=97.52 E-value=0.00017 Score=60.47 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c---EEecCCCHHHHHHh-------cCCcc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D---AFLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~~-------~~~~d 249 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++.+.+.++++. . ...|-.+.+.+.++ .+++|
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 84 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS 84 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence 5889999986 9999999999999999999999999998888776652 1 22355555443332 25899
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 85 iLVnnAg~ 92 (251)
T d1zk4a1 85 TLVNNAGI 92 (251)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99999875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.52 E-value=0.00069 Score=52.01 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=79.2
Q ss_pred hhHhH-hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 018246 172 YSPMK-YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 172 ~~~l~-~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+.++. .....-.|++|+|.|-|-+|...++.++.+|++|++++..+-+.-++ .--|.. +. .+.++....|+
T Consensus 11 ~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A-~~dG~~-v~------~~~~a~~~adi 82 (163)
T d1li4a1 11 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA-AMEGYE-VT------TMDEACQEGNI 82 (163)
T ss_dssp HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-EC------CHHHHTTTCSE
T ss_pred HHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh-hcCceE-ee------ehhhhhhhccE
Confidence 44443 34555699999999999999999999999999999999998775555 233332 22 23455567899
Q ss_pred EEECCCChhhH-HHHHhccccCCEEEEecCCCC
Q 018246 251 IIDTVSAVHSL-APLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 251 vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~ 282 (359)
++-+.|...++ ..-++.|+++..+..+|....
T Consensus 83 vvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~ 115 (163)
T d1li4a1 83 FVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDV 115 (163)
T ss_dssp EEECSSCSCSBCHHHHTTCCTTEEEEECSSSTT
T ss_pred EEecCCCccchhHHHHHhccCCeEEEEeccccc
Confidence 99999986644 688999999999999987653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.49 E-value=0.00018 Score=59.05 Aligned_cols=98 Identities=16% Similarity=0.076 Sum_probs=67.0
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---cEEecCCCHHHHHHhcCCccEEEE
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---DAFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~vid 253 (359)
....+++|++||-+|+| .|..++.+|+. +.+|+.++.+++..+.+.+.+.. -.++..+..... ...+.||.++-
T Consensus 64 ~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~-~~~~pfD~Iiv 140 (224)
T d1vbfa_ 64 DELDLHKGQKVLEIGTG-IGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVV 140 (224)
T ss_dssp HHTTCCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEE
T ss_pred HHhhhcccceEEEecCC-CCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCchhhcc-hhhhhHHHHHh
Confidence 33445999999999986 36677777775 57999999999888777443331 122222211100 11246999998
Q ss_pred CCCChhhHHHHHhccccCCEEEEe
Q 018246 254 TVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
+.+.+......+++|++||++|..
T Consensus 141 ~~a~~~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 141 WATAPTLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp SSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred hcchhhhhHHHHHhcCCCCEEEEE
Confidence 776666567889999999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00013 Score=60.00 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=68.3
Q ss_pred HhHhc-CCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHHc---CC-------cEEecCCCHHH
Q 018246 174 PMKYY-GMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISKL---GA-------DAFLVSSDPAK 240 (359)
Q Consensus 174 ~l~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~~---g~-------~~v~~~~~~~~ 240 (359)
+++.. ..+++|++||-+|+|. |..++.+|+..| .+|+.++.+++-.+.+.+.+ +. ..+... +...
T Consensus 66 ~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g-D~~~ 143 (224)
T d1i1na_ 66 ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-DGRM 143 (224)
T ss_dssp HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-CGGG
T ss_pred HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe-eccc
Confidence 34443 2468999999999864 777888888766 39999999998776663322 21 111111 1100
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEe
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
.......||+|+.+..-....+..++.|+|||++|..
T Consensus 144 ~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 144 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp CCGGGCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred ccchhhhhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence 0011237999998777666568899999999999874
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=97.44 E-value=0.00047 Score=57.95 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=67.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-hhHHHHH----HHcCCcEE---ecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-KKESEAI----SKLGADAF---LVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-~~~~~~~----~~~g~~~v---~~~~~~~~~~~~-------~~ 246 (359)
+|+++||.|+ +++|++.++.+...|++|+++++++ ++.+.+. ++.|.+.. .|-.+.+.++.+ .+
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 82 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG 82 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5789999886 9999999999999999999999874 4444332 33454432 355555444333 25
Q ss_pred CccEEEECCCCh-------------------------hhHHHHHhcccc--CCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV-------------------------HSLAPLLGLLKV--NGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~-------------------------~~~~~~~~~l~~--~G~~v~~g~~~ 281 (359)
++|++++++|.. .....++..|.. +|++|.++...
T Consensus 83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~ 144 (260)
T d1x1ta1 83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH 144 (260)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence 899999999853 123345556543 58999987644
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=97.43 E-value=0.00028 Score=59.31 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=56.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcE---EecCCCHHHHHHh-------c-CC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADA---FLVSSDPAKVKAA-------M-GT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~-~~ 247 (359)
+|+++||.|+ +++|.+.++.+...|++|+++++++++++.+.++ .+... ..|-.+.+.++++ . +.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~ 84 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK 84 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 6899999986 9999999999999999999999999887766444 44332 3455555443332 2 35
Q ss_pred ccEEEECCCCh
Q 018246 248 MDYIIDTVSAV 258 (359)
Q Consensus 248 ~d~vid~~g~~ 258 (359)
.|++++++|..
T Consensus 85 idilinnag~~ 95 (258)
T d1ae1a_ 85 LNILVNNAGVV 95 (258)
T ss_dssp CCEEEECCCCC
T ss_pred cEEEecccccc
Confidence 89999988853
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.42 E-value=0.00013 Score=59.39 Aligned_cols=101 Identities=27% Similarity=0.320 Sum_probs=69.0
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCcEEecC-CCHHHHHHhcCCccE
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGADAFLVS-SDPAKVKAAMGTMDY 250 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~~v~~~-~~~~~~~~~~~~~d~ 250 (359)
++... +++|++||.+|+|. |..++.+|+..|.+|+.++..++-.+.+ .+++|.+.+... .+...-......||.
T Consensus 71 l~~L~-l~~g~~VLeIGsGs-GY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~ 148 (215)
T d1jg1a_ 71 LEIAN-LKPGMNILEVGTGS-GWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDV 148 (215)
T ss_dssp HHHHT-CCTTCCEEEECCTT-SHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred HHhhc-cCccceEEEecCCC-ChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCccee
Confidence 44444 59999999998764 6777788877788899999998755444 345665433222 221110111247999
Q ss_pred EEECCCChhhHHHHHhccccCCEEEEe
Q 018246 251 IIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 251 vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
++.+.+....-...+++|++||+++..
T Consensus 149 Iiv~~a~~~ip~~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 149 IIVTAGAPKIPEPLIEQLKIGGKLIIP 175 (215)
T ss_dssp EEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred EEeecccccCCHHHHHhcCCCCEEEEE
Confidence 998777666457899999999999875
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.0001 Score=61.61 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=58.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHh---cCCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAA---MGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~---~~~~d~vid~~g~ 257 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++++.+..+.. .+.|....+.++.. .++.|+++++.|.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~ 84 (245)
T d2ag5a1 5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF 84 (245)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecccc
Confidence 6889999986 99999999999999999999999999988875555543 33444444433333 3589999999875
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0005 Score=58.05 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCcEE---ecCCCHHHH-------HHhcCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGADAF---LVSSDPAKV-------KAAMGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~~v---~~~~~~~~~-------~~~~~~ 247 (359)
+|+++||.|+ +++|++.+..+...|++|++++|++++++.+.++ .+.... .+..+.+.. ....+.
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~ 92 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG 92 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhCC
Confidence 6899999986 8999999999999999999999999988777443 233221 233333222 222357
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
.|+++++.|.
T Consensus 93 ~~~li~nag~ 102 (269)
T d1xu9a_ 93 LDMLILNHIT 102 (269)
T ss_dssp CSEEEECCCC
T ss_pred cccccccccc
Confidence 8999987764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=97.40 E-value=0.00057 Score=57.32 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=69.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc-----CCc---EEecCCCHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL-----GAD---AFLVSSDPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~-------~~ 246 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.+++ +.. ...|-.+.+.++++ .+
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 5789999986 89999999999999999999999998876653332 222 22355665544443 25
Q ss_pred CccEEEECCCCh--------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV--------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
++|++++++|.. ...+.++..|+ .+|++|.++...
T Consensus 83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~ 145 (258)
T d1iy8a_ 83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVG 145 (258)
T ss_dssp CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHh
Confidence 899999998731 11233444543 579999997644
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.38 E-value=0.00033 Score=58.81 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=55.6
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCcc
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MGTMD 249 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~d 249 (359)
|+.+||.|+ +++|++.++.+...|++|+++++++++++.+.+ +.|.+. ..|-.+.+.++.+ .+++|
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD 81 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 677899986 999999999999999999999999988776644 345332 2355555444433 25799
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 82 ilVnnAG~ 89 (257)
T d2rhca1 82 VLVNNAGR 89 (257)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 99999885
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.37 E-value=0.00031 Score=59.56 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=56.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CC------cEEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GA------DAFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~------~~v~~~~~~~~~~~~-------~ 245 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.+++ +. ....|-.+.+.++++ .
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5789999986 99999999999999999999999998877664443 21 123355565444433 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+++|++++++|.
T Consensus 84 g~iDilvnnAG~ 95 (272)
T d1xkqa_ 84 GKIDVLVNNAGA 95 (272)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceEEEeCCcc
Confidence 589999999874
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00023 Score=59.81 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=56.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~ 248 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.+ +.|.+. ..|-.+++.+.++ .+++
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i 89 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV 89 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999986 999999999999999999999999988766544 345332 2355555444333 2589
Q ss_pred cEEEECCCC
Q 018246 249 DYIIDTVSA 257 (359)
Q Consensus 249 d~vid~~g~ 257 (359)
|++++++|.
T Consensus 90 DilvnnAG~ 98 (255)
T d1fmca_ 90 DILVNNAGG 98 (255)
T ss_dssp CEEEECCCC
T ss_pred CEeeeCCcC
Confidence 999999875
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.36 E-value=0.00057 Score=58.72 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC---------hhhHHHHHHH---cCCcEEecCCCHHHHHH------
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS---------PKKESEAISK---LGADAFLVSSDPAKVKA------ 243 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~---------~~~~~~~~~~---~g~~~v~~~~~~~~~~~------ 243 (359)
.|+++||.|+ +++|++.++.+...|++|++.+++ .+..+...++ .+.....+..+.+..++
T Consensus 6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 85 (302)
T d1gz6a_ 6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL 85 (302)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence 6889999986 999999999999999999998654 3334333333 34455556555432222
Q ss_pred -hcCCccEEEECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 244 -AMGTMDYIIDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 244 -~~~~~d~vid~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
..+++|++++++|.. ...+.++..|+ .+|++|.++...
T Consensus 86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~ 151 (302)
T d1gz6a_ 86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS 151 (302)
T ss_dssp HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChh
Confidence 235899999998853 12344566663 458999997543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00017 Score=58.34 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
.++|+|+|+ |.+|..++..+...|.+|.+++|++++.... ...+.+.+. |..+.+.+.+...+.|+||.++|...
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~ 81 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDL 81 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-cccccccccccccchhhHHHHhcCCCEEEEEeccCCch
Confidence 468999986 9999999998888999999999998886544 233444332 55666777777889999999997531
Q ss_pred --------hHHHHHhccccC--CEEEEecC
Q 018246 260 --------SLAPLLGLLKVN--GKLVTVGL 279 (359)
Q Consensus 260 --------~~~~~~~~l~~~--G~~v~~g~ 279 (359)
....+++.++.. .+++.++.
T Consensus 82 ~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss 111 (205)
T d1hdoa_ 82 SPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (205)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence 123445555554 37777754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00036 Score=59.94 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=56.9
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc--------CCcE---EecCCCHHHHHHh-----
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL--------GADA---FLVSSDPAKVKAA----- 244 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~--------g~~~---v~~~~~~~~~~~~----- 244 (359)
=.|+++||.|+ +++|+++++.+...|++|+++++++++++.+.+++ +... ..|-.+.+.+.++
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 37899999986 99999999999999999999999998877664443 2222 2355555444433
Q ss_pred --cCCccEEEECCCC
Q 018246 245 --MGTMDYIIDTVSA 257 (359)
Q Consensus 245 --~~~~d~vid~~g~ 257 (359)
.++.|++++++|.
T Consensus 90 ~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 90 DTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCeEEEEeeccc
Confidence 2589999999875
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.35 E-value=0.00029 Score=59.44 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=55.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC------cEEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA------DAFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~------~~v~~~~~~~~~~~~-------~ 245 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.++ .+. ....|-.+.+.++++ .
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6788999886 9999999999999999999999999887776444 221 122355565444433 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
++.|++++++|.
T Consensus 84 g~iDilvnnAG~ 95 (264)
T d1spxa_ 84 GKLDILVNNAGA 95 (264)
T ss_dssp SCCCEEEECCC-
T ss_pred CCCCEeeccccc
Confidence 589999999874
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=0.00031 Score=55.08 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=67.7
Q ss_pred hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c-EEecCCCHHHHHHhcCCcc
Q 018246 173 SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D-AFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~~~~d 249 (359)
.++.......++++|+|+|+|+.+.+++..+...+.+|+++.|+.++.+.+.+.++. . ..+..+ ......+|
T Consensus 7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~-----~~~~~~~d 81 (171)
T d1p77a1 7 TDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD-----SIPLQTYD 81 (171)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG-----GCCCSCCS
T ss_pred HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc-----cccccccc
Confidence 345554444688999999999999999988887777999999999998888777652 1 111111 11124799
Q ss_pred EEEECCCChhhHH----HHHhccccCCEEEEecC
Q 018246 250 YIIDTVSAVHSLA----PLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 250 ~vid~~g~~~~~~----~~~~~l~~~G~~v~~g~ 279 (359)
++++|++... .. .....++++..++++-.
T Consensus 82 iiIN~tp~g~-~~~~~~~~~~~~~~~~~~~D~vy 114 (171)
T d1p77a1 82 LVINATSAGL-SGGTASVDAEILKLGSAFYDMQY 114 (171)
T ss_dssp EEEECCCC--------CCCHHHHHHCSCEEESCC
T ss_pred eeeecccccc-cccccchhhhhhcccceeeeeec
Confidence 9999988543 11 11234556677777654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=97.30 E-value=0.00036 Score=58.68 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH----HHcCCc---EEecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI----SKLGAD---AFLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ +++|+++++.+...|++|+++++++++.+.+. ++.|.+ ...|-.+.+.++++ .++
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP 87 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5789999986 89999999999999999999999988765543 344543 23355565544433 258
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++++.|.
T Consensus 88 iDilVnnAg~ 97 (260)
T d1h5qa_ 88 ISGLIANAGV 97 (260)
T ss_dssp EEEEEECCCC
T ss_pred CcEecccccc
Confidence 9999999874
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00034 Score=48.81 Aligned_cols=71 Identities=20% Similarity=0.162 Sum_probs=49.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhh--HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKK--ESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
.|++|+|+|.|..|+++++++...|++|++.+.++.. .+.+ +.+....+...+...+ .++|.++-+.|-+.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL--PEAVERHTGSLNDEWL----MAADLIVASPGIAL 76 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGS--CTTSCEEESBCCHHHH----HHCSEEEECTTSCT
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHH--hhccceeecccchhhh----ccCCEEEECCCCCC
Confidence 5788999999999999999999999999999976542 2222 1233334444333333 25788888877654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.29 E-value=0.0011 Score=51.38 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=64.4
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEECCCChh---hH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAAMGTMDYIIDTVSAVH---SL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~ 261 (359)
+|.|+|.|.+|...+..++..|.+|++.++++++.+.+ ++.|. +...+.. +.....|+||-++.... .+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a-~~~~~~~~~~~~~------~~~~~~DiIilavp~~~~~~vl 74 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAGQDL------SLLQTAKIIFLCTPIQLILPTL 74 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEESCG------GGGTTCSEEEECSCHHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH-HHhhccceeeeec------ccccccccccccCcHhhhhhhh
Confidence 58899999999999888899999999999999998888 67773 4433211 23457899999987553 34
Q ss_pred HHHHhccccCCEEEEecCC
Q 018246 262 APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~ 280 (359)
+.....+.++..++.++..
T Consensus 75 ~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 75 EKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp HHHGGGSCTTCEEEECCSC
T ss_pred hhhhhhcccccceeecccc
Confidence 4555555666666666543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.28 E-value=0.00015 Score=60.47 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHHH---cC-CcEEecCCCHHHHHHhc-CCccEE
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAISK---LG-ADAFLVSSDPAKVKAAM-GTMDYI 251 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~~---~g-~~~v~~~~~~~~~~~~~-~~~d~v 251 (359)
..++||++||=.|+|. |.++..+|+..| .+|+.++.+++..+.+.+. ++ ...+-.... +...... ..||.|
T Consensus 81 l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~-Di~~~~~~~~fD~V 158 (250)
T d1yb2a1 81 CGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-DIADFISDQMYDAV 158 (250)
T ss_dssp CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-CTTTCCCSCCEEEE
T ss_pred cCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEe-eeecccccceeeee
Confidence 4459999999998865 667777888765 4899999999988887543 22 222211111 1111111 369999
Q ss_pred EECCCC-hhhHHHHHhccccCCEEEEe
Q 018246 252 IDTVSA-VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 id~~g~-~~~~~~~~~~l~~~G~~v~~ 277 (359)
+-.... ...++.+.+.|+|||+++.+
T Consensus 159 ~ld~p~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 159 IADIPDPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EECCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred eecCCchHHHHHHHHHhcCCCceEEEE
Confidence 754544 34689999999999999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=97.27 E-value=0.00051 Score=58.80 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=55.9
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH----HcCCcE-E--ecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS----KLGADA-F--LVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ +++|.++++.+...|++|+++++++++.+.+.+ +.|... . .|..+.+.+..+ .++
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 103 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH 103 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence 6899999986 999999999999999999999999987665544 334332 2 344554443332 258
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++++.|.
T Consensus 104 iDilvnnAg~ 113 (294)
T d1w6ua_ 104 PNIVINNAAG 113 (294)
T ss_dssp CSEEEECCCC
T ss_pred cchhhhhhhh
Confidence 9999999885
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.27 E-value=0.00037 Score=59.14 Aligned_cols=75 Identities=20% Similarity=0.351 Sum_probs=56.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC--c----EEecCCCHHHHHHh-------c
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA--D----AFLVSSDPAKVKAA-------M 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~--~----~v~~~~~~~~~~~~-------~ 245 (359)
.|+++||.|+ +++|++.++.+...|++|+++++++++++.+.++ .|. . ...|-.+.+.++++ .
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 5889999986 9999999999999999999999999887766443 332 1 22355565444433 2
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+.+|++++++|.
T Consensus 83 G~iDilVnnAG~ 94 (274)
T d1xhla_ 83 GKIDILVNNAGA 94 (274)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceEEEeeccc
Confidence 489999999873
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.27 E-value=0.00079 Score=56.20 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=63.4
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc-EEecCCCHHHHHHhcCCccEEEECCC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD-AFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.++|++||-+|+|. |..++.++ ..|++|++++.+++..+.+.+ ..|.. .++..+ ... ....+.||+|+.+..
T Consensus 118 ~~~g~~VLDiGcGs-G~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d-~~~-~~~~~~fD~V~ani~ 193 (254)
T d2nxca1 118 LRPGDKVLDLGTGS-GVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS-LEA-ALPFGPFDLLVANLY 193 (254)
T ss_dssp CCTTCEEEEETCTT-SHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESC-HHH-HGGGCCEEEEEEECC
T ss_pred cCccCEEEEcccch-hHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecc-ccc-cccccccchhhhccc
Confidence 37999999999864 55666555 468999999999998777732 33432 333222 111 112358999997654
Q ss_pred Chh---hHHHHHhccccCCEEEEecC
Q 018246 257 AVH---SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 257 ~~~---~~~~~~~~l~~~G~~v~~g~ 279 (359)
... .+..+.+.|+|+|++++.|.
T Consensus 194 ~~~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 194 AELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHhcCCCcEEEEEec
Confidence 432 34677889999999998653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=97.25 E-value=0.00052 Score=57.01 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=69.7
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHhc
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAAM 245 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~ 245 (359)
+..+.....++||++||=+|+|. |..+..+++..|++|++++.++...+.+.+ +.|.. .++..+-.+ . ...
T Consensus 22 ~~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~ 98 (245)
T d1nkva_ 22 YATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VAN 98 (245)
T ss_dssp HHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCS
T ss_pred HHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-ccc
Confidence 44566666779999999999764 456777888889999999999987766522 34532 222111111 1 112
Q ss_pred CCccEEEECC------CChhhHHHHHhccccCCEEEEe
Q 018246 246 GTMDYIIDTV------SAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 246 ~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
+.||+|+..- .-...+..+.+.|+|||+++..
T Consensus 99 ~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 99 EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEE
Confidence 4799998532 2234678899999999999875
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.00072 Score=56.57 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=66.8
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCcEE--ecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGADAF--LVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~~v--~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ | ++|++.++.+...|++|++.+++++..+.+ .+..+.... .|..+.+.++++ .++
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG 86 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence 6889999996 5 799999999999999999999887654433 233343333 344555443333 258
Q ss_pred ccEEEECCCCh-----------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV-----------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~-----------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.|+.+++++.. .....+...++.+|+++.++...
T Consensus 87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~ 149 (256)
T d1ulua_ 87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYA 149 (256)
T ss_dssp EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGG
T ss_pred ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehH
Confidence 99999988741 01123445677889999886544
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.24 E-value=0.0011 Score=55.45 Aligned_cols=97 Identities=24% Similarity=0.270 Sum_probs=67.3
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC-hhhHHHH---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS-PKKESEA---ISKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~-~~~~~~~---~~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ +++|.+.++.+...|++|++..++ ++..+.+ .++.|.+. ..|..+.+.++.+ .++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 84 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG 84 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 5899999986 999999999999999999987544 4433333 24556443 2344554433332 258
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.|++++++|.. ...+.++..|+.+|+++.+..
T Consensus 85 idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s 141 (259)
T d1ja9a_ 85 LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 141 (259)
T ss_dssp EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence 99999999853 134567778888888887754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.23 E-value=0.0017 Score=54.78 Aligned_cols=98 Identities=23% Similarity=0.260 Sum_probs=69.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHH---HHHcCCcEE---ecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEA---ISKLGADAF---LVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~---~~~~g~~~v---~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ +++|.++++.+...|++|++.+++.+ ..+.+ .++.|.+.. .|-.+.+.+.++ .++
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 96 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 96 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 5889999986 99999999999999999999987643 33333 245564432 345554433332 258
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhccccCCEEEEecCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.|+++++.+.. ...+.+...|...|+++.++..
T Consensus 97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~ 154 (272)
T d1g0oa_ 97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI 154 (272)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence 99999988753 1245677788889999888653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.00036 Score=58.76 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=68.4
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHHH---HcCC-c-EEecCCCHHHHHHhc-CCc
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAIS---KLGA-D-AFLVSSDPAKVKAAM-GTM 248 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~~---~~g~-~-~v~~~~~~~~~~~~~-~~~ 248 (359)
....++||++||=.|+|. |.+++.+|+..| .+|+.++.+++..+.+.+ ++|. + ..+...+. ..... ..+
T Consensus 97 ~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~--~~~~~~~~~ 173 (266)
T d1o54a_ 97 MMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI--SEGFDEKDV 173 (266)
T ss_dssp HHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG--GGCCSCCSE
T ss_pred HhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc--cccccccce
Confidence 444459999999999876 677888898875 499999999998877733 3443 2 22222221 11111 268
Q ss_pred cEEEECCCCh-hhHHHHHhccccCCEEEEe
Q 018246 249 DYIIDTVSAV-HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 249 d~vid~~g~~-~~~~~~~~~l~~~G~~v~~ 277 (359)
|.|+.-...+ ..++.+.+.|+|||+++.+
T Consensus 174 D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 174 DALFLDVPDPWNYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp EEEEECCSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred eeeEecCCCHHHHHHHHHhhcCCCCEEEEE
Confidence 8887666654 4789999999999999875
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.18 E-value=0.0019 Score=49.19 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=80.4
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+....+-.|++++|.|=|-+|.-.++-+|.+|++|+++..+|-+.-++ .--|. .+. .+.++.+..|+++-++
T Consensus 15 r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA-~mdGf-~v~------~~~~a~~~aDi~vTaT 86 (163)
T d1v8ba1 15 RATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-VMEGF-NVV------TLDEIVDKGDFFITCT 86 (163)
T ss_dssp HHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-HTTTC-EEC------CHHHHTTTCSEEEECC
T ss_pred HHhCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH-HhcCC-ccC------chhHccccCcEEEEcC
Confidence 334555799999999999999999999999999999999998765444 22222 222 2456667899999999
Q ss_pred CChhhH-HHHHhccccCCEEEEecCCCCCeeeCHHH
Q 018246 256 SAVHSL-APLLGLLKVNGKLVTVGLPEKPLEVPIFA 290 (359)
Q Consensus 256 g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~ 290 (359)
|...++ ..-++.|+.+..+...|-.. ..++...
T Consensus 87 Gn~~vI~~~h~~~MKdgaIl~N~GHfd--~EIdv~~ 120 (163)
T d1v8ba1 87 GNVDVIKLEHLLKMKNNAVVGNIGHFD--DEIQVNE 120 (163)
T ss_dssp SSSSSBCHHHHTTCCTTCEEEECSSTT--TSBCHHH
T ss_pred CCCccccHHHHHHhhCCeEEEeccccc--hhhhhHH
Confidence 998744 57799999999999998765 3444433
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.14 E-value=0.0015 Score=53.83 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=53.5
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCC-HHHHHHhcCCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSD-PAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~~d~vid~~g~ 257 (359)
+|+++||.|+ +++|.+.++.+...|++|++++++++.+ ++.+...+ .|-++ .+.+.+..+.+|++++++|.
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l----~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~ 76 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG 76 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HhcCCcEEEcchHHHHHHHHHHhCCCcEEEecccc
Confidence 5789999986 9999999999999999999999987665 34454433 23332 34444445689999999875
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.12 E-value=0.00088 Score=56.02 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=53.9
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCccE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADA---FLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~d~ 250 (359)
+.+||.|+ +++|++.++.+...|++|+++++++++++.+.+ +.|.+. ..|-.+.+.+.++ .+++|+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 34688886 899999999999999999999999998776644 345332 2455665444433 258999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
+++++|.
T Consensus 82 lVnnAG~ 88 (255)
T d1gega_ 82 IVNNAGV 88 (255)
T ss_dssp EEECCCC
T ss_pred EEecccc
Confidence 9999874
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=97.09 E-value=0.0012 Score=54.56 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCe-------EEEEeCChhhHHHHHHH---cCCcE---EecCCCHHHHHHh-------
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLK-------VTVISTSPKKESEAISK---LGADA---FLVSSDPAKVKAA------- 244 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~-------V~~v~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~------- 244 (359)
.|||.|+ +++|++.+..+...|++ |+..++++++++.+.++ .|... ..|-++.+.++++
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4688886 89999999888888987 89999999887766443 34322 2355665444333
Q ss_pred cCCccEEEECCCCh-------------------------hhHHHHHhccc--cCCEEEEecCCC
Q 018246 245 MGTMDYIIDTVSAV-------------------------HSLAPLLGLLK--VNGKLVTVGLPE 281 (359)
Q Consensus 245 ~~~~d~vid~~g~~-------------------------~~~~~~~~~l~--~~G~~v~~g~~~ 281 (359)
.+.+|++++++|.. ...+.++..|+ .+|+++.++...
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~ 146 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVA 146 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechh
Confidence 25899999998853 12344556663 468999987654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.05 E-value=0.0016 Score=48.49 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=64.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChhhH--
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVHSL-- 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~-- 261 (359)
+++|+|.|.+|..+++.+...|.+|++++.++++.+.+ ++.+...++ |..+++.+.++. ...|.++-+++....-
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~-~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~ 80 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST 80 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHT-TTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHH-HHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence 57888999999999999999999999999999999988 667765444 334445555542 4789888888764312
Q ss_pred -HHHHhccccCCEEEEe
Q 018246 262 -APLLGLLKVNGKLVTV 277 (359)
Q Consensus 262 -~~~~~~l~~~G~~v~~ 277 (359)
-.....+.+..+++..
T Consensus 81 ~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 81 LTTLLLKELDIPNIWVK 97 (134)
T ss_dssp HHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHcCCCcEEee
Confidence 2233344455565544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.05 E-value=0.0026 Score=48.41 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=61.1
Q ss_pred EEEEECCchHHHHHHH-HHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 186 HLGVAGLGGLGHVAVK-IGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~-la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
+|.++|+|.+|.+.++ +.+.-+.+|++.++++++.+.+.+++|....-+... ....|+||-|+.-.. +...
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-------v~~~Div~lavkP~~-~~~v 73 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-------LHSDDVLILAVKPQD-MEAA 73 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-------CCTTSEEEECSCHHH-HHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-------ccccceEEEecCHHH-HHHh
Confidence 5788999999998777 455544799999999999998877788654322211 235799999987544 7777
Q ss_pred HhccccCCEEEE
Q 018246 265 LGLLKVNGKLVT 276 (359)
Q Consensus 265 ~~~l~~~G~~v~ 276 (359)
.+.+++.++++.
T Consensus 74 ~~~l~~~~~~vi 85 (152)
T d1yqga2 74 CKNIRTNGALVL 85 (152)
T ss_dssp HTTCCCTTCEEE
T ss_pred HHHHhhcccEEe
Confidence 888877766554
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.04 E-value=0.0012 Score=50.52 Aligned_cols=86 Identities=14% Similarity=0.257 Sum_probs=67.3
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLL 265 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~ 265 (359)
+|.|+|+|.+|.+.+.-....|.++++.++++++.+.+.+++|....- +. .++....|+||-|+.... ++..+
T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~---~~---~~~~~~~dvIilavkp~~-~~~vl 74 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM---SH---QDLIDQVDLVILGIKPQL-FETVL 74 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS---SH---HHHHHTCSEEEECSCGGG-HHHHH
T ss_pred EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec---hh---hhhhhccceeeeecchHh-HHHHh
Confidence 478899999999988877777889999999999988887788865432 21 233347899999997555 88888
Q ss_pred hccccCCEEEEec
Q 018246 266 GLLKVNGKLVTVG 278 (359)
Q Consensus 266 ~~l~~~G~~v~~g 278 (359)
+.++++..++.+.
T Consensus 75 ~~l~~~~~iis~~ 87 (152)
T d2ahra2 75 KPLHFKQPIISMA 87 (152)
T ss_dssp TTSCCCSCEEECC
T ss_pred hhcccceeEeccc
Confidence 9998888777663
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.03 E-value=0.00019 Score=59.51 Aligned_cols=93 Identities=23% Similarity=0.204 Sum_probs=61.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC--HHH-------HHHhc--CCccE
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD--PAK-------VKAAM--GTMDY 250 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~--~~~-------~~~~~--~~~d~ 250 (359)
.|++|||.|+ +++|++.++.....|++|+++++++.+.. .....+.... .+. +.... +++|+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~ 74 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA 74 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence 4789999986 99999999999999999999987654321 1111111111 111 11111 26899
Q ss_pred EEECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+++++|.- .....++..|+++|+++.++...
T Consensus 75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~ 131 (236)
T d1dhra_ 75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA 131 (236)
T ss_dssp EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHH
Confidence 99998741 12234666788999999997654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=97.03 E-value=0.0016 Score=54.66 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-hHHHH---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-KESEA---ISKLGADA---FLVSSDPAKVKAA-------MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-~~~~~---~~~~g~~~---v~~~~~~~~~~~~-------~~~ 247 (359)
.|+++||.|+ +++|++.++.+...|++|++++++.+ +.+.+ +++.|.+. ..|-.+.+.+.++ .++
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 85 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK 85 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5789999986 99999999999999999999998854 33332 24556432 2355555444433 258
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|++++++|.
T Consensus 86 iDiLVnnAG~ 95 (261)
T d1geea_ 86 LDVMINNAGL 95 (261)
T ss_dssp CCEEEECCCC
T ss_pred CCEeecccee
Confidence 9999999875
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=97.02 E-value=0.00052 Score=54.59 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-E----------------EecCCCHHHHHH
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-A----------------FLVSSDPAKVKA 243 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~----------------v~~~~~~~~~~~ 243 (359)
+.||++||.+|+|. |..+..+|++ |++|++++.+++.++.+.++.+.. . ++..+-.+.-..
T Consensus 18 ~~~~~rvLd~GCG~-G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGK-SQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCC-SHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcC-CHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 48999999999864 6777788875 999999999999998885544321 1 000000000011
Q ss_pred hcCCccEEEECCCCh--------hhHHHHHhccccCCEEEEe
Q 018246 244 AMGTMDYIIDTVSAV--------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 244 ~~~~~d~vid~~g~~--------~~~~~~~~~l~~~G~~v~~ 277 (359)
....+|+|++...-. ..+..+.+.|+|+|+++..
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 113689888754421 2457788999999997665
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.98 E-value=0.001 Score=54.53 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcC---C-cEEe-cCCCHHHHHHhcCC
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLG---A-DAFL-VSSDPAKVKAAMGT 247 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g---~-~~v~-~~~~~~~~~~~~~~ 247 (359)
+.... ++||++||=+|+|. |..+..+|+..|- +|++++.+++.++.+.+..- . ..+. +....+........
T Consensus 66 l~~l~-i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 66 LKNFP-IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCC-CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred ccccc-cCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence 33444 49999999999864 7788889998864 99999999998887744332 1 2222 22222222222347
Q ss_pred ccEEEECCCCh----hhHHHHHhccccCCEEEEe
Q 018246 248 MDYIIDTVSAV----HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 248 ~d~vid~~g~~----~~~~~~~~~l~~~G~~v~~ 277 (359)
+|+++..+... ..+..+.+.|+++|+++.+
T Consensus 144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence 89888655432 2467888999999998875
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.98 E-value=0.0017 Score=54.07 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=64.8
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCcEEecCCCHH-HH---HHhcCCccEEEECCCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGADAFLVSSDPA-KV---KAAMGTMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~~v~~~~~~~-~~---~~~~~~~d~vid~~g~ 257 (359)
++||.|+ +++|++++..+...|++|++.+++.++.+++.. .+....+.+..+.. .+ .+..++.|++++++|.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg~ 81 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIF 81 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 6889886 899999999999999999999998887776622 23233444444432 22 2223589999987663
Q ss_pred h--------------------------hhHHHHHhccc--cCCEEEEecCCCC
Q 018246 258 V--------------------------HSLAPLLGLLK--VNGKLVTVGLPEK 282 (359)
Q Consensus 258 ~--------------------------~~~~~~~~~l~--~~G~~v~~g~~~~ 282 (359)
. ...+.++..|+ .+|++|.++....
T Consensus 82 ~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~ 134 (252)
T d1zmta1 82 APEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATP 134 (252)
T ss_dssp CCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccc
Confidence 1 11233445553 3699999976553
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.97 E-value=0.0012 Score=55.27 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=68.0
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHH---cC---CcEE-ecCCCHHHHHHh-
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISK---LG---ADAF-LVSSDPAKVKAA- 244 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~---~g---~~~v-~~~~~~~~~~~~- 244 (359)
+.....++||++||=.|+|. |.++..+|+..|. +|+.++.+++..+.+.+. ++ .+.+ +...+... ..+
T Consensus 88 Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~-~~~~ 165 (264)
T d1i9ga_ 88 IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD-SELP 165 (264)
T ss_dssp HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG-CCCC
T ss_pred HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc-cccc
Confidence 33445559999999998764 6778888888764 999999999988877432 11 1211 11111111 011
Q ss_pred cCCccEEEECCCCh-hhHHHHHhccccCCEEEEe
Q 018246 245 MGTMDYIIDTVSAV-HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 245 ~~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~ 277 (359)
...+|.||-....+ ..++.+.+.|+|+|+++.+
T Consensus 166 ~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 166 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCCcceEEEecCCHHHHHHHHHhccCCCCEEEEE
Confidence 23799887555544 4688999999999999876
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=96.95 E-value=0.0022 Score=53.13 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=64.5
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEe-CChhhHHHHH---HHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVIS-TSPKKESEAI---SKLGAD---AFLVSSDPAKVKAA-------MGTMDY 250 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~-~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~-------~~~~d~ 250 (359)
.|||.|+ +++|++.++.+...|++|++.+ ++++..+.+. ++.|.+ ...|-.+.+.++++ .+++|+
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV 82 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 5788886 9999999999999999998875 5555554442 345543 22355555444333 258999
Q ss_pred EEECCCCh-------------------------hhHHHHHhcc--ccCCEEEEecCCC
Q 018246 251 IIDTVSAV-------------------------HSLAPLLGLL--KVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~ 281 (359)
+++++|.. ...+.++..| +.+|++|.++...
T Consensus 83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~ 140 (244)
T d1edoa_ 83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV 140 (244)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChh
Confidence 99998753 1234456666 4579999997644
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.93 E-value=0.0053 Score=47.50 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=67.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGA-DAFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
+|+|+|.|.+|...+..++..|. +|++.+++++..+.+ ++.+. +......+. ......|+++-|+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a-~~~~~~~~~~~~~~~----~~~~~~dlIila~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTSIAK----VEDFSPDFVMLSSPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESCGGG----GGGTCCSEEEECSCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH-HHhhcchhhhhhhhh----hhccccccccccCCchhhhh
Confidence 69999999999999999998885 899999999999888 66774 444432211 11236899999998654
Q ss_pred hHHHHHhccccCCEEEEecCCCC
Q 018246 260 SLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
.++.....+.++..+++++....
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~k~ 100 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSVKG 100 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCT
T ss_pred hhhhhhccccccccccccccccH
Confidence 34455667777788888876543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.88 E-value=0.0023 Score=52.14 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=65.4
Q ss_pred HhHhc-CCCCCCCEEEEECC--chHHHHHHHHHHHCCC----eEEEEeCChhhHHHHHHHc--------CCc--EEecCC
Q 018246 174 PMKYY-GMTEPGKHLGVAGL--GGLGHVAVKIGKAFGL----KVTVISTSPKKESEAISKL--------GAD--AFLVSS 236 (359)
Q Consensus 174 ~l~~~-~~~~~g~~VlI~G~--g~vG~~a~~la~~~g~----~V~~v~~~~~~~~~~~~~~--------g~~--~v~~~~ 236 (359)
.++.. ..+++|++||.+|+ |-....+.+++...|. +|+.++..++-.+.+.+.+ +.. .++..
T Consensus 70 ~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~- 148 (223)
T d1r18a_ 70 ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG- 148 (223)
T ss_dssp HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES-
T ss_pred HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec-
Confidence 34443 35689999999975 5555556666666663 8999999887665553221 111 12211
Q ss_pred CHHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEe
Q 018246 237 DPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 237 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
+........+.||.++-+.+-...-+..++.|++||++|..
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence 11110011237999998777766557889999999999874
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.0011 Score=56.42 Aligned_cols=100 Identities=13% Similarity=0.077 Sum_probs=67.0
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC-cEE-ecCCCHHHHHHhcCCc
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA-DAF-LVSSDPAKVKAAMGTM 248 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~-~~v-~~~~~~~~~~~~~~~~ 248 (359)
.+-....+++|++||-+|+|- |..++.+|+..|++|+++..+++..+.+.+. .|. +.+ +...+. ..+.+.+
T Consensus 53 ~~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~f 128 (285)
T d1kpga_ 53 LALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFDEPV 128 (285)
T ss_dssp HHHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCCCCC
T ss_pred HHHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh---hcccccc
Confidence 344445569999999999864 5667788988999999999999988777332 331 111 111111 1233578
Q ss_pred cEEEE-----CCCCh---hhHHHHHhccccCCEEEEe
Q 018246 249 DYIID-----TVSAV---HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 249 d~vid-----~~g~~---~~~~~~~~~l~~~G~~v~~ 277 (359)
|.++. .++.. ..+..+.+.|+|+|+++.-
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 87765 33332 3467888999999999853
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=96.85 E-value=0.0016 Score=55.09 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=67.5
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHhcCCc
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAAMGTM 248 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~ 248 (359)
+.....+.+|++||-+|+| .|..+..+++..|++|++++.++...+.+.+ ..|.. .++..+- ..+.--.+.|
T Consensus 59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l~~~~~sf 136 (282)
T d2o57a1 59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIPCEDNSY 136 (282)
T ss_dssp HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCSSCTTCE
T ss_pred HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccc-cccccccccc
Confidence 4555667999999999987 3567778888889999999999987766633 23321 2222211 1111011369
Q ss_pred cEEEECCC-----C-hhhHHHHHhccccCCEEEEec
Q 018246 249 DYIIDTVS-----A-VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 249 d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 278 (359)
|+|+..-. . ...+..+.+.|+|+|+++...
T Consensus 137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99976332 1 135788999999999988764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.79 E-value=0.00065 Score=56.21 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAA-------MGTMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~ 254 (359)
.|+++||.|+ +++|++.++.+...|++|++++++++..+.+ .....|..+.+.++++ .+++|+++++
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn 80 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN 80 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-----EEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc-----eEEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence 6889999986 8999999999999999999999987664322 1233566665544433 2489999999
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
+|.
T Consensus 81 AG~ 83 (237)
T d1uzma1 81 AGL 83 (237)
T ss_dssp CSC
T ss_pred ecc
Confidence 875
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0037 Score=51.68 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=43.6
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD 230 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~ 230 (359)
+|+++||.|+ +++|.+.++.+...|++|+++++++++.+.+.++++..
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~ 52 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN 52 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence 6899999986 99999999999999999999999999998888888754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.00099 Score=54.92 Aligned_cols=92 Identities=13% Similarity=0.192 Sum_probs=65.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC----
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA---- 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~---- 257 (359)
.++.+||-+|+| .|..+..+++ .|++|++++.+++.++.+ ++.+....+..+.. .+.-..+.+|+|+.....
T Consensus 41 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a-~~~~~~~~~~~~~~-~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 41 KNPCRVLDLGGG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVA-REKGVKNVVEAKAE-DLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CSCCEEEEETCT-TCHHHHHHHT-TTCEEEEEESCHHHHHHH-HHHTCSCEEECCTT-SCCSCTTCEEEEEECSSHHHHC
T ss_pred CCCCEEEEECCC-Cchhcccccc-cceEEEEeeccccccccc-cccccccccccccc-ccccccccccceeeecchhhhh
Confidence 577889999987 5888888876 589999999999999988 55554444433221 111112479999865432
Q ss_pred ---hhhHHHHHhccccCCEEEEe
Q 018246 258 ---VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 258 ---~~~~~~~~~~l~~~G~~v~~ 277 (359)
..++..+.+.|+|||.++..
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHHHHHhhcCcCcEEEEE
Confidence 23567888999999998764
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.76 E-value=0.0002 Score=59.34 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=60.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCC--H-------HHHHHhc--CCccEE
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSD--P-------AKVKAAM--GTMDYI 251 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~--~-------~~~~~~~--~~~d~v 251 (359)
+.+|||.|+ +++|.+.++.+...|++|+++++++++... ....+.... . +.+.... +..|++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l 75 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV 75 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc------ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence 346899986 999999999999999999999988654211 111111111 1 1111111 368999
Q ss_pred EECCCCh--------------------------hhHHHHHhccccCCEEEEecCCC
Q 018246 252 IDTVSAV--------------------------HSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 252 id~~g~~--------------------------~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
++++|.. ......+..|+++|+++.++...
T Consensus 76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~ 131 (235)
T d1ooea_ 76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA 131 (235)
T ss_dssp EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHH
Confidence 9998741 12345667788999999997644
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.0012 Score=47.36 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=48.7
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEE-ecCCCHHHHHHhcC--CccEE
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAF-LVSSDPAKVKAAMG--TMDYI 251 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~--~~d~v 251 (359)
+.+|.|+|+|.+|++.++.|+.+|.++++.+.+++.-. .+....++ .++++.+.+.++.. ++|++
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA---~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi 78 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA---MHVAHRSHVINMLDGDALRRVVELEKPHYI 78 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG---GGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch---hhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence 35699999999999999999999999999998765421 23343333 45677777766653 67888
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.74 E-value=0.0014 Score=55.53 Aligned_cols=102 Identities=11% Similarity=0.087 Sum_probs=67.4
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc-EE-ecCCCHHHHHHhcC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD-AF-LVSSDPAKVKAAMG 246 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~-~v-~~~~~~~~~~~~~~ 246 (359)
+..+.....+++|++||-+|+|-=| ++..+++..|++|++++.+++..+.+.++ .|.. .+ +...+. ....+
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~-~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~---~~~~~ 116 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGT-TMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFAE 116 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSH-HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCCC
T ss_pred HHHHHHHcCCCCCCEEEEecCCchH-HHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh---hhhcc
Confidence 3344444556999999999986424 45678888899999999999988777333 3421 11 111111 12345
Q ss_pred CccEEEE-----CCCCh---hhHHHHHhccccCCEEEEe
Q 018246 247 TMDYIID-----TVSAV---HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 247 ~~d~vid-----~~g~~---~~~~~~~~~l~~~G~~v~~ 277 (359)
.+|.|+. .++.. ..+..+.+.|+|+|+++.-
T Consensus 117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence 7888864 33332 3467889999999999863
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.0025 Score=54.15 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=67.2
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHH---HHcCCc-E-EecCCCHHHHHHhcC
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAI---SKLGAD-A-FLVSSDPAKVKAAMG 246 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~---~~~g~~-~-v~~~~~~~~~~~~~~ 246 (359)
+..+.....+++|++||-+|+|- |-.+..+|+..|++|+.++.+++..+.+. ++.|.. . .+...+. ....+
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~ 125 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDE 125 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---ccccc
Confidence 34444455569999999999864 33567888888999999999998766552 334422 1 1111221 12234
Q ss_pred CccEEEE-----CCCC----------hhhHHHHHhccccCCEEEEe
Q 018246 247 TMDYIID-----TVSA----------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 247 ~~d~vid-----~~g~----------~~~~~~~~~~l~~~G~~v~~ 277 (359)
.||.|+. .++. ...+..+.+.|+|+|+++.-
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 7998875 3332 13477899999999999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0016 Score=53.34 Aligned_cols=96 Identities=15% Similarity=0.041 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe------------cCC---------CHH
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL------------VSS---------DPA 239 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~------------~~~---------~~~ 239 (359)
..++.+||..|+|. |..+..+|+ .|++|++++.+++..+.+.++.+..... ... +..
T Consensus 43 ~~~~~rvLd~GCG~-G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGK-AVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTT-CTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCC-cHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 37889999999875 777777776 6999999999999988886655532111 000 000
Q ss_pred HH-HHhcCCccEEEECCCC--------hhhHHHHHhccccCCEEEEec
Q 018246 240 KV-KAAMGTMDYIIDTVSA--------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 240 ~~-~~~~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 278 (359)
.+ ......+|+|+++..- ...+..+.+.|+|+|+++...
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 00 1112368999986532 124578899999999977664
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.71 E-value=0.0063 Score=47.86 Aligned_cols=95 Identities=18% Similarity=0.217 Sum_probs=61.7
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCC-c--EEecCCCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGA-D--AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~-~--~v~~~~~~~~~~~~~~~~d~vid 253 (359)
.+++|++||=+|+|. |..++.+|+. +.+|++++.+++..+.+.+ +.|. + .++.. +......-...+|+|+.
T Consensus 30 ~~~~g~~VLDiGcGs-G~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~g-da~~~~~~~~~~D~v~~ 106 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGT-GGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG-DAPEALCKIPDIDIAVV 106 (186)
T ss_dssp CCCTTCEEEEESCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES-CHHHHHTTSCCEEEEEE
T ss_pred CCCCCCEEEEEECCe-Eccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEEC-chhhcccccCCcCEEEE
Confidence 348999999998643 3344556654 5699999999998777633 4553 2 23322 22222222348999987
Q ss_pred CCCCh---hhHHHHHhccccCCEEEEe
Q 018246 254 TVSAV---HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~~---~~~~~~~~~l~~~G~~v~~ 277 (359)
..+.. ..++.+.+.|+|+|+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 107 GGSGGELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp SCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred eCccccchHHHHHHHHHhCcCCEEEEE
Confidence 65432 3467888999999998765
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.67 E-value=0.0049 Score=47.32 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=65.2
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH--
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP-- 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~-- 263 (359)
+|-|+|.|.+|...+.-+...|.+|++.++++++.+.+ ++.+.... .+ ..+.....|+++-|+........
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~-~~~~~~~~---~~---~~e~~~~~d~ii~~v~~~~~v~~v~ 74 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-IAAGAETA---ST---AKAIAEQCDVIITMLPNSPHVKEVA 74 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC---SS---HHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHH-HHhhhhhc---cc---HHHHHhCCCeEEEEcCCHHHHHHHH
Confidence 47789999999999988888999999999999999888 56665432 11 22333468999999987654444
Q ss_pred -----HHhccccCCEEEEecCCC
Q 018246 264 -----LLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 264 -----~~~~l~~~G~~v~~g~~~ 281 (359)
....++++..+++++...
T Consensus 75 ~~~~~~~~~~~~g~iiid~sT~~ 97 (161)
T d1vpda2 75 LGENGIIEGAKPGTVLIDMSSIA 97 (161)
T ss_dssp HSTTCHHHHCCTTCEEEECSCCC
T ss_pred hCCcchhhccCCCCEEEECCCCC
Confidence 344566777777776544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.0013 Score=54.07 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=64.8
Q ss_pred hHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc--EEecCCCHHHHHHhcCCcc
Q 018246 175 MKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD--AFLVSSDPAKVKAAMGTMD 249 (359)
Q Consensus 175 l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d 249 (359)
+.....++||++||-+|+|. |..+..+++. +.+|++++.+++-++.+.+. .+.. .++..+.. .+.-..+.||
T Consensus 8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD 84 (234)
T d1xxla_ 8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLPFPDDSFD 84 (234)
T ss_dssp HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BCCSCTTCEE
T ss_pred HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccccccc-cccccccccc
Confidence 44455569999999999864 6667777764 68999999999877666332 3322 11211111 1100123699
Q ss_pred EEEECCCC------hhhHHHHHhccccCCEEEEe
Q 018246 250 YIIDTVSA------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 250 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 277 (359)
+|+.+-.- ...+..+.+.|+|+|+++..
T Consensus 85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence 99864432 23578999999999998875
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=96.64 E-value=0.0012 Score=53.90 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=65.1
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEE
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD--AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~v 251 (359)
+...++++++||-+|+| .|..+..+++. |.+|++++.+++-.+.+.+ +.+.. .++..+.. .+.-..+.||+|
T Consensus 9 ~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~-~l~~~~~~fD~v 85 (231)
T d1vl5a_ 9 QIAALKGNEEVLDVATG-GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMPFTDERFHIV 85 (231)
T ss_dssp HHHTCCSCCEEEEETCT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEE
T ss_pred HhcCCCCcCEEEEeccc-CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhcccccccccccccccccc-cccccccccccc
Confidence 34455999999999987 56677777755 7899999999987766632 33432 22222211 111112379999
Q ss_pred EECCC-----Ch-hhHHHHHhccccCCEEEEec
Q 018246 252 IDTVS-----AV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 252 id~~g-----~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
+..-. .. ..+..+.+.|+|||+++..-
T Consensus 86 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 86 TCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 86433 22 35789999999999998763
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0034 Score=54.11 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=64.5
Q ss_pred CCCCCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc---C-----------CcE--EecCCCHHH
Q 018246 179 GMTEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL---G-----------ADA--FLVSSDPAK 240 (359)
Q Consensus 179 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~---g-----------~~~--v~~~~~~~~ 240 (359)
..++||++||=.|+|. |.++..+|+..|. +|+.++.+++..+.+.+.+ + .+. +...+-.+.
T Consensus 94 l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~ 172 (324)
T d2b25a1 94 MDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA 172 (324)
T ss_dssp HTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred hCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence 3459999999999865 7888899998875 8999999999887774322 1 111 111111111
Q ss_pred HHHhc-CCccEEEECCCCh-hhHHHHHhccccCCEEEEec
Q 018246 241 VKAAM-GTMDYIIDTVSAV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 241 ~~~~~-~~~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
..... ..+|.||--...+ ..+..+.+.|+|||+++.+-
T Consensus 173 ~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 173 TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp C-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred ccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 11111 2688887544443 36899999999999998763
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.62 E-value=0.00047 Score=54.32 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=62.2
Q ss_pred hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC----cEE--ecCCCHHHHHHhcC
Q 018246 173 SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA----DAF--LVSSDPAKVKAAMG 246 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~----~~v--~~~~~~~~~~~~~~ 246 (359)
.+++....--+|++|||+|+|+++.+++..+...| +|+++.|+.++.+.+.+++.. ..+ ++.. .+.....
T Consensus 7 ~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 82 (177)
T d1nvta1 7 MALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS---GLDVDLD 82 (177)
T ss_dssp HHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE---CTTCCCT
T ss_pred HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhh---hhhhccc
Confidence 34444332257899999999999998887776555 999999999998777555431 100 0000 0111123
Q ss_pred CccEEEECCCChhhH--H----HHHhccccCCEEEEecCC
Q 018246 247 TMDYIIDTVSAVHSL--A----PLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 247 ~~d~vid~~g~~~~~--~----~~~~~l~~~G~~v~~g~~ 280 (359)
.+|++++|+.....- . .-...+.++..+.++...
T Consensus 83 ~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~ 122 (177)
T d1nvta1 83 GVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYN 122 (177)
T ss_dssp TCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred hhhhhccCCcccccccccccchhhhhccCcccceeeecCC
Confidence 789999998753200 0 112334455566666444
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.61 E-value=0.0019 Score=53.63 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=52.6
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCc---EEecCCCHHHHHHh-------cC--Ccc
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGAD---AFLVSSDPAKVKAA-------MG--TMD 249 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~--~~d 249 (359)
++|||.|+ +++|+++++.+...|+ +|++++|+.++.+.+.+..+.. ..+|-.+.+.++++ .+ +.|
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~id 83 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLS 83 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCeE
Confidence 78999986 9999999988888886 7888999999988884434432 22355555433322 12 589
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
++++++|.
T Consensus 84 ilinnAG~ 91 (250)
T d1yo6a1 84 LLINNAGV 91 (250)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999984
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=96.58 E-value=0.0024 Score=53.21 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCc----EEecCC-CHHHHHHh-------cC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGAD----AFLVSS-DPAKVKAA-------MG 246 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~----~v~~~~-~~~~~~~~-------~~ 246 (359)
.|++|||.|+ +++|++++......|++|++++++.++.+.+ ....+.. ...|.. +.+.++++ .+
T Consensus 4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g 83 (254)
T d1sbya1 4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK 83 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence 5899999986 8999999999999999999998776654433 2223322 222333 32222222 25
Q ss_pred CccEEEECCCCh-----------------hhHHHHHhccc-----cCCEEEEecCCC
Q 018246 247 TMDYIIDTVSAV-----------------HSLAPLLGLLK-----VNGKLVTVGLPE 281 (359)
Q Consensus 247 ~~d~vid~~g~~-----------------~~~~~~~~~l~-----~~G~~v~~g~~~ 281 (359)
++|++++++|.. .....++..|. ++|+++.++...
T Consensus 84 ~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~ 140 (254)
T d1sbya1 84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVT 140 (254)
T ss_dssp CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechh
Confidence 899999999853 11233444452 358898886544
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=96.55 E-value=0.021 Score=42.87 Aligned_cols=93 Identities=15% Similarity=0.273 Sum_probs=67.6
Q ss_pred CEEEEECC-chHHHHHHHHHHHC--CCeEEEEe--CChhhHHHHHHHcCCcEEecCCCH--HHHH---------------
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAF--GLKVTVIS--TSPKKESEAISKLGADAFLVSSDP--AKVK--------------- 242 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~--g~~V~~v~--~~~~~~~~~~~~~g~~~v~~~~~~--~~~~--------------- 242 (359)
++|.|+|+ |.+|.-+.++.++. ..+|++++ ++-+.+....++|....++-.++. +.+.
T Consensus 3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~ 82 (150)
T d1r0ka2 3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD 82 (150)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence 68999997 99999999999987 35887766 444466666688988876544332 1111
Q ss_pred ---Hhc-CCccEEEECCCChhhHHHHHhccccCCEEEEe
Q 018246 243 ---AAM-GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 243 ---~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
++. ..+|+++.+..+...+...+..++.+-++.+.
T Consensus 83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA 121 (150)
T d1r0ka2 83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA 121 (150)
T ss_dssp HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred chheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence 111 26899999987777799999999988876654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.0063 Score=50.98 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=51.6
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChh---hHHHHHHHcCCc--EEecCCCHHHHHH-------hcCC
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPK---KESEAISKLGAD--AFLVSSDPAKVKA-------AMGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~---~~~~~~~~~g~~--~v~~~~~~~~~~~-------~~~~ 247 (359)
+|+++||.|+ | ++|.++++.+...|++|++++++++ +.+.+.++.+.. ...+..+...+.. ..+.
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~ 83 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS 83 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcCC
Confidence 5899999985 5 7999999999999999999999864 333332333322 2334444433222 2358
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
+|+++.+.+.
T Consensus 84 id~lV~nag~ 93 (274)
T d2pd4a1 84 LDFIVHSVAF 93 (274)
T ss_dssp EEEEEECCCC
T ss_pred CCeEEeeccc
Confidence 9999998874
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.51 E-value=0.0034 Score=50.61 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=63.0
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHH---cCC-cEEecC-CCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISK---LGA-DAFLVS-SDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~---~g~-~~v~~~-~~~~~~~~~~~~~d~vid 253 (359)
.++||++||=+|+|. |..+..+++..+. +|++++-+++..+.+.+. .+. ..++.. ............+|+++.
T Consensus 53 ~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 53 KLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence 459999999999864 5567777777754 999999999887766332 332 222211 211111112236788876
Q ss_pred CCCCh----hhHHHHHhccccCCEEEEe
Q 018246 254 TVSAV----HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~~----~~~~~~~~~l~~~G~~v~~ 277 (359)
..... ..+..+.+.|+++|+++.+
T Consensus 132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 132 DIAQKNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccChhhHHHHHHHHHHHhccCCeEEEE
Confidence 54322 2467788999999999876
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0046 Score=48.41 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
...++|+|+|+|+.|+.|+..+...|.+|++..+.+
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 556899999999999999999999999999999765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.41 E-value=0.018 Score=44.61 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=67.9
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEECCCChh---
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAMGTMDYIIDTVSAVH--- 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~~--- 259 (359)
.+|-|+|.|.+|...+.-+...|.+|++.++++++.+.+. +.++. ........+.........|.++-++....
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-ANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-HTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 4688999999999988888889999999999999998884 44421 11112334455556667788887776543
Q ss_pred -hHHHHHhccccCCEEEEecCCC
Q 018246 260 -SLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 260 -~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
..+.+...++++..++.++...
T Consensus 82 ~v~~~l~~~~~~g~iiid~sT~~ 104 (176)
T d2pgda2 82 NFIEKLVPLLDIGDIIIDGGNSE 104 (176)
T ss_dssp HHHHHHHHHCCTTCEEEECSCCC
T ss_pred HHHHHHHhccccCcEEEecCcch
Confidence 2345566677777777776543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.41 E-value=0.0053 Score=49.77 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=52.5
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+|||.|+ |.+|...+..+...|. .|+.+.|++++.... .-+... ..|..+.+...++..++|.|+.+++.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~ 78 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA 78 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc--cCCcEEEEeeeccccccccccccceeeEEEEee
Confidence 58999986 9999999999998886 567778887765544 223333 34556666677777899999998764
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.41 E-value=0.039 Score=42.20 Aligned_cols=132 Identities=12% Similarity=0.123 Sum_probs=82.1
Q ss_pred EEEEECCchHHHH-HHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHV-AVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~-a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|+|.+|.- .+...+.. +.+++++++++++.+.+.++++...+++.-+ +.+ ...+|+|+-|+....-.+.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~ll---~~~iD~V~I~tp~~~H~~~ 78 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYR-DVL---QYGVDAVMIHAATDVHSTL 78 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTT-GGG---GGCCSEEEECSCGGGHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHH-Hhc---ccccceecccccccccccc
Confidence 5789999999964 56666655 4588889999999888878888755432211 111 2379999999887665777
Q ss_pred HHhccccCCEEEEecCCCCCee---eCHHHHH-hcCcEE-EEeecCCHHHHHHHHHHHHhCCCcc
Q 018246 264 LLGLLKVNGKLVTVGLPEKPLE---VPIFALV-GARRLV-GGSNVGGMKETQEMLDFCAKHNIAA 323 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~~~~---~~~~~~~-~k~~~i-~g~~~~~~~~~~~~~~~l~~g~i~~ 323 (359)
+..++..|-. |++.-+-.... ..+..+. .++..+ .++ ......+.++.+.+..|++-.
T Consensus 79 ~~~al~~gk~-V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~-~r~~~~~~~~~~~~~~G~ig~ 141 (167)
T d1xeaa1 79 AAFFLHLGIP-TFVDKPLAASAQECENLYELAEKHHQPLYVGF-NGFDAMVQDWLQVAAAGKLPT 141 (167)
T ss_dssp HHHHHHTTCC-EEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC-GTHHHHHHHHHHHHHHTCCCH
T ss_pred cccccccccc-cccCCCCcCCHHHHHHHHHHHHHcCCEEEEEe-CcCCHHHHHHHHHhhcCCCCc
Confidence 8888887654 55533221111 1122222 233333 343 222345778888888888853
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.39 E-value=0.0045 Score=48.54 Aligned_cols=84 Identities=27% Similarity=0.387 Sum_probs=62.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh-h--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV-H-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~-- 259 (359)
.|++|.|+|.|.+|...+++++.+|++|++.++.+.+ +..... +.+.++....|+|+.++.-. .
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~--------~~~~~~-----~~l~ell~~sDiv~~~~pl~~~t~ 107 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE--------GPWRFT-----NSLEEALREARAAVCALPLNKHTR 107 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC--------SSSCCB-----SCSHHHHTTCSEEEECCCCSTTTT
T ss_pred cCceEEEeccccccccceeeeeccccccccccccccc--------cceeee-----echhhhhhccchhhcccccccccc
Confidence 5889999999999999999999999999999987532 111111 12445667889998877532 1
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...++.|+++..+|.++-
T Consensus 108 ~li~~~~l~~mk~~ailIN~~R 129 (181)
T d1qp8a1 108 GLVKYQHLALMAEDAVFVNVGR 129 (181)
T ss_dssp TCBCHHHHTTSCTTCEEEECSC
T ss_pred cccccceeeeccccceEEeccc
Confidence 12 578899999999998853
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.37 E-value=0.0037 Score=50.55 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=61.0
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCC-cEEecCCCHHHHHHhcCCccEEEECCC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGA-DAFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
++++++||-+|+|. |..+..+++ .|++|++++.+++..+.+.+. .+. ...+..+. ..+..-...+|+|+..-.
T Consensus 35 l~~~~~ILDiGcG~-G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~-~~l~~~~~~fD~I~~~~~ 111 (226)
T d1ve3a1 35 MKKRGKVLDLACGV-GGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDS 111 (226)
T ss_dssp CCSCCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT-TSCCSCTTCEEEEEEESC
T ss_pred cCCCCEEEEECCCc-chhhhhHhh-hhcccccccccccchhhhhhhhcccccccccccccc-ccccccCcCceEEEEecc
Confidence 36788999999875 667777776 488999999999888777432 232 12221111 111111237999886433
Q ss_pred Ch--------hhHHHHHhccccCCEEEEe
Q 018246 257 AV--------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 257 ~~--------~~~~~~~~~l~~~G~~v~~ 277 (359)
-. ..++.+.+.|+|||+++..
T Consensus 112 l~~~~~~d~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 112 IVHFEPLELNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp GGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence 11 2477899999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.0022 Score=52.47 Aligned_cols=95 Identities=18% Similarity=0.060 Sum_probs=62.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC---CcEEecCCCHHH-HHHhc-CCccEEE-ECC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG---ADAFLVSSDPAK-VKAAM-GTMDYII-DTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g---~~~v~~~~~~~~-~~~~~-~~~d~vi-d~~ 255 (359)
.+|.+||-+|+|. |..+..++++.+.+|++++.+++-++.+.+... ....+...+... ...+. +.+|.++ |.+
T Consensus 52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGM-AIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTT-SHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccc-hHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 5788999998764 667788888766799999999998888844432 111111122222 22222 3788884 655
Q ss_pred CCh----------hhHHHHHhccccCCEEEEe
Q 018246 256 SAV----------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 256 g~~----------~~~~~~~~~l~~~G~~v~~ 277 (359)
... ..+..+.+.|+|||+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 332 2456788999999999864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.36 E-value=0.019 Score=43.93 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=65.1
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPL 264 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~ 264 (359)
.+|.++|.|.+|...+.-+...|.+|++.++++++.+.+ ...+..... ...+.....|+++.|+......+..
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~------~~~e~~~~~diii~~v~~~~~~~~v 74 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-VAAGASAAR------SARDAVQGADVVISMLPASQHVEGL 74 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEECS------SHHHHHTSCSEEEECCSCHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhh-hhhhccccc------hhhhhccccCeeeecccchhhHHHH
Confidence 368899999999988888888899999999999998887 666654321 1234445688888888876644443
Q ss_pred -------HhccccCCEEEEecCCC
Q 018246 265 -------LGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 265 -------~~~l~~~G~~v~~g~~~ 281 (359)
...+.++-.+++++...
T Consensus 75 ~~~~~~~~~~l~~g~iiid~st~~ 98 (162)
T d3cuma2 75 YLDDDGLLAHIAPGTLVLECSTIA 98 (162)
T ss_dssp HHSTTCHHHHSCTTCEEEECSCCC
T ss_pred HhccccccccCCCCCEEEECCCCC
Confidence 33466666777775544
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.34 E-value=0.018 Score=44.50 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=65.4
Q ss_pred EEEEECCchHHHHHHHHHHHCC-CeEEEE-eCChhhHHHHHHHcCCcEEecCCCH-H-----------HHHHhcCCccEE
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVI-STSPKKESEAISKLGADAFLVSSDP-A-----------KVKAAMGTMDYI 251 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-~~V~~v-~~~~~~~~~~~~~~g~~~v~~~~~~-~-----------~~~~~~~~~d~v 251 (359)
+|.|.|.|-+|+..++.+.... .+++.+ +.++........+++.+......+. . .+..+..++|+|
T Consensus 4 rIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDvV 83 (172)
T d2czca2 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCEE
Confidence 6889999999999888887654 465554 3444433333356665543322111 1 122223489999
Q ss_pred EECCCChhhHHHHHhccccCCEEEEecCCCC
Q 018246 252 IDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 252 id~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
+||+|.-.+.+.+-.++..|-+.|..+.+..
T Consensus 84 iEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~ 114 (172)
T d2czca2 84 VDATPGGIGAKNKPLYEKAGVKAIFQGGEKA 114 (172)
T ss_dssp EECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred EECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence 9999987778888899999999999887653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.32 E-value=0.0086 Score=48.84 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHc---CC-cEEec-CCCHHHHHHhcCCccEEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKL---GA-DAFLV-SSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~---g~-~~v~~-~~~~~~~~~~~~~~d~vid 253 (359)
.++||++||-+|+|. |..+..+|+... .+|++++-++...+.+.+.. +. ..++. .............+|+++.
T Consensus 71 ~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~ 149 (230)
T d1g8sa_ 71 PIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE 149 (230)
T ss_dssp CCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeec
Confidence 359999999999854 666777777653 49999999998888774432 21 22221 1222211122235666766
Q ss_pred CCCCh----hhHHHHHhccccCCEEEEe
Q 018246 254 TVSAV----HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 ~~g~~----~~~~~~~~~l~~~G~~v~~ 277 (359)
..... ..+..+.+.|+|+|+++.+
T Consensus 150 ~~~~~~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 150 DVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchHHHHHHHHHHHHhcccCceEEEE
Confidence 55432 2467888899999998875
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.28 E-value=0.0075 Score=48.01 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=74.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|.+|+|.|.|.+|..+++++...|++|++.+.+.++.+.. ..+|.+.+- .+ +-+....|+.+=|..+...-
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~-~~~g~~~~~-~~-----~~~~~~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAVA-LE-----DVLSTPCDVFAPCAMGGVIT 97 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEECC-GG-----GGGGCCCSEEEECSCSCCBC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH-HhhcccccC-cc-----ccccccceeeeccccccccc
Confidence 378999999999999999999999999999999999998887 677776531 11 11234789998777655533
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeC-HH-HHHhcCcEEEE
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVP-IF-ALVGARRLVGG 300 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~-~~-~~~~k~~~i~g 300 (359)
....+.++ -++| ++....+...+ .. .+..|++.+.+
T Consensus 98 ~~~a~~i~--ak~i-~e~AN~p~~~~~~~~~L~~rgI~~iP 135 (201)
T d1c1da1 98 TEVARTLD--CSVV-AGAANNVIADEAASDILHARGILYAP 135 (201)
T ss_dssp HHHHHHCC--CSEE-CCSCTTCBCSHHHHHHHHHTTCEECC
T ss_pred HHHHhhhh--hhee-eccCCCCcchhhHHHHhcccceEEEe
Confidence 45555554 3444 33333333322 22 34567777765
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=96.27 E-value=0.0044 Score=49.15 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=62.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh-h-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV-H- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~- 259 (359)
-.|++|.|+|.|.+|...+++++.+|++|++.++....... ...+...+ . .+.++....|+|.-+.... .
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~~~~~~~---~---~l~~ll~~sD~i~~~~plt~~T 118 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--RALGLQRV---S---TLQDLLFHSDCVTLHCGLNEHN 118 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--HHHTCEEC---S---SHHHHHHHCSEEEECCCCCTTC
T ss_pred eeCceEEEeccccccccceeeeeccccceeeccCcccccch--hhhccccc---c---chhhccccCCEEEEeecccccc
Confidence 36889999999999999999999999999999976544222 23343322 1 2334444578887766522 1
Q ss_pred --hH-HHHHhccccCCEEEEecC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...++.|+++..+|.++-
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sR 141 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTAR 141 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSC
T ss_pred hhhhhHHHHhccCCCCeEEecCC
Confidence 12 467888899888888754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0074 Score=53.47 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=68.7
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHH----------cC----CcEEecC-
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISK----------LG----ADAFLVS- 235 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~----------~g----~~~v~~~- 235 (359)
...+.... +++|+++|-+|+|. |..+.++|+..|+ +|++++.++...+.+.+. +| .......
T Consensus 206 ~~Il~~l~-Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 206 SDVYQQCQ-LKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhC-CCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 44455554 49999999999874 8889999999987 899999998876666221 11 1111111
Q ss_pred --CCHHHHHHhcCCccEEEECCC--C---hhhHHHHHhccccCCEEEEec
Q 018246 236 --SDPAKVKAAMGTMDYIIDTVS--A---VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 236 --~~~~~~~~~~~~~d~vid~~g--~---~~~~~~~~~~l~~~G~~v~~g 278 (359)
...+........+|+++...- . ...+...++.|+|||++|..-
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred chhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 112333344456788875321 1 124678889999999999863
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.00069 Score=52.43 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=57.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC-----cEEecCCCHHHHHHhcCCccEEEECCCChh-
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA-----DAFLVSSDPAKVKAAMGTMDYIIDTVSAVH- 259 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 259 (359)
+|+|+|+|.+|.+.+..+...|.+|.++++++++.+.. +..+. ...+.....+ ..+.+|++|-++....
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~D~iii~vka~~~ 76 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDPD----FLATSDLLLVTLKAWQV 76 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCHH----HHHTCSEEEECSCGGGH
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-ccccCCccccccccccchhh----hhcccceEEEeecccch
Confidence 68999999999998888888999999999988754433 22221 1111122222 2247999999998765
Q ss_pred --hHHHHHhccccCCEEEEe
Q 018246 260 --SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 260 --~~~~~~~~l~~~G~~v~~ 277 (359)
.++.+...+.++..++.+
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHhhccccCcccEEeec
Confidence 223344455666667766
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.15 E-value=0.0058 Score=48.57 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh-h--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV-H-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~-- 259 (359)
.|++|.|+|.|.+|...+++++.+|++|++.++....... ..+.. .. .+.++....|+++.++... .
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~---~~~~~----~~---~l~~~l~~sDii~~~~plt~~T~ 111 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE---KKGYY----VD---SLDDLYKQADVISLHVPDVPANV 111 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HTTCB----CS---CHHHHHHHCSEEEECSCCCGGGT
T ss_pred cCCeEEEecccccchhHHHhHhhhcccccccCcccccccc---cceee----ec---cccccccccccccccCCcccccc
Confidence 5889999999999999999999999999999876543222 22211 11 2334444679988876522 1
Q ss_pred -hH-HHHHhccccCCEEEEecC
Q 018246 260 -SL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 -~~-~~~~~~l~~~G~~v~~g~ 279 (359)
.+ ...++.|+++..+|.++-
T Consensus 112 ~li~~~~l~~mk~~a~lIN~sR 133 (197)
T d1j4aa1 112 HMINDESIAKMKQDVVIVNVSR 133 (197)
T ss_dssp TCBSHHHHHHSCTTEEEEECSC
T ss_pred ccccHHHHhhhCCccEEEecCc
Confidence 12 567888888888888743
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=96.13 E-value=0.011 Score=49.23 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChhhH-HHHHHHcCCc---EEecCCCHHH-------HHHhc---
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPKKE-SEAISKLGAD---AFLVSSDPAK-------VKAAM--- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~~~-~~~~~~~g~~---~v~~~~~~~~-------~~~~~--- 245 (359)
.|+++||.|+ | ++|+++++.+...|++|++++++.++. +.+.++++.+ ...|..+.+. +.+..
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~~ 84 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG 84 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccccC
Confidence 6889999984 4 699999999999999999999988876 3344556632 2334444422 22221
Q ss_pred CCccEEEECCC
Q 018246 246 GTMDYIIDTVS 256 (359)
Q Consensus 246 ~~~d~vid~~g 256 (359)
+..|+++++.+
T Consensus 85 ~~ld~~i~~ag 95 (268)
T d2h7ma1 85 NKLDGVVHSIG 95 (268)
T ss_dssp CCEEEEEECCC
T ss_pred CCcceeeeccc
Confidence 36899999887
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0051 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~ 215 (359)
.|++|||+|+|.+|+.-+..+...|++|++++.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 688999999999999999999999999999964
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.11 E-value=0.0083 Score=47.13 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=64.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC-hh-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA-VH- 259 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-~~- 259 (359)
-.|.++.|+|.|.+|...+++++.+|.+|++.++........ ..+... . .+.++....|+|.-++.- +.
T Consensus 42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~~~~~~----~---~l~ell~~sDiv~~~~Plt~~T 112 (184)
T d1ygya1 42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--QLGIEL----L---SLDDLLARADFISVHLPKTPET 112 (184)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--HHTCEE----C---CHHHHHHHCSEEEECCCCSTTT
T ss_pred ccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh--hcCcee----c---cHHHHHhhCCEEEEcCCCCchh
Confidence 468899999999999999999999999999999876553333 344332 1 133444567999876652 21
Q ss_pred --hH-HHHHhccccCCEEEEecCC
Q 018246 260 --SL-APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 --~~-~~~~~~l~~~G~~v~~g~~ 280 (359)
.+ ...++.|+++..+|.++-.
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG 136 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARG 136 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCT
T ss_pred hhhhhHHHHhhhCCCceEEEecch
Confidence 12 4788899999998888543
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.011 Score=49.97 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=58.6
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEE---eCChh---hHHHHHHHcC---Cc---EEecCCCHHHHHHhc-----CC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVI---STSPK---KESEAISKLG---AD---AFLVSSDPAKVKAAM-----GT 247 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v---~~~~~---~~~~~~~~~g---~~---~v~~~~~~~~~~~~~-----~~ 247 (359)
.|||.|+ +++|++.+..+...|++|+.+ .++.+ ++.+..+++. .. ...|-.+.+.+..+. +.
T Consensus 4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~ 83 (285)
T d1jtva_ 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR 83 (285)
T ss_dssp EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence 4567786 999999999999899875544 44433 3333334432 22 234566655544432 47
Q ss_pred ccEEEECCCCh-------------------------hhHHHHHhcc--ccCCEEEEecCCC
Q 018246 248 MDYIIDTVSAV-------------------------HSLAPLLGLL--KVNGKLVTVGLPE 281 (359)
Q Consensus 248 ~d~vid~~g~~-------------------------~~~~~~~~~l--~~~G~~v~~g~~~ 281 (359)
.|+++++.|.. ...+.++..| +.+|++|.+++..
T Consensus 84 idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~ 144 (285)
T d1jtva_ 84 VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVG 144 (285)
T ss_dssp CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGG
T ss_pred hhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechh
Confidence 99999988753 1223445555 3368999987543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.02 Score=43.68 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=74.1
Q ss_pred ccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHH
Q 018246 162 APLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAK 240 (359)
Q Consensus 162 a~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~ 240 (359)
..+||+....+..++....--.|++|+|+|- ..+|.-.+.++...|++|++..+....+...
T Consensus 15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~----------------- 77 (166)
T d1b0aa1 15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH----------------- 77 (166)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH-----------------
T ss_pred CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHH-----------------
Confidence 4677777777777877766568999999996 6899999999999999999887654333222
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
....|+++-++|.+..+. -..++++..++++|..
T Consensus 78 ----~~~ADivI~a~G~p~~i~--~~~vk~g~vvIDvGi~ 111 (166)
T d1b0aa1 78 ----VENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN 111 (166)
T ss_dssp ----HHHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred ----HhhhhHhhhhccCccccc--ccccCCCcEEEecCce
Confidence 234799999999887443 3578899999999874
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=95.96 E-value=0.017 Score=47.72 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=53.1
Q ss_pred CCCCCCEEEEECC-chHHHHHHHHHHHCCC-eEEEEeCChh---hHHHHH---HHcCCcE---EecCCCHHHHHHhc---
Q 018246 180 MTEPGKHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISTSPK---KESEAI---SKLGADA---FLVSSDPAKVKAAM--- 245 (359)
Q Consensus 180 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~-~V~~v~~~~~---~~~~~~---~~~g~~~---v~~~~~~~~~~~~~--- 245 (359)
.++|+.++||.|+ |++|++.+..+.+.|+ +|+++.|++. ..+.+. +..|.+. ..|-.+.+.+..+.
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i 84 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 84 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence 4689999999986 9999999988888899 5888877642 222221 4456532 23556655544442
Q ss_pred ---CCccEEEECCCC
Q 018246 246 ---GTMDYIIDTVSA 257 (359)
Q Consensus 246 ---~~~d~vid~~g~ 257 (359)
...|.++.+.|.
T Consensus 85 ~~~~~i~~vv~~ag~ 99 (259)
T d2fr1a1 85 GDDVPLSAVFHAAAT 99 (259)
T ss_dssp CTTSCEEEEEECCCC
T ss_pred ccccccccccccccc
Confidence 268899998874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.92 E-value=0.013 Score=46.15 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=64.0
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh----
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV---- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---- 258 (359)
.+.+|.|+|.|.+|...+++++.+|.+|...++........ +..+.... ..+.++....|+|.-+..-.
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~~~------~~l~~~l~~sD~v~~~~plt~~T~ 115 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTWH------ATREDMYPVCDVVTLNCPLHPETE 115 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEEC------SSHHHHGGGCSEEEECSCCCTTTT
T ss_pred cccceeeccccccchhhhhhhhccCceEEEEeecccccccc-cccccccc------CCHHHHHHhccchhhcccccccch
Confidence 68899999999999999999999999999999765444333 34443221 12344556788887766522
Q ss_pred h-hHHHHHhccccCCEEEEecC
Q 018246 259 H-SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~-~~~~~~~~l~~~G~~v~~g~ 279 (359)
. .=...++.|+++..+|.++-
T Consensus 116 ~li~~~~l~~mk~ga~lIN~aR 137 (188)
T d2naca1 116 HMINDETLKLFKRGAYIVNTAR 137 (188)
T ss_dssp TCBSHHHHTTSCTTEEEEECSC
T ss_pred hhhHHHHHHhCCCCCEEEecCc
Confidence 1 12577888888888888743
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=95.92 E-value=0.0078 Score=47.74 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=61.4
Q ss_pred cCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHH---HHcCCcEE-ecCCCHHHHHHhcCCccEEEE
Q 018246 178 YGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAI---SKLGADAF-LVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 178 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~---~~~g~~~v-~~~~~~~~~~~~~~~~d~vid 253 (359)
...+++| +||-+|+| .|..+..+++ .|.+|++++.+++-++.+. +..+.+.+ +...+.... ...+.||+|+.
T Consensus 26 ~~~~~~g-rvLDiGcG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~I~~ 101 (198)
T d2i6ga1 26 AKVVAPG-RTLDLGCG-NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-TFDGEYDFILS 101 (198)
T ss_dssp HTTSCSC-EEEEETCT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-CCCCCEEEEEE
T ss_pred cccCCCC-cEEEECCC-CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-cccccccEEEE
Confidence 3444565 89999987 6777777776 5899999999998776652 23343321 111111000 11247999986
Q ss_pred CCCC-----h---hhHHHHHhccccCCEEEEec
Q 018246 254 TVSA-----V---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 254 ~~g~-----~---~~~~~~~~~l~~~G~~v~~g 278 (359)
..-- . ..++.+.++|+++|.++...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3321 1 25678888999999988764
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.89 E-value=0.023 Score=44.16 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=62.1
Q ss_pred EEEEECCchHHHHHHHHHHHCC-CeEEEEe-CChhhHHHHHHHcCCcEEecCCCHHH-----------HHHhcCCccEEE
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVIS-TSPKKESEAISKLGADAFLVSSDPAK-----------VKAAMGTMDYII 252 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-~~V~~v~-~~~~~~~~~~~~~g~~~v~~~~~~~~-----------~~~~~~~~d~vi 252 (359)
+|.|.|.|-+|+..++.+.... .+++++. ..+..........+.......+.... +.++..++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 5889999999999999998764 4777754 44333333324445433322222111 112223689999
Q ss_pred ECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 253 DTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 253 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
||+|.-...+.+-.+++.+-+++..+...
T Consensus 83 ecTG~f~~~e~a~~hl~~G~KvIi~~~~~ 111 (178)
T d1b7go1 83 DTTPNGVGAQYKPIYLQLQRNAIFQGGEK 111 (178)
T ss_dssp ECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred ECCCCcCCHHHHHHHHHcCCEEEEECCCC
Confidence 99998766778888888887888776543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.86 E-value=0.011 Score=46.72 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=62.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC-h---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA-V--- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-~--- 258 (359)
.|.++.|+|.|.+|...+++++..|.+|++.++........ ...+... .. .+.++....|+|..+..- +
T Consensus 46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~~---~~---~l~~ll~~sD~v~l~~plt~~T~ 118 (191)
T d1gdha1 46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-ASYQATF---HD---SLDSLLSVSQFFSLNAPSTPETR 118 (191)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-HHHTCEE---CS---SHHHHHHHCSEEEECCCCCTTTT
T ss_pred cccceEEeecccchHHHHHHHHhhccccccccccccccchh-hcccccc---cC---CHHHHHhhCCeEEecCCCCchHh
Confidence 48999999999999999999999999999999765543333 2222211 11 133444457888876642 2
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...++.|+++..+|.++-
T Consensus 119 ~li~~~~l~~mk~~a~lIN~sR 140 (191)
T d1gdha1 119 YFFNKATIKSLPQGAIVVNTAR 140 (191)
T ss_dssp TCBSHHHHTTSCTTEEEEECSC
T ss_pred heecHHHhhCcCCccEEEecCC
Confidence 112 478889999998888754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0038 Score=41.33 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.6
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKK 219 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~ 219 (359)
++|.|+|+|.+|++.++.++.+|.++.+.+..++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 47899999999999999999999999999976544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.089 Score=39.37 Aligned_cols=93 Identities=22% Similarity=0.137 Sum_probs=63.7
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVH 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~ 259 (359)
++++|+|.|.+|..+++.+...|.+|++++.++++.....++ .|...+. |..+++.++++. ...|.++-+.+...
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 579999999999999999999999999999888654333233 3454443 334556665554 48999999888754
Q ss_pred ---hHHHHHhccccCCEEEEe
Q 018246 260 ---SLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 260 ---~~~~~~~~l~~~G~~v~~ 277 (359)
......+.+.+.-+++..
T Consensus 84 ~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 84 DNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp HHHHHHHHHHHHTSSSCEEEE
T ss_pred HHHHHHHHHHHhCCCCceEEE
Confidence 112334455666666654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0065 Score=50.85 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
.++.+||-+|+|. |..+..+++.. +.++++++.+++.++.+.+....-..+..+.. .+.-..+.+|+|+....-..
T Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~-~l~~~~~sfD~v~~~~~~~~- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSH-RLPFSDTSMDAIIRIYAPCK- 159 (268)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTT-SCSBCTTCEEEEEEESCCCC-
T ss_pred CCCCEEEEeCCCC-cHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehh-hccCCCCCEEEEeecCCHHH-
Confidence 5778899998754 55666777765 67999999999998888555442222211111 11111236999997655444
Q ss_pred HHHHHhccccCCEEEEec
Q 018246 261 LAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g 278 (359)
+..+.+.|+|+|.++...
T Consensus 160 ~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 160 AEELARVVKPGGWVITAT 177 (268)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhCCCcEEEEEe
Confidence 889999999999998874
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.70 E-value=0.0049 Score=48.74 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=58.3
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC--c----EEecCCC---HHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA--D----AFLVSSD---PAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~--~----~v~~~~~---~~~~~~~~~~~d~vid~~ 255 (359)
.+|.|+|+|..|.+.+.++...|.+|.+.+++++..+.+. +-+. . ..+ .++ ...+.++..+.|+++-++
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~-~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~iiiav 85 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVN-EKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEIILFVI 85 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHH-HHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHh-hccccccccccccc-ccccccchhhhhccCCCCEEEEcC
Confidence 3699999999999999999888889999999999888773 3221 1 001 000 022455556889999999
Q ss_pred CChhhHHHHHhccc
Q 018246 256 SAVHSLAPLLGLLK 269 (359)
Q Consensus 256 g~~~~~~~~~~~l~ 269 (359)
.... ++..++.++
T Consensus 86 Ps~~-~~~~~~~~~ 98 (189)
T d1n1ea2 86 PTQF-LRGFFEKSG 98 (189)
T ss_dssp CHHH-HHHHHHHHC
T ss_pred cHHH-HHHHHHHHH
Confidence 9876 666666554
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=95.66 E-value=0.0093 Score=51.64 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=54.0
Q ss_pred CCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH----cCCc--EEe--cCCCHHHHHHhcCCccE
Q 018246 180 MTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK----LGAD--AFL--VSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 180 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~----~g~~--~v~--~~~~~~~~~~~~~~~d~ 250 (359)
.+.+|++|||+|+ |-+|...+..+...|.+|++++|+.++.+.+.+. .... ..+ |..+...+.++..++|.
T Consensus 7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (342)
T d1y1pa1 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence 3578999999986 9999999998888899999999988776554221 1111 122 22333334445568999
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
++.+...
T Consensus 87 v~~~a~~ 93 (342)
T d1y1pa1 87 VAHIASV 93 (342)
T ss_dssp EEECCCC
T ss_pred hhhhccc
Confidence 9987764
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.011 Score=49.02 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCEEEEECC-chHHHHHHH-HHH--HCCCeEEEEeCChhhHHHHHHHcC-----Cc---EEecCCCHHHHHHhc-----
Q 018246 183 PGKHLGVAGL-GGLGHVAVK-IGK--AFGLKVTVISTSPKKESEAISKLG-----AD---AFLVSSDPAKVKAAM----- 245 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~-la~--~~g~~V~~v~~~~~~~~~~~~~~g-----~~---~v~~~~~~~~~~~~~----- 245 (359)
.|+.+||.|+ +++|+++++ ||+ ..|++|+++++++++++.+.+++. .+ ...|-.+.+.+.++.
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~ 84 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE 84 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4677788886 899998766 455 368999999999998877755432 21 123555554433331
Q ss_pred ------CCccEEEECCC
Q 018246 246 ------GTMDYIIDTVS 256 (359)
Q Consensus 246 ------~~~d~vid~~g 256 (359)
...|+++++.|
T Consensus 85 ~~~~~~~~~~~lvnnag 101 (259)
T d1oaaa_ 85 LPRPEGLQRLLLINNAA 101 (259)
T ss_dssp SCCCTTCCEEEEEECCC
T ss_pred hhhhccCceEEEEeccc
Confidence 15678888765
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.094 Score=39.20 Aligned_cols=92 Identities=11% Similarity=0.253 Sum_probs=67.0
Q ss_pred EEEEECC-chHHHHHHHHHHHCC--CeEEEEe--CChhhHHHHHHHcCCcEEecCCCHH---------------------
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFG--LKVTVIS--TSPKKESEAISKLGADAFLVSSDPA--------------------- 239 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g--~~V~~v~--~~~~~~~~~~~~~g~~~v~~~~~~~--------------------- 239 (359)
+|.|+|+ |.+|.-+..+.++.- .+|.++. ++-+.+...+++|....++-.++..
T Consensus 3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g~ 82 (151)
T d1q0qa2 3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQ 82 (151)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEESH
T ss_pred eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccCh
Confidence 6899997 999999999999873 4777765 4445666666889988776544321
Q ss_pred -HHHHhc--CCccEEEECCCChhhHHHHHhccccCCEEEEe
Q 018246 240 -KVKAAM--GTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 240 -~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
.+.++. ..+|+|+.+..+...+...+..++.+-++.+.
T Consensus 83 ~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA 123 (151)
T d1q0qa2 83 QAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA 123 (151)
T ss_dssp HHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence 111111 26899999888877799999999888776554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.58 E-value=0.02 Score=46.89 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-EEecCCCHHHHHHhcCCccEEEECCC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-AFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
.++.++||-+|+|. |..+..+++ .|++|++++.+++-++.+.++. +.. .++..+ ...+ ...+.+|+|+...+
T Consensus 39 ~~~~~~iLDiGcGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d-~~~l-~~~~~fD~I~~~~~ 114 (251)
T d1wzna1 39 KREVRRVLDLACGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGD-VLEI-AFKNEFDAVTMFFS 114 (251)
T ss_dssp SSCCCEEEEETCTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESC-GGGC-CCCSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCC-Cccchhhcc-cceEEEEEeeccccccccccccccccccchheehh-hhhc-ccccccchHhhhhh
Confidence 36778999999875 777777776 5889999999998877774432 221 222222 1111 11247999987543
Q ss_pred Ch---------hhHHHHHhccccCCEEEE
Q 018246 257 AV---------HSLAPLLGLLKVNGKLVT 276 (359)
Q Consensus 257 ~~---------~~~~~~~~~l~~~G~~v~ 276 (359)
.- ..+..+.++|+|+|.++.
T Consensus 115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 115 TIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 21 246789999999999876
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.58 E-value=0.009 Score=49.30 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=47.9
Q ss_pred CEEEEECC-chHHHHHHHHHH---HCCCeEEEEeCChhhHHHHH---HHcCCc--EEecCCCHHHHH----H---hc--C
Q 018246 185 KHLGVAGL-GGLGHVAVKIGK---AFGLKVTVISTSPKKESEAI---SKLGAD--AFLVSSDPAKVK----A---AM--G 246 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~---~~g~~V~~v~~~~~~~~~~~---~~~g~~--~v~~~~~~~~~~----~---~~--~ 246 (359)
++|||.|+ +++|+++++.+. +.|++|++++|++++.+.+. ++.+.- ..+|..+.+.++ . .. +
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~ 82 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ 82 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence 57999986 999999886553 45889999999998766552 222211 223444443222 2 22 3
Q ss_pred CccEEEECCCC
Q 018246 247 TMDYIIDTVSA 257 (359)
Q Consensus 247 ~~d~vid~~g~ 257 (359)
.+|+++++.|.
T Consensus 83 ~iDiLvnNAg~ 93 (248)
T d1snya_ 83 GLNVLFNNAGI 93 (248)
T ss_dssp CCSEEEECCCC
T ss_pred CcceEEeeccc
Confidence 79999998874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.52 E-value=0.017 Score=48.84 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=59.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc---CCc-----EEecCCCHHHHH-Hh--cCCccE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL---GAD-----AFLVSSDPAKVK-AA--MGTMDY 250 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~---g~~-----~v~~~~~~~~~~-~~--~~~~d~ 250 (359)
+++.+||-+|+|. |..+..+++. |++|++++.+++-++.+.++. +.. ..+..-+..... .. ...+|.
T Consensus 55 ~~~~~vLD~GcG~-G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 55 HGCHRVLDVACGT-GVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TTCCEEEESSCTT-SHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred cCCCEEEEecCCC-cHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 4677899988764 6677777765 899999999998777663321 111 111111111111 11 237999
Q ss_pred EEECCCC--------------hhhHHHHHhccccCCEEEE
Q 018246 251 IIDTVSA--------------VHSLAPLLGLLKVNGKLVT 276 (359)
Q Consensus 251 vid~~g~--------------~~~~~~~~~~l~~~G~~v~ 276 (359)
|+..... ..++..+.+.|+|||.++.
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 172 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence 9864321 1257899999999999886
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0048 Score=50.43 Aligned_cols=74 Identities=20% Similarity=0.141 Sum_probs=50.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECCCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+.+|||.|+ |.+|...++.+...|. +|++++|++.....- ..-.... +.|..+.+.+.....++|+++.+++.
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~-~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~ 90 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 90 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-GGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc-ccceeeeeeecccccccccccccccccccccccc
Confidence 3468999987 9999999998877775 899999876543221 1111222 23444444455555689999999885
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.42 E-value=0.0068 Score=47.67 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK 218 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~ 218 (359)
+++|+|+|+|+.|+.++..++..|+ .|+++.+++.
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 5789999999999999999999999 5999997764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.016 Score=45.73 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=35.4
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHH
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~ 223 (359)
++|.|+|+|.+|...++++...|.+|++.+++++.++.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a 43 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS 43 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence 579999999999999999999999999999999876655
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.061 Score=41.15 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=75.2
Q ss_pred cccccchhhhhhhHhHhcCCCCCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH
Q 018246 161 GAPLLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA 239 (359)
Q Consensus 161 aa~l~~~~~ta~~~l~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~ 239 (359)
-+.+||+....+..+++.+---.|++|+|+|. ..+|.-++.++...|++|+...+......
T Consensus 16 ~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~------------------ 77 (170)
T d1a4ia1 16 DCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD------------------ 77 (170)
T ss_dssp SCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH------------------
T ss_pred CCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH------------------
Confidence 35678888887878877766568999999996 78999999999999999999886543332
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCC
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+.....|+++-++|.+..+. -..++++-.++++|..
T Consensus 78 ---~~~~~aDivi~a~G~~~~i~--~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 78 ---EEVNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGIN 113 (170)
T ss_dssp ---HHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCB
T ss_pred ---HHHhhccchhhccccccccc--cccccCCCeEeccCcc
Confidence 22345789999999877443 4588999999999864
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.32 E-value=0.33 Score=35.95 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=49.7
Q ss_pred CEEEEEC-CchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHH----HHHHhcC---CccEEEECCC
Q 018246 185 KHLGVAG-LGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPA----KVKAAMG---TMDYIIDTVS 256 (359)
Q Consensus 185 ~~VlI~G-~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~~~~---~~d~vid~~g 256 (359)
++|.|+| .|.+|...+..++..|..|.+.+++++..... ..-+++.++...... .+.++.. .=.+++|+.+
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S 88 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES-ILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS 88 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH-HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch-hhhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence 5799999 69999999999999999999999988765554 344556555444332 1222221 2246667666
Q ss_pred Chh
Q 018246 257 AVH 259 (359)
Q Consensus 257 ~~~ 259 (359)
...
T Consensus 89 vk~ 91 (152)
T d2pv7a2 89 VKR 91 (152)
T ss_dssp CCH
T ss_pred cCH
Confidence 543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.31 E-value=0.066 Score=36.78 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=51.0
Q ss_pred CCCCCEEEEECCchHHHHH-HHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 181 TEPGKHLGVAGLGGLGHVA-VKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a-~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
++..+++-++|.|++|..+ +++++..|..|...|......-..+++.|...... .+.+. ..+.|+|+-+.+-
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g-~~~~~----i~~~d~vV~S~AI 77 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIG-HAEEH----IEGASVVVVSSAI 77 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEES-CCGGG----GTTCSEEEECTTS
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEEC-Ccccc----CCCCCEEEECCCc
Confidence 4677889999999899776 89999999999999987554333336788764443 33322 2467888876553
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.032 Score=45.95 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=49.5
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCcEEe--cCCCHHHHHH----h---cCC
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGADAFL--VSSDPAKVKA----A---MGT 247 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~~v~--~~~~~~~~~~----~---~~~ 247 (359)
.|+++||.|+ | ++|.+++..+...|++|++++++++..+.+ ....+....+ +..+...+.. . .+.
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK 83 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence 6899999986 5 689999999999999999999987654433 2334432222 2233222222 1 247
Q ss_pred ccEEEECCCC
Q 018246 248 MDYIIDTVSA 257 (359)
Q Consensus 248 ~d~vid~~g~ 257 (359)
.|+.+++++.
T Consensus 84 ~d~~v~~a~~ 93 (258)
T d1qsga_ 84 FDGFVHSIGF 93 (258)
T ss_dssp EEEEEECCCC
T ss_pred cceEEEeecc
Confidence 8999988754
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.25 E-value=0.021 Score=41.11 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=37.2
Q ss_pred hHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 173 SPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 173 ~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
..+..... .++++|+|.|+|.+|+=.+..++..|.+|.++.+.+.
T Consensus 12 ~~~~~l~~-~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 12 TLVEELDY-EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp HHHHHCCS-CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred HHHHHHhh-CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 33344443 7889999999999999999999999999999998753
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.24 E-value=0.17 Score=38.73 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=63.1
Q ss_pred EEEEECCchHHHHHHHHHHHCC-CeEEEEe-CChh-hHHHHHHHcCCcEEecCCCHH------------HHHHhcCCccE
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVIS-TSPK-KESEAISKLGADAFLVSSDPA------------KVKAAMGTMDY 250 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-~~V~~v~-~~~~-~~~~~~~~~g~~~v~~~~~~~------------~~~~~~~~~d~ 250 (359)
+|.|.|-|-+|+.+.+++...+ .+++++. .++. ....+ .+++.+......+.. .+.++..++|+
T Consensus 3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171)
T d1cf2o1 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMA-LKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHH-HHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHH-HhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence 6889999999999999887665 4666544 3333 33344 456655433222211 11222248999
Q ss_pred EEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 251 IIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 251 vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
|+||+|.-...+.+-..+..+-+.|..+...
T Consensus 82 ViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~ 112 (171)
T d1cf2o1 82 VIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK 112 (171)
T ss_dssp EEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred EEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 9999998766777888898888888876654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.22 E-value=0.011 Score=48.70 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
..++|+|+|+|+.|++++..++..|.+|+++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35789999999999999999999999999999764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.19 E-value=0.006 Score=48.61 Aligned_cols=86 Identities=23% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC-hh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA-VH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-~~-- 259 (359)
.|++|.|+|.|.+|..++++++.+|++|++.++...... .... ...+ +.++....|++.-++.. +.
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~----~~~~---l~~l~~~~D~v~~~~plt~~T~ 112 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDF----DYVS---LEDLFKQSDVIDLHVPGIEQNT 112 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTC----EECC---HHHHHHHCSEEEECCCCCGGGT
T ss_pred cceeeeeeecccccccccccccccceeeeccCCccchhh----hcch----hHHH---HHHHHHhcccceeeeccccccc
Confidence 578999999999999999999999999999997654311 1111 1112 33444457888776643 22
Q ss_pred --hHHHHHhccccCCEEEEecC
Q 018246 260 --SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 260 --~~~~~~~~l~~~G~~v~~g~ 279 (359)
.=...++.|+++..+|.++-
T Consensus 113 ~li~~~~l~~mk~~a~lIN~aR 134 (199)
T d1dxya1 113 HIINEAAFNLMKPGAIVINTAR 134 (199)
T ss_dssp TSBCHHHHHHSCTTEEEEECSC
T ss_pred ccccHHHhhccCCceEEEeccc
Confidence 12467888999998888854
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.19 E-value=0.039 Score=45.51 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=46.8
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhH-HHHHH----HcCCcEEec---C---CC-HHHHHH-------hc
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKE-SEAIS----KLGADAFLV---S---SD-PAKVKA-------AM 245 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~-~~~~~----~~g~~~v~~---~---~~-~~~~~~-------~~ 245 (359)
+.||.|+ +++|.+++..+...|++|++++++.++. +.+.+ ..+.+.+.. . .. .+.+.+ ..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF 82 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence 4678886 8999999999999999999999886543 22222 233333221 1 11 122222 22
Q ss_pred CCccEEEECCCC
Q 018246 246 GTMDYIIDTVSA 257 (359)
Q Consensus 246 ~~~d~vid~~g~ 257 (359)
+..|++++++|.
T Consensus 83 g~iDilvnnAG~ 94 (266)
T d1mxha_ 83 GRCDVLVNNASA 94 (266)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 589999999883
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.14 E-value=0.017 Score=45.19 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=36.9
Q ss_pred EEEEE-CCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC
Q 018246 186 HLGVA-GLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG 228 (359)
Q Consensus 186 ~VlI~-G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g 228 (359)
+|.|+ |+|.+|.+.++.+...|++|++.+|++++.+.+.++++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 47788 67999999999999999999999999998877755443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.08 E-value=0.15 Score=39.05 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=64.3
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc----EEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD----AFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
+|-|+|.|.+|...+.-+...|.+|++.++++++.+.+.+..+.. ........+.+.......+.++.++....
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT 82 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchh
Confidence 377889999999999999899999999999999999885554421 11112233334444455666666665443
Q ss_pred --hHHHHHhccccCCEEEEecCC
Q 018246 260 --SLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 260 --~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.+......+.++..++.++..
T Consensus 83 ~~~~~~~~~~~~~~~iii~~st~ 105 (178)
T d1pgja2 83 DSTIEQLKKVFEKGDILVDTGNA 105 (178)
T ss_dssp HHHHHHHHHHCCTTCEEEECCCC
T ss_pred hhhhhhhhhhccccceecccCcc
Confidence 235566677777777776543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.07 E-value=0.048 Score=44.04 Aligned_cols=82 Identities=23% Similarity=0.162 Sum_probs=60.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
-.|.+|+|-|.|.+|..+++++...|++|++++.+..+.+.+....|...+-+. +-+.-..|+.+=|.-+...-
T Consensus 37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~------~~~~~~cDIl~PcA~~~~I~ 110 (230)
T d1leha1 37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPN------AIYGVTCDIFAPCALGAVLN 110 (230)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGG------GTTTCCCSEEEECSCSCCBS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCc------ccccccccEecccccccccC
Confidence 378999999999999999999999999999999999998888777777643211 01223678888777654422
Q ss_pred HHHHhccc
Q 018246 262 APLLGLLK 269 (359)
Q Consensus 262 ~~~~~~l~ 269 (359)
......++
T Consensus 111 ~~~~~~l~ 118 (230)
T d1leha1 111 DFTIPQLK 118 (230)
T ss_dssp TTHHHHCC
T ss_pred hHHhhccC
Confidence 33344443
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.07 E-value=0.011 Score=49.65 Aligned_cols=34 Identities=35% Similarity=0.373 Sum_probs=31.1
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
+++|+|+|+|+.|++++..+++.|.+|+++.+++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5789999999999999999999999999998753
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.35 Score=37.05 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=79.2
Q ss_pred EEEEECCchHHHH-HHHHHHHCC--CeEE-EEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 186 HLGVAGLGGLGHV-AVKIGKAFG--LKVT-VISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 186 ~VlI~G~g~vG~~-a~~la~~~g--~~V~-~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+|.|+|+|.+|.- .+...+..+ .+++ +.++++++.+.+.++++...++ ++.+.+-+ ...+|+|+.++....-.
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~ell~-~~~id~v~I~tp~~~h~ 81 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF--DSYEELLE-SGLVDAVDLTLPVELNL 81 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE--SCHHHHHH-SSCCSEEEECCCGGGHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee--eeeecccc-ccccceeeccccccccc
Confidence 5789999999974 566666553 3666 4577788888777888876654 22222111 24799999888876546
Q ss_pred HHHHhccccCCEEEEecCCCCCeeeCHHH------HHh-cCcEE-EEeec-CC--HHHHHHHHHHHHhCCCc
Q 018246 262 APLLGLLKVNGKLVTVGLPEKPLEVPIFA------LVG-ARRLV-GGSNV-GG--MKETQEMLDFCAKHNIA 322 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~------~~~-k~~~i-~g~~~-~~--~~~~~~~~~~l~~g~i~ 322 (359)
+.+..++..+ +=|++.- ++..+..+ +.. ++..+ .+... .+ ...+.++.+++.+|++-
T Consensus 82 ~~~~~al~~g-k~V~~EK---Pl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig 149 (181)
T d1zh8a1 82 PFIEKALRKG-VHVICEK---PISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN 149 (181)
T ss_dssp HHHHHHHHTT-CEEEEES---SSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccccccc-hhhhcCC---CCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence 6777777765 4455532 23333322 222 23333 33332 22 24588889999999873
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=94.99 E-value=0.044 Score=41.95 Aligned_cols=97 Identities=14% Similarity=0.340 Sum_probs=64.3
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeC---ChhhHHHHHHH---cC---Cc---------------EEecCCCHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVIST---SPKKESEAISK---LG---AD---------------AFLVSSDPAKV 241 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~---~~~~~~~~~~~---~g---~~---------------~v~~~~~~~~~ 241 (359)
+|.|.|-|-+|+++.+.+...+.+|+++-. +.+.+.++++- .| .+ .+.+.++++.+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~i 81 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENI 81 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGGC
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHHC
Confidence 578999999999999999888887766643 23455566441 11 11 01111222222
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
.+...++|+|+||+|.-.+.+.+...+..+-+-|.+..+..
T Consensus 82 ~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~ 122 (169)
T d1dssg1 82 PWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSA 122 (169)
T ss_dssp CHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS
T ss_pred CccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCcc
Confidence 22223899999999987778899999998877777766554
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=94.90 E-value=0.055 Score=45.06 Aligned_cols=95 Identities=22% Similarity=0.178 Sum_probs=64.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc----CC-----cEEecCCCHHHHHHhcCCccEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL----GA-----DAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~----g~-----~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
..++|||+|.|. |..+..++++.+. +|.++.-+++=.+.+.+-+ ++ -.++..+....+++....+|+++
T Consensus 75 ~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 347899998654 4456667777765 9999999988777663333 21 13444444566666556899997
Q ss_pred E-CCC---------ChhhHHHHHhccccCCEEEEec
Q 018246 253 D-TVS---------AVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d-~~g---------~~~~~~~~~~~l~~~G~~v~~g 278 (359)
- ... +...++.+.++|+++|.++.-.
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 4 322 2234788999999999998754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.89 E-value=0.036 Score=43.07 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=53.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChh--hHHHHHHHcCCcEEe----c---CCCHHHHHHhcCCccEEEECCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK--KESEAISKLGADAFL----V---SSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~--~~~~~~~~~g~~~v~----~---~~~~~~~~~~~~~~d~vid~~g 256 (359)
+|.|+|+|..|.+.+..+...|.+|.+.+|..+ ..+.+ .+......+ . ....+.+.+.....|+++.++.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSI-SAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHH-HTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHH-hhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 588999999999988888888999999988533 23333 221110000 0 0012345555678999999999
Q ss_pred ChhhHHHHHhcccc
Q 018246 257 AVHSLAPLLGLLKV 270 (359)
Q Consensus 257 ~~~~~~~~~~~l~~ 270 (359)
... ++..++.+.+
T Consensus 81 s~~-~~~~~~~l~~ 93 (180)
T d1txga2 81 TDG-VLPVMSRILP 93 (180)
T ss_dssp GGG-HHHHHHHHTT
T ss_pred hhh-hHHHHHhhcc
Confidence 876 6666655444
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=94.88 E-value=0.07 Score=40.78 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=61.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCC--hhhHHHHHHH---cC---Cc---------------EEecCCCHHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTS--PKKESEAISK---LG---AD---------------AFLVSSDPAKVK 242 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~--~~~~~~~~~~---~g---~~---------------~v~~~~~~~~~~ 242 (359)
+|.|.|-|-+|+.+.+++...+.+|+++-.. .+.+.++.+- .| .+ .+...+++..+.
T Consensus 2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i~ 81 (168)
T d2g82a1 2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEIP 81 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGCC
T ss_pred EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHCc
Confidence 5789999999999999888878877776533 2334444221 11 11 111222223333
Q ss_pred HhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 243 AAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 243 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+...++|+|+||+|.-.+.+.+..++..+-+=|.+..+.
T Consensus 82 W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~ 120 (168)
T d2g82a1 82 WAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA 120 (168)
T ss_dssp TGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred ccccCCceeEeccccccchHHhhhhhccccceeeecccc
Confidence 333489999999998777788888998876666665554
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=94.86 E-value=0.15 Score=38.45 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=57.1
Q ss_pred CEEEEECCchHHH-HHHHHHHHCCC-eEEEEe-CChhh--HHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEECCCC
Q 018246 185 KHLGVAGLGGLGH-VAVKIGKAFGL-KVTVIS-TSPKK--ESEAISKLGADAFLVSSDPAKVKAAM--GTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~g~vG~-~a~~la~~~g~-~V~~v~-~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~ 257 (359)
=+|.|+|+|.+|. ...++.+.... +++++. ++.+. ..++ +++|..... ...+.+.+.. .++|+||.++..
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a-~~~~i~~~~--~~~d~l~~~~~~~~iDiVf~ATpa 81 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA-QRMGVTTTY--AGVEGLIKLPEFADIDFVFDATSA 81 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH-HHTTCCEES--SHHHHHHHSGGGGGEEEEEECSCH
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh-hhcCCcccc--cceeeeeecccccccCEEEEcCCc
Confidence 3689999999987 56788887654 777765 44432 3445 778866432 2223333322 379999998875
Q ss_pred hhhHH--HHHhccccCCEEEEecC
Q 018246 258 VHSLA--PLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 258 ~~~~~--~~~~~l~~~G~~v~~g~ 279 (359)
..-.. ...+.++.|-.+++...
T Consensus 82 g~h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 82 SAHVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECST
T ss_pred hhHHHhHHHHHHHHcCCEEEEccc
Confidence 32133 44555666777777654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.86 E-value=0.067 Score=44.71 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=51.8
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-----hHHHH--HHHcCCcEEe-cCCCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-----KESEA--ISKLGADAFL-VSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-----~~~~~--~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~ 255 (359)
++|||.|+ |.+|...+..+...|.+|++++|++. +.+.+ ....+++.+. |..+.+.+.....+.+.++.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 46999986 99999999999999999999998643 11221 1334454432 4556666777777888888877
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
+.
T Consensus 84 ~~ 85 (312)
T d1qyda_ 84 AG 85 (312)
T ss_dssp CC
T ss_pred hh
Confidence 53
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.84 E-value=0.025 Score=40.84 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=33.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
+++++++|+|+|.+|.-++..++..|.+|+++.+++.
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred hcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5678999999999999999999999999999997763
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=94.84 E-value=0.029 Score=48.36 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc----CCcEE-ecCCCHHHHHHhcC--CccEEEEC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL----GADAF-LVSSDPAKVKAAMG--TMDYIIDT 254 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~----g~~~v-~~~~~~~~~~~~~~--~~d~vid~ 254 (359)
.|++|||+|+ |-+|...++.+...|.+|+++++.......+.+.. +...+ .|-.+.+.+.++.. .+|+++.+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~ 86 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM 86 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence 4789999986 99999999999999999999998766432221221 23322 24456665555543 78999988
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
++.
T Consensus 87 aa~ 89 (356)
T d1rkxa_ 87 AAQ 89 (356)
T ss_dssp CSC
T ss_pred hcc
Confidence 874
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=94.82 E-value=0.014 Score=47.16 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=60.2
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHH---CCCeEEEEeCChhhHHHHHHHc---CCc---EEecCCCHHHHHHhcCCccEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKA---FGLKVTVISTSPKKESEAISKL---GAD---AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~---~g~~V~~v~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~~~~d~v 251 (359)
++++.+||-+|+|. |..+..+++. .+++|++++.+++-++.+.++. +.. .....+. ..--...+|++
T Consensus 37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~~~~~~~~d~i 112 (225)
T d1im8a_ 37 VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMV 112 (225)
T ss_dssp CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---TTCCCCSEEEE
T ss_pred cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---hccccccceee
Confidence 47889999999753 5556666664 4789999999999888885432 211 1221111 11111256776
Q ss_pred EECCCC--------hhhHHHHHhccccCCEEEEec
Q 018246 252 IDTVSA--------VHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 252 id~~g~--------~~~~~~~~~~l~~~G~~v~~g 278 (359)
+-+..- ...+..+.+.|+|+|.++...
T Consensus 113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence 654321 135789999999999999763
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.81 E-value=0.12 Score=40.01 Aligned_cols=88 Identities=8% Similarity=0.027 Sum_probs=61.2
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEEE-EeCChhhHHHHHHHcCCc---EEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTV-ISTSPKKESEAISKLGAD---AFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~~-v~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
+|.|+|+|.+|...++..+.. ++++++ .++++++.+.+.++++.. .++ ++.+.+-. ...+|+|+.++....-
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~iD~v~I~tp~~~h 79 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH--GSYESLLE-DPEIDALYVPLPTSLH 79 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE--SSHHHHHH-CTTCCEEEECCCGGGH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec--CcHHHhhh-ccccceeeecccchhh
Confidence 578899999999988888877 567775 467777777776777742 232 23222211 2479999999887665
Q ss_pred HHHHHhccccCCEEEEe
Q 018246 261 LAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~ 277 (359)
++.+..++..+-. |.+
T Consensus 80 ~~~~~~~l~~g~~-v~~ 95 (184)
T d1ydwa1 80 VEWAIKAAEKGKH-ILL 95 (184)
T ss_dssp HHHHHHHHTTTCE-EEE
T ss_pred cchhhhhhhccce-eec
Confidence 7788888887644 455
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.096 Score=44.79 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=64.2
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHH----------HcCC----cEEecC--C
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAIS----------KLGA----DAFLVS--S 236 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~----------~~g~----~~v~~~--~ 236 (359)
.+... .++++++||-+|+|. |..+.++|+..++ ++++++.+++..+.+.+ .+|. -.++.. .
T Consensus 143 ~~~~~-~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 143 MIDEI-KMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHS-CCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHc-CCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 34444 459999999999864 7778899999988 89999999987665522 1221 122221 2
Q ss_pred CHHHHHHhcCCccEEEECCC--Ch---hhHHHHHhccccCCEEEEec
Q 018246 237 DPAKVKAAMGTMDYIIDTVS--AV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 237 ~~~~~~~~~~~~d~vid~~g--~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
+... ......+|+|+-..- .+ ..+...++.|+|||++|..-
T Consensus 221 ~~~~-~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 221 SEEW-RERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp SHHH-HHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccc-ccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 2221 111124678774221 11 24567888999999999864
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=94.80 E-value=0.19 Score=38.28 Aligned_cols=97 Identities=18% Similarity=0.335 Sum_probs=62.3
Q ss_pred EEEEECCchHHHHHHHHHHHCC-CeEEEEeC---ChhhHHHHHHH---cC---Cc------E---------EecCCCHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVIST---SPKKESEAISK---LG---AD------A---------FLVSSDPAK 240 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~---~~~~~~~~~~~---~g---~~------~---------v~~~~~~~~ 240 (359)
+|.|.|-|-+|+++.+.+.... .+++++-. +.+.+.++++- .| .+ . +.+.++++.
T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~~ 82 (169)
T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK 82 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChhh
Confidence 5889999999999998877554 57776643 34455666441 11 11 0 111122222
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
+.+...++|+|+||+|.-.....+...+..+-+-|.+..+..
T Consensus 83 i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~ 124 (169)
T d1u8fo1 83 IKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA 124 (169)
T ss_dssp CCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred CCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence 222223899999999987767888889998877777765554
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.77 E-value=0.061 Score=46.07 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCEEEEECCc---hHHHHHHHHHHHCCCeEEEEeCChhhHH
Q 018246 184 GKHLGVAGLG---GLGHVAVKIGKAFGLKVTVISTSPKKES 221 (359)
Q Consensus 184 g~~VlI~G~g---~vG~~a~~la~~~g~~V~~v~~~~~~~~ 221 (359)
++..||.|+| ++|+++++.+...|++|+++.++.....
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~ 42 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI 42 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence 4677888843 8999999999999999999987765443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.42 Score=35.87 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=76.4
Q ss_pred EEEEECCchHHHH-HHHHHHHC-CCeEEE-EeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHH
Q 018246 186 HLGVAGLGGLGHV-AVKIGKAF-GLKVTV-ISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLA 262 (359)
Q Consensus 186 ~VlI~G~g~vG~~-a~~la~~~-g~~V~~-v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 262 (359)
+|.|+|+|.+|.- .+...+.. +.++++ .++++++.+.+.++++... +++. ..+...+|+|+.++....-.+
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~---~~l~~~~D~V~I~tp~~~h~~ 76 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY---ADSL---SSLAASCDAVFVHSSTASHFD 76 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB---CSSH---HHHHTTCSEEEECSCTTHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc---cccc---hhhhhhcccccccccchhccc
Confidence 5789999999964 56666655 666654 5677888877778888652 2222 233457999998887665467
Q ss_pred HHHhccccCCEEEEecCCCCCeeeCHHHH------H-hcCcEEE-EeecCCHHH-HHHHHHHHHhCCCcc
Q 018246 263 PLLGLLKVNGKLVTVGLPEKPLEVPIFAL------V-GARRLVG-GSNVGGMKE-TQEMLDFCAKHNIAA 323 (359)
Q Consensus 263 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~------~-~k~~~i~-g~~~~~~~~-~~~~~~~l~~g~i~~ 323 (359)
.+..+|..+-. |++.- ++..+..+. . .++..+. +........ .+.+.+++.+|.+-.
T Consensus 77 ~~~~al~~gk~-V~~EK---Pla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~~~~i~~g~ig~ 142 (164)
T d1tlta1 77 VVSTLLNAGVH-VCVDK---PLAENLRDAERLVELAARKKLTLMVGFNRRFFVGCARHFIECVQNQTVPQ 142 (164)
T ss_dssp HHHHHHHTTCE-EEEES---SSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHHHHHHHHHHHHHTCCCT
T ss_pred cccccccccce-eeccc---cccCCHHHHHHHHHHHHHcCCcEEEEeccccCHHHHHHHHHHHHCCCCCC
Confidence 77777877655 44432 222222211 1 2333333 322221222 356778888888743
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.68 E-value=0.03 Score=40.53 Aligned_cols=36 Identities=31% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
..+++|+|+|+|.+|+-+++.+..+|.+|+++.+.+
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 567899999999999999999999999999998764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.63 E-value=0.028 Score=40.21 Aligned_cols=35 Identities=31% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
.++++|+|+|.+|+-+++.+..+|.+|+++.+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 47899999999999999999999999999997763
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=94.59 E-value=0.029 Score=46.30 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=64.0
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecC--CCHHHHHHhcCCccEEEECCCCh-
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVS--SDPAKVKAAMGTMDYIIDTVSAV- 258 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~--~~~~~~~~~~~~~d~vid~~g~~- 258 (359)
.++.+||-+|+|. |..+..++.....+|++++.+++-++.+.+++.....++. .+.....-..+.||+|+..-.-.
T Consensus 92 ~~~~~vLD~GcG~-G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h 170 (254)
T d1xtpa_ 92 HGTSRALDCGAGI-GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTT-THHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCCeEEEecccC-ChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence 6778899999875 7778888877667999999999988888655543222211 11111111123799998644321
Q ss_pred -------hhHHHHHhccccCCEEEEe
Q 018246 259 -------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 259 -------~~~~~~~~~l~~~G~~v~~ 277 (359)
..+..+.+.|+++|.++..
T Consensus 171 l~d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 171 LTDADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 2467888999999999875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.49 E-value=0.026 Score=44.21 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=35.5
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHH
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~ 223 (359)
=++|.|+|+|.+|...+.++...|.+|++.+++++.++.+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~ 43 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG 43 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhh
Confidence 3579999999999999999999999999999999876655
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.45 E-value=0.027 Score=48.87 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=51.7
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-Cc-EEecCCCHHHHHHhcCCccEEEECCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-AD-AFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
..+-+|||+|+ |.+|...+..+...|.+|+++++....... .... .. ...|..+.+.+.....++|.|+.+++
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh--hhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 35778999986 999999999999999999999865433111 1122 22 33455556666666679999999774
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=94.45 E-value=0.029 Score=46.14 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=60.0
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc-EEec--CCCHHHHHHhcCCccEEEEC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD-AFLV--SSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~-~v~~--~~~~~~~~~~~~~~d~vid~ 254 (359)
.+++++||-+|+|. |..+..+++.-..+|++++.+++.++.+.++ .+.. .+.. .+.........+.+|+|+..
T Consensus 22 ~~~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 36899999999865 5556677766445899999999988888443 2321 2211 11000000012369999864
Q ss_pred CCCh----------hhHHHHHhccccCCEEEEe
Q 018246 255 VSAV----------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 255 ~g~~----------~~~~~~~~~l~~~G~~v~~ 277 (359)
-.-. ..+..+.+.|+|+|.++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 4321 2456677899999998864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.40 E-value=0.025 Score=48.31 Aligned_cols=91 Identities=20% Similarity=0.134 Sum_probs=52.3
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHH---HHHcCC-c--EEecCCCHHHHHHhcCCccEEEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEA---ISKLGA-D--AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~---~~~~g~-~--~v~~~~~~~~~~~~~~~~d~vid 253 (359)
+.+|++||-+|+|. |++++.+|+ .|+ +|++++.++.- ..+ .+..+. + .++..+.. .+......+|+++.
T Consensus 31 ~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~-~~~~~~~~~D~ivs 106 (316)
T d1oria_ 31 LFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVE-EVELPVEKVDIIIS 106 (316)
T ss_dssp HHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTT-TCCCSSSCEEEEEE
T ss_pred cCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHH-HcccccceeEEEee
Confidence 35889999999874 666665555 687 89999987642 222 133332 1 22222211 11111237899875
Q ss_pred CCCC-----h----hhHHHHHhccccCCEEE
Q 018246 254 TVSA-----V----HSLAPLLGLLKVNGKLV 275 (359)
Q Consensus 254 ~~g~-----~----~~~~~~~~~l~~~G~~v 275 (359)
..-. + ..+...-+.|+|+|+++
T Consensus 107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 3221 1 23445567999999875
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.30 E-value=0.035 Score=39.76 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
+..++|+|+|+|.+|+-++..++.+|.+|+++.+.+
T Consensus 20 ~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 20 KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCCCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 335789999999999999999999999999999764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.30 E-value=0.028 Score=45.60 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
+..++|+|+|+|+.|+.++..++..|.+|+++..+++
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 5778999999999999999999999999999997653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.031 Score=39.95 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.9
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
++|+|+|+|.+|+-+++.++.+|.+|+++.+.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 689999999999999999999999999999875
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=94.27 E-value=0.018 Score=43.43 Aligned_cols=83 Identities=13% Similarity=0.067 Sum_probs=53.8
Q ss_pred EEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHHhc
Q 018246 188 GVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGL 267 (359)
Q Consensus 188 lI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~ 267 (359)
=++|+|.+|.+.+..++..+..+.+..|++++.+.+.+..+... .+. .+.....|+||-|+.... +......
T Consensus 3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~-~~~------~~~~~~~DiVil~v~d~~-i~~v~~~ 74 (153)
T d2i76a2 3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKA-ATL------EKHPELNGVVFVIVPDRY-IKTVANH 74 (153)
T ss_dssp EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCC-CSS------CCCCC---CEEECSCTTT-HHHHHTT
T ss_pred EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccc-cch------hhhhccCcEEEEeccchh-hhHHHhh
Confidence 36799999999888776544345678999999999966655432 221 123456899999998876 8888888
Q ss_pred cccCCEE-EEec
Q 018246 268 LKVNGKL-VTVG 278 (359)
Q Consensus 268 l~~~G~~-v~~g 278 (359)
++..+++ +.+.
T Consensus 75 l~~~~~ivi~~s 86 (153)
T d2i76a2 75 LNLGDAVLVHCS 86 (153)
T ss_dssp TCCSSCCEEECC
T ss_pred hcccceeeeecc
Confidence 8755544 4553
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.25 E-value=0.032 Score=45.47 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
+.-++|+|+|+|..|++++..+.+.|.+|+++++.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45568999999999999999999999999999974
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.24 E-value=0.037 Score=45.79 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=41.4
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEECCCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMG--TMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~ 257 (359)
+|||+|+ |.+|...+..++..|.+|+++++++ +|..+.+.+.++.. .+|+|+.+++.
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~D~~d~~~~~~~l~~~~~d~vih~a~~ 62 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAH 62 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------ccCCCHHHHHHHHHHcCCCEEEeeccc
Confidence 5899987 9999999999999999999998753 12333333333332 56788877764
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.24 E-value=0.16 Score=36.68 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=63.8
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEECCCChh---
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFL-VSSDPAKVKAAM-GTMDYIIDTVSAVH--- 259 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~--- 259 (359)
++++|.|.|.+|..+++.++ +..|++++.++++.+.+ +..|...+. |.++++.+.++. ..++.++-+.....
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~-~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~ 77 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKV-LRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI 77 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHH-HHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHH-HhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH
Confidence 35889999999998888764 45788889999988887 677765543 344555565554 48899998887654
Q ss_pred hHHHHHhccccCCEEEEec
Q 018246 260 SLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g 278 (359)
.+-...+.+.|..+++...
T Consensus 78 ~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 78 HCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHCSSSCEEEEC
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 2234556677777666653
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.21 E-value=0.21 Score=39.85 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=58.5
Q ss_pred EEEEECCchHHH-HHHHHHHHC-CCeEE-EEeCChhhHHHHHHHcCCc--EEecCCCHHHHHHhc--CCccEEEECCCCh
Q 018246 186 HLGVAGLGGLGH-VAVKIGKAF-GLKVT-VISTSPKKESEAISKLGAD--AFLVSSDPAKVKAAM--GTMDYIIDTVSAV 258 (359)
Q Consensus 186 ~VlI~G~g~vG~-~a~~la~~~-g~~V~-~v~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~--~~~d~vid~~g~~ 258 (359)
+|.|+|+|.+|. ..+...+.. +.+++ ++++++++.+.+.+++|.. .+..+++. +++. ..+|+|+-++...
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~---~ell~~~~iD~V~I~tp~~ 111 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF---DKIAKDPKIDAVYIILPNS 111 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSG---GGGGGCTTCCEEEECSCGG
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCch---hhhcccccceeeeeccchh
Confidence 578889999996 344444444 66766 5678888888887888853 23334432 2322 3799999888876
Q ss_pred hhHHHHHhccccCCEEEEe
Q 018246 259 HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 259 ~~~~~~~~~l~~~G~~v~~ 277 (359)
.-...+.++|+.+- =+++
T Consensus 112 ~H~~~~~~al~~gk-~v~~ 129 (221)
T d1h6da1 112 LHAEFAIRAFKAGK-HVMC 129 (221)
T ss_dssp GHHHHHHHHHHTTC-EEEE
T ss_pred hhhhHHHHhhhcch-hhhc
Confidence 54677778887654 4455
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.056 Score=45.87 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=55.0
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHH--HHHHHcCC-c--EEecCCCHHHHHHhcCC
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKES--EAISKLGA-D--AFLVSSDPAKVKAAMGT 247 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~--~~~~~~g~-~--~v~~~~~~~~~~~~~~~ 247 (359)
++.......+|++||.+|+| .|+.++.+|+ .|+ +|++++.++.-.. ...++.+. + .++..+. ..+..-...
T Consensus 26 ai~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~ 102 (311)
T d2fyta1 26 FIYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI-EEVHLPVEK 102 (311)
T ss_dssp HHHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSCSC
T ss_pred HHHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH-HHhcCcccc
Confidence 34444444689999999987 5666666665 577 8999998875321 11233342 1 2232221 111111237
Q ss_pred ccEEEECC-C----Chh---h-HHHHHhccccCCEEE
Q 018246 248 MDYIIDTV-S----AVH---S-LAPLLGLLKVNGKLV 275 (359)
Q Consensus 248 ~d~vid~~-g----~~~---~-~~~~~~~l~~~G~~v 275 (359)
+|+|+... + .+. . +...-+.|+|+|+++
T Consensus 103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 99998522 2 111 1 223345799999886
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.19 E-value=0.05 Score=43.06 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=34.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~ 223 (359)
+|.|+|.|-+|+..+.++...|.+|++++.++++.+.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l 39 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI 39 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence 47889999999998888888999999999999888777
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.19 E-value=0.15 Score=34.33 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=47.2
Q ss_pred EEEEECCchHHHHH-HHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 186 HLGVAGLGGLGHVA-VKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~g~vG~~a-~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
+|-++|-|++|..+ +++++..|..|.+.|..+...-..+++.|++.... ++.+. ..+.|+|+-+..-
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~g-h~~~~----i~~~d~vV~SsAI 70 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVP-HSADN----WYDPDLVIKTPAV 70 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESS-CCTTS----CCCCSEEEECTTC
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEee-ecccc----cCCCCEEEEecCc
Confidence 56778988888754 78899999999999988755444458999875443 33222 1467888876553
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=94.19 E-value=0.075 Score=45.07 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=48.1
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCC--h---hhHHHHHHHcC-CcEE-ecCCCHHHHHHhcC--CccEEEECC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS--P---KKESEAISKLG-ADAF-LVSSDPAKVKAAMG--TMDYIIDTV 255 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~--~---~~~~~~~~~~g-~~~v-~~~~~~~~~~~~~~--~~d~vid~~ 255 (359)
+|||+|+ |.+|...++.+...|.+|+++++- . ++.+.+ ...+ ...+ .|..+.+.+..+.. .+|+||.++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~-~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a 80 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWL-SSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 80 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHH-HTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHh-hccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence 6999986 999999999998899999998731 1 122333 3333 3322 34455566666543 689999988
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
..
T Consensus 81 a~ 82 (338)
T d1orra_ 81 GQ 82 (338)
T ss_dssp CC
T ss_pred cc
Confidence 63
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.034 Score=40.18 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=31.0
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
++++|+|+|.+|+=+++.+..+|.+|+++.+.+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 689999999999999999999999999999765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=94.10 E-value=0.052 Score=43.62 Aligned_cols=92 Identities=18% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEECC-----
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGAD-AFLVSSDPAKVKAAMGTMDYIIDTV----- 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~----- 255 (359)
.++++||-+|+|. |..+..+++ .|.+|++++.+++..+.+.++..-. .++... .+.. ...+.+|+|+..-
T Consensus 19 ~~~~~VLDiGcG~-G~~~~~l~~-~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~-~~~~-~~~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 19 FRPGNLLELGSFK-GDFTSRLQE-HFNDITCVEASEEAISHAQGRLKDGITYIHSR-FEDA-QLPRRYDNIVLTHVLEHI 94 (225)
T ss_dssp CCSSCEEEESCTT-SHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSCSCEEEEESC-GGGC-CCSSCEEEEEEESCGGGC
T ss_pred CCCCcEEEEeCCC-cHHHHHHHH-cCCeEEEEeCcHHHhhhhhccccccccccccc-cccc-ccccccccccccceeEec
Confidence 4566899998764 555555554 5789999999999998885554421 222221 1111 1234799998532
Q ss_pred CChh-hHHHHH-hccccCCEEEEe
Q 018246 256 SAVH-SLAPLL-GLLKVNGKLVTV 277 (359)
Q Consensus 256 g~~~-~~~~~~-~~l~~~G~~v~~ 277 (359)
..+. .+.... ++|+|+|.++..
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEE
Confidence 2222 345565 689999998865
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.07 E-value=0.043 Score=44.75 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=58.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHH---cCCc-EEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISK---LGAD-AFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.++++||-+|+| .|..+..+++ .|.+|++++.+++-++.+.++ .|.. .++.. +.... ...+.+|+|+...+.
T Consensus 36 ~~~~~vLDiGCG-~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~-d~~~~-~~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 36 LVFDDYLDLACG-TGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ-DISNL-NINRKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCT-TSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC-CGGGC-CCSCCEEEEEECTTG
T ss_pred CCCCeEEEEeCc-CCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeecc-chhhh-cccccccccceeeee
Confidence 356789999986 3666777766 478999999999987777433 2322 22221 11111 123479999864332
Q ss_pred ------h----hhHHHHHhccccCCEEEE
Q 018246 258 ------V----HSLAPLLGLLKVNGKLVT 276 (359)
Q Consensus 258 ------~----~~~~~~~~~l~~~G~~v~ 276 (359)
. ..+..+.+.|+|+|.++.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 1 146788999999999885
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.00 E-value=0.097 Score=45.71 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=47.5
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh--------------------hhHHHHHHHcC--CcE-EecCCCHH
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP--------------------KKESEAISKLG--ADA-FLVSSDPA 239 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~--------------------~~~~~~~~~~g--~~~-v~~~~~~~ 239 (359)
|.+|||+|+ |-+|..++..+...|.+|+++|.-. ++........+ .+. ..|-.+.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 678999986 9999999999999999999997211 11111101111 222 22455566
Q ss_pred HHHHhcC--CccEEEECCC
Q 018246 240 KVKAAMG--TMDYIIDTVS 256 (359)
Q Consensus 240 ~~~~~~~--~~d~vid~~g 256 (359)
.+..+.. .+|+|+..++
T Consensus 81 ~l~~~~~~~~~d~ViHlAa 99 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGE 99 (393)
T ss_dssp HHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHhhcchheecccc
Confidence 6666544 6899999875
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.99 E-value=0.048 Score=40.00 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.1
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
+++++|+|+|+|.+|+-++..++..|.+|+++.+.+
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence 567899999999999999999999999999999765
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.14 Score=38.86 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=61.0
Q ss_pred EEEEECCchHHHHHHHHHHHCC-CeEEEEeCCh--hhHHHHHHH---cC---CcE---------------EecCCCHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVISTSP--KKESEAISK---LG---ADA---------------FLVSSDPAKV 241 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-~~V~~v~~~~--~~~~~~~~~---~g---~~~---------------v~~~~~~~~~ 241 (359)
+|.|.|-|-+|+++.+.+.... .+|+++-... +.+.++++. .| .+- +.+.++++.+
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~i 82 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANL 82 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGGG
T ss_pred EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHHC
Confidence 4788899999999999888764 4766665332 233344331 11 110 1111222333
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEK 282 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 282 (359)
.+-..++|+|+||+|.-.+.+.+..++..+-+-|.+..+..
T Consensus 83 ~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~ 123 (166)
T d1gado1 83 KWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK 123 (166)
T ss_dssp CHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred CccccCCCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence 23223899999999987778888899988876666665543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.092 Score=44.87 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=48.5
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCC----hhhHHHHH--HHcCCcEE-ecCCCHHHHHHhcC--CccEEEECC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS----PKKESEAI--SKLGADAF-LVSSDPAKVKAAMG--TMDYIIDTV 255 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~----~~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~--~~d~vid~~ 255 (359)
+|||+|+ |-+|...+..+...|.+|+++++. ........ ..-+...+ .|-.+.+.+.++.. ++|+||.++
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA 81 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence 5899986 999999999999999999999752 22222221 12233332 35566666666543 899999987
Q ss_pred C
Q 018246 256 S 256 (359)
Q Consensus 256 g 256 (359)
+
T Consensus 82 a 82 (338)
T d1udca_ 82 G 82 (338)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.0082 Score=51.30 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=43.3
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCCh-hhHHHHHHHcC-C--cEEecCCCHHHHHHhcCCccEEEECCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSP-KKESEAISKLG-A--DAFLVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~-~~~~~~~~~~g-~--~~v~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
++|||.|+ |.+|...+..+...|.+|+++++.. .+.+.+ ...- . -.+.+.+. +..+..++|+||.+++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~-~~~~~~~~~d~~~~~~---~~~~~~~~d~VihlAa 74 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV-EHWIGHENFELINHDV---VEPLYIEVDQIYHLAS 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT-GGGTTCTTEEEEECCT---TSCCCCCCSEEEECCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH-HHhcCCCceEEEehHH---HHHHHcCCCEEEECcc
Confidence 57999987 9999999999988999999997522 222222 1111 1 12333221 2223347999999875
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.80 E-value=0.11 Score=44.30 Aligned_cols=96 Identities=24% Similarity=0.256 Sum_probs=61.1
Q ss_pred CCCCCEEEEECC--chHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh---cCCc
Q 018246 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFGL-KVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA---MGTM 248 (359)
Q Consensus 181 ~~~g~~VlI~G~--g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~---~~~~ 248 (359)
+++|++||-+++ |..++ .+|+ .|+ +|+.++.+++.++.+.+ ..|.. +++..+-.+.+..+ ...|
T Consensus 143 ~~~g~~VLDl~~g~G~~si---~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAI---HAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTTCEEEETTCTTTHHHH---HHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCCeeecccCcccchhh---hhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 478999998765 44444 3443 477 89999999998777633 34432 33333323444333 2479
Q ss_pred cEEEECCCC---------------hhhHHHHHhccccCCEEEEecCC
Q 018246 249 DYIIDTVSA---------------VHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 249 d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
|+|+--... ...+..+.+.|+|||.++.+...
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999853331 11356788899999999988544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.023 Score=44.64 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=59.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCC-h---
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSA-V--- 258 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-~--- 258 (359)
.+.+|.|+|.|.+|...+++++.+|.+|++.++...... ... .... .++++....|++..+..- +
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-----~~~---~~~~---~l~ell~~sDii~i~~plt~~T~ 111 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-----GNA---TQVQ---HLSDLLNMSDVVSLHVPENPSTK 111 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-----TTC---EECS---CHHHHHHHCSEEEECCCSSTTTT
T ss_pred cceEEEEeecccchhhhhhhcccccceEeeccccccchh-----hhh---hhhh---hHHHHHhhccceeecccCCcchh
Confidence 678999999999999999999999999999997643210 011 1111 233444457888876652 2
Q ss_pred hhH-HHHHhccccCCEEEEecC
Q 018246 259 HSL-APLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 259 ~~~-~~~~~~l~~~G~~v~~g~ 279 (359)
..+ ...++.|+++..+|.++-
T Consensus 112 ~li~~~~l~~mk~~a~lIN~aR 133 (188)
T d1sc6a1 112 NMMGAKEISLMKPGSLLINASR 133 (188)
T ss_dssp TCBCHHHHHHSCTTEEEEECSC
T ss_pred hhccHHHHhhCCCCCEEEEcCc
Confidence 112 577888888888888754
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=93.70 E-value=0.16 Score=42.05 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=27.1
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
.+||.|+ +++|+++++.+...|++|++.+++.+
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~ 37 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA 37 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 3567776 89999999999999999998776543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.095 Score=43.80 Aligned_cols=95 Identities=19% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcC---------CcEEecCCCHHHHHHhcCCccEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLG---------ADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.-++|||+|.|. |..+-.++++.+. +|+++.-+++=.+.+.+-+. --.++..+....+++..+.+|+|+
T Consensus 78 ~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 347899987654 3445566777665 99999988887776633331 123333333455665556899997
Q ss_pred -ECCC---------ChhhHHHHHhccccCCEEEEec
Q 018246 253 -DTVS---------AVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 -d~~g---------~~~~~~~~~~~l~~~G~~v~~g 278 (359)
|... +...++.+.++|+++|.++.-.
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 4332 1124678889999999988653
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.67 E-value=0.037 Score=46.85 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
...++|+|+|+|+.|+.++..+...|.+|+++.+++
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 455789999999999999999998999999999764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=93.66 E-value=0.1 Score=43.24 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=50.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhH------HHH--HHHcCCcEEe-cCCCHHHHHHhcCCccEEEEC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKE------SEA--ISKLGADAFL-VSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~------~~~--~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~ 254 (359)
++|||+|+ |.+|...+..+...|.+|++++|+.... ... ....+++.+. |..+.........+.+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~ 83 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST 83 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeec
Confidence 57999987 9999999999999999999999865431 111 0222344332 334444445555678888888
Q ss_pred CCCh
Q 018246 255 VSAV 258 (359)
Q Consensus 255 ~g~~ 258 (359)
.+..
T Consensus 84 ~~~~ 87 (307)
T d1qyca_ 84 VGSL 87 (307)
T ss_dssp CCGG
T ss_pred cccc
Confidence 8754
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.047 Score=39.53 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=31.1
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
++++|+|+|.+|+-++..++.+|.+|+++.+++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 689999999999999999999999999999875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.63 E-value=0.06 Score=38.58 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
..++++|+|+|.+|+=.++.++.+|.+|+++.+++
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 34789999999999999999999999999999765
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.61 E-value=0.055 Score=38.48 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=31.2
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
.++++|+|+|.+|+-+++.++.+|.+|+++.+.+
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence 3789999999999999999999999999998765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.58 E-value=0.31 Score=36.09 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=48.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcC-------CcEEecCCCHHHHHHhcCCccEEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLG-------ADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g-------~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
..+.+|.|+|+|.+|...+..+...+. ++..++..+++.+-...++. ....+...+. +...+.|+|+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----~~l~daDvvv 79 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV 79 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----HHhccceeEE
Confidence 466789999999999998888887775 89999998877433222221 1111212221 2245789999
Q ss_pred ECCCCh
Q 018246 253 DTVSAV 258 (359)
Q Consensus 253 d~~g~~ 258 (359)
.++|.+
T Consensus 80 itag~~ 85 (148)
T d1ldna1 80 ICAGAN 85 (148)
T ss_dssp ECCSCC
T ss_pred Eecccc
Confidence 988853
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=93.54 E-value=0.033 Score=45.23 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=31.6
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK 219 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~ 219 (359)
++++||.|+ +++|++.++.+...|++|++++++++.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 367889986 999999999999999999999988764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.51 E-value=0.14 Score=42.93 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcC--------C-cEEecCCCHHHHHHhcC-CccEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLG--------A-DAFLVSSDPAKVKAAMG-TMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g--------~-~~v~~~~~~~~~~~~~~-~~d~v 251 (359)
.-++|||+|.|. |..+-.++++.+. +|.+++-+++-.+.+.+-++ . -.++..+....+.+..+ .||++
T Consensus 80 ~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 346899998644 4445577777776 89999999887777633231 1 13333333456666554 79988
Q ss_pred E-ECCC---------ChhhHHHHHhccccCCEEEEec
Q 018246 252 I-DTVS---------AVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 252 i-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 278 (359)
+ |+.. +...++.+.++|+++|.++.-.
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 7 4432 1234788999999999998754
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.50 E-value=0.049 Score=39.27 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
.++++|+|+|.+|+=.++.++.+|.+|+++.++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 357999999999999999999999999999865
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.48 E-value=0.027 Score=47.09 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=30.2
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
.|+|+|+|+.|++++..++..|.+|.++++.++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 489999999999999999999999999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.065 Score=42.92 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=63.1
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC---Cc--EEecCCCHHHHHHhcCCccEEEECC
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLG---AD--AFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g---~~--~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
..++.+||-+|+|. |..+..+++..+.+|++++.+++-++.+.+.+. .. ..+..+ ...+....+.+|+|+..-
T Consensus 58 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d-~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGI-GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG-LQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTT-THHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECC-GGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCC-CHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccc-cccccccccccccccccc
Confidence 36778899999864 667777777666799999999998888844433 11 222111 111111124789998733
Q ss_pred C-----Ch---hhHHHHHhccccCCEEEEec
Q 018246 256 S-----AV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 256 g-----~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
. .+ ..+..+.+.|+|+|.++...
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 2 22 25778899999999998763
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.48 E-value=0.56 Score=34.46 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=46.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcC-Cc---EEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLG-AD---AFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g-~~---~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
.+|.|+|+ |.+|..++.++...+. ++..++.++.+.+.. ++- .. ..-.........+...+.|+|+-+.|.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~ 78 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence 36889996 9999999999998886 788888876543322 322 11 110011122233445689999998884
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.47 E-value=0.14 Score=43.23 Aligned_cols=95 Identities=22% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC---------cEEecCCCHHHHHHhcCCccEEEE
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA---------DAFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~vid 253 (359)
.++|||+|.|. |..+-.++++... +|+++.-+++=.+.+.+-+.. -.++..+....+++....||+||-
T Consensus 107 pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~ 185 (312)
T d2b2ca1 107 PKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 185 (312)
T ss_dssp CCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence 46899998654 3345577777765 899999998877777333331 123323333566655568999984
Q ss_pred CCCC----------hhhHHHHHhccccCCEEEEecC
Q 018246 254 TVSA----------VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 254 ~~g~----------~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
-+.. ...++.+.++|+++|.++.-+.
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 3221 2236778889999999987643
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=93.41 E-value=0.15 Score=43.14 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=62.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcC-----C-----cEEecCCCHHHHHHhcCCccEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLG-----A-----DAFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g-----~-----~~v~~~~~~~~~~~~~~~~d~v 251 (359)
..++|||+|.|. |..+-+++++... +|+++..+++-.+.+.+-+. + -.++..+..+.+++....||+|
T Consensus 77 ~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 347899988754 4556667776654 99999999887777644331 1 1344344445666655689999
Q ss_pred E-ECC---CC---------hhhHHHHHhccccCCEEEEe
Q 018246 252 I-DTV---SA---------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 i-d~~---g~---------~~~~~~~~~~l~~~G~~v~~ 277 (359)
+ |.. +. ...+..+.++|+++|.++.-
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 7 432 11 12467889999999998764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=93.38 E-value=0.11 Score=44.25 Aligned_cols=97 Identities=15% Similarity=0.034 Sum_probs=60.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc--EEecCCCHHHHHHh---cCCccEEEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD--AFLVSSDPAKVKAA---MGTMDYIID 253 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~---~~~~d~vid 253 (359)
.+|++||-+++|. |..++++|+ .+++|+.++.++..++.+.+ ..|.+ .++..+..+..+.+ ...||+|+-
T Consensus 144 ~~g~rVLDl~~gt-G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYA-GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTT-THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCC-cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4689999986543 223345554 34599999999998777733 34433 23333333444433 247999985
Q ss_pred CCC-----Ch----------hhHHHHHhccccCCEEEEecCC
Q 018246 254 TVS-----AV----------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 254 ~~g-----~~----------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
-.. .. ..+..+++.|+|||.++.+...
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 322 11 2345778899999999987554
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=93.36 E-value=0.24 Score=37.82 Aligned_cols=96 Identities=16% Similarity=0.266 Sum_probs=59.6
Q ss_pred EEEEECCchHHHHHHHHHHHCC----CeEEEEe--CChhhHHHHHH------HcCCc---------------EEecCCCH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG----LKVTVIS--TSPKKESEAIS------KLGAD---------------AFLVSSDP 238 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g----~~V~~v~--~~~~~~~~~~~------~~g~~---------------~v~~~~~~ 238 (359)
+|.|.|-|-+|+++.+.+...+ .+|+++- .+.+.+.++++ ++... .+...+++
T Consensus 3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p 82 (173)
T d1obfo1 3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNP 82 (173)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCCH
Confidence 4788999999999998876533 3565555 23334444433 11111 11122222
Q ss_pred HHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 239 AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 239 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+.+...++|+|+||+|.-.....+...|..+-+-|.+..+.
T Consensus 83 ~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~ 125 (173)
T d1obfo1 83 AQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG 125 (173)
T ss_dssp GGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred HHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCC
Confidence 3333323489999999998666788889999887777776554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.36 E-value=0.18 Score=41.79 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=58.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCC---------------cEEecCCCHHHHHHhcC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGA---------------DAFLVSSDPAKVKAAMG 246 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~---------------~~v~~~~~~~~~~~~~~ 246 (359)
...++|||+|+|. |..+-.++++-..+|+++.-+++=.+.+.+-++. -.++..+....+++ .+
T Consensus 71 ~~p~~vLiiG~G~-G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGD-GGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 148 (276)
T ss_dssp SCCCEEEEEECTT-SHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCceEEEecCCc-hHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence 3457899987653 2233444554444899999988777666333321 13443333345543 46
Q ss_pred CccEEE-ECCCC---------hhhHHHHHhccccCCEEEEe
Q 018246 247 TMDYII-DTVSA---------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 247 ~~d~vi-d~~g~---------~~~~~~~~~~l~~~G~~v~~ 277 (359)
.+|+|+ |.... ...++.+.++|+++|.++.-
T Consensus 149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 899997 44331 23477899999999998864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.36 E-value=0.072 Score=39.90 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=55.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAPLL 265 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~ 265 (359)
+|-|+|.|.+|...+.-++..|.+|++.++.+++.... ...+.... +. ..++....|+||-|+......+.+.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~~-~~-----~~e~~~~~diIi~~v~~~~~~~~~~ 74 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE-RARTVGVT-ET-----SEEDVYSCPVVISAVTPGVALGAAR 74 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH-HHHHHTCE-EC-----CHHHHHTSSEEEECSCGGGHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH-hhhccccc-cc-----HHHHHhhcCeEEEEecCchHHHHHH
Confidence 57889999999999999999999999988776655444 22232221 11 1233456899999998776444433
Q ss_pred hccc-cCCEEEEecC
Q 018246 266 GLLK-VNGKLVTVGL 279 (359)
Q Consensus 266 ~~l~-~~G~~v~~g~ 279 (359)
.... .+..++++..
T Consensus 75 ~~~~~~~~~~id~st 89 (152)
T d1i36a2 75 RAGRHVRGIYVDINN 89 (152)
T ss_dssp HHHTTCCSEEEECSC
T ss_pred hhcccCCceeeccCc
Confidence 3222 2345555543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.17 E-value=0.11 Score=40.63 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=58.2
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCC--c--EEecCCCHHHHHHhc-CCccEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGA--D--AFLVSSDPAKVKAAM-GTMDYI 251 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~--~--~v~~~~~~~~~~~~~-~~~d~v 251 (359)
...++++||-+|+|. |..++.+++ .+.+|++++.++...+.+.+ ..+. . .++..+..+ ... +.+|+|
T Consensus 49 ~~~~~~~VLDiGcG~-G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~---~~~~~~fD~I 123 (194)
T d1dusa_ 49 VVDKDDDILDLGCGY-GVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKDRKYNKI 123 (194)
T ss_dssp CCCTTCEEEEETCTT-SHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTTSCEEEE
T ss_pred CcCCCCeEEEEeecC-ChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh---hhccCCceEE
Confidence 347899999998753 444555555 46799999999887777733 2232 1 222222111 112 379999
Q ss_pred EECCC---Ch----hhHHHHHhccccCCEEEEe
Q 018246 252 IDTVS---AV----HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 id~~g---~~----~~~~~~~~~l~~~G~~v~~ 277 (359)
+-... +. ..++.+.+.|+|+|+++.+
T Consensus 124 i~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 124 ITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp EECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence 96432 11 2367788999999998664
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.17 E-value=0.05 Score=44.59 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=29.7
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
+.|||.|+ +++|++.++.+...|++|++++++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 46788886 99999999999999999999998754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.10 E-value=0.05 Score=44.78 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.4
Q ss_pred EEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK 218 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~ 218 (359)
.|+|+|+|+.|++++.++++.|. +|.++.++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 58999999999999999999997 8889887653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.03 E-value=0.063 Score=38.89 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
+..++++|+|+|.+|+=+++..+.+|.+|+++.+.+
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 445789999999999999999999999999998765
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.15 Score=43.55 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=48.1
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh----hHHHHH--HHcCCc-EEecCCCHHHHHHhc--CCccEEEEC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK----KESEAI--SKLGAD-AFLVSSDPAKVKAAM--GTMDYIIDT 254 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~----~~~~~~--~~~g~~-~v~~~~~~~~~~~~~--~~~d~vid~ 254 (359)
+.|||+|+ |-+|...+..+...|.+|+++++... ...... ..-+.. ...|-.+.+.+..+. .++|+|+.+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 47899986 99999999999999999999874211 111110 122233 233556666665554 389999998
Q ss_pred CCC
Q 018246 255 VSA 257 (359)
Q Consensus 255 ~g~ 257 (359)
++.
T Consensus 82 Aa~ 84 (347)
T d1z45a2 82 AGL 84 (347)
T ss_dssp CSC
T ss_pred ccc
Confidence 764
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.12 Score=37.19 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=54.2
Q ss_pred CCCCEEEEECCchH-----------HHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-CcEEecC-CCHHHHHHhcC--
Q 018246 182 EPGKHLGVAGLGGL-----------GHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-ADAFLVS-SDPAKVKAAMG-- 246 (359)
Q Consensus 182 ~~g~~VlI~G~g~v-----------G~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~~v~~~-~~~~~~~~~~~-- 246 (359)
..-++|||+|+|+. +.-++..+|..|.+++.+..+++.... ++. +++++.. =..+.+.++..
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVst---d~d~aD~lYfePlt~e~v~~Ii~~E 81 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMT---DPEMADATYIEPIHWEVVRKIIEKE 81 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGG---CGGGSSEEECSCCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhc---ChhhcceeeeecCCHHHHHHHHHHh
Confidence 35578999998864 345566666779999999999987532 222 4555532 22345555543
Q ss_pred CccEEEECCCChhhHHHHHhcc
Q 018246 247 TMDYIIDTVSAVHSLAPLLGLL 268 (359)
Q Consensus 247 ~~d~vid~~g~~~~~~~~~~~l 268 (359)
.+|.++-..|+...++.+.+..
T Consensus 82 ~pd~il~~~GGQtalnla~~L~ 103 (127)
T d1a9xa3 82 RPDAVLPTMGGQTALNCALELE 103 (127)
T ss_dssp CCSEEECSSSHHHHHHHHHHHH
T ss_pred CcCCeEEEeeeehHhHHHHHHH
Confidence 7888888888776555555443
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.97 E-value=0.045 Score=39.54 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
+..++++|+|+|.+|+=+++..+.+|.+|+++.+++.
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 3457899999999999999999999999999998763
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.95 E-value=0.037 Score=45.76 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=57.8
Q ss_pred CCCCCCEEEEECC--chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHhcCCccEE
Q 018246 180 MTEPGKHLGVAGL--GGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAAMGTMDYI 251 (359)
Q Consensus 180 ~~~~g~~VlI~G~--g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~d~v 251 (359)
.+++|++||-+++ |.++ +.+|+.-+++|++++.+++..+.+.+ ..|.+ .++..+..+... ...+|.|
T Consensus 104 ~~~~g~~VlD~~aG~G~~~---l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~I 178 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLS---LPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRI 178 (260)
T ss_dssp HCCTTCEEEETTCTTTTTH---HHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEE
T ss_pred hcCCccEEEECcceEcHHH---HHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--CCCCCEE
Confidence 3579999999765 5554 45566544699999999998777632 23332 333332211100 1258866
Q ss_pred EE-CC-CChhhHHHHHhccccCCEEEEe
Q 018246 252 ID-TV-SAVHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 252 id-~~-g~~~~~~~~~~~l~~~G~~v~~ 277 (359)
+- -. .+...+..+++.+++||.+...
T Consensus 179 i~~~p~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 179 LMGYVVRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp EECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred EECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence 53 22 3444578899999999987554
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=92.88 E-value=0.18 Score=43.12 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=73.0
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHH-HHCCC-eEEEEeCChhhHHHHHHHcCC---cEEecCCCHHHHHHhcCCccE
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIG-KAFGL-KVTVISTSPKKESEAISKLGA---DAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la-~~~g~-~V~~v~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+...+ +..+++.|+|+|..+.+.++.. ...+. +|.+.++++++.+.+.+++.. -.+... +.+++...+.|+
T Consensus 121 ~~LA~-~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~---~s~~eav~~ADI 196 (340)
T d1x7da_ 121 QALAR-PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRA---SSVAEAVKGVDI 196 (340)
T ss_dssp HHHSC-TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEEC---SSHHHHHTTCSE
T ss_pred HHhhc-cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceec---CCHHHHHhcCCc
Confidence 44444 5567889999999998877755 46677 999999999987777665532 122222 224556678999
Q ss_pred EEECCCCh---hhHHHHHhccccCCEEEEecCCCC-CeeeCHH
Q 018246 251 IIDTVSAV---HSLAPLLGLLKVNGKLVTVGLPEK-PLEVPIF 289 (359)
Q Consensus 251 vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~ 289 (359)
++-|+.+. ..+. ...++|+-.+..+|.... ...++..
T Consensus 197 i~t~Tas~s~~Pv~~--~~~l~pG~hI~aiGs~~p~~~Eld~~ 237 (340)
T d1x7da_ 197 ITTVTADKAYATIIT--PDMLEPGMHLNAVGGDCPGKTELHAD 237 (340)
T ss_dssp EEECCCCSSEEEEEC--GGGCCTTCEEEECSCCBTTBEEECHH
T ss_pred eeeccccCCCCcccc--hhhcCCCCEEeecccchhhhhccCHH
Confidence 99877543 2233 357899999999987653 3455554
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=92.88 E-value=0.1 Score=43.52 Aligned_cols=97 Identities=19% Similarity=0.176 Sum_probs=64.0
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHHHc---CCcEEecCCCHHHHHHhcCCccEEEEC
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAISKL---GADAFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
.+.+..+||-+|+|. |..+..+++.. +.+|++++.+++.++.+.+.. +.+.-+...+...+ ...+.+|+|+..
T Consensus 24 ~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~ 101 (281)
T d2gh1a1 24 KITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICH 101 (281)
T ss_dssp CCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEE
T ss_pred ccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEe
Confidence 446778899999874 78888888865 469999999998877774332 32211111111111 122479999864
Q ss_pred CC-----Ch-hhHHHHHhccccCCEEEEec
Q 018246 255 VS-----AV-HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 255 ~g-----~~-~~~~~~~~~l~~~G~~v~~g 278 (359)
.. .+ ..+..+.+.|+|||.++..-
T Consensus 102 ~~l~~~~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 102 AFLLHMTTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp SCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 42 22 35788999999999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=92.75 E-value=0.087 Score=43.16 Aligned_cols=95 Identities=18% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHH---HHcCC-c--EEecCCCHHHHHHhcCCccEEE
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAI---SKLGA-D--AFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~---~~~g~-~--~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+.+..+||-+|+|. |..+..++++. +.++++++. ++..+.+. .+.|. + ..+..+ .......++|+|+
T Consensus 77 d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D---~~~~~~~~~D~v~ 151 (253)
T d1tw3a2 77 DWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGD---FFEPLPRKADAII 151 (253)
T ss_dssp CCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECC---TTSCCSSCEEEEE
T ss_pred CCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcccc---chhhcccchhhee
Confidence 347778999998763 77888888887 569999886 33333332 23342 1 111111 1111224789987
Q ss_pred ECCC-----Ch---hhHHHHHhccccCCEEEEecC
Q 018246 253 DTVS-----AV---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 253 d~~g-----~~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
-..- .+ ..+..+.+.|+|+|+++....
T Consensus 152 ~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 152 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred eccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 5322 12 246789999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.069 Score=45.69 Aligned_cols=91 Identities=21% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChh--hHHHHHHHcCC-c--EEecCCCHHHHHHhcCCccEEEECC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPK--KESEAISKLGA-D--AFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~--~~~~~~~~~g~-~--~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.+|++||-+|+|. |+++..+|+ .|+ +|++++.++. ..+...++.+. . .++..+. ..+......+|+|+...
T Consensus 37 ~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~-~~l~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 37 FKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKL-EDVHLPFPKVDIIISEW 113 (328)
T ss_dssp HTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSSSCEEEEEECC
T ss_pred CCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeeh-hhccCcccceeEEEEEe
Confidence 5789999999863 555554444 677 8999998863 12222234442 1 2222221 11111123799987632
Q ss_pred C-----Ch----hhHHHHHhccccCCEEE
Q 018246 256 S-----AV----HSLAPLLGLLKVNGKLV 275 (359)
Q Consensus 256 g-----~~----~~~~~~~~~l~~~G~~v 275 (359)
- .. ..+...-+.|+|+|+++
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 2 11 12344457899999875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=92.71 E-value=0.064 Score=45.59 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=30.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
.++|+|+|+|..|+.++..+...|.+|.++..++
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4689999999999999999998999999999774
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.71 E-value=0.053 Score=44.39 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=30.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKK 219 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~ 219 (359)
.|+|+|+|+.|++++..+...|.+|.++++++.-
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3889999999999999999999999999988653
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.13 Score=44.42 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=44.9
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-----hHHHHHHHcC---Cc-EE--ecCCCHHHHHHhcC--CccE
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-----KESEAISKLG---AD-AF--LVSSDPAKVKAAMG--TMDY 250 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-----~~~~~~~~~g---~~-~v--~~~~~~~~~~~~~~--~~d~ 250 (359)
+.|||.|+ |-+|...+..+...|.+|+++++... +.+.+..... .. .+ .|-.+.+.+.++.. .+|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 57889986 99999999999999999999998543 2222211111 11 11 13345555665554 6799
Q ss_pred EEECCCC
Q 018246 251 IIDTVSA 257 (359)
Q Consensus 251 vid~~g~ 257 (359)
|+.+++.
T Consensus 82 v~h~aa~ 88 (357)
T d1db3a_ 82 VYNLGAM 88 (357)
T ss_dssp EEECCCC
T ss_pred EEEeecc
Confidence 9998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.68 E-value=0.064 Score=40.87 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSP 217 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~ 217 (359)
.|++|+|+|+|..|+.++..++..+. +|+++.+.+
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 47899999999999999999888774 889888765
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.68 E-value=0.24 Score=37.59 Aligned_cols=96 Identities=17% Similarity=0.291 Sum_probs=61.6
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEEEEe-C--ChhhHHHHHHH---cC---CcE---------------EecCCCHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVIS-T--SPKKESEAISK---LG---ADA---------------FLVSSDPAK 240 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~~v~-~--~~~~~~~~~~~---~g---~~~---------------v~~~~~~~~ 240 (359)
+|.|.|-|-+|+++.+.+... ..+|+++- . +.+.+.++.+- .| .+- +...+++..
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~~ 81 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPSQ 81 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGGG
T ss_pred eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChHH
Confidence 578899999999999988765 44777664 2 34556666441 11 110 111222222
Q ss_pred HHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 241 VKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 241 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
+.+...++|+|+||+|.-.+.+.+...+..+.+-|.+..+.
T Consensus 82 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~ 122 (166)
T d2b4ro1 82 IPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP 122 (166)
T ss_dssp CCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred ccccccCCCEEEEecccccchhhhhhhhccCCCEEEEeccc
Confidence 22222389999999998777788889998887666665544
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.67 E-value=0.054 Score=44.01 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=29.1
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
|+|+|+|+.|++++..+...|.+|+++++++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 78999999999999989899999999998754
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=92.58 E-value=0.23 Score=37.75 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=59.7
Q ss_pred EEEEECCchHHHHHHHHHHHC---CCeEEEEeC--ChhhHHHHHHH---cC---Cc------E---------EecCCCHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF---GLKVTVIST--SPKKESEAISK---LG---AD------A---------FLVSSDPA 239 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~---g~~V~~v~~--~~~~~~~~~~~---~g---~~------~---------v~~~~~~~ 239 (359)
+|.|.|-|-+|+.+.+.+... ..+|+++-. +.+.+.++++- .| .+ . +.+.++++
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p~ 81 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDPS 81 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCChh
Confidence 688999999999999987643 357666542 33445555331 11 11 0 11112222
Q ss_pred HHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 240 KVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 240 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+.+..-++|+|+||+|.-.+.+.+...+..|-+-|.+..+.
T Consensus 82 ~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~ 123 (169)
T d1hdgo1 82 KLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPA 123 (169)
T ss_dssp GSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred hCCccccCCCEEEEecceeccccchhhhccCCCceEEEeccc
Confidence 222222379999999998777888888998886666665554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.55 E-value=0.13 Score=43.07 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCC---------cEEecCCCHHHHHHhcCCccEEE-
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGA---------DAFLVSSDPAKVKAAMGTMDYII- 252 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~vi- 252 (359)
-++|||+|.|. |..+-.++++.+. +|+++.-+++-.+.+.+-++. -.++..+....+++....||+++
T Consensus 90 pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 90 PKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp CCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 36899987643 3345577777665 899999998877766332321 13333333345555445899997
Q ss_pred ECCC----------ChhhHHHHHhccccCCEEEEec
Q 018246 253 DTVS----------AVHSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 253 d~~g----------~~~~~~~~~~~l~~~G~~v~~g 278 (359)
|+.. +...+..+.++|+++|.++.-.
T Consensus 169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 4322 1234678999999999998754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.53 E-value=0.08 Score=38.03 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=31.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
.+++++|+|+|.+|+-++..+...|.+|+++.+++
T Consensus 31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 31 NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 45789999999999999999999999999999765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.48 E-value=0.32 Score=38.00 Aligned_cols=76 Identities=25% Similarity=0.289 Sum_probs=49.1
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEE
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+...+. -.|++||-+|+|. |.+++. |...|+ +|+.++.+++..+.+.+....-.++..+ +.++.+.+|+|+
T Consensus 40 ~~~~~~d-l~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D----~~~l~~~fD~Vi 112 (197)
T d1ne2a_ 40 EIYNDGN-IGGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD----VSEISGKYDTWI 112 (197)
T ss_dssp HHHHHTS-SBTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC----GGGCCCCEEEEE
T ss_pred HHHHcCC-CCCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe----hhhcCCcceEEE
Confidence 3445566 4689999998753 444443 444676 8999999999888884444433444332 234456899998
Q ss_pred ECCC
Q 018246 253 DTVS 256 (359)
Q Consensus 253 d~~g 256 (359)
-...
T Consensus 113 ~NPP 116 (197)
T d1ne2a_ 113 MNPP 116 (197)
T ss_dssp ECCC
T ss_pred eCcc
Confidence 6544
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.08 Score=44.73 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=31.8
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
++..+|+|+|+|..||.|+..++..|.+|.++..++
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 455679999999999999999999999999998653
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.42 E-value=0.091 Score=39.53 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=47.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc-------CCcE-EecCCCHHHHHHhcCCccEEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL-------GADA-FLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~-------g~~~-v~~~~~~~~~~~~~~~~d~vi 252 (359)
++..+|.|+|+|.+|...+.++...+. +++.++.++++.+....++ +... +....+ ......+.|+|+
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~adiVv 81 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYS---YEAALTGADCVI 81 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECS---HHHHHTTCSEEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCc---hhhhhcCCCeEE
Confidence 556789999999999988887777776 8999998887654432322 2111 111111 223345789999
Q ss_pred ECCCC
Q 018246 253 DTVSA 257 (359)
Q Consensus 253 d~~g~ 257 (359)
-+.|.
T Consensus 82 itag~ 86 (154)
T d1pzga1 82 VTAGL 86 (154)
T ss_dssp ECCSC
T ss_pred Eeccc
Confidence 88864
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=92.37 E-value=0.062 Score=41.36 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=28.0
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
.|+|+|+|+.|+.++..|.+.|.+|.++.+.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3789999999999999999999999999853
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=92.31 E-value=0.37 Score=40.70 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEC--CchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc---CC---c-EEecCCCHHHHHHhc---C
Q 018246 180 MTEPGKHLGVAG--LGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL---GA---D-AFLVSSDPAKVKAAM---G 246 (359)
Q Consensus 180 ~~~~g~~VlI~G--~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~---g~---~-~v~~~~~~~~~~~~~---~ 246 (359)
.+.+|++||-+. .|+.++.+ ...|+ +|+.++.++...+.+.+.+ |. . .++..+..+.++... .
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~a----a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~ 216 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAA----AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL 216 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHH----HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred HhhCCCceeecCCCCcHHHHHH----HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence 346899999874 46655432 24687 8999999998777664332 22 1 234344345555442 3
Q ss_pred CccEEEECCCC---------------hhhHHHHHhccccCCEEEEecCC
Q 018246 247 TMDYIIDTVSA---------------VHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 247 ~~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.||+|+--... ...+..++++|+|+|.++.+...
T Consensus 217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 79999853221 12356788999999999987543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.38 Score=38.88 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=29.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS 216 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~ 216 (359)
.+.+|+|+|+|++|-.++..+...|. +++++|..
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 34689999999999999999999999 88888843
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.25 E-value=0.061 Score=43.60 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=28.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~ 217 (359)
.|+|+|+|+.|+.++..+++.|. +|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 48999999999999999999997 699998764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.25 E-value=0.14 Score=43.36 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=46.6
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChh-----hHHHH---HHHcC--CcEE--ecCCCHHHHHHhc--CCcc
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPK-----KESEA---ISKLG--ADAF--LVSSDPAKVKAAM--GTMD 249 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~-----~~~~~---~~~~g--~~~v--~~~~~~~~~~~~~--~~~d 249 (359)
+++||+|+ |.+|...+..+...|.+|+++++... +.+.+ ..... ...+ .|..+.+.+.... .++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 57899987 99999999999999999999997432 21111 01111 1112 2334444444443 3889
Q ss_pred EEEECCCC
Q 018246 250 YIIDTVSA 257 (359)
Q Consensus 250 ~vid~~g~ 257 (359)
+|+.+++.
T Consensus 82 ~Vih~Aa~ 89 (339)
T d1n7ha_ 82 EVYNLAAQ 89 (339)
T ss_dssp EEEECCSC
T ss_pred hhhhcccc
Confidence 99998874
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.15 E-value=0.069 Score=42.79 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=28.8
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|..|+.++..+...|.+|.++.+++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 7889999999999999999999999999875
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.042 Score=42.83 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=30.8
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
++..|+|+|+|+.|+.++..+.+.|.+|+++.+.+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 45679999999999999999999999999997643
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=91.93 E-value=0.06 Score=44.61 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=29.1
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
+|+|+|+|..|+.++..+.+.|.+|+++.+++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48999999999999999999999999999763
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.91 E-value=0.065 Score=42.55 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=28.3
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|+.|+.++..+...|.+|+++++.+
T Consensus 6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 7889999999999999999999999998753
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=91.82 E-value=0.35 Score=36.75 Aligned_cols=96 Identities=15% Similarity=0.282 Sum_probs=58.7
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEEEEeC--ChhhHHHHHHH---cC---Cc---------------EEecCCCHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVIST--SPKKESEAISK---LG---AD---------------AFLVSSDPAKV 241 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~--~~~~~~~~~~~---~g---~~---------------~v~~~~~~~~~ 241 (359)
+|.|.|-|-+|+++.+.+... ..+|+++-. +.+.+.++.+- .| .+ .+.+.+++..+
T Consensus 3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~i 82 (171)
T d3cmco1 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENL 82 (171)
T ss_dssp EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGGC
T ss_pred EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHHc
Confidence 578889999999999888655 346666642 22334444331 11 00 01111222222
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+-..++|+|+||+|.-.+.+.+...|..+-+-|.+..+.
T Consensus 83 ~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~ 122 (171)
T d3cmco1 83 AWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPA 122 (171)
T ss_dssp CTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred cccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccc
Confidence 2222379999999998777888888898887666665544
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.81 E-value=0.055 Score=41.50 Aligned_cols=99 Identities=14% Similarity=0.029 Sum_probs=64.3
Q ss_pred CCCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHH--HHHHHcCCcEE--ecCCCHHHHHHhcCCccEEEECCC
Q 018246 182 EPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKES--EAISKLGADAF--LVSSDPAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 182 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~--~~~~~~g~~~v--~~~~~~~~~~~~~~~~d~vid~~g 256 (359)
-.|++|+|+|- ..+|.=.+.++.+.|++|+.......... ......-...+ +.....+.++......|+++.++|
T Consensus 27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG 106 (171)
T d1edza1 27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVP 106 (171)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEccC
Confidence 47899999996 68899888888889999988765422100 00000011111 112224556666667999999999
Q ss_pred ChhhHHHHHhccccCCEEEEecCCC
Q 018246 257 AVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 257 ~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+. +.---+.+++|..++++|...
T Consensus 107 ~p~-~~i~~d~ik~GavvIDvGi~~ 130 (171)
T d1edza1 107 SEN-YKFPTEYIKEGAVCINFACTK 130 (171)
T ss_dssp CTT-CCBCTTTSCTTEEEEECSSSC
T ss_pred CCc-cccChhhcccCceEeeccccc
Confidence 876 322346788999999998754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=91.78 E-value=0.35 Score=41.16 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=50.8
Q ss_pred CCCEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHH-HHHc-CCcEEe-cCCC-HHHHHHhcCCccEEEECCC
Q 018246 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEA-ISKL-GADAFL-VSSD-PAKVKAAMGTMDYIIDTVS 256 (359)
Q Consensus 183 ~g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~-~~~~-g~~~v~-~~~~-~~~~~~~~~~~d~vid~~g 256 (359)
..++|||+|+ |.+|...+..+...|.+|+++.|+.++.... .... |++.+. |..+ .+.+..+..+.|.++....
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~ 80 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 80 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence 4578999986 9999999999999999999999977653221 1232 333322 3233 4456666778888876554
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=91.74 E-value=1.7 Score=35.73 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=63.9
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC---ChhhHHHHHHHcCCcEEecCCCH---------------
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST---SPKKESEAISKLGADAFLVSSDP--------------- 238 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~---~~~~~~~~~~~~g~~~v~~~~~~--------------- 238 (359)
..+.++++.+|+...+|..|++++..|+.+|.+++++.. ++.+.+.+ +.+|++-++...+.
T Consensus 53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~-~~~GA~v~~v~~~~~~~~a~~~~~~~~~~ 131 (292)
T d2bhsa1 53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAM-RAYGAELILVTKEQGMEGARDLALEMANR 131 (292)
T ss_dssp HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHH-HHTTCEEEEECTTTHHHHHHHHHHHHHHH
T ss_pred HhCCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHH-HHhCCCcceeecccchHHHHHHHhhcccc
Confidence 345556677666667899999999999999996555442 34445444 88998754322211
Q ss_pred ------------H-H-----------HHHhcCCccEEEECCCChhhHH---HHHhccccCCEEEEec
Q 018246 239 ------------A-K-----------VKAAMGTMDYIIDTVSAVHSLA---PLLGLLKVNGKLVTVG 278 (359)
Q Consensus 239 ------------~-~-----------~~~~~~~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~~g 278 (359)
. . ..++.+.+|.++.++|+..++. ..++...+..+++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve 198 (292)
T d2bhsa1 132 GEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ 198 (292)
T ss_dssp TSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred ccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence 0 0 0011125899999888765444 4555566777877663
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.14 Score=36.48 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCEEEEECCchH-----------HHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcC-CcEEecC-CCHHHHHHhcC--Cc
Q 018246 184 GKHLGVAGLGGL-----------GHVAVKIGKAFGLKVTVISTSPKKESEAISKLG-ADAFLVS-SDPAKVKAAMG--TM 248 (359)
Q Consensus 184 g~~VlI~G~g~v-----------G~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g-~~~v~~~-~~~~~~~~~~~--~~ 248 (359)
.++|||+|+|+. +.-++..+|..|.+++.+..+++... .++. +++++.. =..+.+..+.. .+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs---td~d~aD~lYfeplt~e~v~~Ii~~E~p 80 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS---TDYDTSDRLYFEPVTLEDVLEIVRIEKP 80 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST---TSTTSSSEEECCCCSHHHHHHHHHHHCC
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh---cChhhcCceEEccCCHHHHHHHHHHhCC
Confidence 468999998864 45566667788999999999987653 1222 4555432 22344444332 66
Q ss_pred cEEEECCCChhhHHH
Q 018246 249 DYIIDTVSAVHSLAP 263 (359)
Q Consensus 249 d~vid~~g~~~~~~~ 263 (359)
|.|+-..|+...++.
T Consensus 81 ~~ii~~~GGQtalnl 95 (121)
T d1a9xa4 81 KGVIVQYGGQTPLKL 95 (121)
T ss_dssp SEEECSSSTHHHHTT
T ss_pred CEEEeehhhhhHHHH
Confidence 777766666553433
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.59 E-value=0.081 Score=40.59 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=27.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEe
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS 214 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~ 214 (359)
.+++|+|+|+|++|+-++..++++|.+|.++.
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~ 33 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRL 33 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence 57899999999999999999999998655543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=91.30 E-value=1.5 Score=32.03 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=46.4
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL-------GADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.+|.|+|+|.+|..++..+...+. ++..++.++++.+-...++ +...+....+. +...+.|+|+-+.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~----~~~~daDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP----EICRDADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG----GGGTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH----HHhhCCcEEEEec
Confidence 358888999999999888887776 8999998887643221211 12333322221 2234789999999
Q ss_pred CCh
Q 018246 256 SAV 258 (359)
Q Consensus 256 g~~ 258 (359)
|.+
T Consensus 78 G~~ 80 (143)
T d1llda1 78 GPR 80 (143)
T ss_dssp CCC
T ss_pred ccc
Confidence 863
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.1 Score=44.47 Aligned_cols=72 Identities=11% Similarity=0.005 Sum_probs=46.7
Q ss_pred EEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcCCcEEe-cCCCH-HHHHHhcCCccEEEECCCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLGADAFL-VSSDP-AKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g~~~v~-~~~~~-~~~~~~~~~~d~vid~~g~ 257 (359)
+|||+|+ |.+|...++.+...| .+|+++++...+...+.+.-..+.+. |-++. +..+....++|+|+.+++-
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~ 77 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI 77 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence 5899986 999999998887888 48999987665544331211223222 22222 3333344589999998874
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.28 E-value=0.094 Score=41.53 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=28.0
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
|+|+|+|+.|+.++..|..+|.+|.++.+.
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 788999999999999999999999999875
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.04 E-value=0.11 Score=41.40 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=28.2
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|+.|+.|+..|...|.+|.+++..+
T Consensus 8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~ 38 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG 38 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 7889999999999999999999999998654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.52 Score=39.06 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=58.4
Q ss_pred CCCCCEEEEECC--chHHHHHHHHHHHCCCeEEEEeCChhhHHHH---HHHcCCc-EEecCCCHHHHHHh-cCCccEEE-
Q 018246 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFGLKVTVISTSPKKESEA---ISKLGAD-AFLVSSDPAKVKAA-MGTMDYII- 252 (359)
Q Consensus 181 ~~~g~~VlI~G~--g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~---~~~~g~~-~v~~~~~~~~~~~~-~~~~d~vi- 252 (359)
.++|++||-.-+ |+-...++++ ..+.+|++.+.++.|.+.+ .+++|.. .++...+....... ...||.|+
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l--~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~ 177 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEV--APEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 177 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHH--CTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhh--hhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEE
Confidence 389999998743 5444333333 2235899999999987655 3467754 33333322222222 24799886
Q ss_pred E--CCCCh-------------------------hhHHHHHhccccCCEEEEe
Q 018246 253 D--TVSAV-------------------------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 253 d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 277 (359)
| |+|.. ..+..+++.+++||++|..
T Consensus 178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4 55542 2467788899999988865
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.94 E-value=1.7 Score=31.53 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=43.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcC------CcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLG------ADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g------~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
+|.|+|+|.+|...+..+...+. ++..++.++++.+-...++- ....+...+. +...+.|+|+-++|.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~----~~~~~adivvitag~ 77 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY----ADLKGSDVVIVAAGV 77 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG----GGGTTCSEEEECCCC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH----HHhcCCCEEEEeccc
Confidence 47788999999988777766664 89999988876543322211 1111112211 223589999999875
Q ss_pred h
Q 018246 258 V 258 (359)
Q Consensus 258 ~ 258 (359)
+
T Consensus 78 ~ 78 (140)
T d1a5za1 78 P 78 (140)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.92 E-value=0.12 Score=41.36 Aligned_cols=31 Identities=29% Similarity=0.246 Sum_probs=28.5
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|+.|+.++..+...|.+|.++.+.+
T Consensus 9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 7888999999999999999999999998754
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=1.3 Score=37.74 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=65.7
Q ss_pred hcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEe---CChhhHHHHHHHcCCcEEecCCC--------H-------
Q 018246 177 YYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS---TSPKKESEAISKLGADAFLVSSD--------P------- 238 (359)
Q Consensus 177 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~---~~~~~~~~~~~~~g~~~v~~~~~--------~------- 238 (359)
..+.+++++.|+...+|..|.+.+..|+.+|.+.+++. .++++.+.+ +.+|++-+..... .
T Consensus 90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i-~~~GA~vv~v~~~~~~~~~~~~~~~~~~~ 168 (355)
T d1jbqa_ 90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVL-RALGAEIVRTPTNARFDSPESHVGVAWRL 168 (355)
T ss_dssp HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHH-HHTTCEEEECCC-------CCHHHHHHHH
T ss_pred HcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHH-HhcCCeEEEecccccchhhhhhhhHHHHH
Confidence 44555677777767789999999999999999666655 344566666 8899875432100 0
Q ss_pred ----------------------------HHHHHhcCCccEEEECCCChhhHH---HHHhccccCCEEEEec
Q 018246 239 ----------------------------AKVKAAMGTMDYIIDTVSAVHSLA---PLLGLLKVNGKLVTVG 278 (359)
Q Consensus 239 ----------------------------~~~~~~~~~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~~g 278 (359)
+...++...+|.++.++|+..++. ..++...+.-+++.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~ve 239 (355)
T d1jbqa_ 169 KNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVD 239 (355)
T ss_dssp HHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeec
Confidence 001112236899999999765443 4445556677887764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=90.81 E-value=0.76 Score=34.74 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCCCCEEEEECC--chHHHHHHHHHHHCCCeEEEEeCChhhHHHHH---HHcCC-cEEecCCCHHHHHH---hcCCccEE
Q 018246 181 TEPGKHLGVAGL--GGLGHVAVKIGKAFGLKVTVISTSPKKESEAI---SKLGA-DAFLVSSDPAKVKA---AMGTMDYI 251 (359)
Q Consensus 181 ~~~g~~VlI~G~--g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~---~~~g~-~~v~~~~~~~~~~~---~~~~~d~v 251 (359)
+.+|.+||-+++ |.+|+ . |...|++|+.++.+++..+.+. +.++. ..+...+....... ....||+|
T Consensus 39 ~~~g~~vLDl~~G~G~~~i---~-a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I 114 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGL---E-AASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA 114 (171)
T ss_dssp CTTCCEEEEETCSSCHHHH---H-HHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEeccccchhhh---h-hhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence 367889998754 66554 3 3346899999999998776552 34564 34544433322222 22479999
Q ss_pred EECC----CChhhHHHHH--hccccCCEEEEe
Q 018246 252 IDTV----SAVHSLAPLL--GLLKVNGKLVTV 277 (359)
Q Consensus 252 id~~----g~~~~~~~~~--~~l~~~G~~v~~ 277 (359)
|-.. +-...+..+. ..++++|.++.-
T Consensus 115 f~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred EEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence 8532 2222244333 358889987754
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.80 E-value=0.12 Score=43.45 Aligned_cols=33 Identities=30% Similarity=0.277 Sum_probs=29.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
.|+|+|+|+.|++++..++..|.+|.+.++.++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 488899999999999999999999999997653
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=90.76 E-value=1.5 Score=34.89 Aligned_cols=129 Identities=10% Similarity=0.080 Sum_probs=73.8
Q ss_pred EEEEECCch----HHHHHHHHHHHC--CCeEEE-EeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 186 HLGVAGLGG----LGHVAVKIGKAF--GLKVTV-ISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 186 ~VlI~G~g~----vG~~a~~la~~~--g~~V~~-v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
+|.|+|.|. ++...+...+.. ++++++ .+++.++.+.+.++++....-.+++.+.+.. ...+|+|+.++...
T Consensus 18 rvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~iD~V~i~tp~~ 96 (237)
T d2nvwa1 18 RVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQ-YKDIDMIVVSVKVP 96 (237)
T ss_dssp EEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHH-CTTCSEEEECSCHH
T ss_pred EEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccc-ccccceeeccCCCc
Confidence 678888765 444445555544 467775 6677778777778888543322333322211 24799999999876
Q ss_pred hhHHHHHhccccC-----CEEEEecCCCCCeeeCHH------HHH-hc-CcEE-EEeecCCHHHHHHHHHHHHh
Q 018246 259 HSLAPLLGLLKVN-----GKLVTVGLPEKPLEVPIF------ALV-GA-RRLV-GGSNVGGMKETQEMLDFCAK 318 (359)
Q Consensus 259 ~~~~~~~~~l~~~-----G~~v~~g~~~~~~~~~~~------~~~-~k-~~~i-~g~~~~~~~~~~~~~~~l~~ 318 (359)
.-.+.+..+|..| ++=|++.- ++..+.. .+. .+ ++.+ .++.......+..+.+++++
T Consensus 97 ~h~~~~~~al~aG~~~~~~k~V~~EK---Pla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~~~~~k~~i~~ 167 (237)
T d2nvwa1 97 EHYEVVKNILEHSSQNLNLRYLYVEW---ALAASVQQAEELYSISQQRANLQTIICLQGRYNSVVGNILRIYES 167 (237)
T ss_dssp HHHHHHHHHHHHSSSCSSCCEEEEES---SSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhcccccCCceEEEec---cccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCHHHHHHHHHHHh
Confidence 6567777777755 35566633 2333322 222 23 2333 45554444556666666654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.74 E-value=0.13 Score=40.72 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=28.1
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|+.|+.++..|.+.|.+|.++.+..
T Consensus 6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 7788999999999999999999999998653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.60 E-value=0.1 Score=41.53 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=28.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
.|+|+|+|+.|+.++..|..+|.+|.++.+.
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3788999999999999999999999999865
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.51 E-value=0.48 Score=40.00 Aligned_cols=105 Identities=14% Similarity=0.207 Sum_probs=70.1
Q ss_pred HhcCCCCCCCEEEEECCchHHHHHHHHHHH-CCC-eEEEEeCChhhHHHHHHH---cCCcEEecCCCHHHHHHhcCCccE
Q 018246 176 KYYGMTEPGKHLGVAGLGGLGHVAVKIGKA-FGL-KVTVISTSPKKESEAISK---LGADAFLVSSDPAKVKAAMGTMDY 250 (359)
Q Consensus 176 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~-~V~~v~~~~~~~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~d~ 250 (359)
+...+ +..+++.|+|+|..+...++...+ ... +|.+.++++++.+.+.+. .+.....+ .. +...+.|+
T Consensus 118 ~~la~-~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~--~~----~a~~~aDi 190 (320)
T d1omoa_ 118 KYLAR-KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQ--PA----EEASRCDV 190 (320)
T ss_dssp HHHSC-TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEEC--CH----HHHTSSSE
T ss_pred HHhcc-CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccc--hh----hhhccccE
Confidence 34444 455788999999999887777664 455 999999999987666443 33333322 11 22357999
Q ss_pred EEECCCChh-hHHHHHhccccCCEEEEecCCCC-CeeeCHH
Q 018246 251 IIDTVSAVH-SLAPLLGLLKVNGKLVTVGLPEK-PLEVPIF 289 (359)
Q Consensus 251 vid~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~ 289 (359)
|+-|+.+.. .+. .+.++++-.+..+|.... ...++..
T Consensus 191 V~taT~s~~P~~~--~~~l~~G~hv~~iGs~~p~~~Eld~~ 229 (320)
T d1omoa_ 191 LVTTTPSRKPVVK--AEWVEEGTHINAIGADGPGKQELDVE 229 (320)
T ss_dssp EEECCCCSSCCBC--GGGCCTTCEEEECSCCSTTCCCBCHH
T ss_pred EEEeccCcccccc--hhhcCCCCeEeecCCccccccccCHH
Confidence 999887643 232 246899999999987653 3345544
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.48 E-value=0.1 Score=44.51 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=26.8
Q ss_pred EEEEECCchHHHHHHHHHH-----HCCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGK-----AFGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~-----~~g~~V~~v~~~~ 217 (359)
-|+|+|+|++|++++.++. ..|.+|+++.+.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence 3899999999999887773 5799999999765
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=90.47 E-value=0.14 Score=42.66 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=32.3
Q ss_pred CCCEEEEECC-c--hHHHHHHHHHHHCCCeEEEEeCChhh
Q 018246 183 PGKHLGVAGL-G--GLGHVAVKIGKAFGLKVTVISTSPKK 219 (359)
Q Consensus 183 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~V~~v~~~~~~ 219 (359)
.|+++||.|+ | ++|++.++.+...|++|++..+++..
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~ 46 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL 46 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence 6889999996 4 89999999999999999999877543
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.36 E-value=0.13 Score=42.14 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=28.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
.|+|+|+|.+|++++..+...|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 48999999999999888888999999999764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.11 Score=43.72 Aligned_cols=32 Identities=28% Similarity=0.276 Sum_probs=29.0
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
.|+|+|+|..|+.++..+...|.+|.++..++
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 48899999999999999998899999999764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.21 E-value=0.24 Score=40.12 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
-.|.+|+|-|.|.+|..+++++...|++|++++.+
T Consensus 29 l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 29 IEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence 47899999999999999999999999999887743
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.18 E-value=0.14 Score=39.81 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=28.5
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
..|+|+|+|+.|+.++..+...|.+|+++++.
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 57999999999999999999999999998744
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=90.17 E-value=0.11 Score=39.61 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=55.2
Q ss_pred EEEEECCchHHHHHHHHHHHC-CCeEEEEe-CChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVIS-TSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~-g~~V~~v~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|+|.|.+|...+...+.. +++++++. +++++. ....+..+.+ ...+...+|+|+.|++...-.+.
T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-------~~~~~~~~~~---~~~~~~~~D~Vvi~tp~~~h~~~ 74 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-------TKTPVFDVAD---VDKHADDVDVLFLCMGSATDIPE 74 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-------SSSCEEEGGG---GGGTTTTCSEEEECSCTTTHHHH
T ss_pred eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-------cccccccchh---hhhhccccceEEEeCCCcccHHH
Confidence 588999999999888888766 55666544 443321 1111222221 22334579999999987765788
Q ss_pred HHhccccCCEEEEe
Q 018246 264 LLGLLKVNGKLVTV 277 (359)
Q Consensus 264 ~~~~l~~~G~~v~~ 277 (359)
+.++|+.|-.++++
T Consensus 75 a~~aL~aG~~vv~~ 88 (170)
T d1f06a1 75 QAPKFAQFACTVDT 88 (170)
T ss_dssp HHHHHTTTSEEECC
T ss_pred HHHHHHCCCcEEEe
Confidence 99999999887754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=90.16 E-value=0.23 Score=40.57 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHH---HHcCC-c--EEecCCCHHHHHHhcCCccEEEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAI---SKLGA-D--AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~---~~~g~-~--~v~~~~~~~~~~~~~~~~d~vid 253 (359)
+.+..+||-+|+|. |..+..++++. +.++++++. ++-.+.+. ++.|. + .+...+ .......++|+++-
T Consensus 79 ~~~~~~vlDvG~G~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d---~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 79 WSAVRHVLDVGGGN-GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGD---FFKPLPVTADVVLL 153 (256)
T ss_dssp CTTCCEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC---TTSCCSCCEEEEEE
T ss_pred CccCCEEEEECCCC-CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee---ccccccccchhhhc
Confidence 46778898888754 67888999887 669999996 44443332 33342 2 112111 11122347898874
Q ss_pred CC-----CCh---hhHHHHHhccccCCEEEEecC
Q 018246 254 TV-----SAV---HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 254 ~~-----g~~---~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.- +.+ ..+..+.+.|+|+|+++.+..
T Consensus 154 ~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 32 212 246788999999999998754
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=90.14 E-value=0.57 Score=35.57 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=56.3
Q ss_pred EEEEECCchHHHHHHHHHHHCC---CeEEEEeCC--hhhHHHHHHH---cC---CcE--------Ee--------cCCCH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG---LKVTVISTS--PKKESEAISK---LG---ADA--------FL--------VSSDP 238 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g---~~V~~v~~~--~~~~~~~~~~---~g---~~~--------v~--------~~~~~ 238 (359)
+|.|.|-|-+|+++.+.+.... .+|+++-.. .+...++.+- .| .+- ++ +.+++
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~p 81 (172)
T d1rm4a1 2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNP 81 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCG
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCCh
Confidence 5788999999999999776543 355554422 2333444221 11 110 11 11112
Q ss_pred HHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 239 AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 239 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
..+.+...++|+|+||+|.-...+.+...|..|-+-|.+..+.
T Consensus 82 ~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~ 124 (172)
T d1rm4a1 82 VNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG 124 (172)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred HHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence 2222222379999999998666788888898886555555544
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.13 E-value=0.14 Score=43.39 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=28.3
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|..|+.++..+++.|.+|+++.+++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7899999999999999999999999998653
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.16 Score=40.10 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.7
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
|+|+|+|+.|+.++..|.+.|.+|.++...
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 778899999999999999999999999864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.95 E-value=1.3 Score=35.05 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh------cCCc
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA------MGTM 248 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~------~~~~ 248 (359)
.-++||=+|.+ +|..++.+|+.+ +.+|+.++.+++..+.+.+ +.|.. .++.....+.+.++ .+.|
T Consensus 59 ~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 59 NAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp TCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred CCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 34688888863 366777777766 4599999999987766633 34542 33334444555555 2379
Q ss_pred cEEEECCCCh---hhHHHHHhccccCCEEEEec
Q 018246 249 DYIIDTVSAV---HSLAPLLGLLKVNGKLVTVG 278 (359)
Q Consensus 249 d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g 278 (359)
|.||--.... ..++.+++.|++||.++.=.
T Consensus 138 D~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 138 DFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp SEEEECSCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eEEEeccchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 9997544332 24678999999999988753
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=89.91 E-value=0.15 Score=42.75 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=28.5
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|..|++++.-|...|++|+++.+.+
T Consensus 19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 19 VVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 8999999999999999999999999999754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.89 E-value=0.79 Score=39.52 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=61.0
Q ss_pred ECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc---CCc----------------EEecCCCHH-HHHHhcCCc
Q 018246 190 AGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL---GAD----------------AFLVSSDPA-KVKAAMGTM 248 (359)
Q Consensus 190 ~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~---g~~----------------~v~~~~~~~-~~~~~~~~~ 248 (359)
.+-++.|...++.|+..|+ +|++.+.+++..+.+.+.+ +.. ..++..+.. .+......|
T Consensus 51 D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~f 130 (375)
T d2dula1 51 DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYF 130 (375)
T ss_dssp ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCE
T ss_pred EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhhcCcC
Confidence 3556668888899999998 8999999999887774322 111 111222222 222223479
Q ss_pred cEE-EECCCChh-hHHHHHhccccCCEEEEecC
Q 018246 249 DYI-IDTVSAVH-SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 249 d~v-id~~g~~~-~~~~~~~~l~~~G~~v~~g~ 279 (359)
|+| +|.-|++. .++.++++++.+|.+.....
T Consensus 131 DvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 131 HFIDLDPFGSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp EEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcccCCCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence 987 78888743 57899999999998877643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=89.87 E-value=2.2 Score=33.13 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=64.9
Q ss_pred hhhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHH---HHcCCcE--EecCCCHHHHHH
Q 018246 170 TVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAI---SKLGADA--FLVSSDPAKVKA 243 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~---~~~g~~~--v~~~~~~~~~~~ 243 (359)
.-|..++.. .+..||=+|+|. |..++.+|+.. ...+++++.++.....+. ++.+.+. ++..+..+....
T Consensus 20 ~~w~~~F~~----~~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~ 94 (204)
T d2fcaa1 20 GKWNTVFGN----DNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDV 94 (204)
T ss_dssp TCHHHHHTS----CCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHH
T ss_pred hHHHHHcCC----CCceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcc
Confidence 335555542 233556678865 77888888876 569999999998876663 3455442 232222222222
Q ss_pred hc-CCccEEEECCCC--------------hhhHHHHHhccccCCEEEEe
Q 018246 244 AM-GTMDYIIDTVSA--------------VHSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 244 ~~-~~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~ 277 (359)
+. +.+|.|+-.... +..++.+.+.|+|||.+...
T Consensus 95 ~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 95 FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred cCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 22 368877654433 23578889999999998775
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.59 E-value=0.21 Score=39.20 Aligned_cols=67 Identities=15% Similarity=0.007 Sum_probs=42.5
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcCCcEEecCCCH-HHHHHhcCCccEEEECCCCh
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLGADAFLVSSDP-AKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~-~~~~~~~~~~d~vid~~g~~ 258 (359)
++|||+|+ |.+|...+..+...|. +|++..|++... ......+..+. +....+...+|.|+.|+|..
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------cccccccccchhhhhhccccchheeeeeeeee
Confidence 68999987 9999999999888886 677766553210 01111112222 22233334789999998753
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.055 Score=44.73 Aligned_cols=54 Identities=15% Similarity=-0.027 Sum_probs=36.9
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHc
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKL 227 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~ 227 (359)
++-++..+. ..|.+||-+|+|+ |...+..+.....+|++++-++.-++.+.+.+
T Consensus 44 ~~~~f~~g~-~~g~~vLDiGcG~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~ 97 (263)
T d2g72a1 44 LAQTFATGE-VSGRTLIDIGSGP-TVYQLLSACSHFEDITMTDFLEVNRQELGRWL 97 (263)
T ss_dssp HHHHHHTSC-SCCSEEEEETCTT-CCGGGTTGGGGCSEEEEECSCHHHHHHHHHHH
T ss_pred HHHHcCCCC-CCCcEEEEeccCC-CHHHHHHhcccCCeEEEEeCCHHHHHHHHHHH
Confidence 444445565 6789999999876 44443444444569999999999888774443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.40 E-value=1.7 Score=31.30 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=42.6
Q ss_pred EEEEECC-chHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|.|+ |-+|...++..... +.++.......+..... . ..++|+++|.+.... ...
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~-~-------------------~~~~DvvIDFS~p~~-~~~ 59 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL-T-------------------DGNTEVVIDFTHPDV-VMG 59 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHH-H-------------------TTTCSEEEECCCTTT-HHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhh-c-------------------cccCCEEEEcccHHH-HHH
Confidence 5889996 99999988887654 56666543222211111 1 135677888776555 434
Q ss_pred HHhccccCCEEEEecCCC
Q 018246 264 LLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~ 281 (359)
.++.....|.=+.+|.+.
T Consensus 60 ~~~~~~~~~~~~ViGTTG 77 (135)
T d1yl7a1 60 NLEFLIDNGIHAVVGTTG 77 (135)
T ss_dssp HHHHHHHTTCEEEECCCC
T ss_pred HHHHHHhcCCCEEEeccc
Confidence 444444444444555543
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.30 E-value=0.22 Score=41.80 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=46.1
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhh--HHHHHHHcCCc-----EEecCCCHHHHHHhcC--CccEEEEC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKK--ESEAISKLGAD-----AFLVSSDPAKVKAAMG--TMDYIIDT 254 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~--~~~~~~~~g~~-----~v~~~~~~~~~~~~~~--~~d~vid~ 254 (359)
++|||+|+ |.+|..++..+...|.+|+++++.... ...+ +.++.. .-.|-.+...+..... ..++++.+
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 79 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 79 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHH-HHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence 47999987 999999999998889999999976532 1222 333421 2234455554444332 56677766
Q ss_pred CC
Q 018246 255 VS 256 (359)
Q Consensus 255 ~g 256 (359)
..
T Consensus 80 a~ 81 (321)
T d1rpna_ 80 AA 81 (321)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=1.8 Score=36.27 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=66.3
Q ss_pred hhhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC---ChhhHHHHHHHcCCcEEecCCCHHH-------
Q 018246 171 VYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST---SPKKESEAISKLGADAFLVSSDPAK------- 240 (359)
Q Consensus 171 a~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~---~~~~~~~~~~~~g~~~v~~~~~~~~------- 240 (359)
|++.+.....-.+..+|+...+|..|.+++..|+..|.+++++.. ++++.+.+ +.+|++-+....+.+.
T Consensus 62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l-~~~Ga~vi~~~~~~~~~~~~~~~ 140 (331)
T d1tdja1 62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAV-RGFGGEVLLHGANFDEAKAKAIE 140 (331)
T ss_dssp HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHH-HHHSCEEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHH-HhcCCEEEEcCcccccchhhhhh
Confidence 344454444324555566667799999999999999996666552 33355544 8889876653332110
Q ss_pred ----------------------------HHHhcCCccEEEECCCChhhHH---HHHhccccCCEEEEec
Q 018246 241 ----------------------------VKAAMGTMDYIIDTVSAVHSLA---PLLGLLKVNGKLVTVG 278 (359)
Q Consensus 241 ----------------------------~~~~~~~~d~vid~~g~~~~~~---~~~~~l~~~G~~v~~g 278 (359)
+.+-...+|.+|-++|+..++. ..++.+.+.-+++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve 209 (331)
T d1tdja1 141 LSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE 209 (331)
T ss_dssp HHHHHCCEECCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hhhcCCCccccccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence 0000136999999998765443 4555566777887773
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=89.16 E-value=0.16 Score=40.09 Aligned_cols=30 Identities=33% Similarity=0.361 Sum_probs=27.6
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
|+|+|+|+.|+.|+..|...|.+|.++++.
T Consensus 6 viIIGgGpAGl~aA~~aar~G~~V~viE~~ 35 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY 35 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence 788899999999999999999999999864
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.06 E-value=1.4 Score=35.14 Aligned_cols=122 Identities=19% Similarity=0.158 Sum_probs=66.7
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHH-HHCCCeEEEEeCC-----------hhhHHHHHHHcCCcEEecCCCH---
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISTS-----------PKKESEAISKLGADAFLVSSDP--- 238 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la-~~~g~~V~~v~~~-----------~~~~~~~~~~~g~~~v~~~~~~--- 238 (359)
++...+.--.|.+|+|-|.|.+|..+++.+ +..|++|+.++.+ .+.+....++.+.. ..+...
T Consensus 21 ~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~--~~~~~~~~~ 98 (234)
T d1b26a1 21 AMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTV--VTYPKGERI 98 (234)
T ss_dssp HHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCS--TTCSSCEEE
T ss_pred HHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcce--eccccceee
Confidence 344444324789999999999999999887 5679998887632 12333332333310 011000
Q ss_pred HHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCCCCeeeCHH-HHHhcCcEEEE
Q 018246 239 AKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPEKPLEVPIF-ALVGARRLVGG 300 (359)
Q Consensus 239 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~k~~~i~g 300 (359)
+.-.-+....|+.+=|.-....-......++. ++|.-+. ..+.+.... .+..|++.+.+
T Consensus 99 ~~~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~--~~I~e~A-N~p~t~~a~~~L~~rgI~~~P 158 (234)
T d1b26a1 99 TNEELLELDVDILVPAALEGAIHAGNAERIKA--KAVVEGA-NGPTTPEADEILSRRGILVVP 158 (234)
T ss_dssp CHHHHHTSCCSEEEECSCTTCBCHHHHTTCCC--SEEECCS-SSCBCHHHHHHHHHTTCEEEC
T ss_pred ccccccccccceeecchhcccccHHHHHHhhh--ceEeecC-CCCCCHHHHHHHHHCCeEEec
Confidence 01111223789998877665534556666654 3333332 223332222 33456777766
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.05 E-value=0.35 Score=35.96 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=37.1
Q ss_pred hhhhHhHhcCCCCCCCEEEEE--CCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 170 TVYSPMKYYGMTEPGKHLGVA--GLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 170 ta~~~l~~~~~~~~g~~VlI~--G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
|....+. ....+++.++|. |+|.+|+-+++.+...|.+|+++.+.+.
T Consensus 27 t~~d~l~--~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 27 TPEQVMD--GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CHHHHHH--TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CHHHHhc--CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4454443 233688888886 7899999999999999999999998753
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.00 E-value=0.17 Score=40.45 Aligned_cols=30 Identities=33% Similarity=0.319 Sum_probs=27.6
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
|+|+|+|+.|+.++..|.++|.+|.++...
T Consensus 6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~ 35 (235)
T d1h6va1 6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV 35 (235)
T ss_dssp EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 788999999999999999999999999854
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.78 E-value=0.26 Score=40.90 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=30.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEe
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIS 214 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~ 214 (359)
.|.+|+|-|.|.+|..+++.+...|++|++++
T Consensus 35 ~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vs 66 (293)
T d1hwxa1 35 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 68899999999999999999999999998877
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=88.75 E-value=0.21 Score=41.10 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=28.0
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|.+|++++.-+...|.+|+++++.+
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8899999999999988888999999999753
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.70 E-value=0.36 Score=35.96 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=30.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~ 217 (359)
..+++|+|+|+|.+|.=++..+...|+ .|+++.+.+
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 456789999999999999999999998 687877654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=88.67 E-value=0.33 Score=39.58 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=34.2
Q ss_pred HhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC
Q 018246 174 PMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST 215 (359)
Q Consensus 174 ~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~ 215 (359)
++.....--.|.+|+|-|.|.+|..+++++...|++|++++.
T Consensus 26 ~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 26 VMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp HHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 344444334789999999999999999999999999888753
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.57 E-value=0.99 Score=32.31 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=55.1
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEE-eCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhHHH
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVI-STSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSLAP 263 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~ 263 (359)
+|.|.|+ |-+|++..+++...+.+++.. +.+.. .....+|+++|.+.... ...
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~------------------------~~~~~~DVvIDFS~p~~-~~~ 56 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV------------------------EELDSPDVVIDFSSPEA-LPK 56 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE------------------------EECSCCSEEEECSCGGG-HHH
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH------------------------HHhccCCEEEEecCHHH-HHH
Confidence 5889996 999999999999988876653 22110 00135789999887766 444
Q ss_pred HHhccccCCEEEEecCCCC-CeeeCHHHHHhcCcEEEEeec
Q 018246 264 LLGLLKVNGKLVTVGLPEK-PLEVPIFALVGARRLVGGSNV 303 (359)
Q Consensus 264 ~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~k~~~i~g~~~ 303 (359)
.++.....+.=+.+|.+.- ........-..|...+.....
T Consensus 57 ~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~~pv~~a~N 97 (128)
T d1vm6a3 57 TVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYS 97 (128)
T ss_dssp HHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTTSEEEECSC
T ss_pred HHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhhCCEEeeec
Confidence 4444444444455665541 112232333456666655543
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.52 E-value=0.2 Score=39.92 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=27.3
Q ss_pred EEEEECCchHHHHHHHHHHH--CCCeEEEEeCChh
Q 018246 186 HLGVAGLGGLGHVAVKIGKA--FGLKVTVISTSPK 218 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~--~g~~V~~v~~~~~ 218 (359)
+|+|+|+|+.|+.|+..++. .|.+|++.++.+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 79999999999999986654 3779999987753
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.39 E-value=1.8 Score=31.66 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=55.4
Q ss_pred CCCCEEEEEC--CchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHH---HHcCC---cEEecCCCHHHHHHhcCCccEEE
Q 018246 182 EPGKHLGVAG--LGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAI---SKLGA---DAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G--~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~---~~~g~---~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
-.|.+||-++ +|.+|+.| ...|+ +|+.++.+++..+.+. +.++. ..++..+....+......+|+||
T Consensus 13 ~~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeE
Confidence 3688898885 46666643 34687 9999999988765542 34553 23444333344555566899998
Q ss_pred ECCCCh-----hhHHHHH--hccccCCEEEEe
Q 018246 253 DTVSAV-----HSLAPLL--GLLKVNGKLVTV 277 (359)
Q Consensus 253 d~~g~~-----~~~~~~~--~~l~~~G~~v~~ 277 (359)
--.+-. ..++.+. +.|+++|.++.-
T Consensus 89 ~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 89 LDPPYAKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp ECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 543311 1233322 357788887653
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.31 E-value=3.4 Score=29.88 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=45.0
Q ss_pred EEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHH-------cCC-cEEecCCCHHHHHHhcCCccEEEECC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISK-------LGA-DAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~-------~g~-~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+|.|+|+|.+|...+..+...|. ++..++.++++.+-...+ ++. ..+....+. +...+.|+|+-+.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~----~~~~~adiVvita 77 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY----SLLKGSEIIVVTA 77 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG----GGGTTCSEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH----HHhccccEEEEec
Confidence 47888999999998887777665 799999888774322111 222 234333332 2345789999988
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
|.
T Consensus 78 g~ 79 (142)
T d1ojua1 78 GL 79 (142)
T ss_dssp CC
T ss_pred cc
Confidence 84
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.13 E-value=0.24 Score=41.98 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.3
Q ss_pred CEEEEECCchHHHHHHHHHHHCC--CeEEEEeCCh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSP 217 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~ 217 (359)
++|+|+|+|+.|++++..++..| .+|++..+++
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 57999999999999887666555 4899999875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=88.01 E-value=0.21 Score=39.09 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCC-----
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVS----- 256 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g----- 256 (359)
.++.+||-+|+|. |..+..+ .++++++.+++-.+.+ ++.+...+...-. .+......+|+|+..-.
T Consensus 35 ~~~~~vLDiGcG~-G~~~~~~-----~~~~giD~s~~~~~~a-~~~~~~~~~~d~~--~l~~~~~~fD~I~~~~~l~h~~ 105 (208)
T d1vlma_ 35 LPEGRGVEIGVGT-GRFAVPL-----KIKIGVEPSERMAEIA-RKRGVFVLKGTAE--NLPLKDESFDFALMVTTICFVD 105 (208)
T ss_dssp CCSSCEEEETCTT-STTHHHH-----TCCEEEESCHHHHHHH-HHTTCEEEECBTT--BCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCCeEEEECCCC-ccccccc-----ceEEEEeCChhhcccc-ccccccccccccc--cccccccccccccccccccccc
Confidence 4566899998753 4444444 3578999999988888 5556544332111 11111237999987432
Q ss_pred Ch-hhHHHHHhccccCCEEEEecC
Q 018246 257 AV-HSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 257 ~~-~~~~~~~~~l~~~G~~v~~g~ 279 (359)
.. ..+....+.|+|+|+++....
T Consensus 106 d~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 106 DPERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhhhcCCCCceEEEEec
Confidence 22 257889999999999887643
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.00 E-value=0.19 Score=42.42 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=28.5
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
-|+|+|+|..|+.++.-|...|++|+++.+.+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~ 52 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP 52 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38889999999999999999999999998654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.93 E-value=2.5 Score=31.83 Aligned_cols=87 Identities=24% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhH-HHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh--
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKE-SEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH-- 259 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-- 259 (359)
++++|.|+|=|.=|.+-++-+|-.|.+|++--|...+. +.+ ++-|++.. .+.++..+.|+|.-.+..+.
T Consensus 15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-~~~Gf~v~-------~~~eA~~~aDiim~L~PD~~q~ 86 (182)
T d1np3a2 15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-EAHGLKVA-------DVKTAVAAADVVMILTPDEFQG 86 (182)
T ss_dssp HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-HHTTCEEE-------CHHHHHHTCSEEEECSCHHHHH
T ss_pred CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-hhhccccc-------cHHHHhhhcCeeeeecchHHHH
Confidence 56889999999999999999999999999988776543 445 67777542 24555668999998887643
Q ss_pred -hHH-HHHhccccCCEEEEe
Q 018246 260 -SLA-PLLGLLKVNGKLVTV 277 (359)
Q Consensus 260 -~~~-~~~~~l~~~G~~v~~ 277 (359)
.++ .....|+++..+.+.
T Consensus 87 ~vy~~~I~p~lk~g~~L~Fa 106 (182)
T d1np3a2 87 RLYKEEIEPNLKKGATLAFA 106 (182)
T ss_dssp HHHHHHTGGGCCTTCEEEES
T ss_pred HHHHHhhhhhcCCCcEEEEe
Confidence 342 455667887777765
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=87.71 E-value=0.23 Score=42.06 Aligned_cols=31 Identities=32% Similarity=0.237 Sum_probs=28.3
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|+.|+.++.-|...|++|+++...+
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 8999999999999999999999999998654
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=87.68 E-value=0.23 Score=41.85 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=28.4
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
|+|+|+|..|+.++..|...|++|+++.+.+
T Consensus 26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp EEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8999999999999999999999999998754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.65 E-value=0.16 Score=40.49 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=27.8
Q ss_pred CEEEEECCchHHHHHHHHHHHCC-------CeEEEEeCCh
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFG-------LKVTVISTSP 217 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g-------~~V~~v~~~~ 217 (359)
-+|+|+|+|+.|++++..+...| .+|++.++.+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence 37999999999999998887766 5799998765
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.61 E-value=0.17 Score=37.53 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=55.4
Q ss_pred EEEEECC-chHHHHHHHHHHHCC---CeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChhhH
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFG---LKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHSL 261 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g---~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~ 261 (359)
+|.|+|+ |.+|+-.++++...+ .++..+.++...-+.+ .+....... .+.+ .....+.|++|-+.+...+.
T Consensus 4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~~~~~~~~-~~~~--~~~~~~~d~vf~a~p~~~s~ 78 (144)
T d2hjsa1 4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GFAESSLRV-GDVD--SFDFSSVGLAFFAAAAEVSR 78 (144)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EETTEEEEC-EEGG--GCCGGGCSEEEECSCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--eeccccchh-ccch--hhhhccceEEEecCCcchhh
Confidence 5889997 999999999996543 4777766553322111 111111110 0000 01113789999999987756
Q ss_pred HHHHhccccCCEEEEecCC
Q 018246 262 APLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 262 ~~~~~~l~~~G~~v~~g~~ 280 (359)
...-.....+.++++.+..
T Consensus 79 ~~~~~~~~~g~~VID~Ss~ 97 (144)
T d2hjsa1 79 AHAERARAAGCSVIDLSGA 97 (144)
T ss_dssp HHHHHHHHTTCEEEETTCT
T ss_pred hhccccccCCceEEeechh
Confidence 6667777788888887653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=87.60 E-value=0.73 Score=33.70 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=41.6
Q ss_pred EEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHcC------CcEEecCCCHHHHHHhcCCccEEEECCCC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKLG------ADAFLVSSDPAKVKAAMGTMDYIIDTVSA 257 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~g------~~~v~~~~~~~~~~~~~~~~d~vid~~g~ 257 (359)
+|.|+|+|.+|...+..+...+. ++..++..+++.+-...++- ....+...+ .....+.|+|+-+.|.
T Consensus 3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~----~~~~~~adivvitag~ 78 (142)
T d1y6ja1 3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD----YSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C----GGGGTTCSEEEECCCC
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc----HHHhCCCceEEEeccc
Confidence 57888999999999888888876 89999988775322212222 111111111 1223579999999885
Q ss_pred h
Q 018246 258 V 258 (359)
Q Consensus 258 ~ 258 (359)
+
T Consensus 79 ~ 79 (142)
T d1y6ja1 79 N 79 (142)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.48 E-value=0.6 Score=34.40 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=49.7
Q ss_pred EEEEECC-chHHHHHHHH-HHHCC---CeEEEEeCChhhHHHHHHHcCC--cEEecCCCHHHHHHhcCCccEEEECCCCh
Q 018246 186 HLGVAGL-GGLGHVAVKI-GKAFG---LKVTVISTSPKKESEAISKLGA--DAFLVSSDPAKVKAAMGTMDYIIDTVSAV 258 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~l-a~~~g---~~V~~v~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 258 (359)
+|.|+|+ |.+|+-.+++ +.+.. .+++...++....... .++. ..+....+.+. ..++|++|-|++..
T Consensus 3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~--~~~~~~~~~~~~~~~~~----~~~~DivF~a~~~~ 76 (146)
T d1t4ba1 3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP--SFGGTTGTLQDAFDLEA----LKALDIIVTCQGGD 76 (146)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC--GGGTCCCBCEETTCHHH----HHTCSEEEECSCHH
T ss_pred EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc--cccCCceeeecccchhh----hhcCcEEEEecCch
Confidence 6889997 9999999974 54432 3677666554322111 1111 11111222111 23799999999987
Q ss_pred hhHHHHHhccccC--CEEEEecCC
Q 018246 259 HSLAPLLGLLKVN--GKLVTVGLP 280 (359)
Q Consensus 259 ~~~~~~~~~l~~~--G~~v~~g~~ 280 (359)
.+....-+....+ ..+++.+..
T Consensus 77 ~s~~~~~~~~~~g~~~~VID~Ss~ 100 (146)
T d1t4ba1 77 YTNEIYPKLRESGWQGYWIDAASS 100 (146)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSST
T ss_pred HHHHhhHHHHhcCCCeecccCCcc
Confidence 7444444444444 346776543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=1 Score=36.73 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCCCEEEEECCc--hHHHHHHH-HHHHC-C--CeEEEEeCChhhHHHHHHHcCC-----cEEecCCC---HHHHHHh---
Q 018246 182 EPGKHLGVAGLG--GLGHVAVK-IGKAF-G--LKVTVISTSPKKESEAISKLGA-----DAFLVSSD---PAKVKAA--- 244 (359)
Q Consensus 182 ~~g~~VlI~G~g--~vG~~a~~-la~~~-g--~~V~~v~~~~~~~~~~~~~~g~-----~~v~~~~~---~~~~~~~--- 244 (359)
++.-+||-+|+| .+....+. +.... + .++++++.++..++.+.+.+.- ...++... .+.....
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 445578888864 33332222 22222 3 3688999999888777544321 11111111 1111111
Q ss_pred --cCCccEEEECCC-----C-hhhHHHHHhccccCCEEEEecC
Q 018246 245 --MGTMDYIIDTVS-----A-VHSLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 245 --~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 279 (359)
...||+|+..-. . ..++..+.+.|+|+|.++....
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 137999987432 2 2368899999999998877643
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.37 E-value=0.25 Score=40.71 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=27.5
Q ss_pred CEEEEECCchHHHHHHH-HHHHCCCeEEEEeCCh
Q 018246 185 KHLGVAGLGGLGHVAVK-IGKAFGLKVTVISTSP 217 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~-la~~~g~~V~~v~~~~ 217 (359)
.-|+|+|+|+.|+.++. +|+..|.+|.++++.+
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~ 67 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence 34899999999998776 5666799999999775
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.31 E-value=2.2 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCCeEEEEeC
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGLKVTVIST 215 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~ 215 (359)
-++|||+|+ |.+|...+..+...|.+|+++++
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 368999986 99999999999999999999985
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.25 E-value=1.8 Score=36.08 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHCC--CeEEEEeCChhhHHHHH---HHcCCcEEecC-CCHHHHHHhcCCccEEE-E
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISTSPKKESEAI---SKLGADAFLVS-SDPAKVKAAMGTMDYII-D 253 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~g--~~V~~v~~~~~~~~~~~---~~~g~~~v~~~-~~~~~~~~~~~~~d~vi-d 253 (359)
.++|++||-.-+++=|- +.+++...+ ..+++.+.++.|.+.+. +++|...++.. .+..........||.|+ |
T Consensus 114 ~~~g~~vlD~CAapGgK-t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGK-TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 192 (313)
T ss_dssp CCTTCEEEECCSSCSHH-HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred CCccceeeecccchhhh-hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence 38999998863322232 334444443 48999999999876653 45675444332 33323333345788886 4
Q ss_pred --CCCCh-------------------------hhHHHHHhccccCCEEEEe
Q 018246 254 --TVSAV-------------------------HSLAPLLGLLKVNGKLVTV 277 (359)
Q Consensus 254 --~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 277 (359)
|+|.. ..+..+++.+++||++|..
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYs 243 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 243 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEe
Confidence 44432 2457788899999987755
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.62 Score=39.40 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=46.2
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC----------hhhHHHHHHHcC---CcEE-ecCCCHHHHHHhc--CC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS----------PKKESEAISKLG---ADAF-LVSSDPAKVKAAM--GT 247 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~----------~~~~~~~~~~~g---~~~v-~~~~~~~~~~~~~--~~ 247 (359)
++|||+|+ |-+|...+..+...|.+|+++++. .++.+.. +.+. ...+ .|-.+.+.+.+.. ..
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 81 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV-QELTGRSVEFEEMDILDQGALQRLFKKYS 81 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHH-HHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHH-HHhcCCCcEEEEeeccccccccccccccc
Confidence 58999986 999999999999999999998631 1222322 2211 2222 2445555665544 36
Q ss_pred ccEEEECCC
Q 018246 248 MDYIIDTVS 256 (359)
Q Consensus 248 ~d~vid~~g 256 (359)
+++++.+++
T Consensus 82 ~~~i~h~Aa 90 (346)
T d1ek6a_ 82 FMAVIHFAG 90 (346)
T ss_dssp EEEEEECCS
T ss_pred ccccccccc
Confidence 778887765
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.19 E-value=0.77 Score=33.93 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=46.3
Q ss_pred CCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCChhhHHHHHHHc-------CCc-EEecCCCHHHHHHhcCCccEEEE
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSPKKESEAISKL-------GAD-AFLVSSDPAKVKAAMGTMDYIID 253 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~~~~~~~~~~~-------g~~-~v~~~~~~~~~~~~~~~~d~vid 253 (359)
|..+|.|+|+|.+|...+.++...+. ++..++.++++.+-...++ +.. .+....+. +...+.|+|+-
T Consensus 2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~----~~~~~advvvi 77 (150)
T d1t2da1 2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY----DDLAGADVVIV 77 (150)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG----GGGTTCSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccc----cccCCCcEEEE
Confidence 45689999999999988888888887 8999998887643332222 111 12111111 22357899998
Q ss_pred CCCC
Q 018246 254 TVSA 257 (359)
Q Consensus 254 ~~g~ 257 (359)
+.|.
T Consensus 78 tag~ 81 (150)
T d1t2da1 78 TAGF 81 (150)
T ss_dssp CCSC
T ss_pred eccc
Confidence 8874
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=87.11 E-value=0.46 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=27.4
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCCeEEEEeCC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
++|||+|+ |.+|...+..+...|..|++++..
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~ 35 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR 35 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence 47999986 999999999999999988877644
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.09 E-value=0.46 Score=36.81 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=31.9
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHH
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEA 223 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~ 223 (359)
+|.|+|.|-+|+..+.++ +.|.+|+++|.++++.+.+
T Consensus 2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l 38 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKI 38 (196)
T ss_dssp EEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHH
T ss_pred EEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHH
Confidence 578899999999877655 4699999999999998877
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=86.74 E-value=0.34 Score=39.39 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=27.9
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
|+|+|+|+.|+.++..|.+.|.+|.++++.
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~ 33 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKS 33 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 688999999999999999999999999864
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=1.9 Score=33.96 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=62.3
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHC--CCeEEEEeCChhhHHHHHH---HcCCc---EEecCCCHHHHHHh-----cCCc
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISTSPKKESEAIS---KLGAD---AFLVSSDPAKVKAA-----MGTM 248 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~--g~~V~~v~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-----~~~~ 248 (359)
...++||=+|.+ .|..++.+|+.+ +.+|+.++.+++..+.+.+ +.|.. .++..+..+.+.++ ...|
T Consensus 58 ~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 58 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 345688888864 366677777765 4599999999987666632 34532 22223333444443 2379
Q ss_pred cEEEECCCChh---hHHHHHhccccCCEEEEecC
Q 018246 249 DYIIDTVSAVH---SLAPLLGLLKVNGKLVTVGL 279 (359)
Q Consensus 249 d~vid~~g~~~---~~~~~~~~l~~~G~~v~~g~ 279 (359)
|.||--..... .++.+++.|++||.++.=..
T Consensus 137 D~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 137 DVAVVDADKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 99986554332 46789999999999987533
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=86.18 E-value=0.52 Score=33.07 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCEEEEECCchHHHHHHHHHHHC---CCeEEEEeCCh
Q 018246 183 PGKHLGVAGLGGLGHVAVKIGKAF---GLKVTVISTSP 217 (359)
Q Consensus 183 ~g~~VlI~G~g~vG~~a~~la~~~---g~~V~~v~~~~ 217 (359)
..++++|+|+|.+|.-++.++..+ |.+|+++.+++
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence 347899999999999887765543 77999998765
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.12 E-value=0.34 Score=42.05 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=26.1
Q ss_pred EEEEECCchHHHHHHHHHHH------CCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKA------FGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~------~g~~V~~v~~~~ 217 (359)
-|+|+|+|+.|++++..+.+ .|.+|.++.+..
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~ 71 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence 38899999999987765544 789999999764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=86.08 E-value=0.42 Score=36.76 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=54.0
Q ss_pred EEEEECC-chHHHHHHHHHHHCC-CeEEEEeCChhhHHHHHHHcC---CcEEecCCCHHHHHHhcCCccEEEECCCChhh
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFG-LKVTVISTSPKKESEAISKLG---ADAFLVSSDPAKVKAAMGTMDYIIDTVSAVHS 260 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g-~~V~~v~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~ 260 (359)
+|.|+|+ |-+|+-.++++...- .++..+.+....-..+.+.+. ........ ........+.|++|.+.+...
T Consensus 7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dvvf~alp~~~- 83 (183)
T d2cvoa1 7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLV--AVKDADFSNVDAVFCCLPHGT- 83 (183)
T ss_dssp EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCB--CGGGCCGGGCSEEEECCSSSH-
T ss_pred EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccch--hhhhhhhcccceeeeccccch-
Confidence 4788897 999999999998774 476666544332211201111 10000000 011112237899999999887
Q ss_pred HHHHHhccccCCEEEEecCC
Q 018246 261 LAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 261 ~~~~~~~l~~~G~~v~~g~~ 280 (359)
.......+...+..+.....
T Consensus 84 s~~~~~~l~~~~~~v~~~~~ 103 (183)
T d2cvoa1 84 TQEIIKGLPQELKIVDLSAD 103 (183)
T ss_dssp HHHHHHTSCSSCEEEECSST
T ss_pred HHHHHHHHHhcCcccccchh
Confidence 55555677888888876543
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=86.07 E-value=0.3 Score=40.17 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=38.6
Q ss_pred EEEEECC-chHHHHHHHHHHHCCCeEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEECCC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAFGLKVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMG--TMDYIIDTVS 256 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g 256 (359)
+|||+|+ |.+|...+..+...|. ++++++.... + ..|..+.+.+.+... ++|+||.+++
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-------~----~~Dl~~~~~~~~~i~~~~~D~Vih~Aa 63 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-------F----CGDFSNPKGVAETVRKLRPDVIVNAAA 63 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-------S----CCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-------c----cCcCCCHHHHHHHHHHcCCCEEEEecc
Confidence 5899986 9999999887776664 5555543221 1 123445555555443 6899999886
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.41 E-value=2.7 Score=32.21 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=57.7
Q ss_pred CCCCCEEEEECCchHHHHHHHHHHHC-CCeEEEEeCChhhHHHHHHHc---CCc-EEecCC--CHHH-HHHh-cCCccEE
Q 018246 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISTSPKKESEAISKL---GAD-AFLVSS--DPAK-VKAA-MGTMDYI 251 (359)
Q Consensus 181 ~~~g~~VlI~G~g~vG~~a~~la~~~-g~~V~~v~~~~~~~~~~~~~~---g~~-~v~~~~--~~~~-~~~~-~~~~d~v 251 (359)
.++++.++-.++|.=|... .+++.. +.+|++++++++.++.+.+.+ +.. .+++.+ +.+. +... ...+|.|
T Consensus 21 ~~~~~~~lD~t~G~Gghs~-~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI 99 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSR-AILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI 99 (192)
T ss_dssp CCTTCEEEETTCTTSHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred CCCCCEEEEecCCCcHHHH-HHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence 3788877654444434433 344443 569999999999988885443 322 223222 1121 2222 2478887
Q ss_pred EECCCC-h--------------hhHHHHHhccccCCEEEEecCC
Q 018246 252 IDTVSA-V--------------HSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 252 id~~g~-~--------------~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
+--.|- . ..+..+.+.|+++|+++.+...
T Consensus 100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 533432 1 2466778889999998876543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.27 E-value=0.41 Score=39.66 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=26.9
Q ss_pred EEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~ 217 (359)
.|+|+|+|.+|++++.-+...|. +|+++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 48999999999988877777886 799998763
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.04 E-value=1.5 Score=38.40 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=29.5
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCCh
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTSP 217 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~~ 217 (359)
+.+|||+|+|++|--++..+...|. ++.+++...
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 3569999999999999999999999 899998543
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.71 E-value=0.59 Score=32.85 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=28.5
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCC---CeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFG---LKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g---~~V~~v~~~~ 217 (359)
+..++++|+|+|.+|.-++..+..+| .+|+++.+.+
T Consensus 18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 34578999999999998887776654 4799998764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=0.48 Score=40.03 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=28.4
Q ss_pred EE-EEECC-chHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 186 HL-GVAGL-GGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 186 ~V-lI~G~-g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
+| ||+|+ |-+|...+..+...|.+|+++++..
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 46 89986 9999999999999999999999854
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=84.48 E-value=0.93 Score=33.28 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=44.9
Q ss_pred CCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEEC
Q 018246 184 GKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL-------GADAFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 184 g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
..+|.|+|+|.+|...+..+...|. ++..++.++++.+-...++ +...+. ..+. +...+.|+|+-+
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~-~~d~----~~~~~adivvit 79 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SGEY----SDCKDADLVVIT 79 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-ECCG----GGGTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe-eccH----HHhccccEEEEe
Confidence 4579999999999998888877764 8999999887654322221 112222 2221 123478888888
Q ss_pred CCCh
Q 018246 255 VSAV 258 (359)
Q Consensus 255 ~g~~ 258 (359)
+|.+
T Consensus 80 ag~~ 83 (146)
T d1ez4a1 80 AGAP 83 (146)
T ss_dssp CCC-
T ss_pred cccc
Confidence 7754
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.47 E-value=1.4 Score=33.84 Aligned_cols=96 Identities=16% Similarity=0.295 Sum_probs=58.8
Q ss_pred EEEEECCchHHHHHHHHHHHCC-----CeEEE-EeC--ChhhHHHHHHH------cCCc---------------EEec--
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFG-----LKVTV-IST--SPKKESEAISK------LGAD---------------AFLV-- 234 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g-----~~V~~-v~~--~~~~~~~~~~~------~g~~---------------~v~~-- 234 (359)
+|.|.|-|-+|+.+.+.+-..+ .+|++ .+. +.+.+.++++- +..+ .+++
T Consensus 4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g~ 83 (190)
T d1k3ta1 4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGH 83 (190)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEETTE
T ss_pred EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEEcCc
Confidence 5788999999999998765442 24444 333 45566666441 1100 1111
Q ss_pred -------CCCHHHHHHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 235 -------SSDPAKVKAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 235 -------~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.+++..+.+...++|+|+||+|.-.+.+.+..++..|-+-|.+..+.
T Consensus 84 ~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~ 137 (190)
T d1k3ta1 84 RILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA 137 (190)
T ss_dssp EEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred eEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCC
Confidence 12222222222389999999997766788889998886666665543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=84.34 E-value=0.99 Score=35.65 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=62.4
Q ss_pred hhHhHhcCCCCCCCEEEEECCchHHHHHHHHHHHCCC-eEEEEeCC--------hhhHHHHHHHcCCcEEecC-CCHHHH
Q 018246 172 YSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISTS--------PKKESEAISKLGADAFLVS-SDPAKV 241 (359)
Q Consensus 172 ~~~l~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~V~~v~~~--------~~~~~~~~~~~g~~~v~~~-~~~~~~ 241 (359)
+.+++..+.--..++|++.|+|..|...+++....+. +++.+++. ...++.....+... .+. .....+
T Consensus 14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~l 91 (222)
T d1vl6a1 14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI--TNPERLSGDL 91 (222)
T ss_dssp HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT--SCTTCCCSCH
T ss_pred HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhh--hcchhhhcch
Confidence 4556666654578899999999999999999998888 89999865 11111110111100 000 001123
Q ss_pred HHhcCCccEEEECCCChhhHHHHHhccccCCEEEEecCCC
Q 018246 242 KAAMGTMDYIIDTVSAVHSLAPLLGLLKVNGKLVTVGLPE 281 (359)
Q Consensus 242 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 281 (359)
.....+.++++-...........+..+.+.-.+.-+..+.
T Consensus 92 ~~~l~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNPt 131 (222)
T d1vl6a1 92 ETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV 131 (222)
T ss_dssp HHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred HhhccCcceeccccccccccHHHHhhcCCCCEEEecCCCc
Confidence 3344577777776655443345666666655555554443
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=84.24 E-value=0.53 Score=38.20 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=28.7
Q ss_pred EEEEECCchHHHHHHHHHHHCCCeEEEEeCCh
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISTSP 217 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~ 217 (359)
.++|+|+|+.|+.++..+..+|.+|.++...+
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~ 75 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 37888999999999999999999999998754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=83.99 E-value=0.73 Score=35.13 Aligned_cols=92 Identities=16% Similarity=0.127 Sum_probs=54.9
Q ss_pred EEEEECC-chHHHHHHHHHHHC-CCeEEEEeC-C--h---hhHHHHHHHc-C--CcEEecCCCHHHHHHhcCCccEEEEC
Q 018246 186 HLGVAGL-GGLGHVAVKIGKAF-GLKVTVIST-S--P---KKESEAISKL-G--ADAFLVSSDPAKVKAAMGTMDYIIDT 254 (359)
Q Consensus 186 ~VlI~G~-g~vG~~a~~la~~~-g~~V~~v~~-~--~---~~~~~~~~~~-g--~~~v~~~~~~~~~~~~~~~~d~vid~ 254 (359)
+|.|+|+ |-+|+-.++++... ..++..+.. + . ++.......+ + ...+....+ .......+|++|-|
T Consensus 3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dvvf~a 79 (179)
T d2g17a1 3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD---VRDFSADVDVVFLA 79 (179)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESC---GGGTCTTCCEEEEC
T ss_pred EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchh---hhhhhcccceeecc
Confidence 5889997 99999999999987 556655432 1 1 1222221111 1 111111111 11223478999999
Q ss_pred CCChhhHHHHHhccccCCEEEEecCC
Q 018246 255 VSAVHSLAPLLGLLKVNGKLVTVGLP 280 (359)
Q Consensus 255 ~g~~~~~~~~~~~l~~~G~~v~~g~~ 280 (359)
.+........-..+..+-++++.+..
T Consensus 80 lp~~~s~~~~~~~~~~~~~vIDlSad 105 (179)
T d2g17a1 80 TAHEVSHDLAPQFLQAGCVVFDLSGA 105 (179)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred ccchhHHHHhhhhhhcCceeeccccc
Confidence 99877556666677777788887643
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=83.64 E-value=1.5 Score=32.65 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEE
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL-------GADAFLVSSDPAKVKAAMGTMDYII 252 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vi 252 (359)
.+..+|.|+|+|.+|..++..+...|. ++..++.++++.+-...++ +...++...+. +...+.|+|+
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~----~~~~~adiVV 93 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY----SVTANSKIVV 93 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG----GGGTTCSEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch----hhcccccEEE
Confidence 456789999999999999999998886 8999998877653222222 11222222221 1234788888
Q ss_pred ECCCCh
Q 018246 253 DTVSAV 258 (359)
Q Consensus 253 d~~g~~ 258 (359)
-++|.+
T Consensus 94 itAg~~ 99 (160)
T d1i0za1 94 VTAGVR 99 (160)
T ss_dssp ECCSCC
T ss_pred EecCCc
Confidence 877753
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=83.61 E-value=1.1 Score=32.96 Aligned_cols=69 Identities=25% Similarity=0.341 Sum_probs=43.5
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL-------GADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
++|.|+|+|.+|..++..+...|. ++..++.++++.+....++ +....+...+. +...+.|+|+-++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~----~~l~~adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW----AALADADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG----GGGTTCSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH----HHhccccEEEEec
Confidence 578899999999988887777664 8999998887643332221 11111212221 1234788888877
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
|.
T Consensus 78 G~ 79 (146)
T d1hyha1 78 GN 79 (146)
T ss_dssp SC
T ss_pred cc
Confidence 74
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.39 E-value=2.5 Score=36.27 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=38.1
Q ss_pred CCCCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeC---ChhhHHHHHHHcCCcEEe
Q 018246 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVIST---SPKKESEAISKLGADAFL 233 (359)
Q Consensus 180 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~---~~~~~~~~~~~~g~~~v~ 233 (359)
.++++.+|+-..+|..|++.+.+|+.+|.+++++.. ++++.+.+ +.+|++-+.
T Consensus 140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~i-ra~GAeVi~ 195 (382)
T d1wkva1 140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLP-RLLGAQVIV 195 (382)
T ss_dssp TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHH-HHTTCEEEE
T ss_pred ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccc-cccCcceee
Confidence 457777655456799999999999999996666553 33444444 889987654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=83.31 E-value=0.79 Score=36.54 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=28.7
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
|+|+|+|+.|+-|+..|..+|+++.++..+.+
T Consensus 5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~~~ 36 (230)
T d2cula1 5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD 36 (230)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEEeccc
Confidence 78889999999999999999999999987643
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=82.26 E-value=1.5 Score=31.87 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=44.0
Q ss_pred EEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc-------CC-cEEecCCCHHHHHHhcCCccEEEECC
Q 018246 186 HLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL-------GA-DAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 186 ~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~-------g~-~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
+|.|+|+|.+|...+..+...+. ++..++.++++.+.....+ +. ..+....+. +...+.|+|+-++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~----~~~~dadvvvita 77 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY----ADTANSDIVIITA 77 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG----GGGTTCSEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH----HHhcCCeEEEEEE
Confidence 47888999999998888888874 8999998887654332221 11 122222221 2235788888887
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
|.
T Consensus 78 g~ 79 (142)
T d1guza1 78 GL 79 (142)
T ss_dssp SC
T ss_pred ec
Confidence 74
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.77 E-value=0.87 Score=33.74 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=75.6
Q ss_pred CCEEEEECC-chHHHHHHHHHHHCCC---eEEEEeCChhhHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEECCCChh
Q 018246 184 GKHLGVAGL-GGLGHVAVKIGKAFGL---KVTVISTSPKKESEAISKLGADAFLVSSDPAKVKAAMGTMDYIIDTVSAVH 259 (359)
Q Consensus 184 g~~VlI~G~-g~vG~~a~~la~~~g~---~V~~v~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 259 (359)
|-+|.|+|+ |-+|.-.++++..... ++..+.++...-... .+.......... ........|+++-+.+...
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~~~~~~~~~~---~~~~~~~~d~~f~~~~~~~ 75 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFKDQDITIEET---TETAFEGVDIALFSAGSST 75 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EETTEEEEEEEC---CTTTTTTCSEEEECSCHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--cccCCccccccc---chhhhhhhhhhhhccCccc
Confidence 347999997 9999999999987743 555555442211111 011111110000 0111237899999999887
Q ss_pred hHHHHHhccccCCEEEEecCCCC---CeeeCHHHHH----hcCcEEEEeecCCHHHHHHHHHHHHhCCCcccE
Q 018246 260 SLAPLLGLLKVNGKLVTVGLPEK---PLEVPIFALV----GARRLVGGSNVGGMKETQEMLDFCAKHNIAADI 325 (359)
Q Consensus 260 ~~~~~~~~l~~~G~~v~~g~~~~---~~~~~~~~~~----~k~~~i~g~~~~~~~~~~~~~~~l~~g~i~~~~ 325 (359)
+.....+....+-++++.+..-. .+++-...+. .+...+.....=....+.-+.-+.+++.|++..
T Consensus 76 s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt~i~~l~PL~~~~lik~~~ 148 (154)
T d2gz1a1 76 SAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWNSVQIAETLHERGLVRPTA 148 (154)
T ss_dssp HHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHHHHHHHHHHHHTTCCSCCS
T ss_pred hhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHHHHHHHHHHHHhcCCCccc
Confidence 67777778888899999875432 3333333332 222233332211112233355677778777643
|
| >d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: GroES-like superfamily: GroES-like family: GroES domain: Chaperonin-10 (GroES) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.73 E-value=0.75 Score=31.32 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=19.4
Q ss_pred ccEEEEEeCCCCC----------CCCCCCEEEEec
Q 018246 74 IVGTVTKVGNNVS----------KFKEGDKVGVGV 98 (359)
Q Consensus 74 ~~G~V~~vG~~v~----------~~~vGdrV~v~~ 98 (359)
..|+|+++|++.. ..++||+|+...
T Consensus 38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~~ 72 (99)
T d1p3ha_ 38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSK 72 (99)
T ss_dssp EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEEC
T ss_pred eEEEEEEECCceEcCCCCEecCCeeecCCEEEEcc
Confidence 3699999998742 378999997543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.65 E-value=0.23 Score=40.29 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=30.9
Q ss_pred CCCCEEEEECCchHHHHHHHHHHHCCCeEEEEeCChhhHHHHHH
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISTSPKKESEAIS 225 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~~~~~~~~ 225 (359)
.+|.+||-+|+|. |..+..++...+.+|++++-++.-++.+.+
T Consensus 50 ~~g~~vLDlGcG~-G~~~~~~~~~~~~~v~giD~S~~~i~~a~~ 92 (257)
T d2a14a1 50 LQGDTLIDIGSGP-TIYQVLAACDSFQDITLSDFTDRNREELEK 92 (257)
T ss_dssp CCEEEEEESSCTT-CCGGGTTGGGTEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCC-CHhHHHHhccccCcEEEecCCHHHHHHHHH
Confidence 6788899888864 444444555444489999999988887744
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.55 E-value=0.89 Score=38.38 Aligned_cols=72 Identities=18% Similarity=0.061 Sum_probs=45.0
Q ss_pred CEEEEECC-chHHHHHHHHHHHCCC--eEEEEeCC-----hhhHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGL-GGLGHVAVKIGKAFGL--KVTVISTS-----PKKESEAISKLGADA-FLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~-g~vG~~a~~la~~~g~--~V~~v~~~-----~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.+|||+|+ |.+|...+..+...|. +|++++.. ..+.... ..-+.+. ..|..+.+.+..+..+.|.|+..+
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a 81 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVHYA 81 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhhhh
Confidence 47999986 9999999888877776 45555521 1111111 1111222 235566777777778888888876
Q ss_pred CC
Q 018246 256 SA 257 (359)
Q Consensus 256 g~ 257 (359)
..
T Consensus 82 ~~ 83 (346)
T d1oc2a_ 82 AE 83 (346)
T ss_dssp SC
T ss_pred hc
Confidence 54
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.26 E-value=1.9 Score=32.04 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=46.0
Q ss_pred CEEEEECCchHHHHHHHHHHHCCC--eEEEEeCChhhHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEECC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGL--KVTVISTSPKKESEAISKL-------GADAFLVSSDPAKVKAAMGTMDYIIDTV 255 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~--~V~~v~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~~ 255 (359)
.+|.|+|+|.+|..++..+...|. ++..++.++++.+-...++ +...++...+. ....+.|+|+-+.
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~----~~~~~adivvita 95 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY----NVSANSKLVIITA 95 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG----GGGTTEEEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch----hhhccccEEEEec
Confidence 479999999999999988888876 7999998877643221222 12222222221 1235788998888
Q ss_pred CCh
Q 018246 256 SAV 258 (359)
Q Consensus 256 g~~ 258 (359)
|.+
T Consensus 96 g~~ 98 (159)
T d2ldxa1 96 GAR 98 (159)
T ss_dssp SCC
T ss_pred ccc
Confidence 753
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=81.11 E-value=0.5 Score=39.86 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=28.4
Q ss_pred EEEECCchHHHHHHHHHHHCCCeEEEEeCChh
Q 018246 187 LGVAGLGGLGHVAVKIGKAFGLKVTVISTSPK 218 (359)
Q Consensus 187 VlI~G~g~vG~~a~~la~~~g~~V~~v~~~~~ 218 (359)
|||+|+|.-|+.++.-|...|++|+++...+.
T Consensus 10 VlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~ 41 (330)
T d1neka2 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (330)
T ss_dssp CEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred EEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 78999999999999999899999999986543
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.34 E-value=0.9 Score=33.67 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=25.1
Q ss_pred CEEEEECCchHHHHHHHHHHHCCCeEEEEeCC
Q 018246 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISTS 216 (359)
Q Consensus 185 ~~VlI~G~g~vG~~a~~la~~~g~~V~~v~~~ 216 (359)
.+|+|+|+|.+|+-++..++. +.+|+++.+.
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~ 31 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence 379999999999988877654 6699998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.22 E-value=1.1 Score=32.40 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=26.9
Q ss_pred CCCCEEEEECCchHHHHHHHHH----HHCCCeEEEEeCCh
Q 018246 182 EPGKHLGVAGLGGLGHVAVKIG----KAFGLKVTVISTSP 217 (359)
Q Consensus 182 ~~g~~VlI~G~g~vG~~a~~la----~~~g~~V~~v~~~~ 217 (359)
+.+++++|+|+|.+|.-++..+ +..|.+|+++.+.+
T Consensus 35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 35 REVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp HHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred hcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 4567999999999996544333 45789999998754
|